miRTarBase - #MIRT336802


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pre-miRNA Information
pre-miRNA hsa-mir-548ah   
Genomic Coordinates chr4: 76575551 - 76575626
Description Homo sapiens miR-548ah stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ah-3p
Sequence 47| CAAAAACUGCAGUUACUUUUGC |68
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 4 + 76575599 29233923 MiREDiBase
A-to-I 4 4 + 76575600 29233923 MiREDiBase
A-to-I 5 4 + 76575601 29233923 MiREDiBase
A-to-I 6 4 + 76575602 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1486932451 12 dbSNP
rs1036377818 16 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ARF1   
Synonyms -
Description ADP ribosylation factor 1
Transcript NM_001024226   
Other Transcripts NM_001024227 , NM_001024228 , NM_001658   
Expression
Putative miRNA Targets on ARF1
3'UTR of ARF1
(miRNA target sites are highlighted)		 
>ARF1|NM_001024226|3'UTR
   1 ACGCGACCCCCCTCCCTCTCACTCCTCTTGCCCTCTGCTTTACTCTCATGTGGCAAACGTGCGGCTCGTGGTGTGAGTGC
  81 CAGAAGCTGCCTCCGTGGTTTGGTCACCGTGTGCATCGCACCGTGCTGTAAATGTGGCAGACGCAGCCTGCGGCCAGGCT
 161 TTTTATTTAATGTAAATAGTTTTTGTTTCCAATGAGGCAGTTTCTGGTACTCCTATGCAATATTACTCAGCTTTTTTTAT
 241 TGTAAAAAGAAAAATCAACTCACTGTTCAGTGCTGAGAGGGGATGTAGGCCCATGGGCACCTGGCCTCCAGGAGTCGCTG
 321 TGTTGGGAGAGCCGGCCACGCCCTTGGCTTTAGAGCTGTGTTGAAATCCATTTTGGTGGTTGGTTTTTAACCCAAACTCA
 401 GTGCATTTTTTAAAATAGTTAAGAATCCAAGTCGAGAACACTTGAACACACAGAAGGGAGACCCCGCCTAGCATAGATTT
 481 GCAGTTACGGCCTGGATGCCAGTCGCCAGCCCAGCTGTTCCCCTCGGGAACATGAGGTGGTGGTGGCGCAGCAGACTGCG
 561 ATCAATTCTGCATGGTCACAGTAGAGATCCCCGCAACTCGCTTGTCCTTGGGTCACCCTGCATTCCATAGCCATGTGCTT
 641 GTCCCTGTGCTCCCACGGTTCCCAGGGGCCAGGCTGGGAGCCCACAGCCACCCCACTATGCCGCAGGCCGCCCTACCCAC
 721 CTTCAGGCAGCCTATGGGACGCAGGGCCCCATCTGTCCCTCGGTCGCCGTGTGGCCAGAGTGGGTCCGTCGTCCCCAACA
 801 CTCGTGCTCGCTCAGACACTTTGGCAGGATGTCTGGGGCCTCACCAGCAGGAGCGCGTGCAAGCCGGGCAGGCGGTCCAC
 881 CTAGACCCACAGCCCCTCGGGAGCACCCCACCTCTGTGTGTGATGTAGCTTTCTCTCCCTCAGCCTGCAAGGGTCCGATT
 961 TGCCATCGAAAAAGACAACCTCTACTTTTTTCTTTTGTATTTTGATAAACACTGAAGCTGGAGCTGTTAAATTTATCTTG
1041 GGGAAACCTCAGAACTGGTCTATTTGGTGTCGTGGAACCTCTTACTGCTTTCAATACACGATTAGTAATCAACTGTTTTG
1121 TATACTTGTTTTCAGTTTTCATTTCGACAAACAAGCACTGTAATTATAGCTATTAGAATAAAATCTCTTAACTATTTCAA
1201 AAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cguUUUCAUUGACGUCAAAAAc 5'
             || |||| |  ||||||| 
Target 5' tttAATGTAAAT--AGTTTTTg 3'
 166 - 185 159.00 -9.20
2 
miRNA  3' cguuuUCAUUGACGUCAAAAAc 5'
               :||:::|  :|||||| 
Target 5' attttGGTGGTT--GGTTTTTa 3'
 370 - 389 133.00 -7.00
3 
miRNA  3' cguUUUCAUUGACGUCAAAAAc 5'
             ||  | ||| ||| |||| 
Target 5' tgcAATATTACT-CAGCTTTTt 3'
 216 - 236 126.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28852468 3 COSMIC
COSN30492965 4 COSMIC
COSN26966518 5 COSMIC
COSN30153985 19 COSMIC
COSN30497169 24 COSMIC
COSN30156444 28 COSMIC
COSN31481498 59 COSMIC
COSN31605017 64 COSMIC
COSN30191321 72 COSMIC
COSN30520292 85 COSMIC
COSN30498621 109 COSMIC
COSN30104833 112 COSMIC
COSN31526900 118 COSMIC
COSN13521938 119 COSMIC
COSN506967 124 COSMIC
COSN30493395 144 COSMIC
COSN31662939 152 COSMIC
COSN31598012 153 COSMIC
COSN32037196 179 COSMIC
COSN31566768 184 COSMIC
COSN26642135 216 COSMIC
COSN31662566 225 COSMIC
COSN8637607 317 COSMIC
COSN25027482 321 COSMIC
COSN31481693 334 COSMIC
COSN31485405 340 COSMIC
COSN31590564 356 COSMIC
COSN22678181 360 COSMIC
COSN26585453 379 COSMIC
COSN31543127 548 COSMIC
COSN16052637 560 COSMIC
