pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol MAP1B   
Synonyms FUTSCH, MAP5, PPP1R102
Description microtubule associated protein 1B
Transcript NM_005909   
Expression
Putative miRNA Targets on MAP1B
3'UTR of MAP1B
(miRNA target sites are highlighted)
>MAP1B|NM_005909|3'UTR
   1 AAACCAAGGCCAGCCACACCACAGGATCTGAACTTTGTTTCCAGAAATTCTTCAATTTGAAATCACCTTTTCTAAAAAGT
  81 CAATTCATCTAGTTAAGTCGCTGAACAATTACCTGCCAAATGCTATACTGTGTCATGGTGATGCAAGTCACTAAATTTCT
 161 CAGTTTTTGCTGATTGCTAAGGGAAATAACAGTATTTCCACAATAGGGTTCAAATTCCTGCAAAATTACCTACCCCAGTT
 241 CATCTCTGCTGAACATTTGGAAACCATGCACTAGCCAACCCAACTGACTTCTGCTAGGTAGAGGCATTTGTCTTAGAGAG
 321 AGAGAGAGCGCGGGAGAGAGTGAGAGAGAGTGAGAGCACAAAGATAACGCAGGAGAGAGAGAGAGAAAGAATGAGAAAGA
 401 AAAGGAATGCAAGAGAAGGAGATGTAATGACAGAGAGTTCTGGTGAGATACCCAGAGAGAAAAAGAGAGAGCAGGGTGGG
 481 GTAAGGAGGAGAAAATAAACCAACAATTAGGTCTGCATTTTCTCAGGCAGTAGGCATTCTTTAGTCTACATAGGCAAAGT
 561 TTTCCATTTTTGTCAGTCTGAGTCATCAAAAAGAGTCTTAATTTTCTAAAACAAGTTGGCTAGAAGAAAGTAAAAAGAAC
 641 AACACTTGTTATGAGGGCATGTGATATTTTCACATCTTAATTAAGCTCCTTCAGTTTGAAGGCTGCACACTGACATAATG
 721 TAGTGAGTGTAGACTGGCCATGCAAGTGGTTTGGGCCCCATTCAGAACTCTCAGACTCTAAACACACAAGTAGATTGATC
 801 TAAGGCATGCTCCCAGCATTTGTCCACCCACTTAGTCCACTCTGAGTCGATTAACCTGCATGCAGCAACACCCAAGTCCA
 881 CCCCAATTAACTGAAGCAAATACCAAAGCAGTTGGGAGTACATATGGTAGACAATTTGCCTTAGGAAGTGACTTGAATGT
 961 ACAAAGATACTTGATGCACTTATTTTTTAATGTGAGACAGCAAGTTTATAAAACATCCATATAGGATTATAGATACTTAA
1041 AGGAACACGTGGGTGAGCGTGTGTGGGGGTACTAGAAGCTGATCTGATTGGTCCAACAGTTTGATGCTGAGTCATGCGTG
1121 TTGAATCCCACTTCAGTGCACCTGTGGCCTCTCAGTCAAACAAGTTGTGCCTTTCACAGCTTCTTTACTACTGCAAGTTC
1201 AAGACTGAAATGGCTTCTATGATCAGAACTGGGAAAACAGTGAATCTTATGGTGGAAGAGGTTCTCAGCAAGTGTACAGT
1281 ATTTACCTTCCTTTGTCTTACATTGGCTTTTTAAATTTTCCATTAATTTCAACATAATTATGGGAACAAGTGTACAGAAG
1361 AATTTTTTTTTTAAGATATGTGAGAACTTTTCATAGATGAACTTTTTAACAAATGTTTTCATTTACAGGAAATTGCAAAG
1441 AAAATTCTCAAGTGATAGTCTTTTTTTTTAAGTGTTTCGTAAGACAAAAATTGAATAATGTTTTTTGAAGTTCTGGCAAG
1521 ATTGAAGTCTGATATTGCAGTAATGATATTTATTAAAAACCCATAACTACCAGGAATAATGATACCTCCCACCCCTTGAT
1601 TCCCATAACATAAAAGTGCTACTTGAGAGTGGGGGAGAATGGCATGGTAGGCTACTTTTCAGGGCCTTGACAAGTACATC
1681 ACCCAGTGGTATCCTACATACTTCTTTCAAGATCTTCAACCATGAGGTAAAAGAGCCAAGTTCAAAGAACCCTAGCACAA
1761 ATTTGCTTTGGGATTTTCTTTTCTGGAAAAAAAAAATAAAAGAAATAGTACATTGAAAACAAATGAATTCTCAACTCCTA
1841 CGGTTCATGTAGAGTTTAGAGAAAATTTCCATCATTGTCATCATTGAACTGTGAACCTGGGAAGCCAGATCATGATTAAC
1921 ACTGACATCAAGTTTCAAGTTGCAGATCAATGCACCCAGTGTTCAGATGAGGCAAACTTCTCCGTGACAACTGTGCTGTG
2001 CTCTGTCACATTACATTTCCTGCAGACTCTAAGATCTACGGAGTAGAGAACAATGACCTCATTTTATTTTCTATGTTAGT
2081 TATTTATTTCAAAATTAACATTTTAGTTGATTTTTGTCTGATAAGTCTATGTTTTGCACTGCTAACTATGATGAGGGTTT
2161 AAAAAAATGCTTCTTCAGGGTCCTTTCACTGAGGACCTATGCAGTCTACTTAATGCTGTGAATTACATTTTTCAAATGTT
2241 TAATTTTTTAAAGAAAATTAATATTCTATTTTTGTTAGGCTTCTCTAGAAATGCAGCTTTTATTTATTACCCCATTTCTT
2321 TCAAGTCCTTGGAAAATAACATATTAAGGGTACAAGAAATTAACACATGATGGAAAAGTCATTGTGACGCCAATGAATTT
2401 CATTGAGTATAAACTCATCTACTTCAAATTTATTTTATAACACAACCTAAGATACTCAAGATAATTATTTAATGGTTAGC
2481 TCTTAAGTTGAATTGGTCTACATAATGCGTGGGAAGAAAACCAGATTTTTAGCCTTCTTGCCAAATCCAGACCTCTGGTT
2561 GATTTTTCTTTGACAGAAGATGCAAGTTATTTTCCAATTTCACAATTAAATGTATTTAACCTGAACATTATTTTGCTTTA
2641 AAAACTATAAACATTGTAGGAGAATTATAGCCAGTCTTCAGTTATAACCACTCCACCCTCCTCACTTTCTCTCTCTCTCT
2721 CTCTTTTTTTTTTTTTTTTTTTTTGCTATGGGATTTAATGGGAAAAATATGTAAAAACTGTCACTAGTCAGCTGGCTCTT
2801 TTTCCTATGAAATCTATCAGTACCTTTCTCCATCCGTTGTTCTCAATATGACCACAGAGCCTGAGTATACCAAGAAAACC
2881 AATATTCGCATTACAGGTTGCTCCTGTCCTTCCAGACACCTTTCCTGCCTGTGTGACTAACCTAATTTTGCTAGTTCCAT
2961 AAATACACGATTAGTTTAGTAACAGCCATCACAATGTACCATGTACATTCATGGTGAGAGCTAAAGATCGACACAGACTT
