miRTarBase - #MIRT380785


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pre-miRNA Information
pre-miRNA hsa-mir-100   
Genomic Coordinates chr11: 122152229 - 122152308
Synonyms MIRN100, miR-100, MIR100
Description Homo sapiens miR-100 stem-loop
Comment This sequence is localised to chromosome 11 and was named mir-100-11 in reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-100-3p
Sequence 48| CAAGCUUGUAUCUAUAGGUAUG |69
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 11 - 122152259 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs773933142 2 dbSNP
rs1321972926 4 dbSNP
rs770590792 7 dbSNP
rs1388368183 9 dbSNP
rs909526986 14 dbSNP
rs749039221 15 dbSNP
rs530428149 17 dbSNP
rs775253529 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZFP3   
Synonyms ZNF752
Description ZFP3 zinc finger protein
Transcript NM_153018   
Expression
Putative miRNA Targets on ZFP3
3'UTR of ZFP3
(miRNA target sites are highlighted)		 
>ZFP3|NM_153018|3'UTR
   1 TCTGCAAAATAGGAAAGCTTTTAGTGGAAAAGCTAAAGTCCAACTTATTCATTTGTTCATAATATGCAAATATGCACCCC
  81 AAGTATTCAAATCCAATGAATGGACAGAACCTCCTCTGTCCTCCCACTGATTTTAAATAGTTGGTTGAAGAAGATGAGGC
 161 ACTTTTTTTTTTTTTTTTTTAAGCATTGGGGTCTTGCTCTGTTGCCCAGGATGGGATGCAGTGGCACAGTCGTAACTCAC
 241 TGCTTCCTTGAACTCCTGGGCTCAAACAGTCCTCCTGCCTCAGCCTTCCAAATAGCTAGGACTGCAGGCACTAATGAGGC
 321 ACTTTTATGAATTATTCATTGAGAGGTTTCAGTGTGCTAAGTTAAATCATAAAAGCTCTTTCAGGCCTTAATTTCCCCTC
 401 TGTCCTTCCTTCCCCTTCTCCTCCCCCAGTGGATCACATAACAAACATTAAGGGTCTGTACCAGCCATCTTTCCTAAATT
 481 ACTCTTCAGCAAAATTGTGGGAACAGGATTCCACCACCTCCTAAGAATGAGAGTTGACTCATTGACTGTTACCCCCTGAA
 561 ATATTAGAAAGTCATAATTTAGAAGACACACCTCATTCTCCTGTCCACTGTTTAGCATTGGAATAATTTAGTAAGCTGTT
 641 ATTAGCTTCAAAGTCGTCCAGCCCTGCTATGAAGTTACTTTAGAAGATGGCAGCATTAATGAAGAAGCAGGCTCATTTCA
 721 CATCTGTCAGGCTTCCTTATTCATCTGAAGAGGCTGCCATGATGGAGGAACTGACAGGCAATTTACAACGGGATTATAAG
 801 TGAAGGCCTTAGAATCCAGAGGGGCCGATTAGGCAACACCAGGGGATAAACAATTGAGGTCACACTGCTCGGCATGGGCA
 881 GAAGCAGCTCTTCAGGAGCTGTCCACACTTCAGGGGTGCTCAGACTGACTGCTCCTAAGAATTCTGCTGCATATATTTTT
 961 AGCCCCATCTCCTGCCACTGCTGACAGATATTGTGACAGTAAGTAGCAGACAGGACTGTGGCTTCACCTCCTCCGGGCAC
1041 CTGGCTACAGTGATGAGTCAGTTCACCTGATGACAAACCAGGGTCTGGCCTTGCCAAAGCACTTAAGTTCTCATGACCTG
1121 GACCGCACTGGAGGCCCTGGCTAAGTCAGGATGTCGTAGCCTCTTCTTGGTTTTGCCCCTTGGCCTTGAAATTCTTTTTT
1201 CTTGAATAACTTTAAAAAAATAGAGATAAAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAATGCCTGGGCTCCAGCAATC
1281 TTTTTGCCTCAACTTCCCAAAGTATTGAGATTACAGGTGTGAGCTACCATGCCCGGCCTTGAAATTCTTTCTTCGCTATG
1361 TCTGCATGTTTTTTGTGTTCTGTATTTATTTCTTCTCCAAGGAAACAGCCTACATTTTCCATGTGTCCATGTTTCTGAGG
1441 CCGTGGGTGACAGTGGGAATTGCACTAATGGGGGCCCAACAGGCCTGGGGGCTGGTCTTAGCGCTAGACCTTGAACAAGG
1521 CACTTCACCTGCTGGTCTCCAATTTTCTCCTCTGTAAAATGAAAGAGTTGAACTAAGTGATCTCAAAAGTTTCAACCAGC
1601 CCGATAATTCCTTAATTCTTTAAAAATTTAACTTTATATATCTTTATTATTCTTTAACCTCATCTTTGTTACACTAATAT
1681 TAGTCACTAATATTTATTGAGTGTTTACTACCTGACAGGCAGAGTGCCAGTTTACATTTTAATTTTCACATCATTTCTAT
1761 GATGTGGGTACTCATTTTTTTAAAGCTTTATGAAGGTATAATTTACGTACTATAAAATTCACCTGTTTTAAGTGTTCAGT
1841 TGAATGATTTTTAATTTACATAGTGGTGCAACCATCAATGATGTGGGTATTCTTACCCCAATTTAAAAGATAAGAAGGGG
1921 CAGTGTTAAGTAATTGACCCATGATTCCACAGCTAGTAAGAGCGACAGCCAAGACTCCAAACCTGGTTGATGCTCTTAAC
2001 CACTGTGCTATGCCGCAGGTAGGCAGATTCATTACTGCCTTATCTGAAACCCTTTGCACAGTTTCTATTACTGATTTCTA
2081 TGTAGATTTGAATATAACAAATTTAAATCATGTCCTTGGTAACAGAACTGATCACAGCCAAAAAAAATTCACCAAATGGG
