miRTarBase - #MIRT340971


—
pre-miRNA Information
pre-miRNA hsa-mir-3678   
Genomic Coordinates chr17: 75406069 - 75406162
Description Homo sapiens miR-3678 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3678-3p
Sequence 69| CUGCAGAGUUUGUACGGACCGG |90
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs988363493 1 dbSNP
rs753118178 5 dbSNP
rs1424776090 14 dbSNP
rs1475188526 15 dbSNP
rs1163369708 17 dbSNP
rs1174219930 19 dbSNP
rs915488824 20 dbSNP
rs1273558782 21 dbSNP
rs755095016 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol IPO5   
Synonyms IMB3, KPNB3, Pse1, RANBP5, imp5
Description importin 5
Transcript NM_002271   
Expression
Putative miRNA Targets on IPO5
3'UTR of IPO5
(miRNA target sites are highlighted)		 
>IPO5|NM_002271|3'UTR
   1 AGGGCCTTAATGTCACCCACCAGAAAACTAACTCCAAATAAACGCTTACCCTTTCCTTTAGGTTTCTTTGTTTTGTTTTT
  81 GAGCAAAAGAGATCGGTAGTGTTGTGTGTAGGCCATTCTTCTGGAGAGCCACAAGCAGGAAGAGCAGCGCTGTGTTGCAG
 161 AATGGAGTTTCCATGGATTTCTACCAGACCACTGAAGGAGTTCCTGGAAGCCCTGCGGTAGCTAGCACTGAAGACTATTT
 241 TTCTATTGGTATAACCCGCCCACCTGAAGGGGAAAGGGAAATCAAATTAATTTTTCTCGTTAGACATAAGGAAATTTAAG
 321 GAAAAACAGCTTTAAGAACAGTTACTCAGCGTAGATGTGTGTTCACACAAATTGCTCTGCATTCAGTGTTCATTGTGAAT
 401 TGGGAGTGTGAGTCTTTCTGTAGGGTAGAAAGAAGCCTCCTACCCAGCAAACCAGTAGACCCAAAAGTTGAAAAAAACTG
 481 ATGACAGACAACAAGCATGAAGATGGCATATTTGATGTCACTTTGGTTCTTTTTCCCAGAAGGCTTATACAGTGACTCAG
 561 TCGGGAAGCTTTCCAGCTTCCAGCCCTTGAATGTGAAGTGTCATTGGCATGTCTGGCAGTAGTCTCTCATTCACTCCTCA
 641 ATAAACAACATTGAATACAAAAGAGGCTTGTGTAAAAACTCAGTACTGTCTGGCTTGGATTCATTTCATGTTTTTAATAT
 721 AAGAATGATCTAATATTTTTTTAAAGTAATAGCTATCAGTAATAGCTGAGTGTTTTTTCCCCTAATATTTTCCTTGTGCA
 801 ATTCAGACTTAAGCATCGAGTTTTTACCATCTTCCACTTTAAGCTAAGTTATGATACCTATTCCATTCACAATTGGTGTT
 881 CTTTTTAAGGTTTGCAAATTTCAGCCAATTTTGTAGCTAAGATTGTTCTGATCAGCTCAAAAAGATTTGGCTTAGTGTTT
 961 TCATTGCAAATTATAATTGCTGTAGAGCCACACACAACTTTTGAACTTTTAATTATAAGTGTTATGGCTAAAGTTATTTA
1041 CTGAAAATTTCAGTAAAATGTGTGAATGTTTCTTTATGTATTAACCTCATAGCAGTAAATGACTTGCTGTTGTTTAATTT
1121 TTCTAAGGCATCTTAATAGACTTCTGTTGAAAACTTCAGTGTTAACATTTTTATAGTTTGTACTAAATTTAACCGTGATA
1201 TAAAAATGAATTTTATGCATAGATCAGAATTTTAAATTAAAGGTTTTTTCTTTAAATGATTTGTATTACTTTATTAAAAC
1281 TAAATCTGAAATGGAATAGAAAATAGAATGGATTACATACAGATGGTTTCCTTGTTAGCAGATGCCCTTCAAATATATTT
1361 TACGTTTGCAGCACAACACCATTGCCCGGAGGCTTCCGAATCTAGCAAAGCAGCATATTAAATGACTCCACCTGCGCAGT
1441 CCTTGTGTTCAGTGGATGAATACCTGTGGGCTCTTGTAATGTGTGGTAATATTTGGAGCTTTATAGCCTGTATTCCTTGG
1521 GAGAAAAAAATGGGAATTGGAGTAAAAAGTGTGTCAAGACAACCCCTTTCTGCTTTCTTATGTAGCATCTGCAAAGCCGA
1601 TTCATGTACTGATGCCAATCAGCTAGAGCAATGTAGGCTTTTTTTAATTTAAATTATTACTACACTTTATTACTACACTT
1681 GCAGAAAAGAAACATGTTAAAATCATGGCACACCTGCAGAATTTCAGATGACAGTGTGGTCAGAAGATGTTTTTTGGGAG
1761 AACCTAGTGTTTGCTGGGCACTATGCTAAGCACTTTGGGAGCAAGAACCTCCTACCTTCCAGTTTAAACACTAGTGGTAT
1841 TGTCAGATGCCGTTAGTATCTGAGATGTACTTACAGCAGGGTTCTAAGAGCTCTGAAAGAAGCGCTCTGTTAGATGCAGA
