miRTarBase - #MIRT350503


—
pre-miRNA Information
pre-miRNA hsa-mir-548ac   
Genomic Coordinates chr1: 116560024 - 116560111
Description Homo sapiens miR-548ac stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ac
Sequence 53| CAAAAACCGGCAAUUACUUUUG |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 - 116560056 29233923 MiREDiBase
A-to-I 5 1 - 116560055 29233923 MiREDiBase
A-to-I 6 1 - 116560054 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1182074110 6 dbSNP
rs1392446444 6 dbSNP
rs1326234665 7 dbSNP
rs556579863 8 dbSNP
rs993390910 9 dbSNP
rs901450363 13 dbSNP
rs538553306 22 dbSNP
Putative Targets

Gene Information
Gene Symbol MRGBP   
Synonyms C20orf20, Eaf7, MRG15BP, URCC4
Description MRG domain binding protein
Transcript NM_018270   
Expression
Putative miRNA Targets on MRGBP
3'UTR of MRGBP
(miRNA target sites are highlighted)		 
>MRGBP|NM_018270|3'UTR
   1 ACCCTCAGCCCTGGTGGCGGCAGAGAAGCGGGCGAGGCACTGTGGTCGCTGAGGGGGTTGGCTGGGTCTGAGTGCCACCC
  81 CCCAGGCCACAGTGATACCATCCCAGTGCCATGAGCCCACACTGCCCGCCCTCAGGCTCTCAGGTGAACGTGGCCGTCAG
 161 CGGGGAAACGTGTGTGTCAGTTGGACCATGTGGGACCCTGATGGACCTGAAAGACCAGGATCGGTCCAGCTCAGATATTG
 241 AGGGCTCTGAAGCCTAGTTCTGTCTTCTCTGGAGCAGCTGTGGCTTCCCCGTGGCTGCTTGGTGACATGGATTAGCGCTA
 321 CGTGGGCTGCAGCATTTGGGATCCAGGCTACCTAGAGGGGCATCGGGCCAGGGAAAACCTCGGATTAGCAAGCAATAAAA
 401 ACATGACCTCACTCTTCCTCAAAGGAGCCCCTGGTCTTCCCTGTGTGACTCAGTTCTTTCCATCTGTTTGTCCCGCTGCA
 481 AGCCTCTTTCTGCGCTGACTGTGACATTGGAACGTGGCCTTCCTGTCACCCCCTCCGTGCCACGCACTGAAGGCCACCCC
 561 CACCCACCTGGGAAACTAAGAACTGGATATTTTGCCTCATTCACTTGTACTGTAACAATGTATATAATTTGGTTGGTATT
 641 TCACTATTTAATTTTTAAGAAGCCTATTTTACTAGTGTTTTATATGAACAAAGTACTGCAGAAGTTAAACCTGTGTTGTA
 721 TTTTTTCTGAGATGTTTTGCTTTAAGAGATACTTTTTGCTCAGTTTTTATATGCCAGATACAGAGAATTTGTAGCGGTTA
 801 TTTTTGTATGATCTAGTAACTTGCAAACAGACCAAATGGATGAGAGGCGGGGACCGTGCAGCTGTCGGCTGATGAGGAGG
 881 CGGCCGCCCCAGTGCTGATGGAGATGCCACTTTCGTGTGACTGCGAACATTAAAGCACAAAAAAATCCAACCTGGAGTTG
 961 TGTGATTTTGATACCAAAGTAAGTTCACTTTTCCTCCAAAAGGAAGTTTTTATTTTTCCAAGATTTATAACTAAAGCATA
1041 CACTTAGATGACTTATTAACATTCACTTGATACAACATATAAACAAAATAGTAACAGATTCTGAGTGGTTATTTTGTGGA
1121 CTGTGACAAGCACTTCAAATACAAAATGTTAGGAGGGCAAAACGGTGCGGGCCCTCGTAGGTCAGGCAGGCACCAGTGGG
1201 CTCCTTCCTGCTGAAAGCTGCGGCTGTGAGATGAGACCGCTGGCTGGGTCACAGAGTGAAATCCAGCGTTCCGTGTGCGG
1281 ACGAGGAGACAAGCTGTCCTGGCCAGCCATCGCACCCCAATGTCTTCAGCTTGACGTTGCTTCTCTGCCAGTGGAGCCTC
1361 CTCCACCACCTGGGAACATCCCTGGCCATCTGTCCCTGAAGTCCTCCTCACCATGACGCAGATCACAAGGCACCCACTAA
1441 AGGGGCAAAGCCAGGAATCCCGTGCCATGTGATCGCCCCGTGTGGCACCTGCCACTCGTCTGCACCAAACGCACTGCCAG
1521 TTCTGGGGAAGAACAGCCCAGGGAAGCTGCTGGTCTACGGCCTGCCTGAGCTGTATTCCAAGGGTAGAGCAGCTGCCTGG
1601 GGGGACCCTGTGGGTCCCTTTTCTATAGAGCCGGGACAAATCCACAGCCCTGCAGTAACAGCCTGCCACAAAGAGCAGGC
1681 ATCTGGAGGGCCCCACACACATAGACCAAAGGACTGAGCCCGCCTGGCATTCCTCCACTCACAGCACAAATACTCAGCCC
1761 TGCAGCCAGGGAAGGGTGGGGTCTCCCTTTGCTGCCCAAGTGTGCCCCCTTGCCCGTCTGATCTCTCCTGTTAGGTCAGC
1841 CTCATTCAGGGCTTTGTGCCAGGTCCTGTCCTGGAGTCTCAGTCCGGGACAGCAGCCTGGCTCTTAGGCAGTCCAGAAGC
1921 AGCAGGGCAAAGGGGGGCAAATACTAACACGGGGTGTCACGGGATGGCCAGGAGGAGTCCTGCTCGCCACCCAGGCTCAC
2001 TGTCCTAAACCTCCATCTGAAACCGCATCTCGGGTGACCTCAGATTGTGCTAGGAAAGCCTAGTTAATAAATCTGCCTCA
2081 TCTCGATTACTGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guUUUCAUUAACG--GCCAAAAAc 5'
            |:|| | |||:  ||||| || 
Target 5' acAGAGAATTTGTAGCGGTTATTt 3'
 780 - 803 134.00 -9.40
2 
miRNA  3' guuuucAUUAA--CGGCCAAAAAc 5'
                |||||  |::||| ||| 
Target 5' tgtataTAATTTGGTTGGTATTTc 3'
 619 - 642 130.00 -5.50
3 
miRNA  3' guUUUCAU----UAACG---GCCAAAAAc 5'
            | ||||    ||| :   :|||| || 
Target 5' aaATAGTAACAGATTCTGAGTGGTTATTt 3'
 1086 - 1114 118.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30519533 7 COSMIC
COSN26984993 28 COSMIC
COSN18716837 31 COSMIC
