miRTarBase - #MIRT379943


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pre-miRNA Information
pre-miRNA hsa-mir-1273h   
Genomic Coordinates chr16: 24203116 - 24203231
Description Homo sapiens miR-1273h stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1273h-5p
Sequence 33| CUGGGAGGUCAAGGCUGCAGU |53
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1028034199 14 dbSNP
rs542383563 18 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PRRG4   
Synonyms PRGP4, TMG4
Description proline rich and Gla domain 4
Transcript NM_024081   
Expression
Putative miRNA Targets on PRRG4
3'UTR of PRRG4
(miRNA target sites are highlighted)		 
>PRRG4|NM_024081|3'UTR
   1 CTACCTTGTCATTTTGGTATAAGAAATTTGTGTTATTTGATAGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACT
  81 TTGGGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCGGTCTCTACTAAAAATTCAAAAATTACCTAGG
 161 CGTCATGGGGCATGCCTGTAGTCCCACCTACTTGGGAGGCTGAAGCAGGAGAATTGCTCGAACCTGGGAGGCAGAGGTTG
 241 CAGTAAGCTGAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAATAAAATAAAAAAAGA
 321 AAGAAAGAAAAGAAGAAGAAAAGAGAAGAAGGAGAAGGAGATGAAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGA
 401 AGAAGACCACAAAAGACATGACTATCCAACTTTTTATGACAAACTGCAAGGAATAAAGGAAGAATAAGTCCATGTACTGT
 481 ACCACAGAAGTTCTGTCTGCATCTTGGACCTGAACTTGATCATTATCAGCTTGATAAGAGACTTTTTGACTCTATATCCT
 561 TGCAGTTAAGAAGAAAGCACTTTTTTGTAATGTTTGTTTTAATGGTTCAAAAAAAATCTTTCTTATAAAGAGCATAGGTA
 641 GAATTAGTGAACTCTTTGGATCCTTTGTACAGATAAAGGTTATAGATTTCTTGTGTTGAATATTAAAAAAGCAAGGATGT
 721 CTAACCATTAAGATTATCCAAAGTCAGGCTGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGATAGGTG
 801 GGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCGTCTCTACAAAAATACAAAAGAA
 881 ATTAGCCAGACATGATGGCGGGTGCCTCTAATCCCAGCTACTGGGGAGGCTGAGGTGGGAGAATCGCTTGAACTCGGGAG
 961 GTGGAGGTTGTAGTGAGGCGAGATTGTGCCATTGCACTCCAACCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAA
1041 AAAAAAAAAAAGATTATCCAAAAAGATATTGGACCTACTCTTTCTTAGGATTTTTTTGGCGGGGGGTTAGAAATACTTCA
1121 CAGAATTTGACATTTCAGTATAAATCTGTGACCTTAATATAATCACTTGGTTTTATATGTTAAATTATTGCACAGCAGTC
1201 ATCATATTTTGCAGAGTTTAGTTCTTAACTCTTGCTGTCAGTCATGTTTTATTATAGGTAGTGGGGTCAGTAGTTTTCTT
1281 CTTCTAAAAAATACTATTTGCTATGAAGTTAGTTCTTCAGAAGATACAAGTTTGCAATGAAAAGGATTTGCAAGGGTTGT
1361 TATGCTATCAAATAAACAGACCTAAAATCTAGGAGACACTAGAACTTAATGAAGTTGCCCCTGTTACTGATTAGTAAATA
1441 CTCCCATCTTCGTTGCAAAATTATCTCTCTGTATAACTACATATGATTATTTTGAAATTTGTTAAACTTCATAAGTAATA
1521 GTTTGAGAATGTGGAAAAAGTAATTTGCTTTTCTGCTCTTAAAATAATATTGATTAATGTTACCAGAAACCTTTTGCATC
1601 TCTTAATATGTCTGAACACAAAAGGAAAACACCATAATCATATAAACCCATTCTTTGTCTCTTCTTCTAAATCATATGTA
1681 TAACCAGTTTTTCCTTAAGAATGTAGCAGCATATAAGCTATAAATTTCTGGAGTATATGCACACAAATTTATCTGGGTGG
1761 GTATGTAGGTATATGTGAGTTTGTTTCCTCTTCCAGGAGCTCAAGAAATAACATACTCCTGAAAAATAGAATAGAAATTT
1841 CTGTGCTTTATGTTTTTGCCAGGCTATTACATTTTCTTATCATTTAGGATCACTTATAAAATGATCATTGTTTATTTTGT
1921 TTTATAATTTTTACAGGAGTGAGACTGCAAACCCACATGTTTGATAGTTCCTACCAAATTAAAAGTTTAGAAAGCATAAA
2001 TCATATTACAGTGCATATGTGAGTGTATGTCTCTCTTTTAAGATGCATCATCTTAAGGCAGATAAAAGTAAGTCCTTAAT
2081 CATTACAGACTGCCAAAGACTTTATCCTTTTAGATTCTCAGTCTCTTTGTTGCTTGTTGCAAATAAATCATCTAGCAACA
2161 TTTACATTTAATTAGGAAATCTAACTTGCTTTTAAAAGTTACCCACGTTGCATATAAAAATCTTGCTATTCCTTGTGTCT
2241 TGGCTTTACATAAGCACTTTTGCTCATGTGACTTTGCACTTTGCACTTATTTTAATCCTCTTTAAAGGGCTACAGGCAAA
2321 TTCTACTTTGCCATAATCACACTAAGGCATGGAAGAACAACTTGCCCAGAATCTAGCAGGTTGGTGACAACTGGGTTTAG
2401 AATGAGTGAGCACACTTTTCTAGTCCCATGTCATGCCTATAAAATTACACTGCCTCGAATTATGAAATTCAGGGATCTTG
2481 TACATAATTCTAAGTTTGGGACAGAAATTTACAAGCATTTCTCATATATACATACATTTATATATGTACATGTTACATAT
2561 ATTTAGATGTATTCTCATATACATATGAAAATATTTATGATGAATAGAATTATAAGATATGTATGTATCTTGCACTGAAT
2641 CATAATTTGAAATATTTCATGAATTCATTTACTTCTATTGACTCCCAAAATTCTAACTGCAAGCTAGCTTCAGAACCTGT
2721 GAGAACCCCACCCCACCCAAGCAGCTGCCTAGATTTGTCTACTGCTATCATTTTGTGTAAAGCAGTTGCTCTAACTTGAA
2801 TGAGTCTAGAATTCATCATTAAGATTGTGATATTTATAGAGCATCCAATGTGGAGATCATGATACTTTAAATATAAAAAG
2881 GAAAATATGATAGAACTGTTATTGACAAATGCTTATAATGATTGAAGGGAAAGTATCTCAACATTGTATCAGTCACATAT
2961 ATTTCTGTTGCTTTCACCATTTTCTATTCCTGTTGTAAGTTTGGTGGTAGATTTAGTTTTGTTTGGTTTATCTGTTTTGT
3041 TTGTGTTTTGTCTCCTGGCAATTGATTAGTGTTAATCATTAAATCTATTTTGACACAAGGTTTTATATATAATTAGATCA
3121 GTTTTCCACTTTATTACAATTAAGAAATGAGTAAAATATGGATATAAAAGGAGAATTGGATTGAAAAGACAAATACACAT
3201 TTACAAGGTCATACCTTTGGTAGGACAGACAATTCCATATAGAATATTCTCTTTTGATAATGAAAAAAATTAAAGAGAGC
3281 ACAAACTTTGACTATGTCAAAGTATTTTTATTTTTAATTTTTTGAGACAAGGTCTTGCTCTGCTACCCAGGCTGGAGTGC
3361 AGTGGTGCAATCACAACTCACTGTAGCCTGAACTTCGGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTAAGTAGCTGGG
3441 ACCACAGGTGCACCTCGGTACACCTGGCTAATTTTTGTGTTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCATGCTGG
3521 TCTCTAACTCCTGAGCTCAAGGAATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACTG
3601 GACTGCTGTGTCAAAGTTTTGCATCTTTTTTTTTTTTTTTTCCAGAAGGAGTCTCACTTTGTCACCCAGGCTGGAGTGCA
3681 GTGGAGTGATCATGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGGATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGCA
3761 TTACAGGCACCTGCCAGCACGCCTTGCAAATTTTTGTATTTTTAGTGGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGT
3841 CTCAAACTCCTGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGGGCTGGGATTACAGGCGTGAGCCACTGTGCCTG
3921 GCCCCAAGTTTTGCATCTTTTAATGCCCTCTGAACAAATACATAGAGAAAACTCTCAGAACAATTAAAACCTGCAGAGCA
4001 ACAGTGTCCTCCATGTCTTAGGTTTCAAGTTTGCCTCTAAAATTCTAATCCATATTTTTCTACTTCTCAGATAATTTATG
4081 TGTGTGTACTCTTCCTAGACGTACAAGAGACTTTTTAATGCTAAATATTTGTCAGTGCTTAACAAAAACTCAATTTCACA
4161 TTACTCATATTGTTTTTGTTTTAATTGAATGTGAATTAAATTTTTATTAGTTATTTGATTTGGAATGTTATGTATGCCAT
4241 TAACACTATTAGGGGAATCTCTAGCATTTCTGTATTTTTAAAGAATTTGATTCTTTTGTAGATTCTGCCTGTGTGGTCAT
4321 TTTAAAACATGTGTGACATATATCAGTACCTTCATTCTTCTATATTTTGTGTCTCCTCCAACCTCCAACTTTTTTTGTTT
4401 TTTGAAAAATGTTTCTCTAACACCTCAACAGTTTAAGGTAATTTAGTACACATATATCAGTATTTTTGTGATCTGAAAAA
4481 GCAACCCATTTTCTAAATTCATATTTTTCCTAAAACTTTACTATGTTTTTATTTTAAGAGGTTTCCTGTTATATACACTT
4561 TTTACACATGCAAATAAACTTTATACCAAGTGAGTA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugACGUCGGAACUGGAGGGUc 5'
            |||| |||  :||||||| 
Target 5' acTGCAACCTCCGCCTCCCAg 3'
 3699 - 3719 167.00 -29.30
2 
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              || ||| |:||||||| 
Target 5' caccCA-CCTCGGCCTCCCAa 3'
 3547 - 3566 160.00 -20.50
3 
miRNA  3' ugacGUCGGAACUGGAGGGUc 5'
              | ||||  :||||||| 
Target 5' ccgcCCGCCTCAGCCTCCCAa 3'
 3865 - 3885 157.00 -18.50
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30479425 6 COSMIC
COSN18736224 11 COSMIC
COSN26679840 43 COSMIC
COSN26647092 47 COSMIC
COSN30534119 60 COSMIC
COSN26990548 65 COSMIC
COSN30156179 86 COSMIC
COSN30118953 99 COSMIC
COSN30505100 108 COSMIC
COSN16699085 441 COSMIC
COSN26147201 647 COSMIC
COSN1529360 948 COSMIC
COSN1529361 1363 COSMIC
COSN10085097 1630 COSMIC
COSN8442691 2016 COSMIC
COSN32063616 2411 COSMIC
COSN5303548 2628 COSMIC
COSN28535711 2648 COSMIC
COSN1529362 3134 COSMIC
COSN5907622 3882 COSMIC
COSN22862968 4173 COSMIC
COSN17868106 4397 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs12795159 2 dbSNP
rs763551956 3 dbSNP
rs12794986 4 dbSNP