1921 CTGGCAGCATCCTCCTTGATAAAAGCAGAAAAGCAAAGAGGTAATTGGAGTTGAATCAAGTTAATAGGGAAGGTTGGTAG
2001 TAAATGCTGTTAGTGTGACATGATTCTGAAACCCAGAGCTCAGAACTAACTGTGAGATGTACCATGAACTAACAATTCTT
2081 TGAAAGGACCTGCAGAAGCATTTTTAATACCTCATTCTGTCTATGCAAGATGAAAATCCATGGAGTTTTTTCTTGGCTTT
2161 TGTACCAAATTTAGGGGTCTTGCATGTCAGCAAGTGATATATATTGTTTATAAATGCAAGCTATTTCTGGAGGGGAAAAA
2241 TGTGTGTGGCTCTTACGTTTTCTGGGAATTTTGTAACAAGTTACACGCACAAGTGTTAGAAACTTTGGCATAACTCAATT
2321 TGGAGTATTTTTTAAATGCTGTATCTTTAAAGAAAAGTAAAATTGTCTTAAATCTAATTGACACTTCTGTAATGAGAGGC
2401 AACCTTATAACTCTGGAGTTGTAGTTTGACAGAACCATCAGTAAAGACATAAGCAAATAAATGGTCTTGGTGCAAAAAAA
2481 AAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ggcCAGGCAUGUUU---GAGACGUc 5'
             ||:|  |||||   ||||||| 
Target 5' tgtGTTCACACAAATTGCTCTGCAt 3'
 358 - 382 163.00 -14.80
2 
miRNA  3' ggCCAGGCAUGUUUGAGACGUc 5'
            |||:| || :|:||||| | 
Target 5' agGGTTC-TAAGAGCTCTGAAa 3'
 1878 - 1898 135.00 -15.42
3 
miRNA  3' ggccaGGCAUGUUUGAGACGUc 5'
               || ||: ||||||| | 
Target 5' ggcaaCCTTAT-AACTCTGGAg 3'
 2398 - 2418 128.00 -15.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM5703104 1 COSMIC
COSN30464963 22 COSMIC
COSN30161470 29 COSMIC
COSN31560109 33 COSMIC
COSN30460143 35 COSMIC
COSN30116594 43 COSMIC
COSN31553155 44 COSMIC
COSN30461409 56 COSMIC
COSN31605071 67 COSMIC
COSN24381612 78 COSMIC
COSN30529621 88 COSMIC
COSN30531290 94 COSMIC
COSN15661050 161 COSMIC
COSN25032849 351 COSMIC
COSN31486588 590 COSMIC
COSN23434287 1075 COSMIC
COSN30169476 1089 COSMIC
COSN31529646 1187 COSMIC
COSN26635722 1218 COSMIC
COSN28201710 1388 COSMIC
COSN16989170 1467 COSMIC
COSN1637419 1585 COSMIC
COSN1637420 1790 COSMIC
COSN16327477 2466 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1301193435 6 dbSNP
rs765604605 9 dbSNP
rs753069980 10 dbSNP
rs763223404 14 dbSNP
rs1348853829 16 dbSNP
rs1239558895 17 dbSNP
rs762851502 18 dbSNP
rs764235316 22 dbSNP
rs375725848 23 dbSNP
rs757279806 24 dbSNP
rs755680098 29 dbSNP
rs1262217948 43 dbSNP
rs371569334 44 dbSNP
rs750346781 45 dbSNP
rs1194725956 49 dbSNP
rs756075296 50 dbSNP
rs1481198342 51 dbSNP
rs1324155540 52 dbSNP
rs1319951668 59 dbSNP
rs1000367841 65 dbSNP
rs1055520447 66 dbSNP
rs78079018 78 dbSNP
rs74108124 95 dbSNP
rs566040512 96 dbSNP
rs1024137394 102 dbSNP
rs1243852657 103 dbSNP
rs1189473191 113 dbSNP
rs1461003458 122 dbSNP
rs1382617239 140 dbSNP
rs747241355 142 dbSNP
rs962300142 143 dbSNP
rs536652939 150 dbSNP
rs555073433 153 dbSNP
rs576627580 158 dbSNP
rs1213913284 161 dbSNP
rs1336881560 170 dbSNP
rs952045382 174 dbSNP
rs986181348 177 dbSNP
rs1381536739 178 dbSNP
rs910673013 179 dbSNP
rs966090229 184 dbSNP
rs543588419 188 dbSNP
rs377450511 192 dbSNP
rs914054008 206 dbSNP
rs1408655756 217 dbSNP
rs945639774 218 dbSNP
rs1169259246 221 dbSNP
rs1043956388 230 dbSNP
rs1334267307 240 dbSNP
rs1383675314 241 dbSNP
rs1185637991 244 dbSNP
rs1473691504 246 dbSNP
rs1237767730 252 dbSNP