2161 TTTATTCTGTACTCCAATATAGGTGTCTTCCCAGGTTTATATCCTTGGCTTGAGAAAAGGGTTGTACAAATAGATGATTG
2241 CAGAGTTTCCACATCCTTCCAGATACCTCTGCCTCTAGCAGTCACACTCTTAGTAAGGGAAGTTGTTTGATTTACTTCTT
2321 CCCTTAGGTTGATTACAAGTGAAGTGCGCCGTCTTATTCCTTTTTCATTGCTGGAGCACAAATTGAATTGTGCCCAGACC
2401 GTATCTTTCTCACATGAAACCTGGATCTCACCTATCCCTTCCATGCCTGATTCCCGTGTTTGCATATTTTATTTCCACAT
2481 TTACCTCTTGTCAGCCCTGACAGAGAATTTGGCACCCCTTCAAGCTTCTCCTAAACAATCTATGCACACAAACACCCCTG
2561 AGCAATATGGACTTCACTGAAGATAGTGTGTAAGCAAAGGAGAAGAGTTCACATTGTGCATCCTATTAGACATTTTGTTC
2641 TCAGAAGTACCTTACTGGCCAAACCAATGAAGGTTTTCCTCTTGTCCTCCCCTCTCAAGGCTCAGTCACCTCAACTTCTT
2721 TTTGCCTACTAGATATCCAATCCATCACCTCGCCTCCCCTGGCCCTAGCTCAATTACCCTCTTAAACCCATTCCTGCTCA
2801 GCAAAACTTCCTCTAGTTCACCATTCATTCATTTGAACATTAGGAGGCAATTTAGTGACCTGTTGTACCTGACCATGTTC
2881 TTAAGGGGGAGGTCTCACGTCTCATTCCCAGAAAAGTCTACCATATATAGATACATATTCCCCGCCCCGCCCCAGATTTC
2961 TGGTGAATGAAATCACTTGTATCTTATTAGGTACATATACGCAAATCCTTAACCTCAATTCTCTGTCCTCTTCATGTCTT
3041 ACCCAGATATCTCAGGAAGATTTCTCTTTTCCTTCTGTTTGCCTCCCTCTTCGACTTACTTGGGAGTCAGCATCTGACCA
3121 CAGTCGTGACTGGTAATGATGATTTGTGCAAATACTATCAAGGAAAGGACATGAATTGTCTTAATTTTAGACCCATTAAA
3201 AAACCGCACAGGCCTCAATCTTAAAAGTCCTATCTAAATACCCAGAAATACCCTTCAGAATTTTTGAAGCTATGCCCATG
3281 TACAAAATTTTCTTCCTTCCCTAATTTTAATGGTATACTAACACCTTAGGTAAATAAAATATTTCTTTACTATTTTATTG
3361 AAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guauggauaucuAUGUUCGAAc 5'
                      | ||||||| 
Target 5' atttggcaccccTTCAAGCTTc 3'
 2507 - 2528 142.00 -7.90
2 
miRNA  3' guaUGGAUAUCUAUGUUCGAAc 5'
             |:||:|     ||:|||| 
Target 5' cacATCTGT-----CAGGCTTc 3'
 719 - 735 130.00 -8.40
3 
miRNA  3' guAUGG----AUAUCUAU------GUUCGAAc 5'
            |||:    |||||:|:      ||:|:|| 
Target 5' tgTACTCCAATATAGGTGTCTTCCCAGGTTTa 3'
 2168 - 2199 124.00 -9.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30121546 30 COSMIC
COSN27005675 36 COSMIC
COSN31614259 39 COSMIC
COSN30129175 54 COSMIC
COSN30493840 70 COSMIC
COSN30173371 89 COSMIC
COSN30162146 101 COSMIC
COSN20113332 180 COSMIC
COSN30526593 208 COSMIC
COSN31589811 244 COSMIC
COSN15627023 289 COSMIC
COSN30142737 330 COSMIC
COSN15627024 379 COSMIC
COSN30543811 385 COSMIC
COSN30116823 410 COSMIC
COSN31486276 413 COSMIC
COSN28757786 414 COSMIC
COSN31484820 421 COSMIC
COSN30120568 444 COSMIC
COSN16879219 466 COSMIC
COSN26958056 580 COSMIC
COSN31565732 601 COSMIC
COSN20113335 609 COSMIC
COSN30128898 656 COSMIC
COSN26562944 657 COSMIC
COSN30117649 657 COSMIC
COSN30131062 673 COSMIC
COSN16314201 734 COSMIC
COSN32058033 790 COSMIC
COSN30130890 828 COSMIC
COSN31582842 872 COSMIC
COSN30178003 922 COSMIC
COSN26599707 975 COSMIC
COSN31597344 976 COSMIC
COSN29345637 1015 COSMIC
COSN30513445 1061 COSMIC
COSN26508984 1082 COSMIC
COSN31589805 1108 COSMIC
COSN30534430 1115 COSMIC
COSN19664251 1126 COSMIC
COSN31552381 1157 COSMIC
COSN31520322 1234 COSMIC
COSN1198414 1260 COSMIC
COSN15627025 1303 COSMIC
COSN31591564 1312 COSMIC
COSN31961270 1313 COSMIC
COSN30130487 1348 COSMIC
COSN30126007 1375 COSMIC
COSN15627026 1395 COSMIC
COSN30142736 1402 COSMIC
COSN30128279 1405 COSMIC
COSN20093190 1426 COSMIC
COSN15627027 1442 COSMIC
COSN30122697 1492 COSMIC
COSN31487666 1525 COSMIC
COSN15627028 1585 COSMIC
COSN15627029 1686 COSMIC
COSN31607483 1758 COSMIC
COSN26878195 1893 COSMIC
COSN31546490 1910 COSMIC
COSN28718923 1921 COSMIC