rs1389289650 5 dbSNP
rs541840147 9 dbSNP
rs1242614108 16 dbSNP
rs762466157 18 dbSNP
rs112118358 20 dbSNP
rs750890101 26 dbSNP
rs373369053 27 dbSNP
rs1278017376 29 dbSNP
rs758699262 31 dbSNP
rs776802910 33 dbSNP
rs200560709 39 dbSNP
rs532211710 47 dbSNP
rs751773526 47 dbSNP
rs755208996 48 dbSNP
rs781310369 50 dbSNP
rs1268530466 52 dbSNP
rs1247729929 56 dbSNP
rs1292052643 61 dbSNP
rs1283154682 63 dbSNP
rs972534602 64 dbSNP
rs995094620 78 dbSNP
rs12795035 79 dbSNP
rs1330184923 88 dbSNP
rs1409698716 89 dbSNP
rs745975706 95 dbSNP
rs1027023708 99 dbSNP
rs765424753 100 dbSNP
rs1382636969 105 dbSNP
rs950729812 117 dbSNP
rs1296602304 127 dbSNP
rs866100948 129 dbSNP
rs1413323434 130 dbSNP
rs530903376 139 dbSNP
rs909198507 143 dbSNP
rs757294293 144 dbSNP
rs773224839 163 dbSNP
rs925799865 168 dbSNP
rs1224425997 171 dbSNP
rs575667923 178 dbSNP
rs12795430 191 dbSNP
rs1053021271 197 dbSNP
rs766281046 207 dbSNP
rs1352244989 208 dbSNP
rs181339218 209 dbSNP
rs949959855 211 dbSNP
rs1228322604 220 dbSNP
rs1349170347 221 dbSNP
rs949645123 234 dbSNP
rs1405903975 235 dbSNP
rs1349555386 243 dbSNP
rs1045399300 246 dbSNP
rs111804592 258 dbSNP
rs546853914 259 dbSNP
rs1001013723 276 dbSNP
rs570532671 280 dbSNP
rs528117293 281 dbSNP
rs1404896672 282 dbSNP
rs1201370306 288 dbSNP
rs1162765505 290 dbSNP
rs1245867305 307 dbSNP
rs1006540478 312 dbSNP
rs1218942952 312 dbSNP
rs1268286577 312 dbSNP
rs1019305896 316 dbSNP
rs901058357 317 dbSNP
rs370183562 325 dbSNP
rs534557876 325 dbSNP
rs1224616408 328 dbSNP
rs1025897664 330 dbSNP
rs995438824 334 dbSNP
rs779555759 338 dbSNP
rs985268296 343 dbSNP
rs1327240090 344 dbSNP
rs1454345314 347 dbSNP
rs1455683129 353 dbSNP
rs1315710233 359 dbSNP
rs1378334926 362 dbSNP
rs1178530435 363 dbSNP
rs1408340367 363 dbSNP
rs775863745 363 dbSNP
rs1391506442 365 dbSNP
rs1414911911 365 dbSNP
rs144258001 365 dbSNP
rs67566376 365 dbSNP
rs776556583 368 dbSNP
rs1316930295 371 dbSNP
rs950940942 373 dbSNP
rs1463182613 374 dbSNP
rs959460898 374 dbSNP
rs1244389843 375 dbSNP
rs1211446188 376 dbSNP
rs1009122575 377 dbSNP
rs1277026128 377 dbSNP
rs1340371035 377 dbSNP
rs1463854714 379 dbSNP
rs373359897 380 dbSNP
rs1018867153 382 dbSNP
rs376375564 383 dbSNP
rs1390510696 386 dbSNP
rs368079059 386 dbSNP
rs371067341 386 dbSNP
rs924090421 386 dbSNP
rs949634389 386 dbSNP
rs978346261 386 dbSNP
rs547857586 389 dbSNP
rs748951528 391 dbSNP
rs1033533810 392 dbSNP
rs1185796027 395 dbSNP
rs1181929519 397 dbSNP
rs139653878 398 dbSNP
rs373612867 405 dbSNP
rs376181665 406 dbSNP
rs1207193667 408 dbSNP
rs1472759234 412 dbSNP
rs1483600100 419 dbSNP
rs568185922 423 dbSNP
rs1226464183 425 dbSNP
rs1361855274 427 dbSNP
rs1313602529 430 dbSNP
rs774254039 439 dbSNP
rs942437101 439 dbSNP
rs1352892471 442 dbSNP
rs1410281789 451 dbSNP
rs1301043605 458 dbSNP
rs900880558 465 dbSNP
rs554695989 474 dbSNP
rs913081296 476 dbSNP
rs1307178536 478 dbSNP
rs949907046 480 dbSNP
rs1386687554 483 dbSNP
rs1025591077 484 dbSNP
rs1422760406 486 dbSNP
rs537966116 489 dbSNP
rs1410929298 494 dbSNP
rs1179479346 496 dbSNP
rs888259583 511 dbSNP
rs981366157 518 dbSNP
rs7933966 525 dbSNP
rs540969435 534 dbSNP
rs1358296252 535 dbSNP
rs1038106750 543 dbSNP
rs959408952 543 dbSNP
rs112054545 552 dbSNP
rs1205789442 561 dbSNP
rs1024922172 564 dbSNP
rs1320019945 566 dbSNP
rs1281164819 573 dbSNP
rs1230226730 574 dbSNP
rs970730084 592 dbSNP
rs1287548108 595 dbSNP
rs1407737747 596 dbSNP
rs1392569254 597 dbSNP
rs929755263 599 dbSNP
rs1048339525 604 dbSNP
rs1457046947 605 dbSNP
rs1347618073 609 dbSNP
rs1473237943 609 dbSNP
rs572343960 609 dbSNP
rs924191430 609 dbSNP
rs772438228 615 dbSNP
rs1009094801 616 dbSNP
rs936935103 618 dbSNP
rs1056336 619 dbSNP
rs1487588717 631 dbSNP
rs539768251 655 dbSNP
rs989632639 656 dbSNP
rs1286133277 660 dbSNP
rs900492065 664 dbSNP
rs1483658175 667 dbSNP
rs773811859 670 dbSNP
rs1033025255 672 dbSNP
rs1226450474 683 dbSNP
rs942425645 704 dbSNP
rs1301640986 706 dbSNP
rs1056337 712 dbSNP
rs114582789 725 dbSNP
rs1442152762 727 dbSNP
rs1365031370 733 dbSNP
rs796598566 735 dbSNP
rs988912310 741 dbSNP
rs1387219272 747 dbSNP
rs1020097470 749 dbSNP
rs1471208996 755 dbSNP
rs573041139 756 dbSNP
rs1378577773 757 dbSNP
rs981356267 767 dbSNP
rs550448134 768 dbSNP
rs1264087046 771 dbSNP
rs936977521 775 dbSNP
rs1464522664 783 dbSNP
rs974118408 790 dbSNP
rs1047188173 792 dbSNP
rs888335801 794 dbSNP
rs1256425521 795 dbSNP
rs1232227010 796 dbSNP
rs1173321775 799 dbSNP
rs1310111741 800 dbSNP
rs1299399210 804 dbSNP
rs919622131 805 dbSNP
rs929677069 817 dbSNP
rs1363847134 820 dbSNP
rs1317873175 821 dbSNP
rs1055628596 822 dbSNP
rs1403507714 844 dbSNP
rs1172400556 847 dbSNP
rs1464885910 848 dbSNP
rs1392361938 851 dbSNP
rs112690216 858 dbSNP
rs886605807 859 dbSNP
rs1371064411 866 dbSNP
rs575338584 872 dbSNP
rs1256730203 888 dbSNP
rs1305644241 892 dbSNP
rs1346784830 893 dbSNP
rs1276437547 897 dbSNP
rs1228686333 898 dbSNP
rs776663361 900 dbSNP
rs544258225 901 dbSNP
rs988681843 904 dbSNP
rs564354582 905 dbSNP
rs999502696 907 dbSNP
rs1394746538 923 dbSNP
rs1372805559 924 dbSNP
rs996458910 926 dbSNP
rs1031430180 930 dbSNP
rs1368920237 932 dbSNP
rs914399350 937 dbSNP
rs1033384921 946 dbSNP
rs893142764 947 dbSNP
rs1367912610 949 dbSNP
rs765370357 954 dbSNP
rs1199891549 957 dbSNP
rs1253790845 959 dbSNP
rs1020421251 966 dbSNP
rs1476947266 967 dbSNP
rs971203035 976 dbSNP
rs1211216353 978 dbSNP
rs185862403 980 dbSNP
rs1243342230 981 dbSNP
rs911387422 983 dbSNP
rs1390483922 992 dbSNP
rs1289427283 994 dbSNP
rs1034197491 995 dbSNP
rs1409564965 1010 dbSNP
rs958848795 1011 dbSNP
rs1325795219 1013 dbSNP
rs1406107583 1015 dbSNP
rs540448084 1019 dbSNP
rs1390113983 1025 dbSNP
rs1161530363 1027 dbSNP
rs1166585184 1027 dbSNP
rs1459863309 1029 dbSNP
rs1414053716 1030 dbSNP
rs1491145956 1030 dbSNP
rs1207532517 1031 dbSNP
rs1269352595 1031 dbSNP
rs1389914356 1031 dbSNP
rs1472155735 1031 dbSNP
rs1491238011 1031 dbSNP
rs34159502 1031 dbSNP
rs761460182 1031 dbSNP
rs761609231 1031 dbSNP
rs964236221 1031 dbSNP
rs1349027455 1033 dbSNP
rs1276906800 1052 dbSNP
rs1366929295 1052 dbSNP
rs947311144 1053 dbSNP
rs974020927 1054 dbSNP
rs1321721969 1055 dbSNP
rs919552430 1057 dbSNP
rs951117665 1059 dbSNP
rs1389409485 1061 dbSNP
rs976481374 1063 dbSNP
rs982919594 1065 dbSNP
rs114207058 1066 dbSNP
rs778806366 1070 dbSNP
rs1300277607 1092 dbSNP
rs1245741183 1101 dbSNP
rs922323655 1101 dbSNP
rs943802744 1101 dbSNP
rs752850490 1102 dbSNP
rs1273061877 1103 dbSNP
rs929729438 1105 dbSNP
rs1208650967 1107 dbSNP
rs980034175 1108 dbSNP
rs746395780 1118 dbSNP
rs1315652609 1127 dbSNP
rs922104761 1131 dbSNP
rs932189295 1153 dbSNP
rs1361736548 1155 dbSNP
rs1344627565 1164 dbSNP
rs1210486482 1171 dbSNP
rs1230813556 1185 dbSNP
rs1267011516 1188 dbSNP
rs1252516619 1216 dbSNP
rs1319972114 1218 dbSNP
rs1054750757 1222 dbSNP
rs1434363523 1223 dbSNP
rs758587845 1230 dbSNP
rs1335983975 1238 dbSNP
rs1010263347 1265 dbSNP
rs1414852407 1267 dbSNP
rs1424142139 1280 dbSNP
rs1041813733 1288 dbSNP
rs1450871614 1292 dbSNP
rs941279477 1296 dbSNP
rs1248434153 1298 dbSNP
