miRTarBase - #MIRT355852


—
pre-miRNA Information
pre-miRNA hsa-mir-3689e   
Genomic Coordinates chr9: 134850570 - 134850641
Description Homo sapiens miR-3689e stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3689e
Sequence 7| UGUGAUAUCAUGGUUCCUGGGA |28
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs796680971 2 dbSNP
rs1260021280 4 dbSNP
rs951515835 6 dbSNP
rs1244734523 9 dbSNP
rs1286185090 10 dbSNP
rs922384128 14 dbSNP
rs1485140592 16 dbSNP
Putative Targets

Gene Information
Gene Symbol SGMS2   
Synonyms SMS2
Description sphingomyelin synthase 2
Transcript NM_001136257   
Other Transcripts NM_001136258 , NM_152621   
Expression
Putative miRNA Targets on SGMS2
3'UTR of SGMS2
(miRNA target sites are highlighted)		 
>SGMS2|NM_001136257|3'UTR
   1 GGAGCAAAACAAAGGCATCAGCTCTTACACCAAAAGAGTTAACGCTGTAACCAAAGGTATAGTTTTGTTTTTTATTTTAG
  81 GAGAACTGACTGGTAAATGAAGAAATGGACCAAATTTTGTGTAAACGATTAGAAAGATGAACAAAGTATTGCCCTTTGAC
 161 TGGTTTTCTTCTTCATCCTGAGAAAGATACATTCTCTTGCAGCTCTTCATTCATTGGTGACAAGCCCCCACCCCGGGACT
 241 TTACTAATGAGCTTGTTAAAGAGGTGCCAAAGAACATATTCCTCCTTTCTTTATTCTTTCTCCACCAAAACCCTCTACTT
 321 CAGAATTTTTTCAGGATATTTTTCAGCCCAAGGTCAGAAGAATGTGTTAATATTTTAAATAAAATATCTGGACATCTACA
 401 GCCACTGTGTAAATAGAACTGCCTAATGTTGAGAGTGGTTTTTAGCATTAGGTTTAGCAAGGGGGAGATCCGTGGGTTGT
 481 GCGTCAGCTTTGGGTGAATTTTGTTTCTACCCTGTCACGGGGAAAGTTCGGGTTGAGTCCAGGAGTGCACACTGCTGCTG
 561 CCACCCAATGCGCTACATATCACTTTTTTTTGTTTTGTTTTGTTTTGTTTTTAAAAGATCATTTTATCTTAAAAAGGAAA
 641 GCTGATCCAAGTAAACACGAAAGTATTTGACACACCCCACAGATTTTACATGTGTGTAAATGTTTCACTTTAAAATCTCT
 721 ATGACAGATACACAGGAAACATGAGATGGTTTCTGCTAATGAGTGGCCCTTGAGTACACACTTAGATGCTGTCTGCCCTG
 801 TAAATTTGGATCTGGTGCCCCAGGGCAGTCAACTCTTCTAGCACAGGCTGAAAACACGTGTGTGTCAACTGAGGTTCACA
 881 CCACTTGGGGAATGAGCCTGTTTTCTTTCCAGGTCAGGCCCTGGTGTGAGATCAATTTTAGGGCTCCTAATTGGAGCACA
 961 GAAATGTATTTGGTCAAATTTCATTGAAGGTGATTTCTTCCTTTTTCTGTTGTACTTTATGGAAAAACCAAGATGGAACC
1041 TGAAAGTTAATGTATCCTTGCTTTTAGCAAGAGACTCAGTTTCTTATAACTAGTCCTAAGGACATATGCCGCAATTGAGT
1121 AATTTTACTTTTACCCTATGAAAATAACATGGTGCTGCACTATAATATACTCTCGGAATCAGTGTGTTAGTTACAGCTAT
1201 ACAGTGAAGGGGGATAACTGTTTCTAAATTTCTTTAAGGTGATGCCAAAAAATGGATTAAAAAATCTGATCAGATTTAAT
1281 GTTACCAGATTTAGTGCATTATTTAATGCTATTGGATCTTTTGGATAATTCTTGGCTTAATTTCTTAGCTACTTGAAGGT
1361 TAATTTGCAAGACTTTTAAAACCTTAGAAAAGTTTTAAGGTTGCAAAGTTATCAACACTGGGGCAGAGGGTGGAGAGGCC
1441 AATGCGGGTAGAAGGAGGCAGTTATGTTTATATTGAAGGTGAAATTTTTCTTTCATTTAGAATGGAAAACATCCCCAAAT
1521 GTATCATTATAAACTAGTCAGCCTTGACTACACAAAATTGACCTTTAAGTTGCTTGAGAAAAACACAATGCAAATCGTTC
1601 AGAAGGGTCAACATCCTTTGGTGCTAAAATCTTGTGTATGTTTTCAGAATGGCTTTTTCTGTATGTTATAGAATAATCAC
1681 TAAAGGAAAGGTAGTTGAATTTAAAGTCATGAAGCAAGACTCTTTAATTCAGTTATTTTAAACAAGAATTAAAACCCCAA
1761 ACATCCTTGGCAGGCTTTGAAGCACACAGAATTTTCTAGTATTTCTTATTAAATACACCAATAATAAACATATACTTAGT
1841 TTACCTGATGAGTTTAGACATAATTCTATATAATGTTCGCTTATATTCATTTATTAACTAGCAACACTTGTGCAAGAACA
1921 AGGTATTCTGCTTGAAAACACTGATTTTTAAGTTCCTGTTGCCCGATTGTAAAGAAAATCATCTGACACAGAAGCCTGGA
2001 TTTTGCTCTCCTAACACTGGTGTTTTCCTTGAGCCTCTAATTCAAATAAAACAAACTGATACACCTTACAGCCTTATTCA
2081 TCTGTGTCTGGATAACTCACTTTTCATCTATTGAATAAGAAAAAGTGTTTAAACTTAATAAAATAAAAAATTGTGCACCA
2161 ATTACTACAGATCCTTGAAACAGTAAGCCTTGGATTTTAGTCAAGTAATCCAGTTTTTTTTTAATTTAAAAAAAACCATC
2241 ACCTTTTAAAGAACTTTAAAAACACCTGTGATGCCAATGTGGACATTGCCGCTGCCATGTCTTTACACGCATGTGTCGTA
2321 TAGCTCTGTCATCGAGTTGAGGAAGTCCATGGTTTGCAAATAAGGGTGGGGGAATCAAAATTTCAAGATGGAAAAATAAA
2401 ACAAATAGTAAAACCCATTTACATGTAGGAAAGAAAAGTTGAGCTTCAACCCAATGTGCCACTTTGATATAAAACAAGTA
2481 TGATATATATATAAACTGAAGATATAAAACAAGTATGATCTTGCCTTTGAAATCATAAATGTTTGGGGTACCTGTTCTTT
2561 GCCAGTTAAGATACATATCTTATTATCTTTGTTTTTTTCAAGTCTATGCTCCTGTTTGAAGCTTTTCCTGTAATTTAGGT
2641 TGTCTGTGAAATACCTATAACATATAATTCCTATAGAGTATGCCACATTTTTTTTCTAACTCATTTCAAATGAAATTCTC
2721 TCAGATTCTAGTTTTTGAGCTTGTCCACTAGATCTGAAAATAAAGCATCCTTTCCTGAGTCCACTTGAACTAATTGTGAA
2801 TTTGTTACTTAATTTACTGGCATCTTGGGAAACAAGTTTTGCTGTGGCAGGAAGGCTGTTTTGAGAGTGAGCGTTGAGTC