COSN20925316 567 COSMIC
COSN1099211 639 COSMIC
COSN31536095 651 COSMIC
COSN31583909 716 COSMIC
COSN31556664 763 COSMIC
COSN30545050 788 COSMIC
COSN31566322 839 COSMIC
COSN6025862 856 COSMIC
COSN31661808 865 COSMIC
COSN31577073 874 COSMIC
COSN30543744 957 COSMIC
COSN31523634 1089 COSMIC
COSN31588039 1146 COSMIC
COSN15742136 1184 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs546805625 3 dbSNP
rs777310017 4 dbSNP
rs374058258 5 dbSNP
rs368278171 6 dbSNP
rs746250685 7 dbSNP
rs200690064 8 dbSNP
rs1435879137 9 dbSNP
rs372012030 12 dbSNP
rs982949989 13 dbSNP
rs751679760 14 dbSNP
rs761910680 16 dbSNP
rs750370290 18 dbSNP
rs772454881 18 dbSNP
rs201854692 22 dbSNP
rs1283201358 32 dbSNP
rs1362238468 33 dbSNP
rs974205715 36 dbSNP
rs895067230 39 dbSNP
rs776199101 43 dbSNP
rs1271853169 44 dbSNP
rs1281344338 46 dbSNP
rs747063787 47 dbSNP
rs768897179 48 dbSNP
rs915870928 48 dbSNP
rs906260204 49 dbSNP
rs1225679129 54 dbSNP
rs1175698396 59 dbSNP
rs1405397975 60 dbSNP
rs185819366 63 dbSNP
rs948779677 64 dbSNP
rs1336032319 68 dbSNP
rs1044986290 69 dbSNP
rs1166824013 73 dbSNP
rs533722351 76 dbSNP
rs1390985720 91 dbSNP
rs1381942059 95 dbSNP
rs1025298363 96 dbSNP
rs1293895379 98 dbSNP
rs1239592326 105 dbSNP
rs1211355720 106 dbSNP
rs906488895 108 dbSNP
rs1342841974 109 dbSNP
rs1219780657 110 dbSNP
rs1283252811 116 dbSNP
rs1320770206 118 dbSNP
rs1297868331 119 dbSNP
rs1244862487 122 dbSNP
rs748843233 123 dbSNP
rs555307225 124 dbSNP
rs1448611129 125 dbSNP
rs568918854 129 dbSNP
rs747686177 130 dbSNP
rs892301595 134 dbSNP
rs1431701861 137 dbSNP
rs1371310832 141 dbSNP
rs983751851 143 dbSNP
rs1011048178 144 dbSNP
rs1018445979 148 dbSNP
rs964274745 152 dbSNP
rs1416355544 153 dbSNP
rs1157931649 156 dbSNP
rs1485344291 158 dbSNP
rs1203102356 160 dbSNP
rs1231635156 160 dbSNP
rs1265051958 162 dbSNP
rs1022057806 172 dbSNP
rs976922608 173 dbSNP
rs1478047230 175 dbSNP
rs922784186 178 dbSNP
rs899482669 183 dbSNP
rs977943181 189 dbSNP
rs925973998 191 dbSNP
rs935949419 193 dbSNP
rs1372433645 202 dbSNP
rs1431469626 211 dbSNP
rs1286367941 217 dbSNP
rs1178329051 220 dbSNP
rs1411602186 220 dbSNP
rs1351109902 221 dbSNP
rs996547523 225 dbSNP
rs1359900355 228 dbSNP
rs537897365 229 dbSNP
rs555105464 229 dbSNP
rs557821076 230 dbSNP
rs895036120 231 dbSNP
rs947972332 231 dbSNP
rs1161925664 232 dbSNP
rs1046213668 235 dbSNP
rs1251851861 239 dbSNP
rs578074868 241 dbSNP
rs1453305262 250 dbSNP
rs190969663 252 dbSNP
rs1487244374 265 dbSNP
rs184012798 267 dbSNP
rs1248090851 268 dbSNP
rs559423180 269 dbSNP
rs1385247393 275 dbSNP
rs983000891 282 dbSNP
rs1015693216 283 dbSNP
rs1230109476 294 dbSNP
rs993926187 295 dbSNP
rs1047210897 305 dbSNP
rs1385117841 309 dbSNP
rs962925269 310 dbSNP
rs1294323451 311 dbSNP
rs549568902 312 dbSNP
rs567491415 314 dbSNP
rs1430291117 317 dbSNP
rs1386862857 318 dbSNP
rs561622315 322 dbSNP
rs1803042 328 dbSNP
rs748699232 329 dbSNP
rs530513739 332 dbSNP
rs1220391642 334 dbSNP
rs1005145583 335 dbSNP
rs1017913018 340 dbSNP
rs544263833 341 dbSNP
rs1426683649 344 dbSNP
rs1191347500 350 dbSNP
rs1464184609 361 dbSNP
rs1245909685 363 dbSNP
rs1301379949 366 dbSNP
rs1210336433 371 dbSNP
rs189047528 372 dbSNP
rs964243921 374 dbSNP
rs553449887 377 dbSNP
rs1287775656 381 dbSNP
rs1231047385 384 dbSNP
rs772689927 388 dbSNP
rs1302073765 399 dbSNP
rs1214157967 400 dbSNP
rs1363264010 403 dbSNP
rs1029822091 404 dbSNP
rs967989735 414 dbSNP
rs977620615 422 dbSNP
rs1488464124 427 dbSNP
rs1401897216 444 dbSNP