rs1055665119 1304 dbSNP
rs560871632 1313 dbSNP
rs189782675 1316 dbSNP
rs1211383661 1318 dbSNP
rs1014017281 1319 dbSNP
rs1002977215 1325 dbSNP
rs1034146637 1326 dbSNP
rs1242501844 1327 dbSNP
rs958574286 1330 dbSNP
rs1230975428 1334 dbSNP
rs1343127909 1344 dbSNP
rs1458018368 1351 dbSNP
rs1226239536 1354 dbSNP
rs1381381072 1357 dbSNP
rs1285904761 1359 dbSNP
rs373975146 1360 dbSNP
rs767349066 1364 dbSNP
rs758834315 1365 dbSNP
rs995826216 1385 dbSNP
rs906595479 1392 dbSNP
rs1387873403 1397 dbSNP
rs1167457696 1398 dbSNP
rs1402101334 1398 dbSNP
rs1026926713 1401 dbSNP
rs1415263299 1406 dbSNP
rs1182955829 1421 dbSNP
rs1472755767 1422 dbSNP
rs139967786 1425 dbSNP
rs958315573 1429 dbSNP
rs780460603 1433 dbSNP
rs982384455 1435 dbSNP
rs1366417359 1446 dbSNP
rs76845998 1448 dbSNP
rs965057600 1452 dbSNP
rs975138679 1453 dbSNP
rs1296107426 1464 dbSNP
rs530639406 1464 dbSNP
rs932209365 1467 dbSNP
rs755802990 1468 dbSNP
rs1181451350 1485 dbSNP
rs976889747 1486 dbSNP
rs1342770288 1490 dbSNP
rs922768154 1493 dbSNP
rs951159711 1495 dbSNP
rs1351183108 1504 dbSNP
rs1354275953 1512 dbSNP
rs1207150271 1519 dbSNP
rs550669085 1520 dbSNP
rs879042226 1527 dbSNP
rs879317305 1531 dbSNP
rs1184921698 1534 dbSNP
rs1055100259 1539 dbSNP
rs1464310755 1575 dbSNP
rs1473138175 1575 dbSNP
rs1175702732 1577 dbSNP
rs570542708 1578 dbSNP
rs946306395 1586 dbSNP
rs112424589 1587 dbSNP
rs1220901935 1600 dbSNP
rs539682693 1608 dbSNP
rs546468935 1609 dbSNP
rs531609744 1620 dbSNP
rs1041717180 1622 dbSNP
rs1230100030 1630 dbSNP
rs180966273 1643 dbSNP
rs200019811 1649 dbSNP
rs555743090 1653 dbSNP
rs1306021531 1656 dbSNP
rs1389376985 1660 dbSNP
rs575198979 1662 dbSNP
rs1369261595 1680 dbSNP
rs907205789 1700 dbSNP
rs1002925076 1704 dbSNP
rs1055923914 1712 dbSNP
rs1435173149 1734 dbSNP
rs894280256 1734 dbSNP
rs1391593766 1736 dbSNP
rs1055404013 1737 dbSNP
rs1458164818 1743 dbSNP
rs995379443 1747 dbSNP
rs1457099093 1752 dbSNP
rs1027246134 1758 dbSNP
rs16923607 1761 dbSNP
rs149859005 1762 dbSNP
rs1397146697 1764 dbSNP
rs1467213047 1766 dbSNP
rs1249904969 1770 dbSNP
rs1210587901 1777 dbSNP
rs1465282803 1796 dbSNP
rs12365248 1806 dbSNP
rs1019203773 1807 dbSNP
rs1236579724 1816 dbSNP
rs1338817047 1819 dbSNP
rs1313701724 1828 dbSNP
rs1301575626 1834 dbSNP
rs1230275699 1852 dbSNP
rs1233041876 1859 dbSNP
rs76346588 1864 dbSNP
rs201067338 1865 dbSNP
rs5790906 1865 dbSNP
rs764001887 1865 dbSNP
rs202127021 1866 dbSNP
rs747714630 1872 dbSNP
rs965047412 1873 dbSNP
rs900052644 1875 dbSNP
rs1483428345 1894 dbSNP
rs998476372 1897 dbSNP
rs577700703 1903 dbSNP
rs975131951 1906 dbSNP
rs1199836831 1911 dbSNP
rs1175642042 1921 dbSNP
rs1253960112 1928 dbSNP
rs1452806252 1935 dbSNP
rs1392166098 1937 dbSNP
rs1189274786 1940 dbSNP
rs1439098604 1941 dbSNP
rs1028098185 1946 dbSNP
rs953660773 1947 dbSNP
rs1471413068 1957 dbSNP
rs1256298296 1975 dbSNP
rs1209788043 1976 dbSNP
rs1345273794 1993 dbSNP
rs1299233680 2000 dbSNP
rs951659790 2014 dbSNP
rs1325309745 2019 dbSNP
rs1294090070 2020 dbSNP
rs1178083450 2045 dbSNP
rs548021076 2046 dbSNP
rs540859792 2051 dbSNP
rs1403438514 2056 dbSNP
rs1312639358 2060 dbSNP
rs1433150836 2069 dbSNP
rs1379761632 2080 dbSNP
rs982532821 2083 dbSNP
rs1017069055 2085 dbSNP
rs748898350 2089 dbSNP
rs990308293 2128 dbSNP
rs1190945709 2137 dbSNP
rs1425478046 2159 dbSNP
rs755636073 2166 dbSNP
rs1186929427 2200 dbSNP
rs1484507064 2203 dbSNP
rs560514828 2207 dbSNP
rs1411813875 2216 dbSNP
rs1205364714 2222 dbSNP
rs1338197467 2225 dbSNP
rs991080121 2228 dbSNP
rs1249043319 2238 dbSNP
rs1247700688 2244 dbSNP
rs946242266 2250 dbSNP
rs949969967 2251 dbSNP
rs574276156 2261 dbSNP
rs1303628992 2263 dbSNP
rs1413358634 2268 dbSNP
rs1312603592 2271 dbSNP
rs1308885590 2277 dbSNP
rs1409540486 2279 dbSNP
rs1394501112 2311 dbSNP
rs924458178 2317 dbSNP
rs1459421746 2333 dbSNP
rs934513471 2345 dbSNP
rs928613547 2348 dbSNP
rs1254241198 2360 dbSNP
rs938686546 2362 dbSNP
rs946792442 2367 dbSNP
rs1436849396 2375 dbSNP
rs542910275 2381 dbSNP
rs561691001 2389 dbSNP
rs1250453954 2407 dbSNP
rs1481763300 2416 dbSNP
rs998425472 2422 dbSNP
rs754646193 2424 dbSNP
rs1267584572 2428 dbSNP
rs548263009 2429 dbSNP
rs1378007627 2431 dbSNP
rs1441825297 2435 dbSNP
rs550582513 2436 dbSNP
rs1175787015 2437 dbSNP
rs1048184717 2449 dbSNP
rs1164142710 2451 dbSNP
rs747626924 2455 dbSNP
rs1004076196 2457 dbSNP
rs564212520 2458 dbSNP
rs1469346225 2460 dbSNP
rs1361738872 2481 dbSNP
rs1019528173 2484 dbSNP
rs1200491514 2485 dbSNP
rs1468551541 2491 dbSNP
rs1251765841 2494 dbSNP
rs1212445442 2500 dbSNP
rs1169733833 2503 dbSNP
rs1466625629 2503 dbSNP
rs1223542735 2509 dbSNP
rs1348933276 2510 dbSNP
rs900830937 2512 dbSNP
rs566572378 2513 dbSNP
rs1370344399 2515 dbSNP
rs566382879 2532 dbSNP
rs996498848 2536 dbSNP
rs1390705062 2539 dbSNP
rs1370066174 2542 dbSNP
rs1399919377 2544 dbSNP
rs1408048282 2546 dbSNP
rs1295558723 2547 dbSNP
rs1382441280 2550 dbSNP
rs1173977763 2561 dbSNP
rs1454447155 2564 dbSNP
rs1394016451 2571 dbSNP
rs1368560135 2577 dbSNP
rs1191176790 2592 dbSNP
rs1372880156 2592 dbSNP
rs1243227423 2596 dbSNP
rs1386071172 2597 dbSNP
rs991240417 2598 dbSNP
rs1445647948 2605 dbSNP
rs771681134 2606 dbSNP
rs1281082960 2614 dbSNP
rs532883924 2615 dbSNP
rs1367030978 2620 dbSNP
rs1347410906 2639 dbSNP
rs971068678 2646 dbSNP
rs369679588 2650 dbSNP
rs186342762 2656 dbSNP
rs981308176 2667 dbSNP
rs1028422301 2677 dbSNP
rs957790491 2682 dbSNP
rs772530010 2686 dbSNP
rs1273784283 2690 dbSNP
rs1429861841 2694 dbSNP
rs989638114 2702 dbSNP
rs1408528245 2703 dbSNP
rs1343286499 2709 dbSNP
rs934608154 2718 dbSNP
rs990356756 2722 dbSNP
rs1223106601 2732 dbSNP
rs914414951 2743 dbSNP
rs532273486 2744 dbSNP
rs1419531696 2757 dbSNP
rs1487954612 2757 dbSNP
rs1039838706 2764 dbSNP
rs1474710489 2768 dbSNP
rs1239639462 2778 dbSNP
rs921247474 2785 dbSNP
rs761284 2790 dbSNP
rs1278487371 2794 dbSNP
rs967573502 2796 dbSNP
rs1207491911 2797 dbSNP
rs535755032 2802 dbSNP
rs192349382 2819 dbSNP
rs928898524 2822 dbSNP
rs1272377011 2826 dbSNP
rs1213976529 2827 dbSNP
rs568788565 2838 dbSNP
rs991479910 2840 dbSNP
rs1038942722 2850 dbSNP
rs898703437 2851 dbSNP
rs570431543 2854 dbSNP
rs1221336041 2858 dbSNP
rs1354677095 2873 dbSNP
rs1169117681 2875 dbSNP
rs1408765614 2879 dbSNP
rs1416631301 2880 dbSNP
rs1012609869 2883 dbSNP
rs1022694885 2884 dbSNP
rs771137050 2887 dbSNP
rs915897247 2889 dbSNP
rs753429922 2890 dbSNP
rs556177945 2892 dbSNP
rs931379452 2896 dbSNP
rs1202485537 2902 dbSNP
rs1350477278 2903 dbSNP
rs1274997153 2906 dbSNP
rs1002924300 2910 dbSNP
rs1333890531 2915 dbSNP
rs1291205614 2920 dbSNP
rs557718550 2928 dbSNP
rs1457606695 2930 dbSNP
rs574523942 2942 dbSNP
rs1048990157 2968 dbSNP
rs1297209373 2979 dbSNP
rs1439423324 2985 dbSNP
rs1351059110 2987 dbSNP
rs777171241 2991 dbSNP
rs1367143292 2993 dbSNP
rs939882667 3007 dbSNP
rs1416224160 3033 dbSNP
rs1161802071 3036 dbSNP
rs1435515646 3036 dbSNP
rs990116955 3046 dbSNP
rs1407565311 3053 dbSNP
rs1040928117 3059 dbSNP
rs901069556 3061 dbSNP
rs996737312 3072 dbSNP
rs1253627515 3075 dbSNP
rs964563830 3106 dbSNP
rs1467965385 3108 dbSNP