COSN30516889 82 COSMIC
COSN26984994 84 COSMIC
COSN30487331 118 COSMIC
COSN22245763 193 COSMIC
COSN20093794 511 COSMIC
COSN31531420 562 COSMIC
COSN31519262 630 COSMIC
COSN32014764 669 COSMIC
COSN31518622 778 COSMIC
COSN30164279 797 COSMIC
COSN31482680 826 COSMIC
COSN30541063 827 COSMIC
COSN15632596 1204 COSMIC
COSN6688357 1222 COSMIC
COSN28884832 1269 COSMIC
COSN20906120 1674 COSMIC
COSN17052690 1743 COSMIC
COSN9147154 1772 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs375969763 2 dbSNP
rs1299545107 4 dbSNP
rs773565903 5 dbSNP
rs762503821 7 dbSNP
rs115713234 8 dbSNP
rs1399486639 11 dbSNP
rs903860521 12 dbSNP
rs1313142922 13 dbSNP
rs1182142208 14 dbSNP
rs372413684 19 dbSNP
rs200313208 20 dbSNP
rs890941951 21 dbSNP
rs866293168 28 dbSNP
rs1278026550 29 dbSNP
rs1308591695 30 dbSNP
rs752591959 31 dbSNP
rs1254305222 33 dbSNP
rs41279362 34 dbSNP
rs374650982 35 dbSNP
rs1293408072 40 dbSNP
rs753804259 48 dbSNP
rs370543250 49 dbSNP
rs1309681191 56 dbSNP
rs1444338020 58 dbSNP
rs1333862284 60 dbSNP
rs1195111814 64 dbSNP
rs1270800239 70 dbSNP
rs974404204 78 dbSNP
rs1392968791 79 dbSNP
rs894721886 84 dbSNP
rs1443868261 88 dbSNP
rs1424238162 90 dbSNP
rs1381361586 97 dbSNP
rs970165535 105 dbSNP
rs1469072212 116 dbSNP
rs1363669698 117 dbSNP
rs1210625551 123 dbSNP
rs1451742062 124 dbSNP
rs1013203146 128 dbSNP
rs1258480839 129 dbSNP
rs1485490829 131 dbSNP
rs1490074372 137 dbSNP
rs1185869752 141 dbSNP
rs1045106341 146 dbSNP
rs1225205085 147 dbSNP
rs979828526 149 dbSNP
rs1425818488 150 dbSNP
rs906216104 151 dbSNP
rs543112417 156 dbSNP
rs561187774 157 dbSNP
rs1347522099 161 dbSNP
rs956700730 161 dbSNP
rs938426454 162 dbSNP
rs1418066150 163 dbSNP
rs1404601784 167 dbSNP
rs116883192 169 dbSNP
rs772897902 170 dbSNP
rs1374456753 172 dbSNP
rs760594787 173 dbSNP
rs945617658 179 dbSNP
rs1022114938 189 dbSNP
rs539166236 190 dbSNP
rs953279385 194 dbSNP
rs771060065 195 dbSNP
rs1196594566 198 dbSNP
rs1268330770 199 dbSNP
rs1263376101 203 dbSNP
rs932669136 217 dbSNP
rs1445128219 223 dbSNP
rs986030794 224 dbSNP
rs1219555881 234 dbSNP
rs1279402038 242 dbSNP
rs1484586092 244 dbSNP
rs375207438 245 dbSNP
rs1222918630 247 dbSNP
rs1265630047 250 dbSNP
rs966077787 253 dbSNP
rs11554807 257 dbSNP
rs1192653109 258 dbSNP
rs919345209 263 dbSNP
rs930748914 265 dbSNP
rs1404475879 268 dbSNP
rs759165295 270 dbSNP
rs571088405 271 dbSNP
rs532307785 272 dbSNP
rs1419598194 285 dbSNP
rs547367728 291 dbSNP
rs906154520 292 dbSNP
rs1187941992 310 dbSNP
rs142144651 312 dbSNP
rs775167046 315 dbSNP
rs535830667 317 dbSNP
rs554664843 318 dbSNP
rs1381156072 322 dbSNP
rs572514765 323 dbSNP
rs1332735702 330 dbSNP
rs569739887 353 dbSNP
rs888964265 359 dbSNP
rs1361478005 365 dbSNP
rs537118265 366 dbSNP
rs1454857064 375 dbSNP
rs1381035899 381 dbSNP
rs561928718 382 dbSNP
rs1466584267 383 dbSNP
rs1242129529 391 dbSNP
rs1171854783 399 dbSNP
rs1018864729 404 dbSNP
rs1407884725 409 dbSNP
rs966393908 411 dbSNP
rs578208674 415 dbSNP
rs75924758 416 dbSNP
rs952090479 425 dbSNP
rs984890565 426 dbSNP
rs750752811 430 dbSNP
rs1182963344 432 dbSNP
rs1458131473 437 dbSNP
rs1202464187 441 dbSNP
rs948869793 441 dbSNP
rs1307146541 443 dbSNP
rs925555619 445 dbSNP
rs982057862 454 dbSNP
rs1453427654 457 dbSNP
rs554124522 462 dbSNP
rs748971060 475 dbSNP
rs139779958 476 dbSNP
rs1448209262 484 dbSNP
rs1376105758 487 dbSNP
rs1452945901 491 dbSNP
rs1052090563 494 dbSNP
rs1426140088 495 dbSNP
rs530882709 495 dbSNP
rs541432443 495 dbSNP
rs542624192 499 dbSNP
rs1037116552 507 dbSNP
rs7396 509 dbSNP
rs1480383643 512 dbSNP
rs1269673814 514 dbSNP
rs542319924 515 dbSNP
rs1452664853 518 dbSNP
rs995774113 523 dbSNP
rs1156468057 530 dbSNP
rs188689185 533 dbSNP
rs56005449 537 dbSNP
rs1007388852 538 dbSNP
rs1372043961 544 dbSNP
rs150726996 545 dbSNP