rs1231683403 253 dbSNP
rs368926370 258 dbSNP
rs1486385095 259 dbSNP
rs1205303243 264 dbSNP
rs148623691 267 dbSNP
rs935614094 273 dbSNP
rs1247633357 278 dbSNP
rs1444577925 285 dbSNP
rs1380369299 286 dbSNP
rs1055468079 296 dbSNP
rs894265870 299 dbSNP
rs184306123 300 dbSNP
rs1309154305 301 dbSNP
rs1045617356 307 dbSNP
rs373476251 309 dbSNP
rs35683422 337 dbSNP
rs748144561 346 dbSNP
rs1417943648 348 dbSNP
rs993828303 351 dbSNP
rs142088737 352 dbSNP
rs1414284337 354 dbSNP
rs1404799980 355 dbSNP
rs1413763149 356 dbSNP
rs147800981 358 dbSNP
rs1288024919 367 dbSNP
rs1468381524 371 dbSNP
rs952050322 376 dbSNP
rs1007549068 381 dbSNP
rs1017545140 385 dbSNP
rs1397645774 400 dbSNP
rs777448834 406 dbSNP
rs1321909724 418 dbSNP
rs1283085449 437 dbSNP
rs1313480413 438 dbSNP
rs1354888791 439 dbSNP
rs550063500 444 dbSNP
rs1404801905 447 dbSNP
rs1343731449 455 dbSNP
rs1304978927 471 dbSNP
rs1344869591 488 dbSNP
rs1458630739 488 dbSNP
rs1021554824 489 dbSNP
rs966870558 492 dbSNP
rs1413817111 493 dbSNP
rs1159832514 500 dbSNP
rs1480042189 503 dbSNP
rs1266193019 504 dbSNP
rs1290413532 506 dbSNP
rs376467355 511 dbSNP
rs925600076 520 dbSNP
rs1259260972 521 dbSNP
rs938238374 525 dbSNP
rs1347661100 528 dbSNP
rs189259297 535 dbSNP
rs1223461260 539 dbSNP
rs1257489170 543 dbSNP
rs1304010887 545 dbSNP
rs1485038299 548 dbSNP
rs193230725 553 dbSNP
rs1185101984 561 dbSNP
rs949792979 562 dbSNP
rs1252082143 563 dbSNP
rs1287338997 564 dbSNP
rs1433087177 577 dbSNP
rs1045449771 578 dbSNP
rs897653714 586 dbSNP
rs773613044 587 dbSNP
rs1427178364 590 dbSNP
rs185686866 592 dbSNP
rs1433338999 593 dbSNP
rs1032623766 606 dbSNP
rs1184416126 609 dbSNP
rs1361848493 609 dbSNP
rs929192394 622 dbSNP
rs1049360741 634 dbSNP
rs1258347482 642 dbSNP
rs550559479 642 dbSNP
rs1007412678 643 dbSNP
rs1374816449 643 dbSNP
rs1017576135 647 dbSNP
rs1293464413 652 dbSNP
rs1230930746 657 dbSNP
rs901823823 660 dbSNP
rs997565402 668 dbSNP
rs955674543 671 dbSNP
rs1451725607 679 dbSNP
rs1399796141 694 dbSNP
rs1304522720 709 dbSNP
rs1466430916 711 dbSNP
rs1353434527 719 dbSNP
rs1432819383 721 dbSNP
rs189039711 731 dbSNP
rs1374153397 735 dbSNP
rs1020999394 736 dbSNP
rs143994580 736 dbSNP
rs771287522 736 dbSNP
rs774635377 738 dbSNP
rs967193556 740 dbSNP
rs979660725 744 dbSNP
rs1333166206 747 dbSNP
rs1032913126 750 dbSNP
rs1480570031 756 dbSNP
rs959637052 768 dbSNP
rs45592034 773 dbSNP
rs1346276847 779 dbSNP
rs1342949744 782 dbSNP
rs915586565 785 dbSNP
rs529821951 787 dbSNP
rs1252491050 792 dbSNP
rs1243973100 794 dbSNP
rs1338495323 795 dbSNP
rs949659497 797 dbSNP
rs1480713153 799 dbSNP
rs1395733262 801 dbSNP
rs1176254828 802 dbSNP
rs1431164430 812 dbSNP
rs1370631422 813 dbSNP
rs1162541993 814 dbSNP
rs1248040243 815 dbSNP
rs1455396519 816 dbSNP
rs879028363 817 dbSNP
rs981510041 818 dbSNP
rs528247861 819 dbSNP
rs1418835777 820 dbSNP
rs536615911 829 dbSNP
rs1249103640 834 dbSNP
rs554987515 841 dbSNP