3041 CTAGGAGCTTTGTTCATACTGATTACTTAATCCAATTGTATAGATTGAATATTTGAGTGGAAGGAATTTACACTCTGTTT
3121 AAATGATGGGATTCTATCGAGATAGCACTCATGATCATGACCTTTTTGGTAGTATTCTTAAACAAAATTCTACAGAGACT
3201 AAATGTTAGCGATGATCCTCCATTTTCAATTTTAACCAATTCTGTCCCCTTTCTCAAAACCCTGAGCCCTGTGCATGCTT
3281 TCTCAGTCTTGTGGTGGGACTGGATACAATGACTAACTTCCCCTCCTCCCCTCTTTAAACACCATTTTCCATGGAGTTCA
3361 AAAAAATTTTTTTTCTTAACGTTACATATCATAGTGAATGGTTTCCCCAGTGTATATGAATGTTTTAAGTGTCTCCAATA
3441 GCTTATGCAGTCTAGGAGCTTTCCAATACTCATTTAATTAAGATTTAATCATTTGCTAATGGAAATCTTACCACCTTTCA
3521 TTTTCCCTCTGTTACCAAATTTCAGCTCTTAGGAGCTGCTCTACAATTCTGAATTTGCTTTTCTTGCCTCTCTTTAGTCA
3601 CCTGTCACAGGAGGTTCCTGCTCAGTAATGATATTGTGAGTTAGGATAATAACTTTTTTTTTTTGTGCTTCAGATTTAGA
3681 AGAAAAGATCCTGTTTCCATTTGAAAGGAACTGTAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCT
3761 AGGGATGAGCATTTCTTTGAAAGCAATTAGGTTATTCACCTGGTATTAAAACTATTTACTGTTAAAAAATCTGTGACTTC
3841 ATGAAGTTGATTTTTAAAGGCAGCATCAAAAACTGAAAAGGAAGGGAAAAAATAGGCAGCTTCTCTGCACTTGTTTGGAG
3921 CTCCCCAAAACAGGAGCCATGGAGAAGTGGCATCAAGACCGGGCTGCCCTTTCGAGAACACCCTGTGGCAGTTCAGAGAC
4001 ACGCTTTTCCTACACTGCATGCAGCCCCTCTTTCCAGCACTGGAAAGAAGTGGTCTTGAGCCCAGCTGAGAAGCACTTCA
4081 CACTCCTCTCTCTTGTTCTGAATGGTGTTTGTGTCAGTCTGCAGCTGTGTATGGTATTATGTCTTATAATCCTGCATCAC
4161 TTCTATCCTATCCAGTCATATCTAATGTAGAAAATTAGTTTCCAGTGAAAGTAATATGTAGTGCTTTTATGATATTTGTG
4241 TGCAATATCCCCTCTTCCATTGAGGATATTTGATGTAAAGGAAAAAAAAAAACTCAGTTCCACAATAAAATACAAAAGTG
4321 GCAAAAGTTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggACCU-ACG----UUUAAAAu 5'
             |||| | |    ||||||| 
Target 5' ccaTGGAGTTCAAAAAAATTTTt 3'
3349 - 3371 145.00 -5.90
2
miRNA  3' aggaCCUAC-----GUUUAAAAu 5'
              ||| |     ||:||||| 
Target 5' cgtgGGAAGAAAACCAGATTTTt 3'
2508 - 2530 130.00 -5.40
3
miRNA  3' agGACCUACGUUUAAAau 5'
            |||    |||||||  
Target 5' ctCTGTTACCAAATTTca 3'
3527 - 3544 128.00 -5.30
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30178295 15 COSMIC
COSN31564772 44 COSMIC
COSN31582990 56 COSMIC
COSN31528969 91 COSMIC
COSN18723948 101 COSMIC
COSN30519823 151 COSMIC
COSN31574592 165 COSMIC
COSN30163500 245 COSMIC
COSN31480815 247 COSMIC
COSN30175265 273 COSMIC
COSN30539731 332 COSMIC
COSN24951323 585 COSMIC
COSN31524597 817 COSMIC
COSN26549991 823 COSMIC
COSN31608015 850 COSMIC
COSN26552604 1082 COSMIC
COSN26636799 1170 COSMIC
COSN26566045 1275 COSMIC
COSN7952139 1404 COSMIC
COSN20101353 1470 COSMIC
COSN7952140 1470 COSMIC
COSN32063674 1480 COSMIC
COSN2116280 1641 COSMIC
COSN16000682 1789 COSMIC
COSN2116281 1800 COSMIC
COSN29130273 1826 COSMIC
COSN32057333 2234 COSMIC
COSN15156056 2294 COSMIC
COSN18764146 2725 COSMIC
COSN31959952 2837 COSMIC
COSN20101354 2849 COSMIC
COSN15739099 3514 COSMIC
COSN32057214 3626 COSMIC
COSN27220266 3665 COSMIC
COSN21204033 3698 COSMIC
COSN31959953 3766 COSMIC
COSN2116282 3881 COSMIC
COSN24945971 3980 COSMIC
COSN24625921 4023 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1338357445 2 dbSNP
rs766846125 4 dbSNP
rs754339749 5 dbSNP
rs1489830178 7 dbSNP
rs759602491 10 dbSNP
rs1267997123 11 dbSNP
rs868497640 21 dbSNP
rs765242089 22 dbSNP
rs1170975673 26 dbSNP
rs1190777584 28 dbSNP
rs752921527 31 dbSNP
rs758577054 42 dbSNP
rs1169267579 44 dbSNP
rs1430268542 62 dbSNP
rs907893846 66 dbSNP
rs1057441356 67 dbSNP
rs1180241365 82 dbSNP
rs1461011383 86 dbSNP
rs1244042684 100 dbSNP
rs750262423 101 dbSNP
rs1216150042 102 dbSNP
rs1228747551 110 dbSNP
rs1309810130 120 dbSNP
rs368723994 123 dbSNP
rs1012993902 126 dbSNP
rs1227282644 129 dbSNP
rs1383066674 135 dbSNP
rs555860547 158 dbSNP
rs574057609 160 dbSNP
rs1444127321 161 dbSNP
rs1399223327 164 dbSNP
rs996655666 172 dbSNP
rs541500425 176 dbSNP