rs1221504121 446 dbSNP
rs528958456 448 dbSNP
rs1266604378 449 dbSNP
rs1468036328 449 dbSNP
rs1489430955 457 dbSNP
rs1176181313 460 dbSNP
rs928628401 464 dbSNP
rs925993387 466 dbSNP
rs1190183994 467 dbSNP
rs939210649 469 dbSNP
rs1052368939 472 dbSNP
rs1425955899 472 dbSNP
rs372563172 475 dbSNP
rs533072312 476 dbSNP
rs763523737 478 dbSNP
rs1382425042 480 dbSNP
rs1204490526 487 dbSNP
rs1340218511 487 dbSNP
rs1300080214 488 dbSNP
rs1043846822 489 dbSNP
rs947941251 490 dbSNP
rs1398253083 496 dbSNP
rs1163348994 505 dbSNP
rs879430273 506 dbSNP
rs35381840 520 dbSNP
rs11541554 523 dbSNP
rs929762344 526 dbSNP
rs1050682598 527 dbSNP
rs1443958827 528 dbSNP
rs1185117794 534 dbSNP
rs1049309 535 dbSNP
rs1256777449 536 dbSNP
rs1353977584 536 dbSNP
rs1482081603 537 dbSNP
rs1276871756 542 dbSNP
rs1039358906 545 dbSNP
rs566673918 545 dbSNP
rs766862626 548 dbSNP
rs190655227 549 dbSNP
rs963186169 550 dbSNP
rs548867962 553 dbSNP
rs1288255085 554 dbSNP
rs995729445 555 dbSNP
rs376889700 560 dbSNP
rs568854378 561 dbSNP
rs1389532752 567 dbSNP
rs1480322587 573 dbSNP
rs999458048 578 dbSNP
rs1176890038 579 dbSNP
rs770784114 580 dbSNP
rs760809809 581 dbSNP
rs1158247792 589 dbSNP
rs766760036 589 dbSNP
rs928595746 591 dbSNP
rs940852074 593 dbSNP
rs1182959640 594 dbSNP
rs1451147922 600 dbSNP
rs1412076604 601 dbSNP
rs6920 607 dbSNP
rs557759351 610 dbSNP
rs1267893344 612 dbSNP
rs571623240 617 dbSNP
rs1227050344 619 dbSNP
rs1354497120 623 dbSNP
rs913841944 627 dbSNP
rs1289573130 628 dbSNP
rs534318618 631 dbSNP
rs1442299811 635 dbSNP
rs1330065216 636 dbSNP
rs1321112598 637 dbSNP
rs554035684 639 dbSNP
rs1388158418 642 dbSNP
rs1391133537 649 dbSNP
rs991540415 652 dbSNP
rs1455490056 656 dbSNP
rs574182209 657 dbSNP
rs182737956 658 dbSNP
rs1377066275 664 dbSNP
rs1043598845 669 dbSNP
rs78445387 675 dbSNP
rs1376011634 680 dbSNP
rs1201183448 681 dbSNP
rs757278530 686 dbSNP
rs1452436429 692 dbSNP
rs1247740665 694 dbSNP
rs1207186283 695 dbSNP
rs1466582665 696 dbSNP
rs921102371 697 dbSNP
rs1282108998 700 dbSNP
rs1381042768 703 dbSNP
rs187026506 704 dbSNP
rs1050817072 707 dbSNP
rs576840789 711 dbSNP
rs1003858777 714 dbSNP
rs1234902799 715 dbSNP
rs759971760 717 dbSNP
rs1371253660 719 dbSNP
rs1296465931 722 dbSNP
rs1037689305 735 dbSNP
rs1318821175 739 dbSNP
rs1295121122 741 dbSNP
rs1348356580 743 dbSNP
rs898783205 744 dbSNP
rs1063427 747 dbSNP
rs1478423763 747 dbSNP
rs1305702736 752 dbSNP
rs1023094964 753 dbSNP
rs76865338 754 dbSNP
rs564128136 759 dbSNP
rs767439441 760 dbSNP
rs1451660050 761 dbSNP
rs1249045110 762 dbSNP
rs1046899408 763 dbSNP
rs532852550 766 dbSNP
rs540332311 767 dbSNP
rs560041250 769 dbSNP
rs541637429 770 dbSNP
rs956005689 776 dbSNP
rs1182807295 779 dbSNP
rs1367004052 780 dbSNP
rs745567330 782 dbSNP
rs374538849 787 dbSNP
rs1270582173 788 dbSNP
rs191562404 789 dbSNP
rs988849065 791 dbSNP
rs913798981 792 dbSNP
rs3210485 797 dbSNP
rs1336168874 799 dbSNP
rs967955681 804 dbSNP
rs548800807 805 dbSNP
rs1050769389 808 dbSNP
rs921079892 810 dbSNP
rs779498954 811 dbSNP
rs1468880351 813 dbSNP
rs1802279 816 dbSNP
rs1181619814 822 dbSNP
rs184526515 823 dbSNP
rs912353393 827 dbSNP
rs1188917590 844 dbSNP
rs770829536 845 dbSNP
rs939682831 850 dbSNP
rs1036667174 854 dbSNP
rs1013005705 855 dbSNP
rs774901829 856 dbSNP
rs1803142 857 dbSNP
rs760208582 858 dbSNP
rs1354068586 860 dbSNP
rs981874669 866 dbSNP
rs1045054963 867 dbSNP
rs531523370 869 dbSNP
rs775361920 870 dbSNP
rs1003065399 874 dbSNP
rs951389696 875 dbSNP