2881 TACTCTGGTTTGTGGATGACATTGCATTAGGGTTATTTCCTGTATTACCAGTGCCCCCTTGTGGCAATATACTTTATGAC
2961 TTGGAATGCAAACACCACTTTTAAAAGCCTGTTTTCAAGTTTTTGAAAGGCATTTGTTTTCTGTTGTTTGCCAATAATCT
3041 GAAAGTATCATGTGAAAGGAATTATTTTAAAAGCATTTTAAACCTTTCCCAAAGGTAAAATGTGCTCAGATTATAGGCAC
3121 TTGTAATTCTAACCTTGTATCCATTTGATCAAAGAAAATTTGTAGAACATTTTTACCTCTCATGATCACAATCATTAGTG
3201 TCTCCCTTTATAACGACCTATGTTTTGTTTACTTTGAAACACCAAATTTGTTGTCTTGGTTTTTTTTACATGACAGAACT
3281 CATGCAGTTTCTTTTTTAGTTGAAAGTTCACATCTTGCCCCTTGAATAGTTTGAACATTTCTTTCTTAATTCTTTTTTGT
3361 TTTTGTTTTGCACTGTAAAACTGATGAAAACTTTAAGCCAATCTTAATGCACTAGCCTCTGTAGTGTAAGGAAGTGTGAG
3441 AAGGAGTTTCTTAATGAGTTTACACGTTTAAATCAAGCATATTATAAGTTATATGCCATGTGTTGAAGGCTTTTCTATTT
3521 ATATATATAAAGATTTTTAGTATTTGTTTTTAGTGTCCTTGTGTTGCAATAATTTAACTCCTTTGACTCAGTTGCTGAAA
3601 ATATTTCTTCTATTAAGAAGTGCTCTTGACTTCAACACCCAAACACTGAAAATCATGTCAATGTTACCCAAAGATAAGTT
3681 TTTATACAGATACACACCTTATAAGTTCTGATTTATTTTCTTACTCATTATGCTGTGTTCTAAATAAATCATGAATGAGA
3761 AGAGTGCTTTATTGTGAAATTATTTAAAACTGTCCTTTAAAAGAAAAAGAGGAAACGATGAACAAAAACTAATCTAATTG
3841 CCAAGTTAGAATTCATTATTTAATTTACCTCCTATGCAATGATTAATGCTGCAAAATGTATGGTTATGTTACCGTATATT
3921 CACAAAAGAAATATTATTACAAGGTTTCAGAGGTAGCCAATTGCATTCTTTTGGAAATTTACTGTACTGTTTCAATGTGT
4001 TAAGTGCCTTGTTGTAAAGTAAAATTTTAAGTCTAGATTCATTATTTTCCTGACATATATTTTTCATTATGATATCTACT
4081 GTATGCTATTGTGATAGTTTTATGAAATGCTTACATTTTAATCAAATATGTAAATTTCAGAAGCTCTTTTTTCCTACCCA
4161 CCAGTACCTTAATCATTGGTTTATCACATTGGATTCAAATTCAGGTTCCTTTTTTGATAAAGAGGAAATTTGTTTTCCAT
4241 GCTTGTGATTTTGTGTTTGTAAACATTTCAGGAGGAATTTAGGAGTGTAACTATAGTTTATACTTCTATAATGTTGTCTT
4321 ACATTTACATTTTTAAGTGCCTAATTGTTAAAACTGATTTATGTTTCTCTTCTAAAGAGGATATGTGTACTTGGTTTCTA
4401 ATCTCTTTGGTTTTGCTTTTTAAAAAATGCAAGAGCCTATACTTTGTATTTACCTAATAAACCACAGTGACATCAACAGT
4481 CTTTTCAAAATTAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGGUCCUUGGUACUAUAGUGu 5'
            | | | :|:|  ||||||| 
Target 5' ccCAATGCGCTA-CATATCACt 3'
 564 - 584 147.00 -10.70
2 
miRNA  3' aggguccuUGGUACUAUAG-UGu 5'
                  |::|||||||| || 
Target 5' tatttttcATTATGATATCTACt 3'
 4058 - 4080 130.00 -10.10
3 
miRNA  3' agGGUCCUUGGUAC---UAUAGUGu 5'
            |::  ||:||||   ||:|:|| 
Target 5' caCTGAAAATCATGTCAATGTTACc 3'
 3644 - 3668 128.00 -9.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30193390 33 COSMIC
COSN30159502 127 COSMIC
COSN21074299 137 COSMIC
COSN30209778 998 COSMIC
COSN25074564 1310 COSMIC
COSN15662503 1416 COSMIC
COSN1284986 1613 COSMIC
COSN17183256 1853 COSMIC
COSN16473520 2475 COSMIC
COSN23193789 2705 COSMIC
COSN14448294 2965 COSMIC
COSN22193207 2967 COSMIC
COSN5548488 3471 COSMIC
COSN30431660 3751 COSMIC
COSN1978940 4028 COSMIC
COSN32058202 4307 COSMIC
COSN9898581 4430 COSMIC
rs13103176 2821 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1160800639 3 dbSNP
rs948268947 13 dbSNP
rs754300295 18 dbSNP
rs187385708 21 dbSNP
rs1408121874 29 dbSNP
rs1450371528 30 dbSNP
rs765814891 33 dbSNP
rs1373751834 34 dbSNP
rs751076863 37 dbSNP
rs374224142 41 dbSNP
rs370091879 44 dbSNP
rs372939839 45 dbSNP
rs755902838 46 dbSNP
rs1446676494 49 dbSNP
rs1289969398 57 dbSNP
rs1032399220 61 dbSNP
rs372810221 62 dbSNP
rs1209136926 68 dbSNP
rs1366407479 68 dbSNP
rs867752398 72 dbSNP
rs774986385 80 dbSNP
rs1007406510 84 dbSNP
rs990696238 88 dbSNP
rs1021508500 92 dbSNP
rs1222403536 93 dbSNP
rs1251257314 103 dbSNP
rs1174279787 120 dbSNP
rs1471723848 127 dbSNP
rs566052148 128 dbSNP
rs534727874 132 dbSNP
rs1195914212 135 dbSNP
rs1413121771 147 dbSNP
rs1248022860 149 dbSNP
rs1219956405 157 dbSNP
rs760047652 160 dbSNP
rs111724428 163 dbSNP
rs1031038111 166 dbSNP
rs1207364182 173 dbSNP
rs1311254699 175 dbSNP
rs1301465208 177 dbSNP
rs983290426 183 dbSNP
rs907553300 192 dbSNP
rs956994724 197 dbSNP
rs992281981 198 dbSNP
rs918056662 202 dbSNP
rs1301174194 203 dbSNP
rs1465560836 204 dbSNP
rs1360028717 206 dbSNP