rs750038401 182 dbSNP
rs1366684234 200 dbSNP
rs888552337 209 dbSNP
rs1004751911 210 dbSNP
rs180905374 217 dbSNP
rs966008013 234 dbSNP
rs1011515377 242 dbSNP
rs1385954139 243 dbSNP
rs1185584779 245 dbSNP
rs1478292979 246 dbSNP
rs1456637547 256 dbSNP
rs1250202035 258 dbSNP
rs977053980 267 dbSNP
rs1029937903 270 dbSNP
rs561209065 280 dbSNP
rs1359464951 293 dbSNP
rs1316573606 295 dbSNP
rs758258232 303 dbSNP
rs779537912 309 dbSNP
rs1002580909 315 dbSNP
rs1375755182 315 dbSNP
rs967270112 315 dbSNP
rs1035347652 317 dbSNP
rs1382121873 319 dbSNP
rs914283473 323 dbSNP
rs563075291 326 dbSNP
rs1425225847 328 dbSNP
rs373838750 330 dbSNP
rs947164630 331 dbSNP
rs753263023 332 dbSNP
rs75893221 333 dbSNP
rs1182976585 334 dbSNP
rs778663712 334 dbSNP
rs748412266 338 dbSNP
rs1330924457 342 dbSNP
rs1490661971 342 dbSNP
rs1234581419 345 dbSNP
rs1213872252 358 dbSNP
rs1277180592 365 dbSNP
rs1261007902 367 dbSNP
rs546118431 369 dbSNP
rs1329069798 370 dbSNP
rs1300371976 373 dbSNP
rs1347375047 373 dbSNP
rs984910436 373 dbSNP
rs185760247 374 dbSNP
rs1057078760 385 dbSNP
rs1305001296 388 dbSNP
rs1418018046 389 dbSNP
rs908156830 390 dbSNP
rs1159308420 397 dbSNP
rs1286846009 406 dbSNP
rs915843620 409 dbSNP
rs141173288 430 dbSNP
rs867718651 436 dbSNP
rs1048430758 438 dbSNP
rs976087760 450 dbSNP
rs888500288 459 dbSNP
rs1004335930 460 dbSNP
rs530427942 462 dbSNP
rs572536823 464 dbSNP
rs1206484450 473 dbSNP
rs530759258 477 dbSNP
rs778240747 482 dbSNP
rs1050914014 494 dbSNP
rs901368281 501 dbSNP
rs1276296404 507 dbSNP
rs998772542 514 dbSNP
rs548894435 517 dbSNP
rs1028506472 523 dbSNP
rs1452022767 525 dbSNP
rs1319087815 534 dbSNP
rs954297889 537 dbSNP
rs1400380760 543 dbSNP
rs1200909376 545 dbSNP
rs531000202 552 dbSNP
rs1439017037 554 dbSNP
rs374340651 555 dbSNP
rs544683761 557 dbSNP
rs1169080211 573 dbSNP
rs1158667046 577 dbSNP
rs1381656095 581 dbSNP
rs562980139 582 dbSNP
rs1422324462 583 dbSNP
rs1162337797 591 dbSNP
rs749646473 593 dbSNP
rs1242143413 596 dbSNP
rs1194762950 598 dbSNP
rs1390454075 600 dbSNP
rs1387781468 610 dbSNP
rs1325953274 617 dbSNP
rs1204049612 621 dbSNP
rs1462445507 622 dbSNP
rs1255928269 625 dbSNP
rs1021279501 634 dbSNP
rs1213882414 638 dbSNP
rs1041571889 640 dbSNP
rs968869126 641 dbSNP
rs977222629 647 dbSNP
rs1229788418 650 dbSNP
rs190998859 653 dbSNP
rs1453661925 654 dbSNP
rs1446725775 655 dbSNP
rs959871651 663 dbSNP
rs1420900755 665 dbSNP
rs992679683 674 dbSNP
rs1169140335 677 dbSNP
rs915794456 683 dbSNP
rs1035364925 699 dbSNP
rs1183755319 715 dbSNP
rs377490491 716 dbSNP
rs1446117328 720 dbSNP
rs1236109861 730 dbSNP
rs150797795 741 dbSNP
rs1438316688 743 dbSNP
rs1012681130 747 dbSNP
rs566900892 750 dbSNP
rs370977222 762 dbSNP
rs1208003036 765 dbSNP
rs1027179167 773 dbSNP
rs779006977 775 dbSNP
rs746081672 781 dbSNP
rs1314495614 785 dbSNP
rs1211353090 787 dbSNP
rs1385325725 792 dbSNP
rs772335490 798 dbSNP
rs775685959 806 dbSNP
rs1179218564 808 dbSNP
rs746981659 815 dbSNP
rs768504408 832 dbSNP
rs1423301163 834 dbSNP
rs901270286 838 dbSNP
rs527965953 840 dbSNP
rs1049892622 849 dbSNP
rs1442307211 850 dbSNP
rs932006373 853 dbSNP
rs986132753 858 dbSNP
rs890028945 859 dbSNP
rs1176394369 863 dbSNP
rs1470354420 870 dbSNP
rs1011151904 873 dbSNP
rs914682978 884 dbSNP
rs1196613479 897 dbSNP
rs552863206 912 dbSNP
rs182267638 913 dbSNP
rs1223377195 919 dbSNP
rs968443030 925 dbSNP
rs998941148 926 dbSNP
rs1223443137 931 dbSNP
rs1031396485 941 dbSNP
rs1281677755 944 dbSNP
rs938598397 949 dbSNP
rs1345494519 955 dbSNP
rs1303222563 962 dbSNP
rs1426066122 965 dbSNP
rs1342935584 970 dbSNP
rs1157828657 982 dbSNP
rs960063715 989 dbSNP
