miRTarBase - #MIRT347687


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pre-miRNA Information
pre-miRNA hsa-mir-4318   
Genomic Coordinates chr18: 37657135 - 37657215
Description Homo sapiens miR-4318 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4318
Sequence 55| CACUGUGGGUACAUGCU |71
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs753426994 4 dbSNP
rs1218438067 17 dbSNP
Putative Targets

Gene Information
Gene Symbol LSM14A   
Synonyms C19orf13, FAM61A, RAP55, RAP55A
Description LSM14A, mRNA processing body assembly factor
Transcript NM_001114093   
Other Transcripts NM_015578   
Expression
Putative miRNA Targets on LSM14A
3'UTR of LSM14A
(miRNA target sites are highlighted)		 
>LSM14A|NM_001114093|3'UTR
   1 AAGGTCTGGATTGATCGTACTGCTTTCTGAAAGAAAGACAACAAAGTTGCTGCATAGTCTACAAACAAGTCTCTGAAAAT
  81 AGGTGAATTTCTAGCTCTTCATGGTCCTGAACATTGATTTCAGTCTTTGCAAAGAATGAAGAAGTGAATTCGCTGTACAT
 161 TTGTCACCAGCACTGGGTTTTTGTTTTTTGTTTGTTTTTCCGCTTAATTTCAAAGATAAAATGCAGTTACTTTTGGGGGT
 241 GGAAGGCTCATCTTAAAACATGAGCATTAAATATATTTGGAATAGCAGAAGGTTAAGTAATTTCTTATGTATAGTTAAAC
 321 TAAAGCAGTACTTCAGTGGGACTTAACAAGTATTTTTTCATCACTGAAAGGTTTTTTTTTTTTATCACTAAATTGTATTT
 401 GGCAATTGCAAGTTGCCTGCAGATAGGGCCGTGATACTGTGTTTTGAGCCACAGAAGGTTGTGTGTGTGTGTGTGTGTGT
 481 GTGTGTGTGTGTGTGTGTATGTGTGTGTCTTTTTCCTCCTTTCTTTTGGGGAATCCTGTAATATGAGGTAGCTTATTTCG
 561 TCAATTAATTAGGGTGCTGGATGGTAGAGAATTTTGTCAGTCAACTATGTACACACAGTAAATACTGTTTCTTAGGCAAA
 641 GGTAACTTTTTTATATAGTTGTAAAATTCCATTATATTCCATTGCCAAAGAAACATTAAGAACTTTGTATAGCTGTATAA
 721 AAAGCAACTAATTTTTTAAAGAATAAACATTTTAAAGTCAGCAAACATACTGTGTCCTTGCAGAAGTTGATGTGCTGAGC
 801 AGCAGCCTTATGGGTGGGTCTTTTTTTCTTAGTTTTCCAGGCTTAACATTTTTGATTTTGTTTTTTAATGTTTGGAACAT
 881 AAATGAAGATTTGATACATTATTTCATTATCTAAAAAGGATTAATTATTCATGCTCATTGTAAGAACTTCATTTTGTAGC
 961 AAATGGCATATCACAGGATCTGTCCAGATAATCGATATTTTCAGTATACAAATGTAAATAATCACAGATGAGAATGTACT
1041 TAGCTGTATTTTCAAATAAGTAATCTTCCCCCCTTTTGTAGGACTTTAAAACTAGGCATCAATGAACCTGTTTTTCCTAT
1121 TATGCCTGGAATTTAGTCATGATACCTTGACTCATTCCATCATATTTCAAGAGGATTCAGAGTGCTAGAAATTATTTTGG
1201 TAGCCTGTAACACACGGCAACACTGGTCCTTGGGCCTATGATGACCCACAGATGACTCAGTATAGAGTTCATTGCTAATT
1281 ATAAATTACTAGTGAATCTTTTTGATATTTTAAGCTCTAGTGGGAAAAATCTGGCCACTTTTGTGTTTTTATGAAGGCCA
1361 TGGAATAAAAGGATCCAAAGATTTAAATATTTTTATCTAATATTTTGATTGTTTTCTTAACTTTCTCCTTAAAACATTCA
1441 GTAGTGATAAAGATATAGAAACTGCACTGTAGGAGAATTGGAATATTTAAGGCTGGTTGACATTTTTTATTTTCATTTTA
1521 TATCTTTTGTATAGCTCTACAAGGCAGTGTTTTGTAATTTGGTTTCATTATGAAGATCCAGTACTTGGCAGCCATAGTTT
1601 AGACAATATTGTTCAGTGCTGTTTGCTTGCATGTTAACAACAAAACCTTTTAGAGGACCCACAAATCATGATATTGAACA
1681 CAGTTCCGAGGCATTCAGAGCATCAGAGCAAGTACCATGGCAATACATGTGTAGACTGTTGGAGATGTCCCGGGCCAATT
1761 TCAAGAAAGAAAACTGTAAATACTAGTTCTACTTGCTCTGAAATTATGAGTTTATGCGTTTTCCCAGCCCTCCGAATCAC
1841 TGACTGGGGCGTTTTGTGCCCCAGCAATAACTGGCAGCATGGCATACCTGCAGTACCCCTTACAATATTAAAGCAAAGTT
1921 TTTATTCTAAAACAGAATAAAACTGTTCAATAAAAAATGCTCGTCAAAGTTCTTTCTCTTTAAATAGTAACATTCTGTTT
2001 CAGTAGGAACATAATGAAAGGAATCTTTTAAATGGAAGAGCGGAATTATAATGTTTGTATTCCCTGTAATAACTATAAAT
2081 CAGTTACTTTATTTCTAAGATTGAGTTATTGTTGCAGATGTTTAGGGAAAGCTAAAAGCCCCTTCCTTCCCCTCCTGTGT