rs901745952 547 dbSNP
rs1406421459 557 dbSNP
rs993844704 559 dbSNP
rs1035321365 562 dbSNP
rs7397 563 dbSNP
rs1156900791 564 dbSNP
rs1009989590 566 dbSNP
rs952038118 577 dbSNP
rs1020478841 579 dbSNP
rs1479586952 584 dbSNP
rs374212134 588 dbSNP
rs1268368878 591 dbSNP
rs1205940303 595 dbSNP
rs1334974809 596 dbSNP
rs984834719 597 dbSNP
rs1023053410 603 dbSNP
rs1215755604 605 dbSNP
rs970165318 608 dbSNP
rs981621952 613 dbSNP
rs1224749630 617 dbSNP
rs1343255999 619 dbSNP
rs181179214 620 dbSNP
rs3833338 621 dbSNP
rs1363868033 625 dbSNP
rs1286864223 640 dbSNP
rs1406654538 645 dbSNP
rs1452993432 645 dbSNP
rs139052179 647 dbSNP
rs1273099809 653 dbSNP
rs748345828 664 dbSNP
rs758556357 665 dbSNP
rs1467555709 667 dbSNP
rs1194225477 675 dbSNP
rs1430489572 676 dbSNP
rs529714756 685 dbSNP
rs777620478 689 dbSNP
rs946386608 691 dbSNP
rs149896401 696 dbSNP
rs1265468745 697 dbSNP
rs912558029 699 dbSNP
rs569650227 700 dbSNP
rs1320865330 707 dbSNP
rs910293028 711 dbSNP
rs1251627817 714 dbSNP
rs41279364 715 dbSNP
rs1179154769 716 dbSNP
rs1390579539 719 dbSNP
rs1293193287 721 dbSNP
rs558681281 721 dbSNP
rs1381376986 722 dbSNP
rs1383253433 724 dbSNP
rs901690860 728 dbSNP
rs144952634 747 dbSNP
rs538817958 755 dbSNP
rs1405489246 756 dbSNP
rs1168526880 770 dbSNP
rs554466544 782 dbSNP
rs918637320 783 dbSNP
rs931431688 784 dbSNP
rs1170191408 786 dbSNP
rs770968480 789 dbSNP
rs566963116 796 dbSNP
rs1298714480 797 dbSNP
rs887733413 808 dbSNP
rs1461232717 815 dbSNP
rs776749659 817 dbSNP
rs1023001201 824 dbSNP
rs1342556341 825 dbSNP
rs543283600 835 dbSNP
rs554578505 841 dbSNP
rs1249328456 849 dbSNP
rs1292798203 849 dbSNP
rs148652471 850 dbSNP
rs1243724157 851 dbSNP
rs1009937106 856 dbSNP
rs1019963698 857 dbSNP
rs1480503929 866 dbSNP
rs868607637 867 dbSNP
rs769379404 868 dbSNP
rs1035837374 869 dbSNP
rs1425507070 874 dbSNP
rs999955106 875 dbSNP
rs543558684 879 dbSNP
rs774873366 882 dbSNP
rs989036464 883 dbSNP
rs762597608 886 dbSNP
rs1184595781 887 dbSNP
rs190972715 889 dbSNP
rs564636946 893 dbSNP
rs985659575 894 dbSNP
rs1490399607 903 dbSNP
rs1019852852 906 dbSNP
rs535258186 911 dbSNP
rs1355559321 914 dbSNP
rs973119877 915 dbSNP
rs1241080077 916 dbSNP
rs111671968 918 dbSNP
rs931356739 925 dbSNP
rs979052606 926 dbSNP
rs1424503401 932 dbSNP
rs564995505 936 dbSNP
rs1386117998 939 dbSNP
rs927109351 939 dbSNP
rs1160855224 956 dbSNP
rs144461918 961 dbSNP
rs1361590939 964 dbSNP
rs1180765570 973 dbSNP
rs1304411379 980 dbSNP
rs1377478720 984 dbSNP
rs1270501241 988 dbSNP
rs763716692 989 dbSNP
rs1057061665 997 dbSNP
rs1415572571 998 dbSNP
rs1312530532 999 dbSNP
rs377621095 1007 dbSNP
rs895708492 1020 dbSNP
rs747490951 1034 dbSNP
rs910240331 1037 dbSNP
rs8117374 1038 dbSNP
rs1224132694 1039 dbSNP
rs1296916335 1040 dbSNP
rs1347465439 1043 dbSNP
rs1307467188 1045 dbSNP
rs559477525 1048 dbSNP
rs773609611 1049 dbSNP
rs1258087241 1053 dbSNP
rs761072542 1057 dbSNP
rs1349092881 1062 dbSNP
rs41308098 1065 dbSNP
rs1254982063 1072 dbSNP
rs1488979066 1076 dbSNP
rs6062691 1081 dbSNP
rs563317275 1082 dbSNP
rs1477469958 1085 dbSNP
rs1260923258 1093 dbSNP
rs1242514756 1094 dbSNP
rs1194995598 1096 dbSNP
rs755489732 1098 dbSNP
rs1044396328 1104 dbSNP
rs530468687 1106 dbSNP
rs905873650 1109 dbSNP
rs1325817564 1111 dbSNP
rs1261304441 1119 dbSNP
rs1178170476 1120 dbSNP
rs1002928406 1122 dbSNP
rs1006984117 1124 dbSNP
rs1428981523 1126 dbSNP
rs1364913285 1135 dbSNP
rs1433874127 1138 dbSNP
rs1036188786 1143 dbSNP
rs552313155 1146 dbSNP
rs1407707572 1151 dbSNP
rs1173284370 1152 dbSNP
rs956187095 1158 dbSNP
rs1419707082 1164 dbSNP
rs1373945433 1165 dbSNP
rs1432937345 1166 dbSNP
rs867732335 1168 dbSNP
rs570530453 1169 dbSNP
rs973019037 1169 dbSNP
rs1021776025 1170 dbSNP
rs147845986 1175 dbSNP
rs765296140 1177 dbSNP