rs1057407007 997 dbSNP
rs1170643523 1004 dbSNP
rs992629150 1004 dbSNP
rs1480052805 1010 dbSNP
rs915783036 1012 dbSNP
rs1269606355 1016 dbSNP
rs1200217301 1026 dbSNP
rs1490844666 1031 dbSNP
rs538062196 1037 dbSNP
rs1215286280 1038 dbSNP
rs201680197 1044 dbSNP
rs754997593 1049 dbSNP
rs112742907 1050 dbSNP
rs1323432222 1053 dbSNP
rs567815513 1060 dbSNP
rs1407297730 1062 dbSNP
rs1048056261 1066 dbSNP
rs888229059 1069 dbSNP
rs940010969 1072 dbSNP
rs1003883055 1073 dbSNP
rs1173984496 1076 dbSNP
rs973144452 1097 dbSNP
rs1469155540 1114 dbSNP
rs1312110979 1118 dbSNP
rs867918455 1119 dbSNP
rs1429753718 1121 dbSNP
rs1015046769 1126 dbSNP
rs1426698460 1135 dbSNP
rs922677672 1137 dbSNP
rs145874278 1149 dbSNP
rs369374867 1149 dbSNP
rs934110398 1162 dbSNP
rs765018179 1168 dbSNP
rs11546547 1172 dbSNP
rs889974360 1173 dbSNP
rs1244110875 1188 dbSNP
rs1202019409 1193 dbSNP
rs1461095721 1194 dbSNP
rs997683618 1195 dbSNP
rs772809887 1225 dbSNP
rs1031027607 1230 dbSNP
rs1317118716 1231 dbSNP
rs1294195965 1235 dbSNP
rs953653186 1239 dbSNP
rs1363621998 1241 dbSNP
rs528108810 1247 dbSNP
rs535219763 1250 dbSNP
rs1451469304 1255 dbSNP
rs914545468 1256 dbSNP
rs1459932526 1259 dbSNP
rs1180716597 1262 dbSNP
rs552781794 1279 dbSNP
rs1353903338 1292 dbSNP
rs553342033 1303 dbSNP
rs1256271582 1304 dbSNP
rs1425145226 1334 dbSNP
rs1429134673 1335 dbSNP
rs968793487 1339 dbSNP
rs1181932464 1341 dbSNP
rs1444260311 1342 dbSNP
rs998493633 1352 dbSNP
rs977479857 1355 dbSNP
rs190596456 1361 dbSNP
rs551479407 1363 dbSNP
rs895560550 1363 dbSNP
rs938524078 1363 dbSNP
rs78338175 1364 dbSNP
rs1312317890 1366 dbSNP
rs1014054472 1370 dbSNP
rs1244731124 1376 dbSNP
rs915852823 1379 dbSNP
rs1316855580 1380 dbSNP
rs948656350 1384 dbSNP
rs545755839 1386 dbSNP
rs1022788205 1388 dbSNP
rs1403012379 1395 dbSNP
rs182765437 1398 dbSNP
rs983972150 1400 dbSNP
rs1016810530 1411 dbSNP
rs1161806059 1424 dbSNP
rs1424221447 1448 dbSNP
rs576117986 1453 dbSNP
rs1417645107 1461 dbSNP
rs142725688 1461 dbSNP
rs397941318 1461 dbSNP
rs1250264778 1470 dbSNP
rs900914666 1470 dbSNP
rs1403047750 1471 dbSNP
rs1397980804 1472 dbSNP
rs998134723 1473 dbSNP
rs1339593923 1475 dbSNP
rs12108730 1479 dbSNP
rs187047295 1480 dbSNP
rs1310321287 1482 dbSNP
rs74924077 1485 dbSNP
rs754445550 1488 dbSNP
rs189926085 1492 dbSNP
rs778302889 1497 dbSNP
rs1483976558 1499 dbSNP
rs1021654788 1500 dbSNP
rs556045668 1501 dbSNP
rs985537207 1504 dbSNP
rs1301366988 1512 dbSNP
rs1261931527 1514 dbSNP
rs1477950762 1517 dbSNP
rs1194778912 1522 dbSNP
rs977407706 1523 dbSNP
rs911321206 1533 dbSNP
rs1165153187 1534 dbSNP
rs1431909539 1543 dbSNP
rs924713699 1546 dbSNP
rs560267156 1553 dbSNP
rs527708657 1554 dbSNP
rs542117782 1555 dbSNP
rs182519285 1564 dbSNP
rs915710202 1565 dbSNP
rs1202947936 1567 dbSNP
rs948645728 1571 dbSNP
rs1296427859 1580 dbSNP
rs1360073937 1583 dbSNP
rs1400869602 1595 dbSNP
rs35335401 1602 dbSNP
rs1048282057 1604 dbSNP
rs909563578 1606 dbSNP
rs1405488438 1607 dbSNP
rs1299766846 1619 dbSNP
rs1325636098 1620 dbSNP
rs1365278319 1622 dbSNP
rs571131407 1630 dbSNP
rs902733284 1632 dbSNP
rs1427639917 1634 dbSNP
rs1301967960 1641 dbSNP
rs900966946 1643 dbSNP
rs935617873 1646 dbSNP
rs1190446068 1652 dbSNP
rs1052785790 1656 dbSNP
rs1446059247 1667 dbSNP
rs895508602 1677 dbSNP
rs1013941125 1687 dbSNP
rs1284713484 1694 dbSNP
rs1022696702 1696 dbSNP
rs1262311003 1706 dbSNP
rs905611187 1725 dbSNP
rs1223990641 1739 dbSNP
rs1347100865 1748 dbSNP
rs531741151 1751 dbSNP
rs1218383604 1757 dbSNP
rs1265762408 1762 dbSNP
rs889267426 1770 dbSNP
rs1005354154 1772 dbSNP
rs536544632 1775 dbSNP
rs1296496058 1776 dbSNP