rs1271089804 3110 dbSNP
rs1049368283 3111 dbSNP
rs893473853 3121 dbSNP
rs1317241893 3122 dbSNP
rs1362934014 3124 dbSNP
rs974591546 3136 dbSNP
rs1010649007 3142 dbSNP
rs1372627667 3145 dbSNP
rs1021164183 3161 dbSNP
rs967524795 3171 dbSNP
rs759786326 3172 dbSNP
rs934068687 3179 dbSNP
rs1392885219 3195 dbSNP
rs1320543792 3206 dbSNP
rs1454657190 3216 dbSNP
rs1218972000 3221 dbSNP
rs1157205020 3231 dbSNP
rs2419773 3237 dbSNP
rs533987439 3241 dbSNP
rs866331158 3250 dbSNP
rs1466571775 3255 dbSNP
rs992158879 3267 dbSNP
rs940260815 3269 dbSNP
rs1251086559 3281 dbSNP
rs915905027 3290 dbSNP
rs1486073925 3296 dbSNP
rs952862307 3297 dbSNP
rs1213283104 3305 dbSNP
rs1349568655 3312 dbSNP
rs79332739 3323 dbSNP
rs1184049911 3328 dbSNP
rs1013016701 3330 dbSNP
rs1232964198 3339 dbSNP
rs1368092887 3341 dbSNP
rs370478179 3343 dbSNP
rs1383204931 3361 dbSNP
rs1414663472 3365 dbSNP
rs1361783289 3366 dbSNP
rs984202493 3368 dbSNP
rs1287473736 3377 dbSNP
rs1044556335 3378 dbSNP
rs906928035 3394 dbSNP
rs118164500 3398 dbSNP
rs762925785 3412 dbSNP
rs574126159 3418 dbSNP
rs1040832727 3440 dbSNP
rs1195323287 3443 dbSNP
rs1429034635 3449 dbSNP
rs1260835465 3451 dbSNP
rs1486504870 3454 dbSNP
rs1457629455 3457 dbSNP
rs1319644416 3458 dbSNP
rs543186769 3467 dbSNP
rs1209641853 3469 dbSNP
rs556932866 3471 dbSNP
rs145459216 3478 dbSNP
rs932553817 3484 dbSNP
rs544272100 3495 dbSNP
rs1021528916 3502 dbSNP
rs1293930619 3508 dbSNP
rs1050143643 3515 dbSNP
rs893471337 3520 dbSNP
rs1226098127 3526 dbSNP
rs974537413 3531 dbSNP
rs1398798574 3536 dbSNP
rs1168544701 3538 dbSNP
rs1462466312 3542 dbSNP
rs34196291 3543 dbSNP
rs1168383898 3545 dbSNP
rs1476075141 3549 dbSNP
rs1227325883 3550 dbSNP
rs1257888287 3556 dbSNP
rs1186869566 3557 dbSNP
rs1484479813 3558 dbSNP
rs1042087753 3563 dbSNP
rs200434873 3569 dbSNP
rs1445592616 3570 dbSNP
rs1338134919 3574 dbSNP
rs539916014 3576 dbSNP
rs1212908201 3581 dbSNP
rs1336004414 3583 dbSNP
rs1238532856 3586 dbSNP
rs1231739593 3591 dbSNP
rs112070653 3595 dbSNP
rs1337720306 3599 dbSNP
rs1329739277 3608 dbSNP
rs1390911132 3609 dbSNP
rs1483000058 3611 dbSNP
rs1329239189 3624 dbSNP
rs1365216682 3626 dbSNP
rs1471629672 3626 dbSNP
rs372321215 3626 dbSNP
rs879168724 3626 dbSNP
rs80345377 3627 dbSNP
rs986940185 3641 dbSNP
rs34587471 3642 dbSNP
rs1448188561 3643 dbSNP
rs1414186775 3644 dbSNP
rs761283 3654 dbSNP
rs747727576 3673 dbSNP
rs1469286195 3677 dbSNP
rs1272988217 3678 dbSNP
rs536393750 3689 dbSNP
rs1035824043 3694 dbSNP
rs1280368603 3695 dbSNP
rs960229255 3703 dbSNP
rs1158640971 3704 dbSNP
rs529102607 3711 dbSNP
rs974500668 3712 dbSNP
rs920150052 3717 dbSNP
rs760697676 3725 dbSNP
rs1325095338 3726 dbSNP
rs548748704 3729 dbSNP
rs1204321184 3736 dbSNP
rs1386794298 3737 dbSNP
rs1158853960 3749 dbSNP
rs1469296232 3758 dbSNP
rs1377999457 3760 dbSNP
rs1044505451 3764 dbSNP
rs1454300383 3768 dbSNP
rs11032026 3778 dbSNP
rs1358497191 3780 dbSNP
rs1445260792 3781 dbSNP
rs1282616430 3782 dbSNP
rs1235160683 3785 dbSNP
rs199742058 3786 dbSNP
rs1309321265 3788 dbSNP
rs1302602513 3790 dbSNP
rs952729372 3797 dbSNP
rs1328040174 3799 dbSNP
rs536140666 3799 dbSNP
rs1318700511 3809 dbSNP
rs753607368 3811 dbSNP
rs961403641 3823 dbSNP
rs1408863942 3825 dbSNP
rs1358263645 3849 dbSNP
rs1175073499 3850 dbSNP
rs976815892 3855 dbSNP
rs1434808843 3856 dbSNP
rs1286034614 3866 dbSNP
rs1349042722 3867 dbSNP
rs1190050614 3868 dbSNP
rs183249014 3868 dbSNP
rs765359454 3871 dbSNP
rs1243107566 3872 dbSNP
rs1192887457 3887 dbSNP
rs922433827 3888 dbSNP
rs1259903659 3891 dbSNP
rs932518465 3895 dbSNP
rs891557385 3902 dbSNP
rs1049649716 3904 dbSNP
rs1209280260 3905 dbSNP
rs915113272 3908 dbSNP
rs1217454567 3909 dbSNP
rs1011212787 3910 dbSNP
rs1254095720 3911 dbSNP
rs1429793291 3912 dbSNP
rs573217130 3918 dbSNP
rs946672216 3925 dbSNP
rs1314331377 3940 dbSNP
rs1181782514 3941 dbSNP
rs1042033636 3947 dbSNP
rs902185903 3949 dbSNP
rs1412171878 3958 dbSNP
rs939074784 3963 dbSNP
rs1231376219 3964 dbSNP
rs1056265107 3965 dbSNP
rs1167796011 3973 dbSNP
rs1477054172 3982 dbSNP
rs1420392194 3992 dbSNP
rs1021306495 3997 dbSNP
rs1485454836 4002 dbSNP
rs1235844767 4012 dbSNP
rs531499528 4022 dbSNP
rs1273641699 4029 dbSNP
rs1217859650 4033 dbSNP
rs1315903350 4034 dbSNP
rs900378502 4042 dbSNP
rs1233579650 4047 dbSNP
rs1354399168 4050 dbSNP
rs996132930 4052 dbSNP
rs1443770650 4055 dbSNP
rs1354558718 4060 dbSNP
rs1030161016 4063 dbSNP
rs1464517354 4064 dbSNP
rs1424125292 4070 dbSNP
rs1166066533 4073 dbSNP
rs1475061508 4079 dbSNP
rs188666321 4082 dbSNP
rs551364648 4083 dbSNP
rs1013529212 4086 dbSNP
rs1470555010 4088 dbSNP
rs1232365352 4089 dbSNP
rs1197993359 4092 dbSNP
rs112385387 4101 dbSNP
rs12786991 4102 dbSNP
rs1326509934 4104 dbSNP
rs1320842055 4106 dbSNP
rs554003271 4108 dbSNP
rs567733855 4109 dbSNP
rs536487094 4110 dbSNP
rs1307869711 4112 dbSNP
rs1445267904 4119 dbSNP
rs948971616 4130 dbSNP
rs1367277663 4135 dbSNP
rs1348429707 4136 dbSNP
rs976804618 4140 dbSNP
rs980356259 4154 dbSNP
rs757789568 4168 dbSNP
rs1277354705 4169 dbSNP
rs953891311 4169 dbSNP
rs1455615301 4171 dbSNP
rs1254842899 4178 dbSNP
rs57091563 4186 dbSNP
rs1053708805 4196 dbSNP
rs1263453185 4200 dbSNP
rs1217573628 4203 dbSNP
rs915080245 4207 dbSNP
rs57686372 4224 dbSNP
rs891509651 4226 dbSNP
rs1204512137 4232 dbSNP
rs947125665 4233 dbSNP
rs554122000 4258 dbSNP
rs946589364 4259 dbSNP
rs1237350764 4264 dbSNP
rs1372466824 4267 dbSNP
rs1304811157 4276 dbSNP
rs1386696136 4277 dbSNP
rs1453548075 4297 dbSNP
rs191765733 4312 dbSNP
rs1454541886 4321 dbSNP
rs978035081 4328 dbSNP
rs1042739956 4329 dbSNP
rs1157034444 4333 dbSNP
rs900201749 4340 dbSNP
rs1395696612 4342 dbSNP
rs1190485291 4353 dbSNP
rs545945522 4356 dbSNP
rs866040716 4364 dbSNP
rs1390696396 4375 dbSNP
rs564541907 4382 dbSNP
rs1165653762 4385 dbSNP
rs1392182946 4387 dbSNP
rs1486044197 4390 dbSNP
rs548119752 4390 dbSNP
rs577645983 4390 dbSNP
rs1262035196 4391 dbSNP
rs879092420 4392 dbSNP
rs939022276 4393 dbSNP
rs1280400154 4397 dbSNP
rs1322419010 4410 dbSNP
rs1298322961 4411 dbSNP
rs1310929863 4411 dbSNP
rs1004692665 4414 dbSNP
rs1340233255 4425 dbSNP
rs1015180013 4438 dbSNP
rs576010168 4440 dbSNP
rs1416851739 4446 dbSNP
rs1439135401 4449 dbSNP
rs961445724 4457 dbSNP
rs1302314772 4460 dbSNP
rs1464573020 4464 dbSNP
rs1375878717 4472 dbSNP
rs1172373541 4476 dbSNP
rs1428899621 4481 dbSNP
rs995590130 4482 dbSNP
rs754701138 4484 dbSNP
rs1486434448 4487 dbSNP
rs1257648941 4489 dbSNP
rs1199422294 4502 dbSNP
rs112233605 4503 dbSNP
rs894857964 4504 dbSNP
rs1366558281 4513 dbSNP
rs1227258160 4522 dbSNP
rs1228713424 4537 dbSNP
rs1268506295 4547 dbSNP
rs970054812 4557 dbSNP
rs947849637 4558 dbSNP
rs1044920852 4585 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084064. RNA binding protein: AGO2. Condition:CLIP_noemetine_AbnovaAb HITS-CLIP data was present in GSM1084067. RNA binding protein: AGO2. Condition:CLIP_emetine_SantaCruzAb HITS-CLIP data was present in GSM1084069. RNA binding protein: AGO2. Condition:CLIP_emetine_SigmaAb HITS-CLIP data was present in GSM1084072. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb HITS-CLIP data was present in GSM1084078. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep2_AbnovaAb HITS-CLIP data was present in GSM1084079. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep2_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1084064