2161 GTAAATAAAATACTTCTGAGATCA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucGUACAUGGGUGUCAc 5'
            :|||||| |||||| 
Target 5' acTATGTACACACAGTa 3'
 604 - 620 139.00 -14.40
2 
miRNA  3' ucgUACAUGGGUGUCac 5'
             ||| ||||||||  
Target 5' atgATG-ACCCACAGat 3'
 1238 - 1253 137.00 -14.80
3 
miRNA  3' ucGUAC---AUGGGUGUCAc 5'
            ||||   ||||::|||| 
Target 5' agCATGGCATACCTGCAGTa 3'
 1876 - 1895 131.00 -15.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28838419 44 COSMIC
COSN28866483 44 COSMIC
COSN30571079 153 COSMIC
COSN8605607 154 COSMIC
COSN29336198 158 COSMIC
COSN30582238 166 COSMIC
COSN16741449 586 COSMIC
COSN28718901 690 COSMIC
COSN24306763 889 COSMIC
COSN30660541 925 COSMIC
COSM6704678 947 COSMIC
COSN26983197 983 COSMIC
COSN30453713 1001 COSMIC
COSN30188455 1004 COSMIC
COSN20079289 1019 COSMIC
COSN30525466 1026 COSMIC
COSN31511574 1035 COSMIC
COSN30184947 1039 COSMIC
COSN31587753 1052 COSMIC
COSN31572988 1102 COSMIC
COSN16793353 1103 COSMIC
COSN31588503 1202 COSMIC
COSN31569553 1203 COSMIC
COSN31558459 1205 COSMIC
COSN17037843 1230 COSMIC
COSN21228250 1244 COSMIC
COSN19661767 1284 COSMIC
COSN1766884 1304 COSMIC
COSN31483159 1334 COSMIC
COSN14669490 1398 COSMIC
COSN20115739 1399 COSMIC
COSN27330130 1399 COSMIC
COSN16168918 1400 COSMIC
COSN6143086 1511 COSMIC
COSN31547336 1644 COSMIC
COSN31489627 1655 COSMIC
COSN28793565 1723 COSMIC
COSN31516673 1791 COSMIC
COSN25705511 1832 COSMIC
COSN31535967 1867 COSMIC
COSN31516983 1912 COSMIC
COSN6143087 1970 COSMIC
COSN20115740 2045 COSMIC
COSN1214494 2046 COSMIC
COSN1214495 2048 COSMIC
COSN20115741 2143 COSMIC
COSN31585176 2190 COSMIC
COSN30164620 2218 COSMIC
COSN7125023 2276 COSMIC
COSN31585180 2284 COSMIC
COSN29072729 2308 COSMIC
COSN31585806 2326 COSMIC
COSN31527463 2417 COSMIC
COSN25915981 2635 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1011078122 4 dbSNP
rs1396149451 8 dbSNP
rs1309900819 9 dbSNP
rs1401758557 10 dbSNP
rs1264103635 15 dbSNP
rs1489664055 17 dbSNP
rs754102967 18 dbSNP
rs868378595 19 dbSNP
rs755347788 25 dbSNP
rs1447154625 31 dbSNP
rs754110489 36 dbSNP
rs780222088 36 dbSNP
rs765558032 42 dbSNP
rs1375221973 44 dbSNP
rs752388905 45 dbSNP
rs1419567871 49 dbSNP
rs1404742064 50 dbSNP
rs1159411288 51 dbSNP
rs1029205166 53 dbSNP
rs1162578004 54 dbSNP
rs1351468333 56 dbSNP
rs1458159221 59 dbSNP
rs1326841542 60 dbSNP
rs1388124092 62 dbSNP
rs1433032734 66 dbSNP
rs758179579 68 dbSNP
rs1362729745 69 dbSNP
rs750949038 72 dbSNP
rs1228311693 74 dbSNP
rs1311203368 80 dbSNP
rs1323884761 82 dbSNP
rs754493520 83 dbSNP
rs953545664 86 dbSNP
rs868244902 87 dbSNP
rs925946206 106 dbSNP
rs987693075 110 dbSNP
rs111365500 112 dbSNP
rs937606349 122 dbSNP
rs538560263 126 dbSNP
rs1259836703 130 dbSNP
rs962176310 130 dbSNP
rs1356852244 131 dbSNP
rs972576421 133 dbSNP
rs1413483969 134 dbSNP
rs879533758 142 dbSNP
rs1355444578 146 dbSNP
rs1299181806 152 dbSNP
rs920566980 153 dbSNP
rs1383042613 155 dbSNP
rs878916583 156 dbSNP
rs1158233736 169 dbSNP
rs1391681335 173 dbSNP
rs554652945 176 dbSNP
rs1162950146 181 dbSNP