rs1209433044 1178 dbSNP
rs1380981414 1182 dbSNP
rs1438610644 1188 dbSNP
rs1275458310 1189 dbSNP
rs375342041 1191 dbSNP
rs964739881 1193 dbSNP
rs1341956976 1194 dbSNP
rs6122299 1197 dbSNP
rs1060961 1204 dbSNP
rs1248834157 1221 dbSNP
rs6011392 1222 dbSNP
rs1300573165 1226 dbSNP
rs958792634 1239 dbSNP
rs777904699 1242 dbSNP
rs929099335 1249 dbSNP
rs1354603621 1254 dbSNP
rs6122300 1267 dbSNP
rs1330536417 1268 dbSNP
rs1427393321 1269 dbSNP
rs1277749524 1271 dbSNP
rs1446381458 1272 dbSNP
rs983265611 1273 dbSNP
rs909065802 1274 dbSNP
rs370509381 1279 dbSNP
rs1294388094 1280 dbSNP
rs941899383 1281 dbSNP
rs554840284 1283 dbSNP
rs1484625583 1284 dbSNP
rs905827037 1296 dbSNP
rs1192783576 1297 dbSNP
rs1253562072 1300 dbSNP
rs945944892 1303 dbSNP
rs938677373 1313 dbSNP
rs1303535416 1315 dbSNP
rs1191555984 1321 dbSNP
rs1426384136 1322 dbSNP
rs1393476142 1324 dbSNP
rs1164057308 1325 dbSNP
rs1402615613 1330 dbSNP
rs1419568206 1332 dbSNP
rs1057164168 1336 dbSNP
rs891860815 1337 dbSNP
rs1010298064 1341 dbSNP
rs1050064077 1352 dbSNP
rs1451732435 1359 dbSNP
rs888841508 1360 dbSNP
rs1487740357 1362 dbSNP
rs1265198333 1364 dbSNP
rs746769284 1376 dbSNP
rs1217176100 1380 dbSNP
rs1395944572 1386 dbSNP
rs757075820 1397 dbSNP
rs1225967488 1401 dbSNP
rs1301763272 1404 dbSNP
rs1283587523 1412 dbSNP
rs904712089 1414 dbSNP
rs1041163774 1418 dbSNP
rs576032443 1419 dbSNP
rs1292689539 1420 dbSNP
rs1223957257 1423 dbSNP
rs901385253 1427 dbSNP
rs41298350 1432 dbSNP
rs1430050644 1437 dbSNP
rs570298171 1440 dbSNP
rs965691752 1442 dbSNP
rs1005524593 1444 dbSNP
rs1034370843 1447 dbSNP
rs1187415607 1457 dbSNP
rs1487138672 1459 dbSNP
rs1246795290 1462 dbSNP
rs976141086 1463 dbSNP
rs1224998851 1468 dbSNP
rs1468015612 1475 dbSNP
rs1030022858 1476 dbSNP
rs950424586 1478 dbSNP
rs1363800628 1480 dbSNP
rs558647228 1481 dbSNP
rs1262882111 1486 dbSNP
rs985209774 1488 dbSNP
rs909013562 1489 dbSNP
rs1177936000 1490 dbSNP
rs1464747092 1493 dbSNP
rs935934372 1496 dbSNP
rs941848431 1498 dbSNP
rs1430720347 1499 dbSNP
rs1388678907 1501 dbSNP
rs1417403606 1504 dbSNP
rs944453073 1511 dbSNP
rs539227693 1512 dbSNP
rs1167244820 1514 dbSNP
rs1481987815 1516 dbSNP
rs1255113814 1519 dbSNP
rs980000983 1520 dbSNP
rs1040139414 1521 dbSNP
rs1344095192 1524 dbSNP
rs901319575 1528 dbSNP
rs927192168 1528 dbSNP
rs938639396 1529 dbSNP
rs1338789809 1532 dbSNP
rs1394430580 1533 dbSNP
rs994375355 1540 dbSNP
rs1057436705 1553 dbSNP
rs762639796 1556 dbSNP
rs946105451 1558 dbSNP
rs41310195 1560 dbSNP
rs1443404577 1563 dbSNP
rs1297238553 1569 dbSNP
rs1387554891 1570 dbSNP
rs1005811928 1576 dbSNP
rs1370777469 1580 dbSNP
rs1254832593 1584 dbSNP
rs1196052048 1586 dbSNP
rs541496829 1594 dbSNP
rs904660821 1596 dbSNP
rs1293313294 1598 dbSNP
rs767775241 1599 dbSNP
rs1333558060 1600 dbSNP
rs559323446 1605 dbSNP
rs1339983467 1607 dbSNP
rs1007010299 1609 dbSNP
rs773881924 1611 dbSNP
rs967879041 1611 dbSNP
rs1307812589 1614 dbSNP
rs1425753226 1615 dbSNP
rs574569516 1618 dbSNP
rs1275039717 1632 dbSNP
rs769620727 1633 dbSNP
rs1018473611 1634 dbSNP
rs901404484 1636 dbSNP
rs572573726 1644 dbSNP
rs986045464 1649 dbSNP
rs542146425 1651 dbSNP
rs535077082 1653 dbSNP
rs1030382485 1654 dbSNP
rs944400483 1655 dbSNP
rs1479810709 1656 dbSNP
rs1291715997 1669 dbSNP
rs1208018200 1674 dbSNP
rs1355492772 1676 dbSNP
rs975791892 1694 dbSNP
rs1230231756 1696 dbSNP
rs1348703298 1698 dbSNP
rs530537704 1701 dbSNP
rs929069198 1701 dbSNP
rs1474924615 1702 dbSNP
rs1321938117 1703 dbSNP
rs983161929 1704 dbSNP
rs1016020444 1706 dbSNP
rs554679481 1715 dbSNP
rs888621776 1719 dbSNP
rs1410849935 1722 dbSNP
rs963156044 1723 dbSNP
rs1170248503 1725 dbSNP
rs941589183 1728 dbSNP
rs1443927324 1729 dbSNP
rs6090117 1734 dbSNP
rs564091082 1736 dbSNP
rs1313114106 1740 dbSNP