rs1269393719 877 dbSNP
rs1803139 881 dbSNP
rs1416425221 899 dbSNP
rs1220391036 900 dbSNP
rs1278814707 905 dbSNP
rs1472566928 908 dbSNP
rs748971089 911 dbSNP
rs1318635156 912 dbSNP
rs1179358596 914 dbSNP
rs187703170 915 dbSNP
rs941237485 920 dbSNP
rs1276680479 923 dbSNP
rs1449590397 925 dbSNP
rs1444354712 932 dbSNP
rs118063156 934 dbSNP
rs1328369548 935 dbSNP
rs14892 935 dbSNP
rs1286427885 936 dbSNP
rs767722916 938 dbSNP
rs1241885104 941 dbSNP
rs1803143 941 dbSNP
rs1803141 951 dbSNP
rs1293099097 952 dbSNP
rs933736016 953 dbSNP
rs1021584669 956 dbSNP
rs1327021061 957 dbSNP
rs1457089178 958 dbSNP
rs567693214 960 dbSNP
rs1425001043 962 dbSNP
rs779388721 968 dbSNP
rs13338 969 dbSNP
rs1170303443 972 dbSNP
rs1487314594 978 dbSNP
rs777082212 981 dbSNP
rs979361364 983 dbSNP
rs1414671277 985 dbSNP
rs934906415 985 dbSNP
rs1464330598 986 dbSNP
rs1054671656 992 dbSNP
rs1317285986 993 dbSNP
rs748455009 996 dbSNP
rs1358360794 1000 dbSNP
rs144083555 1005 dbSNP
rs1028222153 1006 dbSNP
rs1210526348 1007 dbSNP
rs772748962 1012 dbSNP
rs1300712274 1016 dbSNP
rs74140959 1021 dbSNP
rs762166638 1022 dbSNP
rs1803140 1025 dbSNP
rs575222805 1030 dbSNP
rs1344806962 1036 dbSNP
rs1304496677 1045 dbSNP
rs986632635 1047 dbSNP
rs1434818670 1048 dbSNP
rs912403915 1049 dbSNP
rs1013122804 1052 dbSNP
rs550219266 1053 dbSNP
rs972912581 1063 dbSNP
rs919574631 1066 dbSNP
rs907301461 1069 dbSNP
rs931001114 1070 dbSNP
rs1430995930 1071 dbSNP
rs1044632409 1072 dbSNP
rs1193939697 1073 dbSNP
rs1002931958 1082 dbSNP
rs1220002971 1084 dbSNP
rs1188155109 1093 dbSNP
rs1026743246 1095 dbSNP
rs1487485060 1096 dbSNP
rs906152682 1098 dbSNP
rs950708696 1099 dbSNP
rs747474293 1100 dbSNP
rs112104801 1101 dbSNP
rs373235197 1103 dbSNP
rs1451550863 1105 dbSNP
rs1803041 1106 dbSNP
rs1022158289 1109 dbSNP
rs1247945739 1120 dbSNP
rs904507535 1124 dbSNP
rs1157613408 1129 dbSNP
rs1378128189 1134 dbSNP
rs975240317 1136 dbSNP
rs1388034120 1137 dbSNP
rs1428737389 1137 dbSNP
rs996621285 1146 dbSNP
rs1180102932 1147 dbSNP
rs560178180 1147 dbSNP
rs933746690 1149 dbSNP
rs1364793800 1154 dbSNP
rs149161835 1168 dbSNP
rs1204643513 1179 dbSNP
rs1340274989 1184 dbSNP
rs986531636 1186 dbSNP
rs1321558315 1188 dbSNP
rs924272189 1188 dbSNP
rs953931155 1189 dbSNP
rs1311138016 1192 dbSNP
rs1398307238 1195 dbSNP
rs1325489184 1196 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 375.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000540651.1 | 3UTR | UUUUUAACCCAAACUCAGUGCAUUUUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000540651.1 | 3UTR | UUGGUUUUUAACCCAAACUCAGUGCAUUUUUUAAAAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
269 hsa-miR-548ah-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055349 PDCD4 programmed cell death 4 2 2
MIRT078710 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT088880 FOXN2 forkhead box N2 2 10
MIRT099612 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT111805 MPZL1 myelin protein zero like 1 2 2
MIRT166778 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT221310 LMBR1 limb development membrane protein 1 2 2
MIRT269387 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT309062 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318550 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT325436 CKS2 CDC28 protein kinase regulatory subunit 2 2 2
MIRT331326 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT336802 ARF1 ADP ribosylation factor 1 2 4