COSN31565740 1944 COSMIC
COSN30142354 1964 COSMIC
COSN31609358 2086 COSMIC
COSN15627030 2115 COSMIC
COSN31582711 2126 COSMIC
COSN23012627 2147 COSMIC
COSN26670702 2196 COSMIC
COSN30142832 2227 COSMIC
COSN30125349 2260 COSMIC
COSN21162515 2296 COSMIC
COSN23421625 2348 COSMIC
COSN31479635 2367 COSMIC
COSN16965509 2402 COSMIC
COSN31519209 2495 COSMIC
COSN31520056 2541 COSMIC
COSN17153963 2545 COSMIC
COSN26601022 2640 COSMIC
COSN26600632 2641 COSMIC
COSN26585042 2648 COSMIC
COSN30527537 2743 COSMIC
COSN31579694 2766 COSMIC
COSN30510508 2774 COSMIC
COSN31479621 2827 COSMIC
COSN30174062 2912 COSMIC
COSN31568344 2914 COSMIC
COSN30129246 2931 COSMIC
COSN31606967 2931 COSMIC
COSN15627031 2941 COSMIC
COSN30138362 2945 COSMIC
COSN30143954 2949 COSMIC
COSN30134654 2950 COSMIC
COSN30117330 2970 COSMIC
COSN31570036 3001 COSMIC
COSN28064659 3022 COSMIC
COSN8603400 3024 COSMIC
COSN15627032 3094 COSMIC
COSN30131926 3124 COSMIC
COSN1721613 3151 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1341488584 1 dbSNP
rs201769994 3 dbSNP
rs1284583757 5 dbSNP
rs1356463001 7 dbSNP
rs376118254 11 dbSNP
rs1279014552 19 dbSNP
rs1481964078 23 dbSNP
rs1183274268 25 dbSNP
rs1256391716 27 dbSNP
rs1418341353 30 dbSNP
rs1024796623 35 dbSNP
rs970558772 36 dbSNP
rs766570816 38 dbSNP
rs190279307 44 dbSNP
rs1033522709 45 dbSNP
rs763059135 48 dbSNP
rs771227524 48 dbSNP
rs570944873 49 dbSNP
rs1381077116 51 dbSNP
rs112119667 54 dbSNP
rs1474210481 61 dbSNP
rs1286116042 65 dbSNP
rs899204767 66 dbSNP
rs1355132619 76 dbSNP
rs757367715 81 dbSNP
rs996181042 97 dbSNP
rs539957501 99 dbSNP
rs1159060487 112 dbSNP
rs1458553465 117 dbSNP
rs1297828024 128 dbSNP
rs1180540559 129 dbSNP
rs913570022 130 dbSNP
rs375522066 133 dbSNP
rs1195187578 138 dbSNP
rs890596653 138 dbSNP
rs556567106 142 dbSNP
rs1020477519 147 dbSNP
rs1355343773 150 dbSNP
rs903434221 154 dbSNP
rs966472011 161 dbSNP
rs1491152236 162 dbSNP
rs976929800 162 dbSNP
rs1163186502 163 dbSNP
rs1279100824 163 dbSNP
rs1288742229 163 dbSNP
rs1352187315 163 dbSNP
rs1437795434 163 dbSNP
rs1491355135 163 dbSNP
rs398030215 163 dbSNP
rs534780916 163 dbSNP
rs61053618 163 dbSNP
rs61700157 163 dbSNP
rs754212503 163 dbSNP
rs869031807 163 dbSNP
rs879069171 163 dbSNP
rs1315212679 165 dbSNP
rs1031977816 174 dbSNP
rs957695215 179 dbSNP
rs1476520608 180 dbSNP
rs1191337771 181 dbSNP
rs990546212 181 dbSNP
rs922760234 182 dbSNP
rs1227246175 184 dbSNP
rs148354426 187 dbSNP
rs1049931214 188 dbSNP
rs1212785746 190 dbSNP
rs1205220012 200 dbSNP
rs970531325 202 dbSNP
rs1220712836 215 dbSNP
rs542466004 222 dbSNP
rs1484622608 224 dbSNP
rs1190001159 228 dbSNP
rs910097188 232 dbSNP
rs1427695956 233 dbSNP
rs1401495996 236 dbSNP
rs1333856544 248 dbSNP
rs1460146775 251 dbSNP
rs1372185974 254 dbSNP
rs1168126757 257 dbSNP
rs940592979 260 dbSNP
rs369615711 265 dbSNP
rs1037007318 270 dbSNP
rs1458001838 270 dbSNP
rs182119836 275 dbSNP
rs1169253386 276 dbSNP
rs1196602225 293 dbSNP
rs1479763253 294 dbSNP
rs1251018482 298 dbSNP
rs1210848974 303 dbSNP
rs541203728 304 dbSNP
rs973300085 315 dbSNP
rs1045831952 322 dbSNP
rs1378379391 331 dbSNP
rs1311876299 334 dbSNP
rs1413409048 336 dbSNP
rs765891013 345 dbSNP
rs141452428 349 dbSNP
rs532828564 355 dbSNP
rs543117665 374 dbSNP
rs146326320 376 dbSNP
rs1381991106 377 dbSNP
rs1467068438 379 dbSNP
rs1293933901 387 dbSNP
rs1440237145 394 dbSNP