rs41302952 1743 dbSNP
rs546665864 1746 dbSNP
rs1262421864 1747 dbSNP
rs1412443804 1748 dbSNP
rs1014232989 1752 dbSNP
rs1327213917 1753 dbSNP
rs1267541218 1756 dbSNP
rs1224378676 1758 dbSNP
rs1340040605 1763 dbSNP
rs1273453037 1769 dbSNP
rs992770397 1773 dbSNP
rs1327379424 1788 dbSNP
rs773957456 1791 dbSNP
rs764008216 1795 dbSNP
rs1024745699 1803 dbSNP
rs1433485575 1803 dbSNP
rs1385838662 1814 dbSNP
rs946053094 1816 dbSNP
rs999351920 1817 dbSNP
rs375380598 1823 dbSNP
rs926026737 1827 dbSNP
rs78693896 1828 dbSNP
rs1258504773 1831 dbSNP
rs1373401445 1835 dbSNP
rs1040253638 1840 dbSNP
rs548485994 1841 dbSNP
rs1190471127 1845 dbSNP
rs569986491 1851 dbSNP
rs1185596858 1855 dbSNP
rs1204314970 1864 dbSNP
rs1444197895 1865 dbSNP
rs998811999 1869 dbSNP
rs1017503705 1870 dbSNP
rs965948713 1871 dbSNP
rs1226862990 1881 dbSNP
rs1047314771 1886 dbSNP
rs73317069 1887 dbSNP
rs1167875606 1888 dbSNP
rs1360375123 1890 dbSNP
rs1331838693 1892 dbSNP
rs1417728804 1894 dbSNP
rs1004546073 1904 dbSNP
rs929038621 1905 dbSNP
rs1015964047 1906 dbSNP
rs1389554745 1918 dbSNP
rs1184120592 1921 dbSNP
rs562785139 1931 dbSNP
rs1235773658 1933 dbSNP
rs1209716387 1934 dbSNP
rs558562830 1936 dbSNP
rs117333166 1937 dbSNP
rs1319780249 1938 dbSNP
rs1293216088 1945 dbSNP
rs1055984398 1949 dbSNP
rs116182384 1951 dbSNP
rs993114156 1961 dbSNP
rs760032331 1962 dbSNP
rs1309473620 1967 dbSNP
rs73317070 1969 dbSNP
rs1372837983 1981 dbSNP
rs1234825046 1986 dbSNP
rs967300359 1987 dbSNP
rs1281303180 1991 dbSNP
rs1347490597 1994 dbSNP
rs1181291788 1996 dbSNP
rs1473043312 2000 dbSNP
rs903216685 2003 dbSNP
rs1180271207 2008 dbSNP
rs750589861 2014 dbSNP
rs1482961326 2015 dbSNP
rs752800721 2016 dbSNP
rs1224458100 2023 dbSNP
rs1198971218 2025 dbSNP
rs1287140745 2030 dbSNP
rs574553701 2032 dbSNP
rs892959459 2033 dbSNP
rs1007319542 2034 dbSNP
rs1407585406 2035 dbSNP
rs368413400 2037 dbSNP
rs1293844239 2046 dbSNP
rs1438537255 2050 dbSNP
rs1347976847 2051 dbSNP
rs1017412386 2054 dbSNP
rs965898048 2061 dbSNP
rs1193323975 2064 dbSNP
rs1246785479 2068 dbSNP
rs1455848756 2069 dbSNP
rs997851793 2070 dbSNP
rs542013522 2072 dbSNP
rs918520985 2078 dbSNP
rs1452135957 2079 dbSNP
rs762981386 2085 dbSNP
rs557316546 2086 dbSNP
rs1209888160 2087 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545212. RNA binding protein: AGO1. Condition:Control ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55257.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM714644. RNA binding protein: AGO2. Condition:completeT1 ...

- Kishore S; Jaskiewicz L; Burger L; Hausser et al., 2011, Nature methods.

Article - Kishore S; Jaskiewicz L; Burger L; Hausser et al.
- Nature methods, 2011
Cross-linking and immunoprecipitation (CLIP) is increasingly used to map transcriptome-wide binding sites of RNA-binding proteins. We developed a method for CLIP data analysis, and applied it to compare CLIP with photoactivatable ribonucleoside-enhanced CLIP (PAR-CLIP) and to uncover how differences in cross-linking and ribonuclease digestion affect the identified sites. We found only small differences in accuracies of these methods in identifying binding sites of HuR, which binds low-complexity sequences, and Argonaute 2, which has a complex binding specificity. We found that cross-link-induced mutations led to single-nucleotide resolution for both PAR-CLIP and CLIP. Our results confirm the expectation from original CLIP publications that RNA-binding proteins do not protect their binding sites sufficiently under the denaturing conditions used during the CLIP procedure, and we show that extensive digestion with sequence-specific RNases strongly biases the recovered binding sites. This bias can be substantially reduced by milder nuclease digestion conditions.