rs1483423782 845 dbSNP
rs1291051490 853 dbSNP
rs74738826 854 dbSNP
rs1358693072 856 dbSNP
rs929034948 859 dbSNP
rs1048909983 861 dbSNP
rs181757962 874 dbSNP
rs1411512207 877 dbSNP
rs1355172947 879 dbSNP
rs943303823 882 dbSNP
rs1301946387 885 dbSNP
rs1461585734 886 dbSNP
rs1384534758 888 dbSNP
rs1392492294 894 dbSNP
rs1163463599 895 dbSNP
rs116933592 898 dbSNP
rs1162013198 909 dbSNP
rs901854809 910 dbSNP
rs763735890 912 dbSNP
rs1393092791 929 dbSNP
rs186108343 931 dbSNP
rs1303064541 932 dbSNP
rs1021368431 936 dbSNP
rs577321373 941 dbSNP
rs1349692563 946 dbSNP
rs1265945594 953 dbSNP
rs1230182883 957 dbSNP
rs534927158 960 dbSNP
rs902627590 961 dbSNP
rs1282533648 968 dbSNP
rs1230508332 975 dbSNP
rs1323810300 979 dbSNP
rs1381241471 980 dbSNP
rs1386930066 981 dbSNP
rs553215298 988 dbSNP
rs1001341465 993 dbSNP
rs747519687 996 dbSNP
rs761208748 998 dbSNP
rs1307542975 1003 dbSNP
rs959491642 1004 dbSNP
rs1378209492 1007 dbSNP
rs764758482 1008 dbSNP
rs1249147706 1009 dbSNP
rs574774882 1017 dbSNP
rs1305708324 1022 dbSNP
rs1213933294 1024 dbSNP
rs542142877 1026 dbSNP
rs1250098277 1028 dbSNP
rs1025267736 1029 dbSNP
rs1210408507 1030 dbSNP
rs970958596 1031 dbSNP
rs140050880 1040 dbSNP
rs1420184490 1053 dbSNP
rs918899029 1054 dbSNP
rs750359775 1057 dbSNP
rs1226283076 1061 dbSNP
rs1362638283 1077 dbSNP
rs1168349381 1081 dbSNP
rs1299333163 1082 dbSNP
rs575992833 1087 dbSNP
rs1420128671 1090 dbSNP
rs1405806519 1095 dbSNP
rs1332777056 1097 dbSNP
rs769082952 1101 dbSNP
rs1462104957 1103 dbSNP
rs1325564378 1108 dbSNP
rs950514304 1111 dbSNP
rs1054272 1124 dbSNP
rs1433390992 1137 dbSNP
rs1447709262 1137 dbSNP
rs752994674 1138 dbSNP
rs543467818 1145 dbSNP
rs564834525 1146 dbSNP
rs1236621188 1154 dbSNP
rs758346827 1159 dbSNP
rs909059117 1160 dbSNP
rs943168004 1168 dbSNP
rs766290954 1184 dbSNP
rs188527280 1195 dbSNP
rs547630474 1196 dbSNP
rs1233508982 1198 dbSNP
rs559623399 1214 dbSNP
rs1272205913 1223 dbSNP
rs529996215 1226 dbSNP
rs1382515503 1232 dbSNP
rs1042417407 1238 dbSNP
rs1450595051 1240 dbSNP
rs1341641705 1244 dbSNP
rs147727454 1244 dbSNP
rs1427977298 1247 dbSNP
rs1000971714 1283 dbSNP
rs1424198331 1304 dbSNP
rs1412835702 1320 dbSNP
rs1053829607 1322 dbSNP
rs895227135 1327 dbSNP
rs1238041463 1328 dbSNP
rs141089966 1332 dbSNP
rs1481790715 1335 dbSNP
rs1276084259 1338 dbSNP
rs755290293 1341 dbSNP
rs1485468607 1345 dbSNP
rs1184716091 1346 dbSNP
rs781248913 1356 dbSNP
rs1420112216 1357 dbSNP
rs1475612476 1362 dbSNP
rs79485876 1364 dbSNP
rs538734124 1365 dbSNP
rs970991554 1372 dbSNP
rs756177867 1377 dbSNP
rs570870404 1379 dbSNP
rs1308669675 1382 dbSNP
rs1160230101 1383 dbSNP
rs1404373366 1388 dbSNP
rs994803391 1389 dbSNP
rs1025992169 1392 dbSNP
rs535151362 1399 dbSNP
rs553127204 1401 dbSNP
rs1158354306 1403 dbSNP
rs1414172101 1403 dbSNP
rs1471542216 1409 dbSNP
rs574735485 1417 dbSNP
rs1182331635 1428 dbSNP
rs1487865590 1429 dbSNP