rs1382144768 398 dbSNP
rs1179368861 402 dbSNP
rs1418307534 409 dbSNP
rs1056352914 412 dbSNP
rs890519582 418 dbSNP
rs1486808693 426 dbSNP
rs750487523 427 dbSNP
rs1033491363 435 dbSNP
rs957919024 445 dbSNP
rs187940642 448 dbSNP
rs1355022667 453 dbSNP
rs1020598568 459 dbSNP
rs1288806140 463 dbSNP
rs1237280547 465 dbSNP
rs191879241 466 dbSNP
rs10521138 470 dbSNP
rs1312912811 479 dbSNP
rs976518594 480 dbSNP
rs532310593 481 dbSNP
rs1311715613 485 dbSNP
rs953780783 485 dbSNP
rs138354115 488 dbSNP
rs551570722 500 dbSNP
rs910065987 516 dbSNP
rs1156774753 519 dbSNP
rs1485530586 522 dbSNP
rs1368814195 524 dbSNP
rs73331341 531 dbSNP
rs769131187 534 dbSNP
rs1255734128 542 dbSNP
rs981916419 543 dbSNP
rs1488673951 548 dbSNP
rs1189468611 549 dbSNP
rs1203908879 566 dbSNP
rs1350663766 568 dbSNP
rs1266402536 578 dbSNP
rs1247500397 585 dbSNP
rs142752730 590 dbSNP
rs1432932120 591 dbSNP
rs1400039065 592 dbSNP
rs369304927 595 dbSNP
rs1316067614 600 dbSNP
rs950128080 605 dbSNP
rs1381575202 607 dbSNP
rs11313283 608 dbSNP
rs1164758962 608 dbSNP
rs774832272 608 dbSNP
rs199506205 609 dbSNP
rs200349074 610 dbSNP
rs1045711206 611 dbSNP
rs748550528 619 dbSNP
rs961904434 630 dbSNP
rs781396701 639 dbSNP
rs1287437305 641 dbSNP
rs758192367 642 dbSNP
rs550013736 643 dbSNP
rs1435283463 648 dbSNP
rs747848609 650 dbSNP
rs570170681 652 dbSNP
rs937438445 656 dbSNP
rs769367872 657 dbSNP
rs3744705 663 dbSNP
rs1010819182 670 dbSNP
rs1226119855 687 dbSNP
rs1196829031 692 dbSNP
rs1213581685 696 dbSNP
rs986094501 700 dbSNP
rs555759429 701 dbSNP
rs1438349903 703 dbSNP
rs1393470653 706 dbSNP
rs911933233 707 dbSNP
rs1212906198 709 dbSNP
rs770398371 711 dbSNP
rs1421971223 714 dbSNP
rs944753824 715 dbSNP
rs1475141320 718 dbSNP
rs566232178 723 dbSNP
rs1196063915 731 dbSNP
rs3744706 732 dbSNP
rs903327998 737 dbSNP
rs1477187728 738 dbSNP
rs1439168971 741 dbSNP
rs1270470324 751 dbSNP
rs371090072 753 dbSNP
rs1192956684 755 dbSNP
rs759381824 764 dbSNP
rs557884162 769 dbSNP
rs1418946117 771 dbSNP
rs1054655783 790 dbSNP
rs1231972517 791 dbSNP
rs577826059 798 dbSNP
rs1370238663 801 dbSNP
rs1391556606 802 dbSNP
rs894710957 806 dbSNP
rs1013212964 807 dbSNP
rs1391792981 808 dbSNP
rs1327140692 811 dbSNP
rs767362535 816 dbSNP
rs1438209201 817 dbSNP
rs1274869342 825 dbSNP
rs543650359 827 dbSNP
rs985237896 828 dbSNP
rs1017097373 840 dbSNP
rs963244433 842 dbSNP
rs1221936069 845 dbSNP
rs906204548 849 dbSNP
rs973001357 854 dbSNP
rs1471376880 855 dbSNP
rs918794538 865 dbSNP
rs3744707 869 dbSNP
rs573710768 871 dbSNP
rs927325709 872 dbSNP
rs937407031 874 dbSNP
rs1271071716 875 dbSNP
rs1054507889 877 dbSNP
rs146075424 878 dbSNP
rs1277948219 881 dbSNP
rs1027486246 884 dbSNP
rs139597936 885 dbSNP
rs1224073317 889 dbSNP
rs1432962028 891 dbSNP
rs1042228550 894 dbSNP
rs553354358 897 dbSNP
rs1176101880 908 dbSNP
rs987549737 912 dbSNP
rs998117106 919 dbSNP
rs1402744716 922 dbSNP
rs1480348575 923 dbSNP
rs986021011 923 dbSNP
rs1029321061 926 dbSNP
rs1185097178 932 dbSNP
rs765503656 933 dbSNP
rs889479447 938 dbSNP
rs1263730390 946 dbSNP
rs1217885169 949 dbSNP
rs1315121082 954 dbSNP
rs548892622 955 dbSNP
rs528370330 957 dbSNP
rs977881284 959 dbSNP
rs924708035 966 dbSNP
rs1473226551 968 dbSNP
rs936093393 969 dbSNP
rs1354916771 970 dbSNP
rs1164605818 972 dbSNP
rs1017129389 984 dbSNP
rs551701656 987 dbSNP
rs1412100942 988 dbSNP