rs930639465 184 dbSNP
rs1263868267 194 dbSNP
rs1380371884 197 dbSNP
rs1048338631 204 dbSNP
rs1195038221 225 dbSNP
rs916534491 226 dbSNP
rs1323456740 230 dbSNP
rs917413045 231 dbSNP
rs1046251419 236 dbSNP
rs1336217550 237 dbSNP
rs1270711454 244 dbSNP
rs1249695809 246 dbSNP
rs79246173 257 dbSNP
rs1334730276 268 dbSNP
rs1036529326 272 dbSNP
rs193088622 283 dbSNP
rs893436005 299 dbSNP
rs146647802 300 dbSNP
rs1029195274 302 dbSNP
rs953661632 303 dbSNP
rs576008748 306 dbSNP
rs529213959 309 dbSNP
rs540688830 310 dbSNP
rs761596102 311 dbSNP
rs1461034498 313 dbSNP
rs542964753 322 dbSNP
rs1169614087 326 dbSNP
rs888081653 330 dbSNP
rs962536350 333 dbSNP
rs1372298443 336 dbSNP
rs576964024 338 dbSNP
rs670286 339 dbSNP
rs965265366 343 dbSNP
rs1332999942 345 dbSNP
rs952016688 347 dbSNP
rs1274275188 354 dbSNP
rs991515946 354 dbSNP
rs916482619 365 dbSNP
rs1269975418 369 dbSNP
rs1403483653 375 dbSNP
rs1235529948 377 dbSNP
rs998000138 384 dbSNP
rs781157811 385 dbSNP
rs1355194696 387 dbSNP
rs1330748140 389 dbSNP
rs555966996 392 dbSNP
rs141426907 408 dbSNP
rs745773593 415 dbSNP
rs1174000943 419 dbSNP
rs1455462200 428 dbSNP
rs1392827614 430 dbSNP
rs1192652264 435 dbSNP
rs978844455 438 dbSNP
rs1052189772 440 dbSNP
rs1380989137 442 dbSNP
rs11673180 452 dbSNP
rs1201909869 458 dbSNP
rs946375303 464 dbSNP
rs1050077675 466 dbSNP
rs561495553 470 dbSNP
rs1301433359 471 dbSNP
rs1233858383 473 dbSNP
rs1374412087 474 dbSNP
rs1281350254 480 dbSNP
rs527281429 497 dbSNP
rs1353838496 506 dbSNP
rs1313434686 507 dbSNP
rs1436313088 512 dbSNP
rs749484453 514 dbSNP
rs541084102 515 dbSNP
rs1019623935 516 dbSNP
rs917547303 523 dbSNP
rs774708424 539 dbSNP
rs564164274 564 dbSNP
rs972239019 568 dbSNP
rs502810 578 dbSNP
rs1278609646 583 dbSNP
rs866493528 596 dbSNP
rs76310788 603 dbSNP
rs1261602962 604 dbSNP
rs1210706476 610 dbSNP
rs1317716364 616 dbSNP
rs772538569 617 dbSNP
rs1027726904 620 dbSNP
rs1222098525 621 dbSNP
rs1478412114 623 dbSNP
rs1293762009 632 dbSNP
rs1416557246 635 dbSNP
rs559536659 642 dbSNP
rs1048110414 658 dbSNP
rs1312013110 660 dbSNP
rs1426504066 665 dbSNP
rs1346547377 683 dbSNP
rs1468979108 696 dbSNP
rs1156531162 697 dbSNP
rs552784907 698 dbSNP
rs1022942021 703 dbSNP
rs1476473283 713 dbSNP
rs1360746676 721 dbSNP
rs1256076847 730 dbSNP
rs569471466 737 dbSNP
rs1486412060 738 dbSNP
rs1288262123 739 dbSNP
rs1213917982 745 dbSNP
rs1316355564 746 dbSNP
rs1362616701 748 dbSNP
rs531879191 749 dbSNP
rs1235259328 751 dbSNP
rs1332560072 755 dbSNP
rs761201892 756 dbSNP
rs1280191816 761 dbSNP
rs143370812 767 dbSNP
rs529052053 776 dbSNP
rs1343706094 784 dbSNP
rs982009972 787 dbSNP
rs568317607 788 dbSNP
rs184989652 789 dbSNP
rs901128575 801 dbSNP
rs189162931 816 dbSNP
rs1416270389 822 dbSNP
rs998026499 830 dbSNP
rs1164734453 842 dbSNP
rs694804 844 dbSNP
rs1429419732 847 dbSNP
rs1422114426 848 dbSNP
rs1464610207 853 dbSNP
rs1215583867 858 dbSNP
rs1253922313 858 dbSNP
rs1272398081 863 dbSNP
rs1467220339 863 dbSNP
rs746552447 887 dbSNP
rs757095314 892 dbSNP
rs570588734 897 dbSNP
rs745837070 903 dbSNP
rs769627806 904 dbSNP
rs1180046410 906 dbSNP