rs1223225718 1436 dbSNP
rs984561055 1437 dbSNP
rs535735273 1457 dbSNP
rs1267841228 1464 dbSNP
rs909006533 1465 dbSNP
rs1356792105 1471 dbSNP
rs1331887607 1477 dbSNP
rs552342017 1478 dbSNP
rs1292165836 1479 dbSNP
rs1365579964 1480 dbSNP
rs1295512747 1487 dbSNP
rs777839192 1493 dbSNP
rs1225126899 1496 dbSNP
rs971310759 1507 dbSNP
rs1350278266 1511 dbSNP
rs1284607974 1524 dbSNP
rs181341764 1528 dbSNP
rs575948590 1531 dbSNP
rs1414167198 1544 dbSNP
rs1213545092 1558 dbSNP
rs1432094497 1561 dbSNP
rs9517161 1566 dbSNP
rs1192588913 1574 dbSNP
rs1486024378 1577 dbSNP
rs1246991940 1579 dbSNP
rs1207276246 1580 dbSNP
rs1466522892 1580 dbSNP
rs933272950 1582 dbSNP
rs1042670083 1586 dbSNP
rs1187261756 1590 dbSNP
rs1220067775 1598 dbSNP
rs1255523073 1599 dbSNP
rs771410284 1600 dbSNP
rs1432717001 1604 dbSNP
rs936705264 1613 dbSNP
rs1465438356 1615 dbSNP
rs1356959939 1627 dbSNP
rs1433237143 1629 dbSNP
rs1471302013 1630 dbSNP
rs774760050 1631 dbSNP
rs1053777141 1632 dbSNP
rs185978866 1634 dbSNP
rs878933815 1639 dbSNP
rs895258543 1639 dbSNP
rs572454965 1654 dbSNP
rs150281739 1663 dbSNP
rs1482541106 1665 dbSNP
rs1434662525 1678 dbSNP
rs1258252914 1687 dbSNP
rs1311680425 1691 dbSNP
rs537852141 1694 dbSNP
rs746204154 1705 dbSNP
rs906665114 1718 dbSNP
rs1230811693 1722 dbSNP
rs541157389 1723 dbSNP
rs1372321634 1740 dbSNP
rs1237745661 1742 dbSNP
rs1282240653 1743 dbSNP
rs768351245 1746 dbSNP
rs1348440319 1774 dbSNP
rs1026279010 1775 dbSNP
rs1166346900 1778 dbSNP
rs1431205341 1779 dbSNP
rs190898981 1789 dbSNP
rs1187335849 1792 dbSNP
rs1278204335 1793 dbSNP
rs145708560 1802 dbSNP
rs1182770963 1803 dbSNP
rs1232561955 1804 dbSNP
rs1182883476 1808 dbSNP
rs1482776431 1816 dbSNP
rs1249648608 1819 dbSNP
rs1207594434 1822 dbSNP
rs1468826291 1823 dbSNP
rs1343187678 1826 dbSNP
rs1265057969 1830 dbSNP
rs1195831221 1834 dbSNP
rs1319702127 1838 dbSNP
rs78905111 1844 dbSNP
rs563456209 1848 dbSNP
rs74627834 1853 dbSNP
rs964455736 1858 dbSNP
rs1396829245 1865 dbSNP
rs761490200 1870 dbSNP
rs974443614 1873 dbSNP
rs1456716872 1875 dbSNP
rs17190392 1876 dbSNP
rs954668861 1877 dbSNP
rs959466521 1883 dbSNP
rs41279108 1885 dbSNP
rs1184494409 1887 dbSNP
rs1483414111 1888 dbSNP
rs148930064 1889 dbSNP
rs1208221066 1904 dbSNP
rs1487391718 1905 dbSNP
rs936585707 1906 dbSNP
rs1411205526 1908 dbSNP
rs1328442123 1914 dbSNP
rs989503438 1918 dbSNP
rs1329087477 1929 dbSNP
rs1229761732 1936 dbSNP
rs984150250 1946 dbSNP
rs1322488650 1947 dbSNP
rs916560852 1957 dbSNP
rs1305286245 1960 dbSNP
rs534787974 1964 dbSNP
rs948130868 1966 dbSNP
rs546727567 1967 dbSNP
rs1387165813 1986 dbSNP
rs1161992830 1988 dbSNP
rs1470558186 1990 dbSNP
rs1377085331 1997 dbSNP
rs906703908 2003 dbSNP
rs930177204 2007 dbSNP
rs1233455240 2015 dbSNP
rs1214149936 2033 dbSNP
rs1464264732 2035 dbSNP
rs879060333 2037 dbSNP
rs1266237360 2040 dbSNP
rs1047219740 2042 dbSNP
rs1341523071 2044 dbSNP