rs1343987949 991 dbSNP
rs1419519930 992 dbSNP
rs916115144 992 dbSNP
rs962500140 995 dbSNP
rs750648907 1000 dbSNP
rs994719315 1002 dbSNP
rs1323813056 1005 dbSNP
rs758585926 1014 dbSNP
rs1423708209 1015 dbSNP
rs1187833814 1022 dbSNP
rs565029236 1026 dbSNP
rs1439376217 1027 dbSNP
rs376784737 1027 dbSNP
rs1309363771 1029 dbSNP
rs971607608 1031 dbSNP
rs766561961 1035 dbSNP
rs62074218 1036 dbSNP
rs1003222213 1039 dbSNP
rs1414117771 1044 dbSNP
rs958732251 1048 dbSNP
rs990114345 1051 dbSNP
rs1036463518 1056 dbSNP
rs897578703 1061 dbSNP
rs573442377 1070 dbSNP
rs914599657 1079 dbSNP
rs1397160905 1084 dbSNP
rs1324371652 1088 dbSNP
rs1460594640 1088 dbSNP
rs1354795812 1093 dbSNP
rs1171839876 1094 dbSNP
rs1228742715 1100 dbSNP
rs994581491 1107 dbSNP
rs946173310 1108 dbSNP
rs376981816 1125 dbSNP
rs12600437 1126 dbSNP
rs149748293 1129 dbSNP
rs1305843098 1134 dbSNP
rs1295421135 1136 dbSNP
rs1235654350 1137 dbSNP
rs1018877807 1142 dbSNP
rs570029072 1156 dbSNP
rs1440697303 1157 dbSNP
rs1254107067 1162 dbSNP
rs1373555482 1164 dbSNP
rs184068233 1168 dbSNP
rs1483637511 1176 dbSNP
rs1353397588 1177 dbSNP
rs977430095 1191 dbSNP
rs1192721359 1193 dbSNP
rs748414214 1193 dbSNP
rs1419488276 1195 dbSNP
rs889448108 1196 dbSNP
rs1251433359 1203 dbSNP
rs924644797 1211 dbSNP
rs1479814165 1214 dbSNP
rs957433824 1216 dbSNP
rs1250829831 1219 dbSNP
rs990241622 1223 dbSNP
rs916039819 1227 dbSNP
rs8068849 1228 dbSNP
rs188221588 1234 dbSNP
rs1038057698 1240 dbSNP
rs928889202 1247 dbSNP
rs940308040 1249 dbSNP
rs1312931321 1260 dbSNP
rs866258508 1266 dbSNP
rs374343776 1278 dbSNP
rs993958967 1279 dbSNP
rs1169887349 1281 dbSNP
rs558019866 1285 dbSNP
rs577965952 1290 dbSNP
rs1332113352 1293 dbSNP
rs756450311 1299 dbSNP
rs888920348 1313 dbSNP
rs1188691834 1316 dbSNP
rs971575168 1318 dbSNP
rs1486696188 1320 dbSNP
rs1255952378 1324 dbSNP
rs193098830 1331 dbSNP
rs748936765 1335 dbSNP
rs958948663 1336 dbSNP
rs1237398279 1339 dbSNP
rs1293560977 1348 dbSNP
rs990535120 1348 dbSNP
rs770490299 1349 dbSNP
rs1353038678 1355 dbSNP
rs967854528 1355 dbSNP
rs977558349 1360 dbSNP
rs1311808799 1369 dbSNP
rs1226488878 1375 dbSNP
rs923767950 1376 dbSNP
rs1382707177 1383 dbSNP
rs557568444 1385 dbSNP
rs144529706 1393 dbSNP
rs1411464847 1397 dbSNP
rs1165937528 1403 dbSNP
rs1476340633 1407 dbSNP
rs746345923 1407 dbSNP
rs11078546 1408 dbSNP
rs942606772 1410 dbSNP
rs1264504777 1412 dbSNP
rs1203713832 1413 dbSNP
rs1464733532 1424 dbSNP
rs1273364196 1430 dbSNP
rs559043117 1439 dbSNP
rs555914817 1443 dbSNP
rs771868369 1444 dbSNP
rs928831014 1452 dbSNP
rs1227585885 1458 dbSNP
rs1328080970 1463 dbSNP
rs572883071 1466 dbSNP
rs994320187 1471 dbSNP
rs775374239 1475 dbSNP
rs1381382489 1478 dbSNP
rs1046843185 1479 dbSNP
rs10744994 1480 dbSNP
rs1433552451 1486 dbSNP
rs1170351054 1488 dbSNP
rs1404230735 1491 dbSNP
rs1392614498 1496 dbSNP
rs1002955213 1503 dbSNP
rs1414999770 1504 dbSNP
rs373699179 1510 dbSNP
rs1386196034 1514 dbSNP
rs1254016415 1517 dbSNP
rs112694016 1522 dbSNP
rs1048746664 1530 dbSNP
rs565173136 1542 dbSNP
rs530852920 1543 dbSNP
rs894704613 1546 dbSNP
rs1233627398 1548 dbSNP
rs1340870746 1551 dbSNP
rs1011861933 1552 dbSNP
rs1347696394 1554 dbSNP
rs1305327868 1568 dbSNP
rs1438468117 1570 dbSNP
rs1201545131 1576 dbSNP
rs1022028701 1580 dbSNP
rs998741013 1584 dbSNP
rs1410548388 1585 dbSNP
rs1398712184 1587 dbSNP