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noemetine_AbnovaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1084067
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SantaCruzAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM1084069
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_SigmaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGCCACUGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM1084072
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_AbnovaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084078
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep2_AbnovaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGUGAGCCAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM1084079
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep2_AbnovaAb
Location of target site ENST00000257836.3 | 3UTR | AAAGGGCUGGGAUUACAGGCGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
494 hsa-miR-1273h-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT074355 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT100721 TJAP1 tight junction associated protein 1 2 2
MIRT115545 MAZ MYC associated zinc finger protein 2 2
MIRT124982 XIAP X-linked inhibitor of apoptosis 2 4
MIRT139911 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT177183 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT187994 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT207410 MAT2A methionine adenosyltransferase 2A 2 6
MIRT241928 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT260110 KLHL21 kelch like family member 21 2 2
MIRT260358 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266428 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294663 ZNF548 zinc finger protein 548 2 2
MIRT351039 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT379943 PRRG4 proline rich and Gla domain 4 2 2
MIRT398983 KAT7 lysine acetyltransferase 7 2 2
MIRT441465 BEST3 bestrophin 3 2 2
MIRT446750 ZNF491 zinc finger protein 491 2 2
MIRT449224 RAD51B RAD51 paralog B 2 2
MIRT450623 AQR aquarius intron-binding spliceosomal factor 2 2
MIRT451090 ZNF584 zinc finger protein 584 2 2
MIRT451558 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451736 CES3 carboxylesterase 3 2 2
MIRT452411 QDPR quinoid dihydropteridine reductase 2 2
MIRT452559 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452851 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452922 DISC1 disrupted in schizophrenia 1 2 2
MIRT453043 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453097 HOXC4 homeobox C4 2 2
MIRT453297 ZNF394 zinc finger protein 394 2 2
MIRT453593 ZNF557 zinc finger protein 557 2 2
MIRT453787 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453987 CECR1 adenosine deaminase 2 2 2
MIRT454083 TMEM209 transmembrane protein 209 2 2
MIRT454652 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454753 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 2 2
MIRT455311 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456468 SERAC1 serine active site containing 1 2 2
MIRT456554 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456716 TMEM239 transmembrane protein 239 2 4
MIRT456796 SIGLEC14 sialic acid binding Ig like lectin 14 2 2
MIRT457487 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457999 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458130 TLCD2 TLC domain containing 2 2 2
MIRT459027 ZNF490 zinc finger protein 490 2 4
MIRT459119 FADS6 fatty acid desaturase 6 2 2
MIRT459315 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459385 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459412 FAM83B family with sequence similarity 83 member B 2 2
MIRT459974 RFT1 RFT1 homolog 2 2
MIRT460480 FAM105A family with sequence similarity 105 member A 2 6
MIRT460586 FEM1A fem-1 homolog A 2 2
MIRT460920 NOA1 nitric oxide associated 1 2 4
MIRT461072 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461590 DPH2 DPH2 homolog 2 2
MIRT461854 ZNF317 zinc finger protein 317 2 2
MIRT462176 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462446 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT463854 WNT7B Wnt family member 7B 2 2
MIRT464310 UST uronyl 2-sulfotransferase 2 2
MIRT464815 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465453 TOR2A torsin family 2 member A 2 2
MIRT466073 TMEM184C transmembrane protein 184C 2 2
MIRT466514 TBXA2R thromboxane A2 receptor 2 2
MIRT467072 SRRD SRR1 domain containing 2 2
MIRT469551 RARA retinoic acid receptor alpha 2 2
MIRT469741 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470759 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470875 PLXND1 plexin D1 2 2
MIRT470976 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471048 PIM3 Pim-3 proto-oncogene, serine/threonine kinase 2 2
MIRT471215 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471246 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471286 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471467 PDE7B phosphodiesterase 7B 2 2
MIRT473069 MORN4 MORN repeat containing 4 2 4
MIRT473989 LRRC20 leucine rich repeat containing 20 2 2
MIRT474518 KLHDC8A kelch domain containing 8A 2 2
MIRT474990 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475547 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 2
MIRT476350 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT477298 EPHB2 EPH receptor B2 2 2
MIRT477933 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478282 DDX19A DEAD-box helicase 19A 2 4
MIRT478472 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478559 CTNND1 catenin delta 1 2 2
MIRT478618 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478834 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479007 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479166 CLSPN claspin 2 2
MIRT482454 ADAR adenosine deaminase, RNA specific 2 4
MIRT483019 KHSRP KH-type splicing regulatory protein 2 4
MIRT483798 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT486087 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486304 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486490 MYH11 myosin heavy chain 11 2 2
MIRT486881 TSPYL4 TSPY like 4 2 2
MIRT487125 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487542 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487676 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT489251 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489276 RBM8A RNA binding motif protein 8A 2 8
MIRT489496 CRLF3 cytokine receptor like factor 3 2 4
MIRT489571 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489694 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT490166 TMEM63C transmembrane protein 63C 2 2