rs775834154 209 dbSNP
rs568514489 210 dbSNP
rs1389921645 227 dbSNP
rs1037873350 229 dbSNP
rs1189560849 230 dbSNP
rs1430839370 232 dbSNP
rs539117748 235 dbSNP
rs149845088 236 dbSNP
rs1049960873 237 dbSNP
rs1036430898 251 dbSNP
rs897518009 256 dbSNP
rs1212534373 262 dbSNP
rs1339858683 263 dbSNP
rs1273673379 274 dbSNP
rs1369464005 275 dbSNP
rs1407591164 280 dbSNP
rs1328146159 282 dbSNP
rs1309518710 284 dbSNP
rs891297741 285 dbSNP
rs571343146 287 dbSNP
rs773276666 287 dbSNP
rs1315068932 297 dbSNP
rs757267233 299 dbSNP
rs1243826191 303 dbSNP
rs765215200 306 dbSNP
rs1463798032 310 dbSNP
rs3215039 326 dbSNP
rs933046887 326 dbSNP
rs1164680922 327 dbSNP
rs150716652 327 dbSNP
rs200278270 337 dbSNP
rs771059514 338 dbSNP
rs557445237 345 dbSNP
rs1007353854 350 dbSNP
rs902529776 354 dbSNP
rs758228059 356 dbSNP
rs1000896211 359 dbSNP
rs202221701 399 dbSNP
rs1021456305 409 dbSNP
rs1263653677 430 dbSNP
rs1442144507 436 dbSNP
rs1243954264 438 dbSNP
rs1322206847 448 dbSNP
rs1032743058 463 dbSNP
rs779690958 468 dbSNP
rs1473405207 470 dbSNP
rs1393564266 472 dbSNP
rs991308960 473 dbSNP
rs1458884649 476 dbSNP
rs1024809579 479 dbSNP
rs536359763 483 dbSNP
rs983344295 484 dbSNP
rs552825548 487 dbSNP
rs1410857044 489 dbSNP
rs1182044732 498 dbSNP
rs1025068060 504 dbSNP
rs1395159657 510 dbSNP
rs963248909 514 dbSNP
rs1468865127 515 dbSNP
rs144910941 519 dbSNP
rs909414152 525 dbSNP
rs921590193 531 dbSNP
rs1280395313 533 dbSNP
rs538593955 536 dbSNP
rs1051911899 537 dbSNP
rs149023899 540 dbSNP
rs972367110 542 dbSNP
rs1397396919 548 dbSNP
rs1296824542 560 dbSNP
rs370556281 562 dbSNP
rs557007700 569 dbSNP
rs544394110 572 dbSNP
rs1344576367 574 dbSNP
rs11945554 578 dbSNP
rs1454537851 580 dbSNP
rs1254882011 582 dbSNP
rs888866238 584 dbSNP
rs943159692 584 dbSNP
rs529882498 588 dbSNP
rs878951727 588 dbSNP
rs904390678 588 dbSNP
rs999157224 588 dbSNP
rs189653817 593 dbSNP
rs1031602675 597 dbSNP
rs1443395940 598 dbSNP
rs76039450 608 dbSNP
rs78518316 609 dbSNP
rs78629341 610 dbSNP
rs1373608535 612 dbSNP
rs1188445827 613 dbSNP
rs1296107383 621 dbSNP
rs1435045568 623 dbSNP
rs1366511507 631 dbSNP
rs535248492 643 dbSNP
rs1447072364 647 dbSNP
rs867609079 659 dbSNP
rs895098765 660 dbSNP
rs114955459 661 dbSNP
rs1024984237 670 dbSNP
rs1186385455 677 dbSNP
rs1025020984 680 dbSNP
rs969453816 692 dbSNP
rs144694967 696 dbSNP
rs1004695348 701 dbSNP
rs963597101 708 dbSNP
rs972695674 716 dbSNP
rs1014698493 722 dbSNP
rs1272981559 723 dbSNP
rs1228044974 730 dbSNP
rs773477796 734 dbSNP
rs1432359365 735 dbSNP
rs769426445 735 dbSNP
rs1338155939 738 dbSNP
rs954484283 741 dbSNP
rs921617346 751 dbSNP
rs1376853139 758 dbSNP
rs953128006 761 dbSNP
rs114154158 766 dbSNP
rs1437276309 769 dbSNP
rs1298407461 773 dbSNP
rs1428798586 782 dbSNP
rs911621515 787 dbSNP
rs1420224403 792 dbSNP
rs541173153 798 dbSNP
rs1471879896 816 dbSNP
rs943107429 818 dbSNP
rs945764739 822 dbSNP
rs571559962 823 dbSNP
rs1258023253 825 dbSNP
rs925763184 827 dbSNP
rs531130187 829 dbSNP
rs368975377 841 dbSNP
rs1335117721 845 dbSNP
rs1266711722 854 dbSNP
rs1356199933 858 dbSNP
rs1014622668 859 dbSNP
rs1233292654 861 dbSNP
rs779605769 871 dbSNP
rs760826513 873 dbSNP
rs895159788 875 dbSNP
rs1441260346 881 dbSNP
rs550858800 881 dbSNP
rs746358465 886 dbSNP
rs1330582811 897 dbSNP
rs182300232 898 dbSNP
rs1002265207 902 dbSNP
rs1261771401 903 dbSNP
rs1016369244 910 dbSNP
rs772586017 911 dbSNP
rs1196247208 916 dbSNP
rs1476221577 932 dbSNP
rs185173009 934 dbSNP
rs1181689817 937 dbSNP
rs1480601440 941 dbSNP
rs1234982045 944 dbSNP
rs1219772309 950 dbSNP
rs766772291 952 dbSNP
rs759836860 959 dbSNP
rs1274288538 961 dbSNP
rs906657630 965 dbSNP
rs1336258992 966 dbSNP
rs553028623 969 dbSNP
rs1222874785 976 dbSNP
rs1373559908 983 dbSNP
rs1281080215 985 dbSNP
rs189979323 989 dbSNP
rs776051591 1002 dbSNP
rs987710130 1008 dbSNP
rs1326497519 1013 dbSNP
rs17564275 1019 dbSNP