rs1008239226 1787 dbSNP
rs142009623 1787 dbSNP
rs1437584828 1787 dbSNP
rs1191115203 1793 dbSNP
rs1405064806 1794 dbSNP
rs549956179 1798 dbSNP
rs904757155 1807 dbSNP
rs998894878 1812 dbSNP
rs568356896 1813 dbSNP
rs754304848 1818 dbSNP
rs1442422914 1831 dbSNP
rs1268591440 1837 dbSNP
rs1435441130 1842 dbSNP
rs377560233 1843 dbSNP
rs961315708 1848 dbSNP
rs1270873265 1859 dbSNP
rs1195174780 1860 dbSNP
rs553858186 1875 dbSNP
rs1298446697 1876 dbSNP
rs1420504838 1877 dbSNP
rs1031669309 1892 dbSNP
rs565507192 1893 dbSNP
rs960406613 1932 dbSNP
rs539428554 1947 dbSNP
rs1342649964 1976 dbSNP
rs992885838 1978 dbSNP
rs955347772 1984 dbSNP
rs985445578 1985 dbSNP
rs911266878 1991 dbSNP
rs1396531382 1994 dbSNP
rs1169994463 1997 dbSNP
rs968112177 2016 dbSNP
rs1384301257 2030 dbSNP
rs1183958434 2040 dbSNP
rs969887068 2041 dbSNP
rs1230970280 2042 dbSNP
rs1369579952 2056 dbSNP
rs1438370701 2073 dbSNP
rs979619514 2074 dbSNP
rs1444512399 2075 dbSNP
rs983904087 2076 dbSNP
rs1291238274 2080 dbSNP
rs1229105436 2094 dbSNP
rs1358863350 2105 dbSNP
rs924146154 2107 dbSNP
rs557721193 2119 dbSNP
rs1278168323 2120 dbSNP
rs1307854010 2123 dbSNP
rs113449105 2128 dbSNP
rs376685295 2128 dbSNP
rs1241848585 2132 dbSNP
rs935580896 2137 dbSNP
rs1309315028 2138 dbSNP
rs1402624937 2139 dbSNP
rs187732419 2140 dbSNP
rs537387294 2147 dbSNP
rs555587819 2154 dbSNP
rs1406757319 2157 dbSNP
rs1221225360 2158 dbSNP
rs1247683114 2159 dbSNP
rs1470193392 2162 dbSNP
rs1253961125 2170 dbSNP
rs1177359536 2181 dbSNP
rs1237617902 2191 dbSNP
rs949659613 2192 dbSNP
rs939933728 2193 dbSNP
rs867979817 2203 dbSNP
rs199618434 2204 dbSNP
rs905601268 2205 dbSNP
rs922234122 2208 dbSNP
rs933754627 2214 dbSNP
rs1282561585 2215 dbSNP
rs1005752325 2225 dbSNP
rs1330415184 2258 dbSNP
rs1038187028 2263 dbSNP
rs1336325638 2271 dbSNP
rs889521490 2289 dbSNP
rs1344283126 2299 dbSNP
rs897007182 2312 dbSNP
rs1293653190 2313 dbSNP
rs1438125581 2317 dbSNP
rs1421590228 2324 dbSNP
rs943574205 2328 dbSNP
rs1317354740 2332 dbSNP
rs573911337 2341 dbSNP
rs994027569 2345 dbSNP
rs139416035 2350 dbSNP
rs1480082446 2351 dbSNP
rs955295880 2353 dbSNP
rs904809438 2354 dbSNP
rs1489587235 2357 dbSNP
rs192664890 2366 dbSNP
rs1463976484 2388 dbSNP
rs1018267112 2389 dbSNP
rs895790285 2390 dbSNP
rs572307662 2394 dbSNP
rs1014766595 2403 dbSNP
rs1202302818 2404 dbSNP
rs1323495631 2406 dbSNP
rs1301352908 2408 dbSNP
rs1376985075 2424 dbSNP
rs1220508662 2426 dbSNP
rs1359270078 2426 dbSNP
rs1269155296 2429 dbSNP
rs1435401793 2431 dbSNP
rs1448262237 2440 dbSNP
rs10036291 2442 dbSNP
rs1469201281 2464 dbSNP
rs1359740732 2475 dbSNP
rs979949982 2484 dbSNP
rs970546745 2486 dbSNP
rs1377933014 2488 dbSNP
rs1417471463 2492 dbSNP
rs760392345 2494 dbSNP
rs1016692162 2509 dbSNP
rs768217008 2510 dbSNP
rs1197289060 2523 dbSNP
rs1461251038 2527 dbSNP
rs1258056102 2534 dbSNP
rs1257038235 2535 dbSNP
rs992340711 2555 dbSNP
rs564368701 2560 dbSNP
rs922273977 2569 dbSNP
rs538683082 2571 dbSNP
rs948316201 2574 dbSNP
rs1228653927 2576 dbSNP
rs985513585 2588 dbSNP
rs1044082127 2589 dbSNP
rs926969553 2598 dbSNP
rs1379643111 2599 dbSNP
rs531874696 2607 dbSNP
rs930391 2622 dbSNP
rs1038498197 2624 dbSNP
rs1168078059 2629 dbSNP
rs1430635632 2632 dbSNP
rs1392318048 2640 dbSNP
rs1415675507 2641 dbSNP
rs946440133 2643 dbSNP
rs1043255473 2653 dbSNP
rs926071638 2654 dbSNP
rs561924090 2655 dbSNP
rs1169697947 2658 dbSNP
rs529466056 2676 dbSNP
rs1479972233 2680 dbSNP
rs1250386521 2686 dbSNP
rs1400872990 2690 dbSNP
rs1205334909 2696 dbSNP
rs1289068906 2708 dbSNP
rs1313548234 2708 dbSNP
rs1314642936 2708 dbSNP
rs201027127 2708 dbSNP
rs934916363 2708 dbSNP