rs1350789728 2044 dbSNP
rs888726195 2045 dbSNP
rs1332508655 2050 dbSNP
rs369184420 2051 dbSNP
rs766415886 2055 dbSNP
rs1215789340 2060 dbSNP
rs1323157403 2065 dbSNP
rs1401748783 2066 dbSNP
rs779463923 2072 dbSNP
rs1005742750 2076 dbSNP
rs568272105 2079 dbSNP
rs751448313 2089 dbSNP
rs1395981941 2090 dbSNP
rs759425542 2093 dbSNP
rs1375331609 2094 dbSNP
rs1448651675 2099 dbSNP
rs1424404272 2103 dbSNP
rs1245910704 2109 dbSNP
rs767303199 2115 dbSNP
rs1447553598 2124 dbSNP
rs995892466 2125 dbSNP
rs1198284606 2127 dbSNP
rs1346499019 2128 dbSNP
rs1280600281 2140 dbSNP
rs1227142547 2143 dbSNP
rs1030532854 2144 dbSNP
rs954476510 2146 dbSNP
rs1418183795 2153 dbSNP
rs535658928 2155 dbSNP
rs557607312 2163 dbSNP
rs1332756853 2165 dbSNP
rs1397929712 2166 dbSNP
rs1376078762 2169 dbSNP
rs1428018931 2176 dbSNP
rs1392222118 2188 dbSNP
rs1030814402 2201 dbSNP
rs1236897051 2204 dbSNP
rs1394913745 2204 dbSNP
rs909898233 2216 dbSNP
rs957958766 2218 dbSNP
rs989367486 2220 dbSNP
rs1328078589 2224 dbSNP
rs1339689051 2233 dbSNP
rs878972682 2239 dbSNP
rs1276312265 2241 dbSNP
rs916591853 2242 dbSNP
rs1228076965 2246 dbSNP
rs1165543805 2250 dbSNP
rs758998261 2255 dbSNP
rs1356209003 2256 dbSNP
rs1450742780 2256 dbSNP
rs947995508 2257 dbSNP
rs982107499 2258 dbSNP
rs1410324790 2260 dbSNP
rs928073481 2263 dbSNP
rs1161418665 2264 dbSNP
rs754707111 2278 dbSNP
rs1476125014 2279 dbSNP
rs930063284 2280 dbSNP
rs1047701550 2281 dbSNP
rs1481779457 2286 dbSNP
rs888600441 2287 dbSNP
rs941631468 2288 dbSNP
rs1451409055 2295 dbSNP
rs568453025 2296 dbSNP
rs1288118657 2304 dbSNP
rs35642295 2304 dbSNP
rs41279110 2306 dbSNP
rs900181639 2307 dbSNP
rs1448023786 2312 dbSNP
rs1193107974 2314 dbSNP
rs145672796 2319 dbSNP
rs1051423691 2329 dbSNP
rs1352338834 2331 dbSNP
rs1476582006 2334 dbSNP
rs890223333 2335 dbSNP
rs1349122889 2339 dbSNP
rs1166606090 2341 dbSNP
rs1462802861 2349 dbSNP
rs1395208248 2357 dbSNP
rs1158329684 2365 dbSNP
rs1409461889 2384 dbSNP
rs999257518 2384 dbSNP
rs138339798 2401 dbSNP
rs1477514041 2403 dbSNP
rs1460616760 2406 dbSNP
rs1244597981 2419 dbSNP
rs1216004908 2432 dbSNP
rs1161178752 2433 dbSNP
rs1469185114 2449 dbSNP
rs1031264940 2455 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 3843.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065667. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggccAGGCAUGUUU---GAGACGUc 5'
              |:|  |||||   ||||||| 
Target 5' ----UUCACACAAAUUGCUCUGCAu 3'
 		1 - 21
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_002271 | 3UTR | AGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002271 | 3UTR | AAAUCAAAUUAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_002271 | 3UTR | AAGGGAAAUCAAAUUAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002271 | 3UTR | CAAAUUAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002271 | 3UTR | AGGGAAAUCAAAUUAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002271 | 3UTR | UAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002271 | 3UTR | AAUCAAAUUAAUUUUUCUCGUUAGACAUAAGGAAAUUUAAGGAAAAACAGCUUUAAGAACAGUUACUCAGCGUAGAUGUGUGUUCACACAAAUUGCUCUGCAUUCAGUGUUCAUUGUGAAUUGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1065667