rs1386513616 1020 dbSNP
rs1289414433 1030 dbSNP
rs558609700 1037 dbSNP
rs964361190 1041 dbSNP
rs963507743 1043 dbSNP
rs1410352906 1057 dbSNP
rs978449671 1066 dbSNP
rs1477896575 1074 dbSNP
rs1254250494 1078 dbSNP
rs1216075706 1079 dbSNP
rs994773394 1087 dbSNP
rs934444969 1088 dbSNP
rs1214375134 1103 dbSNP
rs1317161021 1103 dbSNP
rs1285903577 1105 dbSNP
rs1217332465 1108 dbSNP
rs1052950733 1111 dbSNP
rs146681001 1112 dbSNP
rs140346533 1122 dbSNP
rs1362889903 1123 dbSNP
rs987159297 1134 dbSNP
rs1331908484 1136 dbSNP
rs1454323049 1139 dbSNP
rs554598391 1146 dbSNP
rs1228074226 1153 dbSNP
rs1434541731 1155 dbSNP
rs949980303 1160 dbSNP
rs182567152 1163 dbSNP
rs1396094117 1168 dbSNP
rs1044352084 1172 dbSNP
rs188639270 1174 dbSNP
rs977129625 1175 dbSNP
rs1002212877 1176 dbSNP
rs1485907672 1181 dbSNP
rs1209859140 1182 dbSNP
rs1207554825 1184 dbSNP
rs1346640380 1186 dbSNP
rs542274560 1189 dbSNP
rs899243317 1195 dbSNP
rs1207553920 1197 dbSNP
rs1294755139 1206 dbSNP
rs1382912445 1208 dbSNP
rs994021188 1215 dbSNP
rs1268926862 1224 dbSNP
rs764626178 1229 dbSNP
rs1026468239 1236 dbSNP
rs1480553019 1240 dbSNP
rs890641546 1243 dbSNP
rs924114141 1253 dbSNP
rs1009076724 1260 dbSNP
rs1017821787 1265 dbSNP
rs1428648036 1267 dbSNP
rs1181077168 1276 dbSNP
rs964310285 1286 dbSNP
rs978397229 1303 dbSNP
rs936803534 1312 dbSNP
rs1257707215 1313 dbSNP
rs1212829247 1316 dbSNP
rs559759288 1318 dbSNP
rs916839367 1323 dbSNP
rs1250728032 1326 dbSNP
rs1159687734 1331 dbSNP
rs948315350 1335 dbSNP
rs575726285 1338 dbSNP
rs906543173 1342 dbSNP
rs528564713 1349 dbSNP
rs17564297 1354 dbSNP
rs1356409393 1362 dbSNP
rs1315006328 1368 dbSNP
rs1295360783 1374 dbSNP
rs1396201355 1380 dbSNP
rs564949004 1383 dbSNP
rs1464002998 1396 dbSNP
rs1367162856 1403 dbSNP
rs979982046 1405 dbSNP
rs995056512 1406 dbSNP
rs1028809521 1407 dbSNP
rs927197572 1412 dbSNP
rs1306432040 1420 dbSNP
rs941295242 1425 dbSNP
rs1352660081 1430 dbSNP
rs889064900 1436 dbSNP
rs750407365 1439 dbSNP
rs1481584322 1440 dbSNP
rs564634209 1446 dbSNP
rs1271181722 1447 dbSNP
rs572952568 1460 dbSNP
rs1224699130 1468 dbSNP
rs899189627 1470 dbSNP
rs967001466 1471 dbSNP
rs371154195 1473 dbSNP
rs766299728 1503 dbSNP
rs540459024 1504 dbSNP
rs1048292658 1506 dbSNP
rs183982180 1510 dbSNP
rs551233564 1511 dbSNP
rs1393439956 1515 dbSNP
rs1033149938 1524 dbSNP
rs1009025863 1528 dbSNP
rs1017769669 1529 dbSNP
rs1460502948 1530 dbSNP
rs199694696 1548 dbSNP
rs112408998 1551 dbSNP
rs530304954 1585 dbSNP
rs948348215 1589 dbSNP
rs955917330 1597 dbSNP
rs1249194140 1598 dbSNP
rs1251109265 1612 dbSNP
rs1192910597 1613 dbSNP
rs1468823799 1616 dbSNP
rs982291814 1620 dbSNP
rs1483882827 1623 dbSNP
rs1275156749 1624 dbSNP
rs1177580703 1626 dbSNP
rs546887744 1630 dbSNP
rs566546531 1636 dbSNP
rs1255297049 1637 dbSNP
rs1261513427 1640 dbSNP
rs1241707578 1644 dbSNP
rs192584697 1668 dbSNP
rs552335757 1671 dbSNP
rs940666653 1672 dbSNP
rs1166875852 1679 dbSNP
rs1385892471 1686 dbSNP
rs183665752 1691 dbSNP
rs1373745851 1694 dbSNP
rs971180130 1697 dbSNP
rs1429207861 1701 dbSNP
rs1327348758 1711 dbSNP
rs1398440944 1716 dbSNP
rs1166884623 1723 dbSNP
rs1372648172 1737 dbSNP
rs1443286791 1738 dbSNP
rs1302621142 1740 dbSNP
rs1036424140 1748 dbSNP
rs1454656526 1766 dbSNP
rs1398274125 1786 dbSNP
rs1254746665 1787 dbSNP
rs1316390970 1789 dbSNP
rs1446494161 1790 dbSNP
rs927143606 1793 dbSNP
rs1359475768 1800 dbSNP
rs899270179 1805 dbSNP
rs1345934032 1808 dbSNP
rs930733880 1814 dbSNP
rs1280071839 1822 dbSNP
rs1050724757 1827 dbSNP
rs1227049815 1832 dbSNP
rs1350759444 1834 dbSNP
rs1268931823 1839 dbSNP
rs941242892 1849 dbSNP
rs888915576 1850 dbSNP
rs1325329818 1851 dbSNP
rs754790891 1859 dbSNP
rs1008827025 1869 dbSNP
rs1383595130 1879 dbSNP
rs188316836 1883 dbSNP
rs1255160099 1885 dbSNP
rs1435087467 1889 dbSNP
rs1482169972 1890 dbSNP
rs974420338 1898 dbSNP
rs1166055397 1901 dbSNP