MIRT491199 MLLT1 MLLT1, super elongation complex subunit 2 4
MIRT491260 DHX40 DEAH-box helicase 40 2 2
MIRT491385 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491548 YAE1D1 Yae1 domain containing 1 2 2
MIRT492722 PHF12 PHD finger protein 12 2 2
MIRT493866 FAM73B mitoguardin 2 2 4
MIRT494549 BAK1 BCL2 antagonist/killer 1 2 2
MIRT498586 KRT8 keratin 8 2 2
MIRT498722 SNTN sentan, cilia apical structure protein 2 6
MIRT499982 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT503414 SLC25A45 solute carrier family 25 member 45 2 6
MIRT508491 FTO FTO, alpha-ketoglutarate dependent dioxygenase 2 2
MIRT508877 METTL14 methyltransferase like 14 2 2
MIRT509622 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510104 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510139 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510353 ZNF703 zinc finger protein 703 2 6
MIRT510620 TMEM167A transmembrane protein 167A 2 4
MIRT510786 SF3B3 splicing factor 3b subunit 3 2 6
MIRT511021 NRF1 nuclear respiratory factor 1 2 2
MIRT513925 GHITM growth hormone inducible transmembrane protein 2 2
MIRT514342 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515015 SUMF2 sulfatase modifying factor 2 2 2
MIRT515246 DUSP28 dual specificity phosphatase 28 2 2
MIRT516202 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516435 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 2 4
MIRT516666 ZNF860 zinc finger protein 860 2 4
MIRT518373 ZNF250 zinc finger protein 250 2 2
MIRT518930 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519676 ZNF70 zinc finger protein 70 2 2
MIRT519902 ZFAND4 zinc finger AN1-type containing 4 2 4
MIRT519945 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520321 UBXN2A UBX domain protein 2A 2 2
MIRT520606 TMEM41B transmembrane protein 41B 2 2
MIRT520663 TMEM11 transmembrane protein 11 2 2
MIRT520852 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521443 RAD51 RAD51 recombinase 2 2
MIRT521671 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha 2 2
MIRT522281 NKAP NFKB activating protein 2 2
MIRT522333 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT522535 MED28 mediator complex subunit 28 2 6
MIRT523478 GNG4 G protein subunit gamma 4 2 2
MIRT523672 FOPNL FGFR1OP N-terminal like 2 2
MIRT523715 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523867 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524043 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524167 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524928 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526825 PHC1 polyhomeotic homolog 1 2 2
MIRT531017 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 2 2
MIRT536085 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT540681 BMP3 bone morphogenetic protein 3 2 2
MIRT541708 TMEM33 transmembrane protein 33 2 2
MIRT541755 KLF8 Kruppel like factor 8 2 2
MIRT541888 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT545714 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT559054 C19orf47 chromosome 19 open reading frame 47 2 4
MIRT561748 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562365 ETV3 ETS variant 3 2 2
MIRT562821 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562900 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564452 SLC35E2 solute carrier family 35 member E2 2 5
MIRT569111 ONECUT3 one cut homeobox 3 2 2
MIRT569224 SUSD1 sushi domain containing 1 2 2
MIRT570271 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570498 TFIP11 tuftelin interacting protein 11 2 2
MIRT570844 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571311 TPCN2 two pore segment channel 2 2 2
MIRT572077 EXOC8 exocyst complex component 8 2 2
MIRT572116 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573054 TRIB1 tribbles pseudokinase 1 2 2
MIRT573483 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573656 HES6 hes family bHLH transcription factor 6 2 2
MIRT574343 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576494 Slc35e2 solute carrier family 35, member E2 2 4
MIRT608033 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT611326 NANOS1 nanos C2HC-type zinc finger 1 2 2
MIRT613660 KIAA1210 KIAA1210 2 2
MIRT615638 ATF6 activating transcription factor 6 2 2
MIRT618573 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618865 MBL2 mannose binding lectin 2 2 2
MIRT618962 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619172 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620298 AQP6 aquaporin 6 2 2
MIRT620683 RFTN2 raftlin family member 2 2 2
MIRT621637 UBXN2B UBX domain protein 2B 2 2
MIRT621993 STK4 serine/threonine kinase 4 2 2
MIRT622421 NUDT19 nudix hydrolase 19 2 2
MIRT622804 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624786 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624968 ZNF665 zinc finger protein 665 2 4
MIRT625479 SMAD9 SMAD family member 9 2 2
MIRT626594 ACAA2 acetyl-CoA acyltransferase 2 2 4
MIRT626708 TRIM65 tripartite motif containing 65 2 2
MIRT626975 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627489 STRIP2 striatin interacting protein 2 2 2
MIRT628505 ZNF878 zinc finger protein 878 2 2
MIRT628533 ZNF701 zinc finger protein 701 2 2
MIRT628591 TMEM251 transmembrane protein 251 2 2
MIRT628818 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628896 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628958 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629005 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629059 KIF1C kinesin family member 1C 2 2
MIRT629192 PAPOLA poly(A) polymerase alpha 2 2
MIRT629346 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629447 WIZ widely interspaced zinc finger motifs 2 2
MIRT629696 XKR4 XK related 4 2 2
MIRT629737 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629896 SPATA5 spermatogenesis associated 5 2 2
MIRT629953 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630023 MTL5 testis expressed metallothionein like protein 2 2
MIRT630181 TLN1 talin 1 2 2
MIRT630325 PAQR5 progestin and adipoQ receptor family member 5 2 2
MIRT630389 MYH9 myosin heavy chain 9 2 4
MIRT630695 EXTL3 exostosin like glycosyltransferase 3 2 2
MIRT631054 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631130 SYNJ2 synaptojanin 2 2 2
MIRT631374 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631557 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631615 PCDHB11 protocadherin beta 11 2 2
MIRT631935 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632109 SSR1 signal sequence receptor subunit 1 2 2
MIRT632168 CCL22 C-C motif chemokine ligand 22 2 2
MIRT632445 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632652 NAV1 neuron navigator 1 2 2
MIRT632688 MTMR10 myotubularin related protein 10 2 2
MIRT632828 IGF1 insulin like growth factor 1 2 2
MIRT632905 FRRS1 ferric chelate reductase 1 2 2
MIRT633027 DNAL1 dynein axonemal light chain 1 2 2