rs1031611992 1588 dbSNP
rs967444927 1603 dbSNP
rs1396264676 1609 dbSNP
rs544059285 1614 dbSNP
rs1245705361 1622 dbSNP
rs1463822903 1622 dbSNP
rs1182062146 1624 dbSNP
rs1211037201 1627 dbSNP
rs1011570012 1629 dbSNP
rs1022994502 1641 dbSNP
rs970161414 1641 dbSNP
rs1348438553 1650 dbSNP
rs561152002 1653 dbSNP
rs1030386875 1655 dbSNP
rs954779221 1656 dbSNP
rs529340855 1660 dbSNP
rs1344048459 1662 dbSNP
rs961862756 1664 dbSNP
rs972933261 1673 dbSNP
rs111385927 1677 dbSNP
rs931591176 1679 dbSNP
rs1378880491 1680 dbSNP
rs1409314190 1681 dbSNP
rs1376554901 1691 dbSNP
rs549466397 1697 dbSNP
rs148461365 1698 dbSNP
rs1157930375 1700 dbSNP
rs911086175 1702 dbSNP
rs773632905 1714 dbSNP
rs1470944965 1717 dbSNP
rs8082301 1723 dbSNP
rs943097938 1730 dbSNP
rs535974164 1731 dbSNP
rs919576635 1735 dbSNP
rs923103883 1736 dbSNP
rs370306087 1738 dbSNP
rs1386446835 1744 dbSNP
rs1321608961 1748 dbSNP
rs1225304068 1749 dbSNP
rs934501997 1750 dbSNP
rs867202255 1753 dbSNP
rs1227793919 1755 dbSNP
rs1356195142 1758 dbSNP
rs1052968210 1759 dbSNP
rs1446417176 1760 dbSNP
rs929622654 1775 dbSNP
rs1319332072 1806 dbSNP
rs766580105 1807 dbSNP
rs751525523 1808 dbSNP
rs1157978833 1813 dbSNP
rs1475363686 1820 dbSNP
rs938449688 1837 dbSNP
rs571594813 1847 dbSNP
rs1419385921 1850 dbSNP
rs1288260120 1863 dbSNP
rs1055878813 1873 dbSNP
rs1044384535 1881 dbSNP
rs537766292 1889 dbSNP
rs894672063 1890 dbSNP
rs1012242210 1893 dbSNP
rs1230593038 1894 dbSNP
rs1021912823 1895 dbSNP
rs145261901 1898 dbSNP
rs373997728 1899 dbSNP
rs1467712349 1906 dbSNP
rs1335774223 1911 dbSNP
rs184718339 1912 dbSNP
rs1295176766 1914 dbSNP
rs1036200184 1915 dbSNP
rs187084989 1919 dbSNP
rs767960252 1920 dbSNP
rs9898284 1921 dbSNP
rs1386893030 1922 dbSNP
rs1320383048 1926 dbSNP
rs1461610826 1927 dbSNP
rs1396290654 1936 dbSNP
rs1180542619 1937 dbSNP
rs1018116754 1943 dbSNP
rs1422764082 1944 dbSNP
rs573019118 1957 dbSNP
rs1420062150 1963 dbSNP
rs147585436 1964 dbSNP
rs1474421088 1969 dbSNP
rs1409630422 1972 dbSNP
rs994279790 1974 dbSNP
rs1194076348 1975 dbSNP
rs1473554121 1979 dbSNP
rs963945826 1981 dbSNP
rs1275314904 1984 dbSNP
rs1219376237 1988 dbSNP
rs974319137 1994 dbSNP
rs1027150052 2002 dbSNP
rs778098626 2005 dbSNP
rs1216824728 2008 dbSNP
rs116062285 2014 dbSNP
rs1215848481 2015 dbSNP
rs575575292 2016 dbSNP
rs1372675252 2036 dbSNP
rs1291437838 2044 dbSNP
rs1456919554 2044 dbSNP
rs372023190 2053 dbSNP
rs1354603610 2056 dbSNP
rs1171992850 2057 dbSNP
rs982382808 2063 dbSNP
rs560872543 2065 dbSNP
rs1389501586 2066 dbSNP
rs928334768 2068 dbSNP
rs938418596 2072 dbSNP
rs923001266 2081 dbSNP
rs1307544339 2082 dbSNP
rs1488316285 2083 dbSNP
rs934421307 2087 dbSNP
rs1314420179 2099 dbSNP
rs1349133063 2099 dbSNP
rs1055509393 2111 dbSNP
rs1412246174 2114 dbSNP
rs1340600867 2115 dbSNP
rs760328767 2116 dbSNP
rs1274595213 2117 dbSNP
rs1235398381 2124 dbSNP
rs1350526413 2126 dbSNP
rs1289310910 2133 dbSNP
rs1299719554 2134 dbSNP
rs1385876642 2135 dbSNP
rs1052936965 2140 dbSNP
rs1321498741 2140 dbSNP
rs1243150522 2145 dbSNP
rs914417340 2148 dbSNP
rs376625498 2150 dbSNP
rs1313420837 2155 dbSNP
rs1436565289 2157 dbSNP
rs540101907 2161 dbSNP
rs1175142250 2163 dbSNP
rs559400370 2170 dbSNP
rs905835329 2175 dbSNP
rs1003275420 2179 dbSNP
rs1173968953 2188 dbSNP
rs903412776 2195 dbSNP
rs778518862 2196 dbSNP
rs1203770959 2202 dbSNP