rs896921702 2712 dbSNP
rs994369024 2717 dbSNP
rs1307481086 2719 dbSNP
rs1410447781 2719 dbSNP
rs1161859480 2720 dbSNP
rs1167401490 2720 dbSNP
rs1369388566 2720 dbSNP
rs1372488232 2720 dbSNP
rs1457613838 2720 dbSNP
rs750942581 2720 dbSNP
rs759615463 2720 dbSNP
rs775799329 2721 dbSNP
rs1183555206 2722 dbSNP
rs1208824537 2722 dbSNP
rs1266193307 2722 dbSNP
rs1356387562 2722 dbSNP
rs867338067 2722 dbSNP
rs1488633441 2723 dbSNP
rs1160489556 2724 dbSNP
rs1266980849 2724 dbSNP
rs1288829625 2724 dbSNP
rs1295646914 2724 dbSNP
rs1301425944 2724 dbSNP
rs1352358891 2724 dbSNP
rs1386396445 2724 dbSNP
rs1391812903 2724 dbSNP
rs1411703199 2724 dbSNP
rs1451992494 2724 dbSNP
rs1491202745 2724 dbSNP
rs564543921 2724 dbSNP
rs765982531 2724 dbSNP
rs767309478 2724 dbSNP
rs868341049 2724 dbSNP
rs1491104343 2725 dbSNP
rs113587055 2726 dbSNP
rs891034492 2727 dbSNP
rs113145780 2728 dbSNP
rs1448271742 2730 dbSNP
rs1285653971 2731 dbSNP
rs1357756231 2732 dbSNP
rs1217115491 2733 dbSNP
rs1277987784 2735 dbSNP
rs369783965 2736 dbSNP
rs1319162152 2737 dbSNP
rs1006804082 2738 dbSNP
rs1331759123 2740 dbSNP
rs1303601953 2744 dbSNP
rs1282877381 2745 dbSNP
rs1380764359 2745 dbSNP
rs963492975 2746 dbSNP
rs1211757907 2747 dbSNP
rs1487192064 2747 dbSNP
rs1276563602 2748 dbSNP
rs1002062025 2749 dbSNP
rs1443770396 2750 dbSNP
rs896042377 2750 dbSNP
rs1211077935 2751 dbSNP
rs1259788926 2752 dbSNP
rs1487437610 2753 dbSNP
rs1192611092 2754 dbSNP
rs1466056703 2758 dbSNP
rs1424116163 2760 dbSNP
rs1476336125 2763 dbSNP
rs1014278394 2792 dbSNP
rs1248387549 2798 dbSNP
rs1423840005 2799 dbSNP
rs1277748010 2808 dbSNP
rs1200975366 2817 dbSNP
rs1414609178 2821 dbSNP
rs1257864490 2823 dbSNP
rs1335629861 2825 dbSNP
rs1226413959 2832 dbSNP
rs1018214860 2836 dbSNP
rs968483185 2837 dbSNP
rs1000888216 2839 dbSNP
rs547137497 2840 dbSNP
rs565771904 2847 dbSNP
rs11437861 2848 dbSNP
rs386404073 2848 dbSNP
rs869218681 2850 dbSNP
rs1403684625 2853 dbSNP
rs1165703299 2863 dbSNP
rs1428691537 2864 dbSNP
rs1341574887 2865 dbSNP
rs1170099376 2870 dbSNP
rs1442486089 2872 dbSNP
rs1236702428 2886 dbSNP
rs544354496 2888 dbSNP
rs867127964 2889 dbSNP
rs992317435 2893 dbSNP
rs1344925700 2901 dbSNP
rs1219824684 2913 dbSNP
rs961166195 2915 dbSNP
rs551347988 2916 dbSNP
rs1230922017 2920 dbSNP
rs1029604506 2929 dbSNP
rs969609183 2935 dbSNP
rs981049777 2942 dbSNP
rs747104531 2965 dbSNP
rs1351736568 2969 dbSNP
rs985176104 2970 dbSNP
rs1342843849 2971 dbSNP
rs768726691 2975 dbSNP
rs910843480 2976 dbSNP
rs1216217965 2995 dbSNP
rs967792763 3003 dbSNP
rs569704864 3006 dbSNP
rs1422393822 3007 dbSNP
rs11742211 3016 dbSNP
rs979152838 3028 dbSNP
rs144074665 3030 dbSNP
rs561145562 3031 dbSNP
rs1362055580 3053 dbSNP
rs1181388846 3057 dbSNP
rs1482743694 3065 dbSNP
rs940999895 3076 dbSNP
rs1207525490 3082 dbSNP
rs1245989013 3086 dbSNP
rs146003742 3087 dbSNP
rs574976319 3088 dbSNP
rs973768792 3090 dbSNP
rs1229318040 3092 dbSNP
rs184007837 3097 dbSNP
rs929776368 3113 dbSNP
rs934842820 3113 dbSNP
rs1053676826 3116 dbSNP
rs917543951 3120 dbSNP
rs1289720464 3124 dbSNP
rs1433822293 3130 dbSNP
rs188931362 3139 dbSNP
rs1158935550 3140 dbSNP
rs890985128 3143 dbSNP
rs1406823779 3155 dbSNP
rs942608974 3159 dbSNP
rs1158285496 3172 dbSNP
rs1472901779 3176 dbSNP
rs1005605575 3180 dbSNP
rs1039569278 3180 dbSNP
rs1477160231 3184 dbSNP
rs1246280076 3193 dbSNP
rs1222604089 3194 dbSNP
rs903770415 3199 dbSNP
rs1453633928 3205 dbSNP
rs192208640 3212 dbSNP
rs553928488 3214 dbSNP
rs58068754 3228 dbSNP
rs892539988 3234 dbSNP
rs1305682678 3236 dbSNP
rs1374829653 3238 dbSNP
rs1013699684 3245 dbSNP
rs1275029277 3248 dbSNP
rs1438214194 3249 dbSNP