rs1475153423 1902 dbSNP
rs145498682 1906 dbSNP
rs929307863 1908 dbSNP
rs1243686199 1920 dbSNP
rs1257060388 1926 dbSNP
rs780776469 1939 dbSNP
rs998543366 1941 dbSNP
rs1186751212 1965 dbSNP
rs1271568761 1966 dbSNP
rs1392163902 1968 dbSNP
rs1032664790 1969 dbSNP
rs1410723823 1974 dbSNP
rs1270280350 1984 dbSNP
rs752368595 1988 dbSNP
rs957381247 2000 dbSNP
rs1311888674 2001 dbSNP
rs890540911 2006 dbSNP
rs1012667907 2016 dbSNP
rs1337901091 2018 dbSNP
rs944827851 2019 dbSNP
rs1397053810 2021 dbSNP
rs1365114250 2025 dbSNP
rs1039165832 2026 dbSNP
rs1474265346 2027 dbSNP
rs1417465662 2028 dbSNP
rs1188898817 2034 dbSNP
rs900703478 2036 dbSNP
rs1231563757 2038 dbSNP
rs1276396634 2040 dbSNP
rs1204190998 2045 dbSNP
rs1438907854 2049 dbSNP
rs868243544 2057 dbSNP
rs191621168 2063 dbSNP
rs1200052600 2072 dbSNP
rs1331988032 2073 dbSNP
rs1292347013 2078 dbSNP
rs1000381411 2081 dbSNP
rs1380836513 2087 dbSNP
rs1055130774 2110 dbSNP
rs574655294 2111 dbSNP
rs969497127 2114 dbSNP
rs1333252268 2117 dbSNP
rs533944226 2118 dbSNP
rs1393866078 2125 dbSNP
rs928195889 2127 dbSNP
rs1010319441 2137 dbSNP
rs1405996394 2145 dbSNP
rs962251801 2150 dbSNP
rs77167505 2151 dbSNP
rs1192279629 2154 dbSNP
rs1272021519 2162 dbSNP
rs1213702827 2171 dbSNP
rs920602366 2182 dbSNP
rs572965470 2189 dbSNP
rs1310155440 2205 dbSNP
rs1281694092 2211 dbSNP
rs545080575 2214 dbSNP
rs572414982 2214 dbSNP
rs777664142 2214 dbSNP
rs565065397 2218 dbSNP
rs1263600626 2219 dbSNP
rs1326685292 2222 dbSNP
rs1050498564 2223 dbSNP
rs1343720553 2224 dbSNP
rs1382575634 2228 dbSNP
rs575591357 2228 dbSNP
rs944496104 2229 dbSNP
rs1193793224 2236 dbSNP
rs1454224989 2236 dbSNP
rs58042981 2237 dbSNP
rs918503322 2238 dbSNP
rs561586092 2245 dbSNP
rs1423341254 2255 dbSNP
rs530350273 2257 dbSNP
rs547138004 2284 dbSNP
rs1231736014 2286 dbSNP
rs560654172 2290 dbSNP
rs184966144 2291 dbSNP
rs1039114783 2292 dbSNP
rs1388630721 2302 dbSNP
rs780549756 2307 dbSNP
rs148033475 2309 dbSNP
rs552300913 2310 dbSNP
rs1362619582 2312 dbSNP
rs1273808062 2318 dbSNP
rs1365044425 2324 dbSNP
rs1013090536 2334 dbSNP
rs1054673692 2335 dbSNP
rs1178844443 2337 dbSNP
rs776877699 2350 dbSNP
rs1210502189 2354 dbSNP
rs1416813721 2362 dbSNP
rs1010521320 2368 dbSNP
rs892039457 2368 dbSNP
rs1488423014 2371 dbSNP
rs1264869488 2372 dbSNP
rs1226457423 2390 dbSNP
rs564263229 2398 dbSNP
rs190208219 2403 dbSNP
rs796315550 2422 dbSNP
rs181859458 2424 dbSNP
rs1305651153 2425 dbSNP
rs1294948128 2442 dbSNP
rs187282517 2455 dbSNP
rs1003691595 2460 dbSNP
rs1035138301 2467 dbSNP
rs1034110934 2471 dbSNP
rs962500475 2480 dbSNP
rs1220935879 2483 dbSNP
rs1376470011 2483 dbSNP
rs995746429 2487 dbSNP
rs1460924755 2488 dbSNP
rs568315010 2502 dbSNP
rs1489582255 2505 dbSNP
rs972301769 2508 dbSNP
rs920597816 2514 dbSNP
rs986759882 2525 dbSNP
rs911869663 2536 dbSNP
rs966031882 2546 dbSNP
rs1256631324 2548 dbSNP
rs952048718 2550 dbSNP
rs986635732 2574 dbSNP
rs533856193 2584 dbSNP
rs1200484370 2588 dbSNP
rs1411653883 2592 dbSNP
rs922022521 2595 dbSNP
rs368659487 2607 dbSNP
rs1320065981 2612 dbSNP
rs553683595 2618 dbSNP
rs1291462552 2628 dbSNP
rs1232934214 2637 dbSNP
rs1315284860 2641 dbSNP
rs944759401 2641 dbSNP
rs1390014926 2658 dbSNP
rs753401018 2661 dbSNP
rs576604601 2663 dbSNP
rs1299217540 2674 dbSNP
rs1322288898 2678 dbSNP
rs1040264235 2681 dbSNP
rs1347660565 2686 dbSNP
rs1162126423 2690 dbSNP
rs539294806 2696 dbSNP
rs1368626855 2698 dbSNP
rs1406361147 2699 dbSNP
rs913426455 2701 dbSNP
rs1303414956 2703 dbSNP
rs1417078407 2704 dbSNP
rs558616306 2711 dbSNP
rs1179202983 2713 dbSNP
rs575659612 2722 dbSNP
rs1459002669 2723 dbSNP
rs778666876 2732 dbSNP
rs1281147537 2738 dbSNP
rs1213083895 2747 dbSNP
rs892807015 2772 dbSNP
rs532798074 2776 dbSNP
rs1044437551 2777 dbSNP
rs1316678188 2780 dbSNP
rs906992076 2785 dbSNP
rs561142652 2796 dbSNP
rs1002571906 2799 dbSNP
rs141802336 2801 dbSNP