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_6
Location of target site ENST00000261574.5 | 3UTR | UUCACACAAAUUGCUCUGCAUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC 0.414 0.1 0.491 0.06 11 Click to see details
LUSC -0.594 0.2 -0.800 0.1 4 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
LIHC 0.12 0.38 0.100 0.4 9 Click to see details
86 hsa-miR-3678-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074327 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT107705 CLTA clathrin light chain A 2 2
MIRT114113 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT155293 IFNAR2 interferon alpha and beta receptor subunit 2 2 4
MIRT159171 NRBP1 nuclear receptor binding protein 1 2 2
MIRT185795 ZNF678 zinc finger protein 678 2 2
MIRT282672 SYNM synemin 2 2
MIRT294386 ZNF264 zinc finger protein 264 2 2
MIRT295818 CHMP4B charged multivesicular body protein 4B 2 2
MIRT332777 CAPRIN1 cell cycle associated protein 1 2 4
MIRT334112 PPP6R3 protein phosphatase 6 regulatory subunit 3 2 2
MIRT340971 IPO5 importin 5 2 2
MIRT354679 CDV3 CDV3 homolog 2 2
MIRT366662 PLP2 proteolipid protein 2 2 2
MIRT404272 PLEKHA8 pleckstrin homology domain containing A8 2 2
MIRT447536 RNF165 ring finger protein 165 2 2
MIRT449139 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT451301 LGALS3BP galectin 3 binding protein 2 2
MIRT451488 FOPNL FGFR1OP N-terminal like 2 2
MIRT455198 GNL1 G protein nucleolar 1 (putative) 2 2
MIRT459215 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT461764 MPDU1 mannose-P-dolichol utilization defect 1 2 2
MIRT463273 ZFX zinc finger protein, X-linked 2 2
MIRT464862 UBB ubiquitin B 2 8
MIRT464950 TWIST1 twist family bHLH transcription factor 1 2 2
MIRT467378 SON SON DNA binding protein 2 4
MIRT469282 RHOA ras homolog family member A 2 2
MIRT470293 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT470639 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT477163 FABP3 fatty acid binding protein 3 2 2
MIRT477686 EFHD2 EF-hand domain family member D2 2 2
MIRT479725 CCNF cyclin F 2 2
MIRT481726 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT485673 CCDC64 BICD family like cargo adaptor 1 2 2
MIRT498280 PADI2 peptidyl arginine deiminase 2 2 2
MIRT499921 GPX8 glutathione peroxidase 8 (putative) 2 2
MIRT503616 SLC25A36 solute carrier family 25 member 36 2 4
MIRT506927 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT507348 FAM129A family with sequence similarity 129 member A 2 6
MIRT508265 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT508284 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT509353 COPS8 COP9 signalosome subunit 8 2 2