MIRT350505 MRGBP MRG domain binding protein 2 6
MIRT374401 M6PR mannose-6-phosphate receptor, cation dependent 2 4
MIRT399357 IER2 immediate early response 2 2 2
MIRT401033 MOB1B MOB kinase activator 1B 2 4
MIRT441729 HAUS6 HAUS augmin like complex subunit 6 2 2
MIRT442381 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442407 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT443989 GJD3 gap junction protein delta 3 2 4
MIRT444047 APOPT1 apoptogenic 1, mitochondrial 2 2
MIRT444245 CHMP1B charged multivesicular body protein 1B 2 2
MIRT444402 FRMD5 FERM domain containing 5 2 2
MIRT444463 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444644 HSBP1 heat shock factor binding protein 1 2 2
MIRT444854 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT444988 C15orf52 chromosome 15 open reading frame 52 2 2
MIRT445107 ZNF207 zinc finger protein 207 2 2
MIRT445449 HSPA14 heat shock protein family A (Hsp70) member 14 2 4
MIRT445515 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 4
MIRT445590 RCC2 regulator of chromosome condensation 2 2 2
MIRT445679 TNFSF15 TNF superfamily member 15 2 2
MIRT445733 PGK1 phosphoglycerate kinase 1 2 2
MIRT445827 DNAAF3 dynein axonemal assembly factor 3 2 2
MIRT445996 CD1D CD1d molecule 2 2
MIRT446068 RABIF RAB interacting factor 2 2
MIRT446146 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 2 2
MIRT446302 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446426 ABHD2 abhydrolase domain containing 2 2 2
MIRT447263 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447692 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT447753 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT447883 LMAN1 lectin, mannose binding 1 2 2
MIRT448032 GSR glutathione-disulfide reductase 2 2
MIRT448155 P2RY10 purinergic receptor P2Y10 2 2
MIRT448215 SNAI2 snail family transcriptional repressor 2 2 2
MIRT448414 TNFAIP3 TNF alpha induced protein 3 2 2
MIRT448890 DENND4C DENN domain containing 4C 2 2
MIRT449043 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449269 PALM2 paralemmin 2 2 2
MIRT449571 GPC5 glypican 5 2 4
MIRT450116 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450149 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT450606 EXOC2 exocyst complex component 2 2 2
MIRT459247 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT464464 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465114 TSC22D2 TSC22 domain family member 2 2 4
MIRT466778 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT467990 SKIL SKI like proto-oncogene 2 4
MIRT469263 RHOB ras homolog family member B 2 2
MIRT470717 POGK pogo transposable element derived with KRAB domain 2 2
MIRT472380 NEK7 NIMA related kinase 7 2 2
MIRT475022 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT475248 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 2 2
MIRT475678 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT479405 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT482621 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT490488 FEM1C fem-1 homolog C 2 2
MIRT492176 SOX4 SRY-box 4 2 10
MIRT493559 HSPA5 heat shock protein family A (Hsp70) member 5 2 2
MIRT494647 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497510 ZNF652 zinc finger protein 652 2 4
MIRT499150 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502081 KRAS KRAS proto-oncogene, GTPase 2 2