rs1287099391 3250 dbSNP
rs955324713 3262 dbSNP
rs1457692888 3271 dbSNP
rs1353119911 3292 dbSNP
rs1390833347 3292 dbSNP
rs546019179 3295 dbSNP
rs11551257 3300 dbSNP
rs1424576374 3309 dbSNP
rs1191950000 3312 dbSNP
rs1479150681 3321 dbSNP
rs1288909401 3323 dbSNP
rs1246548039 3325 dbSNP
rs1452075796 3327 dbSNP
rs776441230 3358 dbSNP
rs980953448 3364 dbSNP
rs1208674757 3367 dbSNP
rs540906710 3367 dbSNP
rs1278765320 3368 dbSNP
rs1220577485 3370 dbSNP
rs979077546 3380 dbSNP
rs1195473350 3381 dbSNP
rs1016889539 3382 dbSNP
rs564489832 3385 dbSNP
rs923708467 3387 dbSNP
rs1435459552 3392 dbSNP
rs576056664 3401 dbSNP
rs1300959984 3402 dbSNP
rs974138945 3410 dbSNP
rs918298415 3413 dbSNP
rs1447240538 3417 dbSNP
rs1438610476 3424 dbSNP
rs989003865 3437 dbSNP
rs1176942616 3440 dbSNP
rs917367109 3443 dbSNP
rs1388620281 3451 dbSNP
rs1178719491 3459 dbSNP
rs1168198318 3463 dbSNP
rs1450412351 3466 dbSNP
rs1365120722 3467 dbSNP
rs1180595859 3469 dbSNP
rs950351425 3474 dbSNP
rs866187891 3486 dbSNP
rs1237540141 3488 dbSNP
rs1211703275 3491 dbSNP
rs543679067 3505 dbSNP
rs1339455141 3507 dbSNP
rs1228712426 3510 dbSNP
rs980734933 3510 dbSNP
rs1456083138 3512 dbSNP
rs748116729 3515 dbSNP
rs929699813 3516 dbSNP
rs986544515 3532 dbSNP
rs1379877712 3534 dbSNP
rs941389502 3536 dbSNP
rs1038332755 3540 dbSNP
rs769538508 3542 dbSNP
rs1368801916 3545 dbSNP
rs1307613215 3547 dbSNP
rs897280349 3549 dbSNP
rs942515207 3553 dbSNP
rs1375121188 3554 dbSNP
rs1163193432 3558 dbSNP
rs1423740122 3561 dbSNP
rs1390518872 3567 dbSNP
rs1415077021 3574 dbSNP
rs1462407036 3587 dbSNP
rs1039518177 3592 dbSNP
rs1250465825 3603 dbSNP
rs1205389810 3604 dbSNP
rs1328586681 3606 dbSNP
rs1263441451 3611 dbSNP
rs1220638283 3612 dbSNP
rs903759672 3618 dbSNP
rs1322105164 3623 dbSNP
rs1314703698 3625 dbSNP
rs1374762874 3636 dbSNP
rs184371900 3637 dbSNP
rs1226516963 3638 dbSNP
rs930016904 3646 dbSNP
rs1287871184 3648 dbSNP
rs1052844576 3650 dbSNP
rs1398995416 3651 dbSNP
rs1446047791 3653 dbSNP
rs1167684130 3654 dbSNP
rs1292007301 3654 dbSNP
rs1350857164 3654 dbSNP
rs368491435 3654 dbSNP
rs560649865 3654 dbSNP
rs60961013 3654 dbSNP
rs1310101441 3666 dbSNP
rs1337709263 3667 dbSNP
rs1242930894 3668 dbSNP
rs1283356037 3669 dbSNP
rs1356855717 3671 dbSNP
rs1215477911 3672 dbSNP
rs1182342029 3675 dbSNP
rs1256001579 3675 dbSNP
rs892496163 3677 dbSNP
rs890930210 3680 dbSNP
rs1399219157 3699 dbSNP
rs568445932 3701 dbSNP
rs1488654754 3703 dbSNP
rs1274862181 3704 dbSNP
rs1252085588 3717 dbSNP
rs1206722785 3718 dbSNP
rs1013604848 3724 dbSNP
rs1328470269 3726 dbSNP
rs1025039096 3740 dbSNP
rs905280525 3743 dbSNP
rs1229011676 3746 dbSNP
rs866596655 3746 dbSNP
rs1002340348 3747 dbSNP
rs1299407611 3749 dbSNP
rs1186461593 3750 dbSNP
rs1368708853 3752 dbSNP
rs1328401846 3753 dbSNP
rs1018635091 3754 dbSNP
rs1016468428 3763 dbSNP
rs1160555290 3772 dbSNP
rs529402355 3789 dbSNP
rs963963416 3792 dbSNP
rs1375448467 3800 dbSNP
rs1475777227 3803 dbSNP
rs1167562091 3804 dbSNP
rs1000571419 3807 dbSNP
rs528063146 3807 dbSNP
rs993788833 3830 dbSNP
rs1465584901 3831 dbSNP
rs1186517929 3842 dbSNP
rs1464279716 3843 dbSNP
rs1025720973 3862 dbSNP
rs1298781562 3871 dbSNP
rs772969845 3879 dbSNP
rs956448448 3882 dbSNP
rs1232776327 3887 dbSNP
rs1394493522 3887 dbSNP
rs139589058 3897 dbSNP
rs1306077365 3901 dbSNP
rs912277737 3922 dbSNP
rs559737236 3937 dbSNP
rs1433262457 3939 dbSNP
rs963794741 3957 dbSNP
rs975647639 3961 dbSNP
rs1384449052 3962 dbSNP
rs867744550 3974 dbSNP
rs766052599 3980 dbSNP
rs1052332849 3982 dbSNP
rs1466230894 3984 dbSNP
rs913826611 4003 dbSNP
rs367779651 4004 dbSNP
rs1252533230 4019 dbSNP