rs1323329063 2805 dbSNP
rs1369342782 2805 dbSNP
rs897962768 2817 dbSNP
rs13103176 2821 dbSNP
rs1361738385 2823 dbSNP
rs1223438520 2826 dbSNP
rs150163545 2828 dbSNP
rs1363041211 2829 dbSNP
rs1158954112 2844 dbSNP
rs1441479058 2845 dbSNP
rs1251043066 2856 dbSNP
rs748004867 2859 dbSNP
rs952378061 2859 dbSNP
rs1025881297 2866 dbSNP
rs986178200 2870 dbSNP
rs1482238622 2873 dbSNP
rs532746033 2874 dbSNP
rs1346417270 2876 dbSNP
rs1303310299 2879 dbSNP
rs1231943267 2880 dbSNP
rs1331202365 2883 dbSNP
rs966155757 2885 dbSNP
rs1184418390 2889 dbSNP
rs1383719819 2902 dbSNP
rs1298639263 2903 dbSNP
rs1233874852 2920 dbSNP
rs886964981 2926 dbSNP
rs976126872 2927 dbSNP
rs1472743535 2930 dbSNP
rs1172907939 2932 dbSNP
rs1478289784 2935 dbSNP
rs924449061 2938 dbSNP
rs1379480990 2971 dbSNP
rs1162019060 2973 dbSNP
rs566609296 2977 dbSNP
rs138731297 2984 dbSNP
rs1163762963 2994 dbSNP
rs1264156477 2996 dbSNP
rs1219336713 2997 dbSNP
rs1019498935 2998 dbSNP
rs763031566 2999 dbSNP
rs1201562322 3024 dbSNP
rs562559806 3028 dbSNP
rs914520920 3052 dbSNP
rs948633721 3053 dbSNP
rs879204887 3061 dbSNP
rs1276119155 3076 dbSNP
rs1407685105 3111 dbSNP
rs974711748 3118 dbSNP
rs1278399121 3128 dbSNP
rs1330626569 3135 dbSNP
rs1401663000 3164 dbSNP
rs1373425415 3167 dbSNP
rs1044076166 3183 dbSNP
rs766286411 3197 dbSNP
rs1404194376 3198 dbSNP
rs1166287275 3200 dbSNP
rs1336181998 3206 dbSNP
rs1475124105 3210 dbSNP
rs1028984315 3211 dbSNP
rs1474325862 3215 dbSNP
rs906877263 3215 dbSNP
rs990272283 3216 dbSNP
rs938440106 3221 dbSNP
rs1444690538 3223 dbSNP
rs1271495571 3225 dbSNP
rs1036710212 3236 dbSNP
rs149343519 3250 dbSNP
rs1447164361 3253 dbSNP
rs1282390438 3255 dbSNP
rs1258084292 3256 dbSNP
rs533661021 3259 dbSNP
rs1246804674 3260 dbSNP
rs1028224412 3261 dbSNP
rs888068786 3271 dbSNP
rs928870607 3284 dbSNP
rs1465213474 3288 dbSNP
rs10011410 3290 dbSNP
rs1401153088 3293 dbSNP
rs1172827018 3297 dbSNP
rs1340283786 3319 dbSNP
rs1197825153 3322 dbSNP
rs189226637 3324 dbSNP
rs796478866 3327 dbSNP
rs1182872740 3331 dbSNP
rs759291813 3334 dbSNP
rs1055458055 3338 dbSNP
rs966002059 3344 dbSNP
rs976179081 3345 dbSNP
rs181942136 3346 dbSNP
rs547125583 3348 dbSNP
rs1332301933 3351 dbSNP
rs886909449 3351 dbSNP
rs956301157 3353 dbSNP
rs1183667029 3359 dbSNP
rs1389083514 3360 dbSNP
rs1460134795 3366 dbSNP
rs1288697290 3367 dbSNP
rs990030428 3371 dbSNP
rs914384289 3372 dbSNP
rs948705485 3375 dbSNP
rs1358174694 3376 dbSNP
rs979954249 3386 dbSNP
rs1445960085 3388 dbSNP
rs1019444775 3398 dbSNP
rs899751387 3399 dbSNP
rs996747046 3408 dbSNP
rs1413709311 3410 dbSNP
rs1275410065 3413 dbSNP
rs4515236 3416 dbSNP
rs1165722504 3417 dbSNP
rs1332029675 3424 dbSNP
rs1384897727 3426 dbSNP
rs1406277100 3429 dbSNP
rs1158290259 3439 dbSNP
rs1453355595 3443 dbSNP
rs184926217 3447 dbSNP
rs4616834 3451 dbSNP
rs938323899 3455 dbSNP
rs370866561 3460 dbSNP
rs1180046612 3466 dbSNP
rs570451939 3467 dbSNP
rs1271013750 3475 dbSNP
rs1344683243 3479 dbSNP
rs1452935018 3480 dbSNP
rs1281901312 3485 dbSNP
rs1199098083 3487 dbSNP
rs1354403993 3488 dbSNP
rs1311327303 3490 dbSNP
rs918371854 3493 dbSNP
rs1367019562 3495 dbSNP
rs990608821 3497 dbSNP
rs1438888466 3498 dbSNP
rs1343600870 3499 dbSNP
rs539206240 3502 dbSNP
rs1298038052 3509 dbSNP
rs1420692464 3511 dbSNP
rs1382744799 3518 dbSNP
rs1172293258 3520 dbSNP
rs1020374448 3533 dbSNP
rs369371286 3547 dbSNP
rs373944189 3549 dbSNP
rs1191210536 3552 dbSNP
rs1478839250 3553 dbSNP
rs569300524 3554 dbSNP
rs1215677173 3555 dbSNP
rs1488479729 3563 dbSNP
rs1049268589 3571 dbSNP
rs928819621 3595 dbSNP
rs537938616 3602 dbSNP
rs1484055495 3604 dbSNP
rs1007824193 3606 dbSNP
rs4607296 3608 dbSNP
rs4607297 3611 dbSNP
rs1221008204 3613 dbSNP
rs1360221616 3618 dbSNP
rs1277776017 3619 dbSNP
rs1401045594 3622 dbSNP
rs1246850609 3623 dbSNP
rs1311399051 3625 dbSNP
rs147485413 3629 dbSNP
rs991758866 3631 dbSNP
rs1415652014 3632 dbSNP