LinkOut: [PMID: 21572407]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 55257.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545212
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / Control
Location of target site ENST00000370487.3 | 3UTR | UUUUUAUAUGCCAGAUACAGAGAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM714644
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / completeT1, repA
Location of target site ENST00000370487.3 | 3UTR | UUUUUAUAUGCCAGAUACAGAGAAUUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 21572407 / GSE28865
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000370487.3 | 3UTR | UUUUUAUAUGCCAGAUACAGAGAAUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
275 hsa-miR-548ac Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT055863 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT074959 LEPROT leptin receptor overlapping transcript 2 2
MIRT076823 SUZ12 SUZ12 polycomb repressive complex 2 subunit 2 4
MIRT078708 LLGL2 LLGL2, scribble cell polarity complex component 2 2
MIRT099610 ID4 inhibitor of DNA binding 4, HLH protein 2 4
MIRT103362 CBX3 chromobox 3 2 2
MIRT111801 MPZL1 myelin protein zero like 1 2 2
MIRT114050 AKAP11 A-kinase anchoring protein 11 2 12
MIRT133719 SKI SKI proto-oncogene 2 2
MIRT136817 NHLRC3 NHL repeat containing 3 2 6
MIRT149926 LDLR low density lipoprotein receptor 2 2
MIRT166915 TNPO1 transportin 1 2 2
MIRT168142 SOX4 SRY-box 4 2 10
MIRT190787 STRN3 striatin 3 2 4
MIRT207471 RMND5A required for meiotic nuclear division 5 homolog A 2 2
MIRT250951 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT271993 ARF1 ADP ribosylation factor 1 2 4
MIRT282618 IGF1R insulin like growth factor 1 receptor 2 8
MIRT294153 ZNF845 zinc finger protein 845 2 2
MIRT309060 C4ORF3 chromosome 4 open reading frame 3 2 2
MIRT318548 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT319752 LUC7L2 LUC7 like 2, pre-mRNA splicing factor 2 2
MIRT331324 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT337204 TOMM20 translocase of outer mitochondrial membrane 20 2 6
MIRT346145 ALYREF Aly/REF export factor 2 2
MIRT347727 LSM14A LSM14A, mRNA processing body assembly factor 2 2
MIRT350503 MRGBP MRG domain binding protein 2 6
MIRT356409 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT357986 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT374399 M6PR mannose-6-phosphate receptor, cation dependent 2 6
MIRT442727 TMEM158 transmembrane protein 158 (gene/pseudogene) 2 2
MIRT443411 HMX3 H6 family homeobox 3 2 2
MIRT444408 FRMD5 FERM domain containing 5 2 2
MIRT444469 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT444650 HSBP1 heat shock factor binding protein 1 2 2
MIRT444861 EXD2 exonuclease 3'-5' domain containing 2 2 2
MIRT445685 TNFSF15 TNF superfamily member 15 2 2
MIRT446001 CD1D CD1d molecule 2 2
MIRT446074 RABIF RAB interacting factor 2 2
MIRT446308 ACSL3 acyl-CoA synthetase long chain family member 3 2 2
MIRT446432 ABHD2 abhydrolase domain containing 2 2 2
MIRT447269 C3orf30 chromosome 3 open reading frame 30 2 2
MIRT447759 TMCC3 transmembrane and coiled-coil domain family 3 2 2
MIRT448161 P2RY10 purinergic receptor P2Y10 2 2
MIRT449049 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT449275 PALM2 paralemmin 2 2 2
MIRT450122 IMP3 IMP3, U3 small nucleolar ribonucleoprotein 2 2
MIRT450155 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit 2 2
MIRT451289 ZNF101 zinc finger protein 101 2 2
MIRT459253 ADRBK1 G protein-coupled receptor kinase 2 2 2
MIRT462554 NUDT19 nudix hydrolase 19 2 2
MIRT464470 UGCG UDP-glucose ceramide glucosyltransferase 2 2
MIRT465120 TSC22D2 TSC22 domain family member 2 2 4
MIRT467996 SKIL SKI like proto-oncogene 2 2
MIRT468718 SDC4 syndecan 4 2 2
MIRT469269 RHOB ras homolog family member B 2 2
MIRT470675 POLR2D RNA polymerase II subunit D 2 4
MIRT470723 POGK pogo transposable element derived with KRAB domain 2 2
MIRT471438 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT471502 PDE4D phosphodiesterase 4D 2 4
MIRT471988 NR2F2 nuclear receptor subfamily 2 group F member 2 2 4
MIRT472386 NEK7 NIMA related kinase 7 2 2
MIRT475028 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT479411 CDKN1B cyclin dependent kinase inhibitor 1B 2 10
MIRT480514 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT481700 AR androgen receptor 2 2
MIRT482543 ACTB actin beta 2 4
MIRT482627 ABCE1 ATP binding cassette subfamily E member 1 2 2
MIRT484725 INHBA inhibin beta A subunit 2 12
MIRT487778 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491883 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494653 ARNTL aryl hydrocarbon receptor nuclear translocator like 2 2
MIRT497366 SF1 splicing factor 1 2 2
MIRT499156 HSPA1B heat shock protein family A (Hsp70) member 1B 2 8
MIRT502830 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502944 CDC37L1 cell division cycle 37 like 1 2 8
MIRT503942 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT504235 MYO6 myosin VI 2 2
MIRT504453 MC2R melanocortin 2 receptor 2 2
MIRT506022 PURA purine rich element binding protein A 2 2
MIRT508028 BCAT1 branched chain amino acid transaminase 1 2 4
MIRT508299 YES1 YES proto-oncogene 1, Src family tyrosine kinase 2 4
MIRT511515 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT512307 AMER1 APC membrane recruitment protein 1 2 6
MIRT514565 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515657 MYBPC1 myosin binding protein C, slow type 2 2