rs1486980657 2209 dbSNP
rs1249022727 2210 dbSNP
rs77247308 2220 dbSNP
rs528598452 2221 dbSNP
rs1182819725 2223 dbSNP
rs375858309 2228 dbSNP
rs1317094161 2230 dbSNP
rs368739997 2235 dbSNP
rs1256803713 2236 dbSNP
rs1051748355 2238 dbSNP
rs575438798 2242 dbSNP
rs1225976313 2252 dbSNP
rs866788421 2273 dbSNP
rs4790742 2279 dbSNP
rs1313027178 2280 dbSNP
rs1007640049 2286 dbSNP
rs1400042927 2289 dbSNP
rs1017665394 2298 dbSNP
rs571331209 2300 dbSNP
rs1454150322 2303 dbSNP
rs963795027 2304 dbSNP
rs775327481 2313 dbSNP
rs1471768286 2322 dbSNP
rs1167988262 2323 dbSNP
rs1411328695 2326 dbSNP
rs1188803574 2328 dbSNP
rs191893304 2332 dbSNP
rs183664441 2334 dbSNP
rs976134772 2339 dbSNP
rs951319160 2345 dbSNP
rs982688797 2348 dbSNP
rs928303685 2349 dbSNP
rs768627131 2350 dbSNP
rs1309165459 2351 dbSNP
rs776510613 2352 dbSNP
rs763270181 2358 dbSNP
rs766470495 2361 dbSNP
rs914386035 2368 dbSNP
rs1234618789 2371 dbSNP
rs1043202523 2377 dbSNP
rs1338588875 2377 dbSNP
rs1311929902 2380 dbSNP
rs779966731 2380 dbSNP
rs947216335 2380 dbSNP
rs1340659362 2384 dbSNP
rs927185643 2385 dbSNP
rs1227240227 2386 dbSNP
rs938654094 2387 dbSNP
rs1057440113 2388 dbSNP
rs897160089 2390 dbSNP
rs140445235 2401 dbSNP
rs747037025 2401 dbSNP
rs1343675502 2402 dbSNP
rs1205325367 2412 dbSNP
rs536847436 2415 dbSNP
rs1250253247 2420 dbSNP
rs1482261209 2426 dbSNP
rs553629585 2428 dbSNP
rs890719290 2429 dbSNP
rs1048478275 2431 dbSNP
rs1007523845 2437 dbSNP
rs1006999142 2438 dbSNP
rs865774671 2444 dbSNP
rs1039070113 2447 dbSNP
rs1424554529 2454 dbSNP
rs774611374 2457 dbSNP
rs995358639 2458 dbSNP
rs1188169246 2463 dbSNP
rs1228064062 2484 dbSNP
rs1388618591 2488 dbSNP
rs1026803491 2490 dbSNP
rs1434127974 2506 dbSNP
rs901417838 2509 dbSNP
rs35152311 2515 dbSNP
rs566555070 2523 dbSNP
rs538753240 2525 dbSNP
rs772235196 2528 dbSNP
rs1388659599 2536 dbSNP
rs1162779780 2537 dbSNP
rs558559493 2541 dbSNP
rs1392590983 2543 dbSNP
rs955711029 2544 dbSNP
rs3744708 2545 dbSNP
rs376640615 2547 dbSNP
rs554845003 2549 dbSNP
rs574671825 2556 dbSNP
rs1304905506 2558 dbSNP
rs767630529 2559 dbSNP
rs1272390172 2564 dbSNP
rs959951113 2568 dbSNP
rs991093284 2569 dbSNP
rs1227318468 2570 dbSNP
rs776928065 2571 dbSNP
rs1276463702 2573 dbSNP
rs1434917021 2579 dbSNP
rs1235652551 2601 dbSNP
rs144200829 2602 dbSNP
rs915576349 2603 dbSNP
rs151145028 2605 dbSNP
rs1366978334 2607 dbSNP
rs927184305 2608 dbSNP
rs938566154 2610 dbSNP
rs772488502 2614 dbSNP
rs1300034745 2620 dbSNP
rs918562770 2622 dbSNP
rs753261249 2626 dbSNP
rs1048408888 2631 dbSNP
rs1181857526 2632 dbSNP
rs1483765622 2634 dbSNP
rs572971545 2654 dbSNP
rs1204314748 2664 dbSNP
rs888512108 2667 dbSNP
rs867713308 2679 dbSNP
rs942837991 2680 dbSNP
rs1040266758 2682 dbSNP
rs1274517036 2687 dbSNP
rs1343056008 2687 dbSNP
rs1229029242 2689 dbSNP
rs1256299758 2689 dbSNP
rs934782043 2691 dbSNP
rs1051935260 2693 dbSNP
rs1464267592 2698 dbSNP
rs912122730 2710 dbSNP
rs943614027 2711 dbSNP
rs1451603543 2733 dbSNP
rs1376653006 2734 dbSNP
rs1336489346 2736 dbSNP
rs901345179 2737 dbSNP
rs1400995036 2740 dbSNP
rs1039019972 2741 dbSNP
rs200849831 2751 dbSNP
rs1424576127 2752 dbSNP
rs141078542 2753 dbSNP
rs530928280 2757 dbSNP
rs1048314536 2759 dbSNP
rs1178865226 2760 dbSNP
rs886535502 2764 dbSNP
rs1284751799 2766 dbSNP
rs1457025849 2774 dbSNP
rs1319015783 2778 dbSNP
rs1331575123 2779 dbSNP