MIRT502824 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT503936 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504229 MYO6 myosin VI 2 2
MIRT506016 PURA purine rich element binding protein A 2 2
MIRT506416 NHLRC3 NHL repeat containing 3 2 6
MIRT508022 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508293 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT508358 HES7 hes family bHLH transcription factor 7 2 6
MIRT510848 RARB retinoic acid receptor beta 2 6
MIRT511509 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT511980 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 4
MIRT512301 AMER1 APC membrane recruitment protein 1 2 6
MIRT515651 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518423 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT519692 ZNF620 zinc finger protein 620 2 2
MIRT521598 PSMA2 proteasome subunit alpha 2 2 4
MIRT527241 ICOSLG inducible T-cell costimulator ligand 2 2
MIRT527279 FBLN2 fibulin 2 2 2
MIRT527377 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527448 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528342 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529098 ZNF100 zinc finger protein 100 2 2
MIRT529661 ZNF81 zinc finger protein 81 2 2
MIRT530057 TRIM72 tripartite motif containing 72 2 2
MIRT530271 MKRN3 makorin ring finger protein 3 2 2
MIRT530873 TRUB1 TruB pseudouridine synthase family member 1 2 2
MIRT531246 FANCC Fanconi anemia complementation group C 2 2
MIRT531408 TMEM18 transmembrane protein 18 2 2
MIRT534421 SEMA4F ssemaphorin 4F 2 2
MIRT534500 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT534765 RASGEF1A RasGEF domain family member 1A 2 2
MIRT534942 PTBP3 polypyrimidine tract binding protein 3 2 2
MIRT536972 HAS3 hyaluronan synthase 3 2 2
MIRT537633 ERI1 exoribonuclease 1 2 2
MIRT537720 ELK3 ELK3, ETS transcription factor 2 2
MIRT538772 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT540958 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541274 GPC4 glypican 4 2 4
MIRT543347 ZNF829 zinc finger protein 829 2 2
MIRT543617 MFAP3 microfibril associated protein 3 2 2
MIRT543644 YY2 YY2 transcription factor 2 2
MIRT544227 GTF2B general transcription factor IIB 2 2
MIRT544413 ZSCAN12 zinc finger and SCAN domain containing 12 2 2
MIRT544939 SNCB synuclein beta 2 2
MIRT545321 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546088 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548516 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 2 2
MIRT548632 DAZAP1 DAZ associated protein 1 2 4
MIRT551028 SPPL3 signal peptide peptidase like 3 2 2
MIRT552058 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT553268 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553297 TSPAN3 tetraspanin 3 2 2
MIRT553613 TM7SF3 transmembrane 7 superfamily member 3 2 2
MIRT554201 SLC35D1 solute carrier family 35 member D1 2 2
MIRT554795 RGPD4 RANBP2-like and GRIP domain containing 4 2 2
MIRT554838 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT555709 PDZD8 PDZ domain containing 8 2 2
MIRT556063 MTF2 metal response element binding transcription factor 2 2 4
MIRT557999 FAM160B1 family with sequence similarity 160 member B1 2 2
MIRT558674 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT558954 CBFB core-binding factor beta subunit 2 2
MIRT559026 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559103 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559858 GSKIP GSK3B interacting protein 2 2
MIRT561591 SKI SKI proto-oncogene 2 2