rs1219068933 3633 dbSNP
rs752495035 3648 dbSNP
rs1421084919 3652 dbSNP
rs997541635 3653 dbSNP
rs755865321 3658 dbSNP
rs777504653 3660 dbSNP
rs1477919221 3661 dbSNP
rs1265062097 3662 dbSNP
rs1373291152 3663 dbSNP
rs956185527 3664 dbSNP
rs1482921464 3667 dbSNP
rs1012073944 3669 dbSNP
rs367837104 3674 dbSNP
rs1047214206 3679 dbSNP
rs908283375 3685 dbSNP
rs1021462459 3696 dbSNP
rs943824249 3706 dbSNP
rs970265485 3710 dbSNP
rs764602361 3711 dbSNP
rs1380578005 3714 dbSNP
rs4504329 3721 dbSNP
rs1305086860 3723 dbSNP
rs980004602 3725 dbSNP
rs928577613 3745 dbSNP
rs1040842936 3748 dbSNP
rs574738737 3751 dbSNP
rs899699202 3758 dbSNP
rs370150447 3766 dbSNP
rs1425313539 3773 dbSNP
rs996692957 3793 dbSNP
rs770879394 3799 dbSNP
rs1053720015 3817 dbSNP
rs965789510 3818 dbSNP
rs1456355601 3820 dbSNP
rs1384009029 3829 dbSNP
rs959932629 3830 dbSNP
rs893091095 3832 dbSNP
rs1271471320 3833 dbSNP
rs753408205 3840 dbSNP
rs1244578488 3843 dbSNP
rs918244988 3845 dbSNP
rs931078833 3848 dbSNP
rs1020739061 3856 dbSNP
rs1319151687 3858 dbSNP
rs756775197 3868 dbSNP
rs540673727 3878 dbSNP
rs1376733162 3879 dbSNP
rs1330170625 3880 dbSNP
rs1330738402 3881 dbSNP
rs1286937926 3889 dbSNP
rs1446882296 3893 dbSNP
rs1048583773 3897 dbSNP
rs1402077254 3901 dbSNP
rs1285561346 3904 dbSNP
rs1457054978 3904 dbSNP
rs140020560 3914 dbSNP
rs57327893 3915 dbSNP
rs1039202843 3916 dbSNP
rs1437765459 3924 dbSNP
rs902126645 3927 dbSNP
rs1179379158 3940 dbSNP
rs143910950 3944 dbSNP
rs1459128657 3948 dbSNP
rs1265296467 3958 dbSNP
rs1228281116 3959 dbSNP
rs997762199 3961 dbSNP
rs1488889340 3962 dbSNP
rs1053167568 3964 dbSNP
rs891753550 3969 dbSNP
rs1238409475 3984 dbSNP
rs1353706959 3985 dbSNP
rs562954191 3988 dbSNP
rs958874988 3990 dbSNP
rs1240307418 3996 dbSNP
rs1378506306 4010 dbSNP
rs991706550 4012 dbSNP
rs1261886517 4014 dbSNP
rs1385880830 4017 dbSNP
rs1390935208 4019 dbSNP
rs189733946 4038 dbSNP
rs1022102580 4048 dbSNP
rs35071174 4060 dbSNP
rs1359876072 4065 dbSNP
rs145454567 4069 dbSNP
rs376829552 4069 dbSNP
rs970095647 4073 dbSNP
rs1375998622 4079 dbSNP
rs982459538 4083 dbSNP
rs371809025 4102 dbSNP
rs1434040479 4103 dbSNP
rs747517776 4105 dbSNP
rs183229712 4109 dbSNP
rs1488157956 4112 dbSNP
rs769295269 4120 dbSNP
rs1158256064 4122 dbSNP
rs972585074 4123 dbSNP
rs561866019 4130 dbSNP
rs774823508 4131 dbSNP
rs952454734 4132 dbSNP
rs932492676 4142 dbSNP
rs1231874398 4146 dbSNP
rs527280525 4146 dbSNP
rs546996942 4152 dbSNP
rs893716733 4154 dbSNP
rs910987264 4157 dbSNP
rs186491413 4158 dbSNP
rs557722317 4160 dbSNP
rs1041703342 4163 dbSNP
rs1421452341 4164 dbSNP
rs1399959580 4168 dbSNP
rs1189507944 4170 dbSNP
rs1390174355 4183 dbSNP
rs147305851 4190 dbSNP
rs923433572 4206 dbSNP
rs1305224108 4217 dbSNP
rs770007637 4224 dbSNP
rs1035784857 4232 dbSNP
rs1346493827 4233 dbSNP
rs1409619992 4234 dbSNP
rs1196228981 4237 dbSNP
rs1053747904 4241 dbSNP
rs891811146 4244 dbSNP
rs1269400340 4249 dbSNP
rs1240446049 4254 dbSNP
rs1199436390 4258 dbSNP
rs1345135844 4264 dbSNP
rs34185859 4266 dbSNP
rs773409883 4280 dbSNP
rs1260767906 4304 dbSNP
rs116236152 4309 dbSNP
rs1219735907 4312 dbSNP
rs1278665996 4314 dbSNP
rs1270611647 4317 dbSNP
rs1338667417 4322 dbSNP
rs952979402 4323 dbSNP
rs1490433428 4324 dbSNP
rs905989242 4329 dbSNP
rs983461887 4330 dbSNP
rs1465313608 4346 dbSNP
rs1001570735 4348 dbSNP
rs1420786176 4357 dbSNP
rs539891314 4368 dbSNP
rs895617189 4378 dbSNP
rs994110626 4380 dbSNP
rs1367928234 4384 dbSNP
rs1237213296 4388 dbSNP
rs1025959808 4400 dbSNP
rs1444568359 4411 dbSNP
rs976434948 4417 dbSNP
rs1165645917 4423 dbSNP
rs952642139 4432 dbSNP
rs984221891 4439 dbSNP
rs1216163202 4440 dbSNP
rs932441730 4441 dbSNP
rs989317070 4443 dbSNP
rs915084130 4444 dbSNP
rs1384833338 4446 dbSNP
rs1017946475 4447 dbSNP
rs774206150 4450 dbSNP
rs1296785900 4451 dbSNP
rs903150985 4473 dbSNP