rs527746776 909 dbSNP
rs779881803 911 dbSNP
rs1475424349 913 dbSNP
rs1158095691 914 dbSNP
rs181820603 916 dbSNP
rs1386147552 922 dbSNP
rs556049561 943 dbSNP
rs1320524542 945 dbSNP
rs867093101 947 dbSNP
rs773235320 950 dbSNP
rs1213821459 951 dbSNP
rs760764179 952 dbSNP
rs1305209740 953 dbSNP
rs770965097 954 dbSNP
rs1438031252 961 dbSNP
rs1381920013 964 dbSNP
rs777163691 965 dbSNP
rs1000695171 968 dbSNP
rs576204797 969 dbSNP
rs1393102644 972 dbSNP
rs376244868 978 dbSNP
rs1033130499 980 dbSNP
rs371369320 981 dbSNP
rs201016490 982 dbSNP
rs1395875602 986 dbSNP
rs763797471 990 dbSNP
rs1239169905 997 dbSNP
rs1485982474 1000 dbSNP
rs377744792 1000 dbSNP
rs370991481 1002 dbSNP
rs1363761350 1003 dbSNP
rs898099345 1010 dbSNP
rs555640575 1013 dbSNP
rs1481555394 1038 dbSNP
rs572293434 1052 dbSNP
rs972271626 1053 dbSNP
rs1158115049 1054 dbSNP
rs185050606 1058 dbSNP
rs1231643677 1060 dbSNP
rs1369865814 1075 dbSNP
rs1307080070 1078 dbSNP
rs1421504323 1082 dbSNP
rs564100997 1085 dbSNP
rs1296990989 1087 dbSNP
rs1363835822 1088 dbSNP
rs878962503 1090 dbSNP
rs1429436695 1091 dbSNP
rs34924932 1095 dbSNP
rs751191584 1102 dbSNP
rs1275461850 1103 dbSNP
rs1370041861 1122 dbSNP
rs577798488 1126 dbSNP
rs930834236 1136 dbSNP
rs1377319569 1137 dbSNP
rs971418363 1140 dbSNP
rs1420984047 1143 dbSNP
rs1248280605 1146 dbSNP
rs1181375858 1148 dbSNP
rs985363111 1151 dbSNP
rs1003321407 1152 dbSNP
rs757085140 1167 dbSNP
rs1282184208 1172 dbSNP
rs1034933044 1180 dbSNP
rs956863137 1189 dbSNP
rs988039210 1209 dbSNP
rs915047252 1210 dbSNP
rs780926735 1213 dbSNP
rs1286937314 1220 dbSNP
rs1409733743 1222 dbSNP
rs1219516613 1223 dbSNP
rs1315136800 1226 dbSNP
rs1413371829 1231 dbSNP
rs148354109 1232 dbSNP
rs942432714 1237 dbSNP
rs1455354216 1242 dbSNP
rs375968934 1245 dbSNP
rs1158598625 1246 dbSNP
rs1039382398 1251 dbSNP
rs1259580425 1253 dbSNP
rs900821284 1261 dbSNP
rs933910778 1269 dbSNP
rs1040466304 1272 dbSNP
rs918947402 1272 dbSNP
rs750351395 1279 dbSNP
rs1348169887 1284 dbSNP
rs188212454 1284 dbSNP
rs1247883609 1285 dbSNP
rs1468296544 1286 dbSNP
rs1176256170 1287 dbSNP
rs1380757386 1288 dbSNP
rs1233407284 1289 dbSNP
rs1441283750 1289 dbSNP
rs1295675484 1293 dbSNP
rs903099593 1295 dbSNP
rs756019604 1306 dbSNP
rs1033241504 1309 dbSNP
rs887904190 1312 dbSNP
rs181082480 1316 dbSNP
rs1383163279 1321 dbSNP
rs1319937179 1323 dbSNP
rs1462078593 1324 dbSNP
rs1419889684 1325 dbSNP
rs1162708565 1328 dbSNP
rs1364910235 1329 dbSNP
rs531937558 1331 dbSNP
rs894587501 1332 dbSNP
rs1247079227 1334 dbSNP
rs781359087 1340 dbSNP
rs1024314155 1354 dbSNP
rs1275528538 1356 dbSNP
rs971355217 1357 dbSNP
rs1230129118 1358 dbSNP
rs1297172800 1359 dbSNP
rs1396802672 1359 dbSNP
rs1009406547 1360 dbSNP
rs1174095273 1360 dbSNP
rs1190101343 1360 dbSNP
rs1233927049 1360 dbSNP
rs1273117911 1360 dbSNP
rs1330845922 1360 dbSNP
rs1336222697 1360 dbSNP
rs1369736373 1360 dbSNP
rs1422671490 1360 dbSNP
rs1427512089 1360 dbSNP
rs1435906522 1360 dbSNP
rs1436198744 1360 dbSNP
rs369374116 1360 dbSNP
rs71165635 1360 dbSNP
rs759450812 1360 dbSNP
rs769806796 1360 dbSNP