MIRT518429 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase 2 2
MIRT520378 UBE2D1 ubiquitin conjugating enzyme E2 D1 2 4
MIRT521604 PSMA2 proteasome subunit alpha 2 2 4
MIRT521725 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 4
MIRT522579 MBNL3 muscleblind like splicing regulator 3 2 4
MIRT522731 LRRC55 leucine rich repeat containing 55 2 8
MIRT524547 CDC5L cell division cycle 5 like 2 4
MIRT525371 SYNM synemin 2 2
MIRT526489 PPIA peptidylprolyl isomerase A 2 4
MIRT527197 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT527285 FBLN2 fibulin 2 2 2
MIRT527383 MGARP mitochondria localized glutamic acid rich protein 2 2
MIRT527409 SMU1 DNA replication regulator and spliceosomal factor 2 6
MIRT527454 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT528348 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529104 ZNF100 zinc finger protein 100 2 2
MIRT529317 ATRNL1 attractin like 1 2 2
MIRT529328 PDE5A phosphodiesterase 5A 2 2
MIRT529750 SEL1L SEL1L ERAD E3 ligase adaptor subunit 2 2
MIRT530277 MKRN3 makorin ring finger protein 3 2 2
MIRT531415 TMEM18 transmembrane protein 18 2 2
MIRT532544 WDR13 WD repeat domain 13 2 2
MIRT533245 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 2 2
MIRT534659 RNF20 ring finger protein 20 2 2
MIRT534818 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT537492 FAM169A family with sequence similarity 169 member A 2 2
MIRT538778 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539122 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT540964 SLC25A43 solute carrier family 25 member 43 2 2
MIRT541403 CDC27 cell division cycle 27 2 2
MIRT543353 ZNF829 zinc finger protein 829 2 2
MIRT543623 MFAP3 microfibril associated protein 3 2 2
MIRT543649 YY2 YY2 transcription factor 2 2
MIRT544945 SNCB synuclein beta 2 2
MIRT545327 SPC25 SPC25, NDC80 kinetochore complex component 2 2
MIRT546094 VEZF1 vascular endothelial zinc finger 1 2 2
MIRT548605 DCUN1D3 defective in cullin neddylation 1 domain containing 3 2 2
MIRT548638 DAZAP1 DAZ associated protein 1 2 4
MIRT550318 ZNF681 zinc finger protein 681 2 2
MIRT550412 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 4
MIRT551034 SPPL3 signal peptide peptidase like 3 2 2
MIRT551602 HDGFRP2 HDGF like 2 2 2
MIRT552064 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 4
MIRT552803 YAF2 YY1 associated factor 2 2 2
MIRT553274 TVP23C trans-golgi network vesicle protein 23 homolog C 2 2
MIRT553303 TSPAN3 tetraspanin 3 2 2
MIRT553570 NPM3 nucleophosmin/nucleoplasmin 3 2 2
MIRT554844 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT556069 MTF2 metal response element binding transcription factor 2 2 4
MIRT556898 ITGA2 integrin subunit alpha 2 2 2
MIRT558680 CNIH cornichon family AMPA receptor auxiliary protein 1 1 1
MIRT559032 C20orf24 chromosome 20 open reading frame 24 2 2
MIRT559108 C18orf25 chromosome 18 open reading frame 25 2 2
MIRT559864 GSKIP GSK3B interacting protein 2 2
MIRT560868 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT562268 GRB2 growth factor receptor bound protein 2 2 2
MIRT562419 EIF2S2 eukaryotic translation initiation factor 2 subunit beta 2 2
MIRT562652 ARID1A AT-rich interaction domain 1A 2 4
MIRT563771 ZNF678 zinc finger protein 678 2 2
MIRT564279 DEPDC1B DEP domain containing 1B 2 2
MIRT565253 TRA2B transformer 2 beta homolog 2 4
MIRT565307 TMEM64 transmembrane protein 64 2 2
MIRT566034 RFX1 regulatory factor X1 2 2
MIRT566714 MTMR3 myotubularin related protein 3 2 2
MIRT568087 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568417 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT568766 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569516 THYN1 thymocyte nuclear protein 1 2 2
MIRT571823 PHF19 PHD finger protein 19 2 2
MIRT571995 HOXA9 homeobox A9 2 2
MIRT572174 CELF1 CUGBP Elav-like family member 1 2 2
MIRT572637 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT573756 KHSRP KH-type splicing regulatory protein 2 2
MIRT574089 CCDC132 VPS50, EARP/GARPII complex subunit 2 6
MIRT574311 CMTM6 CKLF like MARVEL transmembrane domain containing 6 2 2
MIRT574512 PSAT1 phosphoserine aminotransferase 1 2 2
MIRT574559 NRBF2 nuclear receptor binding factor 2 2 2
MIRT576686 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT608491 NKTR natural killer cell triggering receptor 2 6
MIRT608640 ATP9A ATPase phospholipid transporting 9A (putative) 2 6
MIRT609231 TMEM189 transmembrane protein 189 2 2
MIRT609561 TCEAL4 transcription elongation factor A like 4 2 2
MIRT610193 FAM49A family with sequence similarity 49 member A 2 2
MIRT610681 SYT2 synaptotagmin 2 2 4
MIRT610725 NAV2 neuron navigator 2 2 2
MIRT610813 SGOL2 shugoshin 2 2 2
MIRT610993 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT611030 KCNK10 potassium two pore domain channel subfamily K member 10 2 2
MIRT611339 SLC2A4 solute carrier family 2 member 4 2 2
MIRT611511 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT611638 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT611856 RPL3L ribosomal protein L3 like 2 2
MIRT611905 TRPC3 transient receptor potential cation channel subfamily C member 3 2 2
MIRT612047 PCNXL2 pecanex homolog 2 2 6
MIRT612340 TRIB2 tribbles pseudokinase 2 2 2
MIRT612870 INO80C INO80 complex subunit C 2 2
MIRT613555 AMPD3 adenosine monophosphate deaminase 3 2 2
MIRT614490 MMS22L MMS22 like, DNA repair protein 2 2
MIRT615098 BRD4 bromodomain containing 4 2 2