rs1403775032 4481 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545217. RNA binding protein: AGO2. Condition:miR-7 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agGGUCCUUGGUACUAUAGUGu 5'
            | | | :|:|  ||||||| 
Target 5' ccCAAUGCGCUA-CAUAUCACu 3'
 		4 - 24
Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Disease 166929.0
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1065669. RNA binding protein: AGO1. Condition:4-thiouridine ...

- Memczak S; Jens M; Elefsinioti A; Torti F; et al., 2013, Nature.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agGGUCCUUGGUACUAUAGUGu 5'
            | | | :|:|  ||||||| 
Target 5' ccCAAUGCGCUA-CAUAUCACu 3'
 		4 - 24
Article - Memczak S; Jens M; Elefsinioti A; Torti F; et al.
- Nature, 2013
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
LinkOut: [PMID: 23446348]
CLIP-seq Support 1 for dataset GSM545217
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-7 transfection
Location of target site ENST00000394684.4 | 3UTR | CCACCCAAUGCGCUACAUAUCACUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1065669
Method / RBP PAR-CLIP / AGO1
Cell line / Condition HEK293 / 4-thiouridine, ML_MM_8
Location of target site ENST00000394684.4 | 3UTR | CCACCCAAUGCGCUACAUAUCACUUUUUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23446348 / GSE43573
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
45 hsa-miR-3689e Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT112233 MDM4 MDM4, p53 regulator 2 2
MIRT188658 FAM76A family with sequence similarity 76 member A 2 2
MIRT200913 ZNF264 zinc finger protein 264 2 4
MIRT210597 KBTBD8 kelch repeat and BTB domain containing 8 2 6
MIRT299209 CSRNP3 cysteine and serine rich nuclear protein 3 2 2
MIRT317526 SLC39A7 solute carrier family 39 member 7 2 2
MIRT355852 SGMS2 sphingomyelin synthase 2 2 4
MIRT443050 THRB thyroid hormone receptor beta 2 2
MIRT446629 SDC3 syndecan 3 2 2
MIRT449407 TRIM5 tripartite motif containing 5 2 2
MIRT463559 ZBTB39 zinc finger and BTB domain containing 39 2 6
MIRT465701 TNFAIP1 TNF alpha induced protein 1 2 2
MIRT472686 MYCBP MYC binding protein 2 4
MIRT493285 LNPEP leucyl and cystinyl aminopeptidase 2 2
MIRT499336 RAB25 RAB25, member RAS oncogene family 2 2
MIRT501721 OVOL1 ovo like transcriptional repressor 1 2 2
MIRT507975 BCL2L13 BCL2 like 13 2 4
MIRT511809 HDGF heparin binding growth factor 2 6
MIRT516709 PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma 2 4
MIRT527851 SMOC1 SPARC related modular calcium binding 1 2 2
MIRT531284 SLC7A7 solute carrier family 7 member 7 2 2
MIRT531892 INVS inversin 2 8
MIRT536805 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT537805 EFNB2 ephrin B2 2 4
MIRT544333 LPGAT1 lysophosphatidylglycerol acyltransferase 1 2 2
MIRT547140 PGM3 phosphoglucomutase 3 2 2
MIRT547427 MED4 mediator complex subunit 4 2 2
MIRT563352 ZNF181 zinc finger protein 181 2 2
MIRT564847 ZBED3 zinc finger BED-type containing 3 2 2
MIRT566424 PIGA phosphatidylinositol glycan anchor biosynthesis class A 2 2
MIRT572510 KIAA0232 KIAA0232 2 2
MIRT574680 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT608818 ONECUT3 one cut homeobox 3 2 6
MIRT608884 CLIC6 chloride intracellular channel 6 2 2
MIRT608957 GIMAP1 GTPase, IMAP family member 1 2 4
MIRT609010 HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 2 2
MIRT641429 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT661839 ZNF587B zinc finger protein 587B 2 2
MIRT690649 RPF2 ribosome production factor 2 homolog 2 2
MIRT704617 CLIP1 CAP-Gly domain containing linker protein 1 2 2
MIRT708712 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT710661 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 2
MIRT711258 TPCN2 two pore segment channel 2 2 2
MIRT714647 FSTL1 follistatin like 1 2 2
MIRT718516 COL19A1 collagen type XIX alpha 1 chain 2 2

Error report submission