MIRT562262 GRB2 growth factor receptor bound protein 2 2 2
MIRT562413 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562646 ARID1A AT-rich interaction domain 1A 2 4
MIRT564273 DEPDC1B DEP domain containing 1B 2 2
MIRT565301 TMEM64 transmembrane protein 64 2 2
MIRT565392 TGFBR3 transforming growth factor beta receptor 3 2 2
MIRT566564 OTUD4 OTU deubiquitinase 4 2 2
MIRT566708 MTMR3 myotubularin related protein 3 2 2
MIRT566784 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 2
MIRT568411 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT571817 PHF19 PHD finger protein 19 2 2
MIRT571989 HOXA9 homeobox A9 2 2
MIRT573750 KHSRP KH-type splicing regulatory protein 2 2
MIRT573993 DDX21 DExD-box helicase 21 2 2
MIRT574488 RPS16 ribosomal protein S16 2 2
MIRT574507 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574553 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576680 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608353 ZRANB1 zinc finger RANBP2-type containing 1 2 2
MIRT608634 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609179 ZNF581 zinc finger protein 581 2 2
MIRT609792 NHSL1 NHS like 1 2 2
MIRT610675 SYT2 synaptotagmin 2 2 4
MIRT610880 NUDCD3 NudC domain containing 3 2 2
MIRT611024 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611670 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT612067 PDGFRA platelet derived growth factor receptor alpha 2 2
MIRT612486 SLC25A11 solute carrier family 25 member 11 2 2
MIRT612648 PSPC1 paraspeckle component 1 2 2
MIRT612688 PLXNA4 plexin A4 2 2
MIRT613108 ESR1 estrogen receptor 1 2 2
MIRT613549 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614532 SUB1 SUB1 homolog, transcriptional regulator 2 2
MIRT614569 GMPR guanosine monophosphate reductase 2 2
MIRT614661 ZNF608 zinc finger protein 608 2 2
MIRT614675 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT615313 CCDC158 coiled-coil domain containing 158 2 2
MIRT616112 GGCX gamma-glutamyl carboxylase 2 2
MIRT617750 MICA MHC class I polypeptide-related sequence A 2 2
MIRT618797 ZIC2 Zic family member 2 2 2
MIRT619227 FUNDC2 FUN14 domain containing 2 2 2
MIRT620281 SLCO3A1 solute carrier organic anion transporter family member 3A1 2 2
MIRT620491 XKR6 XK related 6 2 2
MIRT622613 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT622967 OXSR1 oxidative stress responsive 1 2 2
MIRT623482 KDM5A lysine demethylase 5A 2 2
MIRT623626 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT623699 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT624815 ADAM17 ADAM metallopeptidase domain 17 2 2
MIRT625188 GRIK4 glutamate ionotropic receptor kainate type subunit 4 2 2
MIRT625367 CDKL2 cyclin dependent kinase like 2 2 2
MIRT625919 GBP6 guanylate binding protein family member 6 2 2
MIRT625962 RNF2 ring finger protein 2 2 2
MIRT626264 CLN8 CLN8, transmembrane ER and ERGIC protein 2 2
MIRT626425 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 2 2
MIRT626851 FDX1 ferredoxin 1 2 2
MIRT628014 MEF2C myocyte enhancer factor 2C 2 2
MIRT628047 LIMD1 LIM domains containing 1 2 2
MIRT628360 CCDC117 coiled-coil domain containing 117 2 2
MIRT628461 ANAPC16 anaphase promoting complex subunit 16 2 2
MIRT630929 UNC93A unc-93 homolog A 2 2
MIRT635226 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT635478 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT638149 TTC26 tetratricopeptide repeat domain 26 2 2