MIRT510892 RAB1A RAB1A, member RAS oncogene family 2 4
MIRT511882 GAS1 growth arrest specific 1 2 6
MIRT511990 E2F1 E2F transcription factor 1 2 4
MIRT512239 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT512392 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 4
MIRT514086 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 2 6
MIRT514358 UBBP4 ubiquitin B pseudogene 4 2 6
MIRT523149 HNRNPU heterogeneous nuclear ribonucleoprotein U 2 2
MIRT525511 FSIP2 fibrous sheath interacting protein 2 2 2
MIRT526333 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT529962 ZNF71 zinc finger protein 71 2 2
MIRT530337 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT530884 PHOX2A paired like homeobox 2a 2 2
MIRT533097 YOD1 YOD1 deubiquitinase 2 2
MIRT533250 VCAM1 vascular cell adhesion molecule 1 2 2
MIRT534786 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT537917 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT547799 JARID2 jumonji and AT-rich interaction domain containing 2 2 2
MIRT548714 CRK CRK proto-oncogene, adaptor protein 2 2
MIRT555509 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT555984 NFYB nuclear transcription factor Y subunit beta 2 2
MIRT557942 FAM222B family with sequence similarity 222 member B 2 2
MIRT560830 ZNF786 zinc finger protein 786 2 2
MIRT562720 ZNF714 zinc finger protein 714 2 2
MIRT565337 TMEM104 transmembrane protein 104 2 2
MIRT614453 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT639474 SLC6A4 solute carrier family 6 member 4 2 2
MIRT644056 IQCE IQ motif containing E 2 2
MIRT651652 VWA1 von Willebrand factor A domain containing 1 2 2
MIRT651866 UNC119B unc-119 lipid binding chaperone B 2 2
MIRT653490 SLC43A2 solute carrier family 43 member 2 2 2
MIRT657039 KCNJ6 potassium voltage-gated channel subfamily J member 6 2 2
MIRT657985 GAN gigaxonin 2 2
MIRT672117 ATP6V0A2 ATPase H+ transporting V0 subunit a2 2 2
MIRT683583 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT688689 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT695375 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT696351 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT700614 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT703512 FKBP15 FK506 binding protein 15 2 2
MIRT705051 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705180 BTG1 BTG anti-proliferation factor 1 2 2
MIRT709409 FBXL20 F-box and leucine rich repeat protein 20 2 2
MIRT721053 DCC DCC netrin 1 receptor 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3678-3p Platinum 23939 resistant tissue
hsa-miR-3678-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3678-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-3678-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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