rs972052323 1360 dbSNP
rs1022171993 1361 dbSNP
rs1184616594 1361 dbSNP
rs1026608307 1362 dbSNP
rs1351631136 1363 dbSNP
rs1440363891 1364 dbSNP
rs967853581 1364 dbSNP
rs1350291795 1366 dbSNP
rs1276795469 1368 dbSNP
rs1218677556 1372 dbSNP
rs1351496284 1374 dbSNP
rs548559805 1376 dbSNP
rs985955306 1378 dbSNP
rs1378159300 1380 dbSNP
rs910283422 1382 dbSNP
rs1313229898 1384 dbSNP
rs966161652 1386 dbSNP
rs1174954741 1388 dbSNP
rs1357024725 1388 dbSNP
rs1359362417 1388 dbSNP
rs1229338462 1390 dbSNP
rs1400724644 1390 dbSNP
rs1156405286 1392 dbSNP
rs1438954605 1392 dbSNP
rs1471878529 1392 dbSNP
rs1189029868 1394 dbSNP
rs755853924 1394 dbSNP
rs1235876992 1395 dbSNP
rs1209703608 1396 dbSNP
rs61483260 1396 dbSNP
rs766234264 1396 dbSNP
rs867413345 1396 dbSNP
rs985007747 1396 dbSNP
rs1260632 1398 dbSNP
rs1491413946 1398 dbSNP
rs867656959 1398 dbSNP
rs74404860 1400 dbSNP
rs1203430258 1402 dbSNP
rs1238385582 1404 dbSNP
rs1458782037 1410 dbSNP
rs1234863968 1413 dbSNP
rs1181557964 1414 dbSNP
rs1376708874 1419 dbSNP
rs749435541 1419 dbSNP
rs1384307289 1429 dbSNP
rs1473092809 1434 dbSNP
rs879610291 1437 dbSNP
rs1164913451 1438 dbSNP
rs918881276 1439 dbSNP
rs1408244253 1445 dbSNP
rs1317931145 1446 dbSNP
rs1456267166 1449 dbSNP
rs963844286 1459 dbSNP
rs562403237 1460 dbSNP
rs528006021 1461 dbSNP
rs1049337404 1463 dbSNP
rs922278345 1464 dbSNP
rs933691330 1465 dbSNP
rs1041361544 1466 dbSNP
rs1250192155 1475 dbSNP
rs1464527699 1480 dbSNP
rs1273663949 1485 dbSNP
rs1215467830 1503 dbSNP
rs1319922758 1508 dbSNP
rs542847751 1513 dbSNP
rs532950754 1515 dbSNP
rs907388773 1519 dbSNP
rs1003342651 1523 dbSNP
rs11548915 1528 dbSNP
rs1294982013 1532 dbSNP
rs547370765 1538 dbSNP
rs935903689 1554 dbSNP
rs1394593725 1557 dbSNP
rs1327402415 1569 dbSNP
rs1449494030 1569 dbSNP
rs1199585326 1572 dbSNP
rs1459896554 1578 dbSNP
rs1054314214 1582 dbSNP
rs1286439533 1604 dbSNP
rs1044041 1608 dbSNP
rs1213503830 1630 dbSNP
rs186503887 1633 dbSNP
rs1392214530 1643 dbSNP
rs551677447 1659 dbSNP
rs1319561159 1662 dbSNP
rs1448881303 1671 dbSNP
rs1201323715 1682 dbSNP
rs894262039 1683 dbSNP
rs1193030362 1688 dbSNP
rs1487452078 1690 dbSNP
rs778002883 1694 dbSNP
rs1013012309 1698 dbSNP
rs1045884589 1700 dbSNP
rs907285833 1701 dbSNP
rs1204903356 1706 dbSNP
rs35936804 1712 dbSNP
rs891759450 1721 dbSNP
rs583121 1723 dbSNP
rs1227191632 1740 dbSNP
rs117293194 1741 dbSNP
rs1304955913 1743 dbSNP
rs1022160763 1746 dbSNP
rs1026307870 1748 dbSNP
rs1366052216 1750 dbSNP
rs377558037 1755 dbSNP
rs745494482 1761 dbSNP
rs1170095070 1767 dbSNP
rs965913695 1771 dbSNP
rs1424359105 1776 dbSNP
rs976195277 1782 dbSNP
rs1395971814 1789 dbSNP
rs1467436623 1790 dbSNP
rs1174544692 1796 dbSNP
rs1178264054 1799 dbSNP
rs1431538363 1799 dbSNP
rs1017772400 1810 dbSNP
rs1266500780 1814 dbSNP
rs1177722225 1837 dbSNP
rs550250174 1841 dbSNP
rs569709129 1842 dbSNP
rs535626474 1866 dbSNP
rs1348132906 1871 dbSNP
rs1325233326 1879 dbSNP
rs1257420924 1881 dbSNP
rs1399863499 1883 dbSNP
rs1311109456 1886 dbSNP
rs769356409 1894 dbSNP
rs955106262 1895 dbSNP
rs1352905859 1904 dbSNP
rs1306533363 1905 dbSNP