MIRT633379 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633440 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633726 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT633832 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT633862 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT634042 NUP155 nucleoporin 155 2 2
MIRT634266 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634374 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634439 PDE7A phosphodiesterase 7A 2 2
MIRT634573 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT634620 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT634693 DSEL dermatan sulfate epimerase-like 2 2
MIRT634768 CD3D CD3d molecule 2 2
MIRT635024 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT635384 NHLRC2 NHL repeat containing 2 2 2
MIRT635577 TTC9C tetratricopeptide repeat domain 9C 2 2
MIRT635793 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT635837 ZNF264 zinc finger protein 264 2 2
MIRT636043 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT636070 ZNF280C zinc finger protein 280C 2 2
MIRT636697 ARSK arylsulfatase family member K 2 2
MIRT637438 ZNF324B zinc finger protein 324B 2 2
MIRT637582 PLD6 phospholipase D family member 6 2 2
MIRT637672 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637887 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638353 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638597 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638821 CRTAP cartilage associated protein 2 2
MIRT638871 CEP97 centrosomal protein 97 2 4
MIRT639660 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT640200 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT641592 TNS4 tensin 4 2 2
MIRT644993 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645059 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646948 UPK3BL uroplakin 3B like 1 2 2
MIRT647306 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT648300 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649043 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649884 SLFN12L schlafen family member 12 like 2 2
MIRT650196 DOCK7 dedicator of cytokinesis 7 2 2
MIRT654789 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655667 NUP43 nucleoporin 43 2 2
MIRT655925 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT656433 MARCH6 membrane associated ring-CH-type finger 6 2 2
MIRT657713 GPC4 glypican 4 2 2
MIRT659302 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659844 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT660660 ANKFY1 ankyrin repeat and FYVE domain containing 1 2 2
MIRT661308 CPM carboxypeptidase M 2 2
MIRT661473 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661906 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT662064 ZNF284 zinc finger protein 284 2 2
MIRT662491 ANGPT4 angiopoietin 4 2 2
MIRT662657 LRRC47 leucine rich repeat containing 47 2 2
MIRT662804 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT663164 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663376 ZNF770 zinc finger protein 770 2 4
MIRT663418 ZNF607 zinc finger protein 607 2 2
MIRT663990 WDR75 WD repeat domain 75 2 2
MIRT664157 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 4
MIRT664489 POLR3K RNA polymerase III subunit K 2 2
MIRT665058 CCDC77 coiled-coil domain containing 77 2 2
MIRT665080 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665420 WDR55 WD repeat domain 55 2 2
MIRT665716 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665923 TBC1D19 TBC1 domain family member 19 2 4
MIRT666239 SLC38A7 solute carrier family 38 member 7 2 4
MIRT666840 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667378 MOB1B MOB kinase activator 1B 2 2
MIRT667573 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667894 ING1 inhibitor of growth family member 1 2 2
MIRT667977 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668197 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668279 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668386 FAT3 FAT atypical cadherin 3 2 2
MIRT668444 FAM208A family with sequence similarity 208 member A 2 2
MIRT668998 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669180 CCNF cyclin F 2 2
MIRT669444 ATL3 atlastin GTPase 3 2 2
MIRT669661 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669890 KIAA0754 KIAA0754 2 4
MIRT669973 SSR3 signal sequence receptor subunit 3 2 2
MIRT670153 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670240 TRIM13 tripartite motif containing 13 2 2
MIRT670274 CBY3 chibby family member 3 2 2
MIRT670358 ULBP3 UL16 binding protein 3 2 4
MIRT670627 BVES blood vessel epicardial substance 2 2
MIRT670731 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670770 TRIM66 tripartite motif containing 66 2 2
MIRT670913 DESI1 desumoylating isopeptidase 1 2 2
MIRT671216 CLSTN1 calsyntenin 1 2 2
MIRT671398 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671427 TOX4 TOX high mobility group box family member 4 2 2
MIRT671654 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671702 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672136 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672395 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672508 GGCX gamma-glutamyl carboxylase 2 2
MIRT672572 RNF24 ring finger protein 24 2 2
MIRT672789 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT673019 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT673190 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673372 ZNF124 zinc finger protein 124 2 2
MIRT673495 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673852 CAPN7 calpain 7 2 2
MIRT673929 ZNF500 zinc finger protein 500 2 2
MIRT673986 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674076 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674123 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674297 THAP5 THAP domain containing 5 2 2
MIRT674370 POLR3D RNA polymerase III subunit D 2 2
MIRT674641 NKRF NFKB repressing factor 2 2
MIRT674665 PLCE1 phospholipase C epsilon 1 2 2
MIRT674725 ZNF451 zinc finger protein 451 2 4
MIRT674779 NPR1 natriuretic peptide receptor 1 2 2
MIRT674889 RASSF9 Ras association domain family member 9 2 2
MIRT675017 SNX1 sorting nexin 1 2 2
MIRT675341 KLHL26 kelch like family member 26 2 2
MIRT675416 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675497 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675615 EHD2 EH domain containing 2 2 2
MIRT675735 AHR aryl hydrocarbon receptor 2 2
MIRT675857 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675990 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676213 TMEM91 transmembrane protein 91 2 2
MIRT676406 MRO maestro 2 2
MIRT677299 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677387 PCNP PEST proteolytic signal containing nuclear protein 2 2
MIRT677859 ABI2 abl interactor 2 2 2
MIRT677965 ITGB3 integrin subunit beta 3 2 2
MIRT678175 CRCP CGRP receptor component 2 2
MIRT678273 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT678665 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 2 2