rs1248447744 4023 dbSNP
rs1482023005 4025 dbSNP
rs1440677469 4026 dbSNP
rs1199522652 4028 dbSNP
rs980277240 4048 dbSNP
rs1046441022 4053 dbSNP
rs1282663359 4062 dbSNP
rs1452374556 4070 dbSNP
rs533033362 4070 dbSNP
rs927590193 4074 dbSNP
rs1271175705 4080 dbSNP
rs941609920 4083 dbSNP
rs1339298070 4091 dbSNP
rs1334094415 4093 dbSNP
rs3191502 4099 dbSNP
rs905270832 4102 dbSNP
rs1486458198 4104 dbSNP
rs1190457766 4112 dbSNP
rs974051529 4120 dbSNP
rs773945304 4124 dbSNP
rs1305754542 4131 dbSNP
rs918548010 4134 dbSNP
rs930094295 4135 dbSNP
rs1169488337 4144 dbSNP
rs1471766006 4151 dbSNP
rs759049354 4154 dbSNP
rs12096 4155 dbSNP
rs1367753718 4161 dbSNP
rs1188179925 4163 dbSNP
rs1475546106 4165 dbSNP
rs1259732838 4178 dbSNP
rs1038258725 4180 dbSNP
rs767047771 4191 dbSNP
rs778336416 4196 dbSNP
rs1482878541 4210 dbSNP
rs1051587285 4214 dbSNP
rs1274147835 4217 dbSNP
rs1197860031 4245 dbSNP
rs1354706709 4249 dbSNP
rs762649008 4255 dbSNP
rs1234474148 4260 dbSNP
rs188682872 4261 dbSNP
rs1285970168 4271 dbSNP
rs1354820789 4271 dbSNP
rs1330479585 4275 dbSNP
rs1026546549 4278 dbSNP
rs1389771549 4280 dbSNP
rs1171797954 4281 dbSNP
rs1163725727 4282 dbSNP
rs878901158 4282 dbSNP
rs891195506 4282 dbSNP
rs954963499 4283 dbSNP
rs1472309639 4290 dbSNP
rs942549288 4292 dbSNP
rs1007838379 4293 dbSNP
rs1450196110 4293 dbSNP
rs1019275648 4297 dbSNP
rs535886683 4298 dbSNP
rs1051214 4303 dbSNP
rs1302349790 4314 dbSNP
rs150003138 4318 dbSNP
rs1376240967 4324 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_005909 | 3UTR | GCUGGCUCUUUUUCCUAUGAAAUCUAUCAGUACCUUUCUCCAUCCGUUGUUCUCAAUAUGACCACAGAGCCUGAGUAUACCAAGAAAACCAAUAUUCGCAUUACAGGUUGCUCCUGUCCUUCCAGACACCUUUCCUGCCUGUGUGACUAACCUAAUUUUGCUAGUUCCAUAAAUACACGAUUAGUUUAGUAACAGCCAUCACAAUGUACCAUGUACAUUCAUGGUGAGAGCUAAAGAUCGACACAGACUUCUAGGAGCUUUGUUCAUACUGAUUACUUAAUCCAAUUGUAUAGAUUGAAUAUUUGAGUGGAAGGAAUUUACACUCUGUUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCAGUGUAUAUGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_005909 | 3UTR | AGUACCUUUCUCCAUCCGUUGUUCUCAAUAUGACCACAGAGCCUGAGUAUACCAAGAAAACCAAUAUUCGCAUUACAGGUUGCUCCUGUCCUUCCAGACACCUUUCCUGCCUGUGUGACUAACCUAAUUUUGCUAGUUCCAUAAAUACACGAUUAGUUUAGUAACAGCCAUCACAAUGUACCAUGUACAUUCAUGGUGAGAGCUAAAGAUCGACACAGACUUCUAGGAGCUUUGUUCAUACUGAUUACUUAAUCCAAUUGUAUAGAUUGAAUAUUUGAGUGGAAGGAAUUUACACUCUGUUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_005909 | 3UTR | AGCUGGCUCUUUUUCCUAUGAAAUCUAUCAGUACCUUUCUCCAUCCGUUGUUCUCAAUAUGACCACAGAGCCUGAGUAUACCAAGAAAACCAAUAUUCGCAUUACAGGUUGCUCCUGUCCUUCCAGACACCUUUCCUGCCUGUGUGACUAACCUAAUUUUGCUAGUUCCAUAAAUACACGAUUAGUUUAGUAACAGCCAUCACAAUGUACCAUGUACAUUCAUGGUGAGAGCUAAAGAUCGACACAGACUUCUAGGAGCUUUGUUCAUACUGAUUACUUAAUCCAAUUGUAUAGAUUGAAUAUUUGAGUGGAAGGAAUUUACACUCUGUUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCAGUGUAUAUGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_005909 | 3UTR | GUUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCAGUGUAUAUGAAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_005909 | 3UTR | AUUUACACUCUGUUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCAGUGUAUAUGAAUGUUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_005909 | 3UTR | UUUAAAUGAUGGGAUUCUAUCGAGAUAGCACUCAUGAUCAUGACCUUUUUGGUAGUAUUCUUAAACAAAAUUCUACAGAGACUAAAUGUUAGCGAUGAUCCUCCAUUUUCAAUUUUAACCAAUUCUGUCCCCUUUCUCAAAACCCUGAGCCCUGUGCAUGCUUUCUCAGUCUUGUGGUGGGACUGGAUACAAUGACUAACUUCCCCUCCUCCCCUCUUUAAACACCAUUUUCCAUGGAGUUCAAAAAAAUUUUUUUUCUUAACGUUACAUAUCAUAGUGAAUGGUUUCCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000296755.7 | 3UTR | UUGGCUUUUUAAAUUUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

Error report submission