rs57512913 1912 dbSNP
rs1221377019 1913 dbSNP
rs200210578 1914 dbSNP
rs534952797 1915 dbSNP
rs557754734 1927 dbSNP
rs1377122879 1930 dbSNP
rs1160005580 1936 dbSNP
rs577737442 1940 dbSNP
rs1446358195 1952 dbSNP
rs1054746489 1956 dbSNP
rs566965148 1957 dbSNP
rs1264083035 1961 dbSNP
rs938866113 1962 dbSNP
rs915823069 1964 dbSNP
rs1181133621 1967 dbSNP
rs1257754870 1968 dbSNP
rs1485896725 1968 dbSNP
rs948575026 1969 dbSNP
rs1260768967 1971 dbSNP
rs569805326 1971 dbSNP
rs1053611656 1973 dbSNP
rs543497143 1979 dbSNP
rs1287036941 1984 dbSNP
rs1045573433 1990 dbSNP
rs1228092063 1992 dbSNP
rs907317009 1998 dbSNP
rs537453667 2002 dbSNP
rs947370826 2003 dbSNP
rs1043014909 2020 dbSNP
rs189418048 2029 dbSNP
rs74177123 2037 dbSNP
rs78363788 2037 dbSNP
rs72080999 2038 dbSNP
rs1386317998 2039 dbSNP
rs748020470 2046 dbSNP
rs1485577113 2048 dbSNP
rs1007855128 2052 dbSNP
rs1017521405 2055 dbSNP
rs1185232452 2056 dbSNP
rs887733630 2059 dbSNP
rs901668105 2063 dbSNP
rs1006479491 2064 dbSNP
rs1210012200 2069 dbSNP
rs1463164274 2071 dbSNP
rs79504017 2073 dbSNP
rs1208632421 2077 dbSNP
rs1357754302 2079 dbSNP
rs1286287783 2083 dbSNP
rs773659631 2084 dbSNP
rs761094147 2089 dbSNP
rs1402526179 2101 dbSNP
rs566440081 2107 dbSNP
rs1298654076 2115 dbSNP
rs964986457 2116 dbSNP
rs140534397 2117 dbSNP
rs1277617428 2124 dbSNP
rs980723375 2125 dbSNP
rs562177646 2127 dbSNP
rs1217302161 2137 dbSNP
rs16427 2138 dbSNP
rs377341187 2138 dbSNP
rs796930609 2138 dbSNP
rs1489825901 2139 dbSNP
rs1161190604 2141 dbSNP
rs868746268 2141 dbSNP
rs955138781 2142 dbSNP
rs200994564 2143 dbSNP
rs1208167213 2149 dbSNP
rs562720333 2152 dbSNP
rs1447341852 2153 dbSNP
rs1246876259 2163 dbSNP
rs547704221 2183 dbSNP
rs1031344275 2188 dbSNP
rs1452673798 2190 dbSNP
rs1043130142 2191 dbSNP
rs1452421564 2202 dbSNP
rs911181895 2209 dbSNP
rs1356101955 2211 dbSNP
rs957297825 2221 dbSNP
rs1044053 2226 dbSNP
rs1275548737 2232 dbSNP
rs989830800 2238 dbSNP
rs1230869414 2239 dbSNP
rs1340386671 2241 dbSNP
rs1296929858 2243 dbSNP
rs1201264104 2246 dbSNP
rs1437308340 2248 dbSNP
rs1332715351 2252 dbSNP
rs762577021 2259 dbSNP
rs1362489546 2261 dbSNP
rs1385954991 2262 dbSNP
rs866915119 2263 dbSNP
rs181371611 2271 dbSNP
rs1439435859 2273 dbSNP
rs1170324615 2277 dbSNP
rs1427385764 2287 dbSNP
rs185744368 2294 dbSNP
rs1173665645 2307 dbSNP
rs1478744612 2309 dbSNP
rs1248898288 2320 dbSNP
rs1039353674 2322 dbSNP
rs549946139 2331 dbSNP
rs531527096 2335 dbSNP
rs570134386 2340 dbSNP
rs997738831 2342 dbSNP
rs1340276934 2343 dbSNP
rs1274228047 2353 dbSNP
rs928431904 2357 dbSNP
rs1347234327 2360 dbSNP
rs929376420 2365 dbSNP
rs1048239318 2367 dbSNP
rs1351073125 2374 dbSNP
rs1309596416 2379 dbSNP
rs1001184384 2386 dbSNP
rs1369515352 2389 dbSNP
rs1390747210 2395 dbSNP
rs1388222811 2397 dbSNP
rs1005942942 2402 dbSNP
rs763564797 2404 dbSNP
rs751244497 2410 dbSNP
rs942064110 2421 dbSNP
rs1413411777 2425 dbSNP
rs529399905 2425 dbSNP
rs1039015181 2436 dbSNP
rs1036341065 2438 dbSNP
rs190553073 2448 dbSNP
rs1251277479 2449 dbSNP
rs183176239 2455 dbSNP
rs989479943 2456 dbSNP
rs913367828 2461 dbSNP