MIRT638295 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638431 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640275 TCF24 transcription factor 24 2 2
MIRT641183 STX4 syntaxin 4 2 2
MIRT642295 ZNF99 zinc finger protein 99 2 2
MIRT643270 ZNF566 zinc finger protein 566 2 2
MIRT643581 CTNNA3 catenin alpha 3 2 2
MIRT644173 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644433 VDR vitamin D receptor 2 2
MIRT644614 C17orf77 chromosome 17 open reading frame 77 2 2
MIRT644855 PGM2 phosphoglucomutase 2 2 2
MIRT645449 ATF6B activating transcription factor 6 beta 2 2
MIRT647203 ZNF583 zinc finger protein 583 2 2
MIRT649421 CDC14B cell division cycle 14B 2 2
MIRT650499 UFM1 ubiquitin fold modifier 1 2 2
MIRT650695 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651209 ZNF280B zinc finger protein 280B 2 2
MIRT653782 SIX4 SIX homeobox 4 2 2
MIRT655057 PKN2 protein kinase N2 2 2
MIRT655707 NUDT21 nudix hydrolase 21 2 2
MIRT656943 KIAA1456 KIAA1456 2 2
MIRT658275 FAXC failed axon connections homolog 2 2
MIRT658519 ETV3 ETS variant 3 2 2
MIRT658655 ENAH ENAH, actin regulator 2 2
MIRT658688 EMP2 epithelial membrane protein 2 2 2
MIRT659241 CXCR5 C-X-C motif chemokine receptor 5 2 2
MIRT659289 CTDSPL2 CTD small phosphatase like 2 2 2
MIRT660101 BTBD3 BTB domain containing 3 2 2
MIRT660463 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT663648 INTU inturned planar cell polarity protein 2 2
MIRT664065 KIAA1551 KIAA1551 2 2
MIRT666140 SPATS2L spermatogenesis associated serine rich 2 like 2 2
MIRT675549 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT684998 RPL10A ribosomal protein L10a 2 2
MIRT685687 TRIM45 tripartite motif containing 45 2 2
MIRT687485 NHLRC2 NHL repeat containing 2 2 2
MIRT687799 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687911 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT687962 HHIP hedgehog interacting protein 2 2
MIRT689214 ZNF574 zinc finger protein 574 2 2
MIRT689481 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT690495 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692284 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693054 KIAA1324 KIAA1324 2 2
MIRT697437 ZFHX3 zinc finger homeobox 3 2 2
MIRT698469 TJP1 tight junction protein 1 2 2
MIRT699027 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699779 SEMA4D semaphorin 4D 2 2
MIRT701863 MRO maestro 2 2
MIRT702152 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT702235 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT703744 FAM126B family with sequence similarity 126 member B 2 2
MIRT704271 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707745 MRPS10 mitochondrial ribosomal protein S10 2 2
MIRT709855 SNX12 sorting nexin 12 2 2
MIRT712741 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712948 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713142 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715529 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT718275 ZNF749 zinc finger protein 749 2 2
MIRT720146 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT722713 ZNF460 zinc finger protein 460 2 2
MIRT723253 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT724240 DGKE diacylglycerol kinase epsilon 2 2
MIRT725076 WTIP WT1 interacting protein 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548ah-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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