MIRT679003 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT679053 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT679461 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679513 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679914 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680029 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680245 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680279 AKIP1 A-kinase interacting protein 1 2 2
MIRT680499 PRIM2 DNA primase subunit 2 2 2
MIRT680586 ZNF573 zinc finger protein 573 2 2
MIRT680629 KIAA1456 KIAA1456 2 2
MIRT680819 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680998 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681122 INTS7 integrator complex subunit 7 2 2
MIRT681161 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681221 DUSP19 dual specificity phosphatase 19 2 2
MIRT681304 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681341 BRI3BP BRI3 binding protein 2 2
MIRT681608 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681779 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681892 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682084 ITGA3 integrin subunit alpha 3 2 4
MIRT682139 SMS spermine synthase 2 2
MIRT682217 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682367 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682535 EXOSC2 exosome component 2 2 2
MIRT682618 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683643 ZNF695 zinc finger protein 695 2 2
MIRT684008 FOLR1 folate receptor 1 2 2
MIRT684442 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684855 ZNF749 zinc finger protein 749 2 2
MIRT684956 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685044 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685095 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685382 TNFRSF13C TNF receptor superfamily member 13C 2 2
MIRT685456 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT685810 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685913 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686665 TMEM120B transmembrane protein 120B 2 2
MIRT686955 SFT2D2 SFT2 domain containing 2 2 2
MIRT687118 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687739 KIAA1328 KIAA1328 2 2
MIRT688063 GLUL glutamate-ammonia ligase 2 2
MIRT688191 FNIP1 folliculin interacting protein 1 2 2
MIRT688769 CDH7 cadherin 7 2 2
MIRT688979 ATP6AP1 ATPase H+ transporting accessory protein 1 2 2
MIRT689572 NUDT7 nudix hydrolase 7 2 2
MIRT689683 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689930 MANSC1 MANSC domain containing 1 2 2
MIRT690089 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690190 C5orf45 MRN complex interacting protein 2 2
MIRT690246 CAMLG calcium modulating ligand 2 2
MIRT690411 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT690840 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 2
MIRT690889 FUT2 fucosyltransferase 2 2 2
MIRT691107 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691229 DFNB59 pejvakin 2 2
MIRT691300 ZNF681 zinc finger protein 681 2 2
MIRT691366 GP5 glycoprotein V platelet 2 2
MIRT691797 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692142 CEP104 centrosomal protein 104 2 2
MIRT692572 NCMAP non-compact myelin associated protein 2 2
MIRT692649 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692744 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693092 SCNM1 sodium channel modifier 1 2 2
MIRT693296 SYTL3 synaptotagmin like 3 2 2
MIRT693392 ZNF460 zinc finger protein 460 2 2
MIRT693530 ZNF708 zinc finger protein 708 2 2
MIRT693562 PIGR polymeric immunoglobulin receptor 2 2
MIRT694492 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694722 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694866 ZNF417 zinc finger protein 417 2 2
MIRT695070 ZNF17 zinc finger protein 17 2 2
MIRT695451 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695724 ZNF117 zinc finger protein 117 2 2
MIRT695898 MED16 mediator complex subunit 16 2 2
MIRT696244 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 2
MIRT696259 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696512 C3 complement C3 2 2
MIRT696560 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696643 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696791 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696819 PLLP plasmolipin 2 2
MIRT697088 GPKOW G-patch domain and KOW motifs 2 2
MIRT697153 INMT indolethylamine N-methyltransferase 2 2
MIRT697202 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697322 ZNF641 zinc finger protein 641 2 2
MIRT697578 YME1L1 YME1 like 1 ATPase 2 2
MIRT697619 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT698619 TES testin LIM domain protein 2 2
MIRT698804 STK38 serine/threonine kinase 38 2 2
MIRT698949 SPAST spastin 2 2
MIRT699083 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699430 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699550 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700324 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700360 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700462 PURB purine rich element binding protein B 2 2
MIRT701677 MYADM myeloid associated differentiation marker 2 2
MIRT701757 MSL2 MSL complex subunit 2 2 2
MIRT701977 MIER3 MIER family member 3 2 2
MIRT703178 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703203 GOLGA3 golgin A3 2 2
MIRT703359 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703425 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703484 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT703590 FBXO45 F-box protein 45 2 2
MIRT703806 EVI5 ecotropic viral integration site 5 2 2
MIRT703915 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704234 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704646 CLCC1 chloride channel CLIC like 1 2 2
MIRT705151 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705480 ASXL2 additional sex combs like 2, transcriptional regulator 2 2
MIRT705530 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705661 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706144 ZNF674 zinc finger protein 674 2 2
MIRT706473 SNX27 sorting nexin family member 27 2 2
MIRT708254 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT708838 SCAND3 zinc finger BED-type containing 9 1 1
MIRT710437 BTNL3 butyrophilin like 3 2 2
MIRT711325 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT716151 RBM48 RNA binding motif protein 48 2 2
MIRT717402 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT720866 ADCY5 adenylate cyclase 5 2 2
MIRT722226 ZNF503 zinc finger protein 503 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1273h-5p Paclitaxel 36314 NSC125973 approved sensitive High Ovarian Cancer cell line (SKOV3)
hsa-miR-1273h-5p Tripterygium wilfordii Hook F resistant tissue
hsa-miR-1273h-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)

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