rs1264997790 2462 dbSNP
rs1276552183 2465 dbSNP
rs1199990469 2471 dbSNP
rs1030474881 2472 dbSNP
rs1329719823 2489 dbSNP
rs1290173708 2492 dbSNP
rs534889462 2505 dbSNP
rs1226276247 2507 dbSNP
rs1349667020 2508 dbSNP
rs1284626981 2512 dbSNP
rs1488845358 2516 dbSNP
rs902655976 2526 dbSNP
rs1449772774 2532 dbSNP
rs1332907704 2542 dbSNP
rs1357111538 2542 dbSNP
rs1211898802 2548 dbSNP
rs1389932244 2548 dbSNP
rs1162014592 2556 dbSNP
rs558088603 2575 dbSNP
rs571223159 2582 dbSNP
rs1182844420 2587 dbSNP
rs978810887 2589 dbSNP
rs1235966594 2602 dbSNP
rs1209461392 2613 dbSNP
rs535150008 2615 dbSNP
rs1031878763 2618 dbSNP
rs1206729250 2619 dbSNP
rs911339066 2622 dbSNP
rs1290294915 2624 dbSNP
rs1229872821 2625 dbSNP
rs537041546 2627 dbSNP
rs761407444 2628 dbSNP
rs1435114779 2637 dbSNP
rs1366721465 2642 dbSNP
rs1443338359 2644 dbSNP
rs942680185 2651 dbSNP
rs1345168634 2652 dbSNP
rs556710365 2653 dbSNP
rs573664097 2654 dbSNP
rs1022602708 2657 dbSNP
rs1368584965 2659 dbSNP
rs969983644 2666 dbSNP
rs1458976899 2668 dbSNP
rs922613393 2669 dbSNP
rs1183238985 2671 dbSNP
rs1450388757 2673 dbSNP
rs1249977110 2675 dbSNP
rs1186804633 2676 dbSNP
rs1485492337 2684 dbSNP
rs981318845 2687 dbSNP
rs1399133994 2690 dbSNP
rs542372212 2692 dbSNP
rs1047687844 2694 dbSNP
rs1288947363 2697 dbSNP
rs886233690 2707 dbSNP
rs1343908251 2708 dbSNP
rs1294736588 2709 dbSNP
rs553487663 2718 dbSNP
rs774263459 2719 dbSNP
rs1395449879 2725 dbSNP
rs572306587 2731 dbSNP
rs541284100 2734 dbSNP
rs905642644 2735 dbSNP
rs983299621 2738 dbSNP
rs1348487484 2743 dbSNP
rs150330390 2748 dbSNP
rs1163421071 2750 dbSNP
rs1001590790 2751 dbSNP
rs909311321 2752 dbSNP
rs1166745824 2753 dbSNP
rs1428031365 2755 dbSNP
rs1192832841 2756 dbSNP
rs1322454064 2757 dbSNP
rs1205668209 2759 dbSNP
rs28733792 2759 dbSNP
rs1483803606 2761 dbSNP
rs1272078691 2762 dbSNP
rs1226936508 2778 dbSNP
rs1312282312 2779 dbSNP
rs942112988 2780 dbSNP
rs959980070 2783 dbSNP
rs1010402679 2787 dbSNP
rs1039459032 2793 dbSNP
rs750164718 2797 dbSNP
rs533489951 2800 dbSNP
rs7248629 2804 dbSNP
rs1199438387 2827 dbSNP
rs1461723055 2828 dbSNP
rs1378270882 2831 dbSNP
rs1260454416 2843 dbSNP
rs755856165 2844 dbSNP
rs1052000967 2845 dbSNP
rs1431346084 2845 dbSNP
rs902770803 2854 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 26065.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucGUACAUGGGUGUCAc 5'
            :|||||| |||||| 
Target 5' acUAUGUACACACAGUa 3'
 		15 - 31
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000433627.5 | 3UTR | AAUUUUGUCAGUCAACUAUGUACACACAGUAAAUACUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
60 hsa-miR-4318 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT068761 RB1 RB transcriptional corepressor 1 2 2
MIRT094193 THAP6 THAP domain containing 6 2 2
MIRT166771 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 2
MIRT185495 SRP9 signal recognition particle 9 2 2
MIRT347687 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT441948 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT443293 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT447126 DUSP16 dual specificity phosphatase 16 2 2