MIRT616228 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT617220 GDPGP1 GDP-D-glucose phosphorylase 1 2 2
MIRT617884 ESR1 estrogen receptor 1 2 2
MIRT618344 CD59 CD59 molecule (CD59 blood group) 2 2
MIRT620264 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 2 2
MIRT620660 CCDC108 cilia and flagella associated protein 65 2 2
MIRT620761 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) 2 2
MIRT621416 TXNL1 thioredoxin like 1 2 2
MIRT621676 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT622231 SLC25A51 solute carrier family 25 member 51 2 2
MIRT622377 SALL1 spalt like transcription factor 1 2 2
MIRT622404 RRAGC Ras related GTP binding C 2 2
MIRT622494 RC3H1 ring finger and CCCH-type domains 1 2 2
MIRT623064 NRXN1 neurexin 1 2 2
MIRT623295 MAX MYC associated factor X 2 2
MIRT623691 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT623930 FMNL3 formin like 3 2 2
MIRT623984 FAM208A family with sequence similarity 208 member A 2 2
MIRT624513 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough 2 2
MIRT624668 ARID4A AT-rich interaction domain 4A 2 2
MIRT624756 ANGPTL2 angiopoietin like 2 2 2
MIRT624949 MARCH2 membrane associated ring-CH-type finger 2 2 2
MIRT625968 RNF2 ring finger protein 2 2 2
MIRT626415 KIAA2018 upstream transcription factor family member 3 2 2
MIRT626882 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627157 ZNF652 zinc finger protein 652 2 2
MIRT627613 SFT2D2 SFT2 domain containing 2 2 2
MIRT627744 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT627808 PTEN phosphatase and tensin homolog 2 2
MIRT627820 PRR3 proline rich 3 2 2
MIRT630935 UNC93A unc-93 homolog A 2 2
MIRT635930 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638301 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT638437 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT640281 TCF24 transcription factor 24 2 2
MIRT641979 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 2 2
MIRT644179 GIN1 gypsy retrotransposon integrase 1 2 2
MIRT644439 VDR vitamin D receptor 2 2
MIRT644974 STEAP4 STEAP4 metalloreductase 2 2
MIRT647653 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) 2 2
MIRT648702 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT650120 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT650505 UFM1 ubiquitin fold modifier 1 2 2
MIRT650701 CLNK cytokine dependent hematopoietic cell linker 2 2
MIRT651083 ZNF518B zinc finger protein 518B 2 4
MIRT653644 SLC30A1 solute carrier family 30 member 1 2 2
MIRT653788 SIX4 SIX homeobox 4 2 2
MIRT656773 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT656949 KIAA1456 KIAA1456 2 2
MIRT656981 KDM5A lysine demethylase 5A 2 2
MIRT657225 TOR1AIP2 torsin 1A interacting protein 2 2 4
MIRT657706 GPC5 glypican 5 2 2
MIRT660107 BTBD3 BTB domain containing 3 2 2
MIRT662817 C9orf64 chromosome 9 open reading frame 64 2 2
MIRT665889 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT668140 GINS2 GINS complex subunit 2 2 2
MIRT668566 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT669718 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT685693 TRIM45 tripartite motif containing 45 2 2
MIRT686579 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT687491 NHLRC2 NHL repeat containing 2 2 2
MIRT687805 KCNJ15 potassium voltage-gated channel subfamily J member 15 2 2
MIRT687968 HHIP hedgehog interacting protein 2 2
MIRT689487 SCIMP SLP adaptor and CSK interacting membrane protein 2 2
MIRT689595 NUDT7 nudix hydrolase 7 2 2
MIRT690501 RSRC1 arginine and serine rich coiled-coil 1 2 2
MIRT692290 XRN2 5'-3' exoribonuclease 2 2 2
MIRT693060 KIAA1324 KIAA1324 2 2
MIRT697443 ZFHX3 zinc finger homeobox 3 2 2
MIRT698475 TJP1 tight junction protein 1 2 2
MIRT699033 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699785 SEMA4D semaphorin 4D 2 2
MIRT701463 NEO1 neogenin 1 2 2
MIRT701869 MRO maestro 2 2
MIRT702158 MAP3K1 mitogen-activated protein kinase kinase kinase 1 2 2
MIRT703750 FAM126B family with sequence similarity 126 member B 2 2
MIRT704277 DGS2 DiGeorge syndrome/velocardiofacial syndrome complex 2 2 2
MIRT707956 PGM3 phosphoglucomutase 3 2 2
MIRT712747 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 2 2
MIRT712848 RHOA ras homolog family member A 2 2
MIRT712954 CCBE1 collagen and calcium binding EGF domains 1 2 2
MIRT713119 U2SURP U2 snRNP associated SURP domain containing 2 2
MIRT713148 PKIA cAMP-dependent protein kinase inhibitor alpha 2 2
MIRT715394 TADA3 transcriptional adaptor 3 2 2
MIRT715475 NEGR1 neuronal growth regulator 1 2 2
MIRT715535 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT721159 MYOCD myocardin 2 2
MIRT722719 ZNF460 zinc finger protein 460 2 2
MIRT723130 GTF2F2 general transcription factor IIF subunit 2 2 2
MIRT723259 TMLHE trimethyllysine hydroxylase, epsilon 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-54 Nicotine approved 89594 Microarray Caenorhabditis elegans 23765240 2013 up-regualted
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-548ac Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548ac Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-miR-548ac Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-548ac Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-548ac Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-548ac Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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