MIRT447428 MED21 mediator complex subunit 21 2 2
MIRT447971 MSH6 mutS homolog 6 2 2
MIRT450693 RPN2 ribophorin II 2 2
MIRT465671 TNPO2 transportin 2 2 2
MIRT477011 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT479898 CCDC117 coiled-coil domain containing 117 2 2
MIRT488681 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT490349 PEX10 peroxisomal biogenesis factor 10 2 2
MIRT491108 NARS asparaginyl-tRNA synthetase 2 2
MIRT494804 ALG9 ALG9, alpha-1,2-mannosyltransferase 2 2
MIRT512730 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT518098 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 4
MIRT518113 RPS7 ribosomal protein S7 2 2
MIRT528967 FAM19A3 family with sequence similarity 19 member A3, C-C motif chemokine like 2 2
MIRT529796 AP4S1 adaptor related protein complex 4 sigma 1 subunit 2 2
MIRT530503 FADS6 fatty acid desaturase 6 2 2
MIRT530797 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT532654 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 2 2
MIRT533417 TXLNG taxilin gamma 2 2
MIRT536327 LGSN lengsin, lens protein with glutamine synthetase domain 2 2
MIRT537611 ERMP1 endoplasmic reticulum metallopeptidase 1 2 2
MIRT540738 FN3KRP fructosamine 3 kinase related protein 2 2
MIRT545780 ZNF805 zinc finger protein 805 2 2
MIRT549884 GINS4 GINS complex subunit 4 2 2
MIRT550618 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT551451 SULT1B1 sulfotransferase family 1B member 1 2 2
MIRT554858 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT556558 LIMS1 LIM zinc finger domain containing 1 2 2
MIRT572893 ADCY2 adenylate cyclase 2 2 2
MIRT576517 Slc35e2 solute carrier family 35, member E2 2 2
MIRT609005 PYGO1 pygopus family PHD finger 1 2 2
MIRT614782 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT633849 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT634841 APOOL apolipoprotein O like 2 2
MIRT638838 CRTAP cartilage associated protein 2 2
MIRT639980 POU5F1B POU class 5 homeobox 1B 2 2
MIRT640263 ALDOA aldolase, fructose-bisphosphate A 2 2
MIRT641538 SNW1 SNW domain containing 1 2 2
MIRT656540 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT667590 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667732 KIAA1456 KIAA1456 2 2
MIRT667911 ING1 inhibitor of growth family member 1 2 2
MIRT669865 BROX BRO1 domain and CAAX motif containing 2 4
MIRT675877 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT676868 ZNF451 zinc finger protein 451 2 2
MIRT683211 MBNL1 muscleblind like splicing regulator 1 2 2
MIRT704515 COL4A1 collagen type IV alpha 1 chain 2 2
MIRT710184 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 2 2
MIRT712036 TRIP13 thyroid hormone receptor interactor 13 2 2
MIRT716586 BRAP BRCA1 associated protein 2 2
MIRT724189 MMP16 matrix metallopeptidase 16 2 2
MIRT724205 MED7 mediator complex subunit 7 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4318 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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