rs1003963348 2781 dbSNP
rs878981620 2789 dbSNP
rs189542912 2794 dbSNP
rs561606919 2800 dbSNP
rs1380439279 2805 dbSNP
rs1286494483 2809 dbSNP
rs1446530532 2810 dbSNP
rs1340219263 2811 dbSNP
rs1321724874 2812 dbSNP
rs1009890277 2820 dbSNP
rs1386016290 2822 dbSNP
rs752632780 2825 dbSNP
rs1157686751 2829 dbSNP
rs895709701 2831 dbSNP
rs759529260 2842 dbSNP
rs761115798 2842 dbSNP
rs1180021873 2849 dbSNP
rs1292382046 2869 dbSNP
rs1472449092 2876 dbSNP
rs530362846 2885 dbSNP
rs1021342645 2892 dbSNP
rs1266474728 2899 dbSNP
rs1466374576 2899 dbSNP
rs1047966 2900 dbSNP
rs1220517644 2906 dbSNP
rs181923776 2908 dbSNP
rs1292173271 2913 dbSNP
rs1227104656 2915 dbSNP
rs139902750 2921 dbSNP
rs1298723740 2924 dbSNP
rs1034555886 2926 dbSNP
rs959916861 2927 dbSNP
rs1319499063 2929 dbSNP
rs538691501 2935 dbSNP
rs1022625761 2936 dbSNP
rs1351083976 2939 dbSNP
rs1162164546 2940 dbSNP
rs1404681385 2941 dbSNP
rs1170171024 2942 dbSNP
rs1447462812 2943 dbSNP
rs968823113 2944 dbSNP
rs1488969525 2945 dbSNP
rs754163672 2945 dbSNP
rs1248517220 2949 dbSNP
rs1219484108 2950 dbSNP
rs951323032 2960 dbSNP
rs1276015168 2980 dbSNP
rs532530382 2982 dbSNP
rs1031798231 2987 dbSNP
rs1231008260 2991 dbSNP
rs1340450145 2993 dbSNP
rs1466382714 2995 dbSNP
rs1297375759 2996 dbSNP
rs984083826 2999 dbSNP
rs756928105 3001 dbSNP
rs552311175 3002 dbSNP
rs1435132282 3005 dbSNP
rs568906352 3014 dbSNP
rs987606408 3015 dbSNP
rs745545399 3016 dbSNP
rs778475538 3017 dbSNP
rs750058616 3024 dbSNP
rs1193040518 3035 dbSNP
rs1427791575 3039 dbSNP
rs1389317339 3042 dbSNP
rs942743924 3044 dbSNP
rs943581510 3048 dbSNP
rs1472571188 3049 dbSNP
rs537824966 3051 dbSNP
rs774399087 3063 dbSNP
rs1189511335 3064 dbSNP
rs1488210711 3067 dbSNP
rs1039810021 3069 dbSNP
rs922734939 3073 dbSNP
rs975441837 3075 dbSNP
rs1274348833 3078 dbSNP
rs115099601 3080 dbSNP
rs1313514415 3085 dbSNP
rs1052628906 3086 dbSNP
rs1163625178 3088 dbSNP
rs892722566 3090 dbSNP
rs1350539388 3093 dbSNP
rs1011199053 3094 dbSNP
rs1437957427 3099 dbSNP
rs1369892604 3101 dbSNP
rs1293645179 3106 dbSNP
rs1349752243 3120 dbSNP
rs116883689 3123 dbSNP
rs1047727952 3126 dbSNP
rs1361064169 3134 dbSNP
rs763986191 3136 dbSNP
rs1174191210 3138 dbSNP
rs757908167 3144 dbSNP
rs1407943379 3145 dbSNP
rs939451566 3150 dbSNP
rs1289921584 3151 dbSNP
rs1480255088 3158 dbSNP
rs117339023 3160 dbSNP
rs904193616 3162 dbSNP
rs895690935 3169 dbSNP
rs1012827082 3171 dbSNP
rs1250435350 3173 dbSNP
rs1182762326 3174 dbSNP
rs1227591303 3176 dbSNP
rs373974815 3177 dbSNP
rs1484453352 3180 dbSNP
rs569011461 3185 dbSNP
rs904442089 3186 dbSNP
rs576634315 3194 dbSNP
rs1269419146 3198 dbSNP
rs1320187492 3205 dbSNP
rs1349755924 3206 dbSNP
rs185721115 3207 dbSNP
rs1397766188 3211 dbSNP
rs1292622018 3221 dbSNP
rs77142187 3222 dbSNP
rs1469470099 3228 dbSNP
rs955759883 3231 dbSNP
rs1389674618 3243 dbSNP
rs1161376608 3245 dbSNP
rs1025471049 3250 dbSNP
rs1363673906 3252 dbSNP
rs1166072889 3258 dbSNP
rs987241033 3268 dbSNP
rs951292333 3274 dbSNP
rs1019122253 3275 dbSNP
rs1254499786 3280 dbSNP
rs984010156 3281 dbSNP
rs544668697 3284 dbSNP
rs190539929 3293 dbSNP
rs964911162 3320 dbSNP
rs1180659578 3323 dbSNP
rs909846676 3325 dbSNP
rs1254673972 3328 dbSNP
rs1393268947 3331 dbSNP
rs796327965 3342 dbSNP
rs1206229365 3346 dbSNP
rs1470707220 3347 dbSNP
rs1327842561 3351 dbSNP
rs964091622 3359 dbSNP
rs1246894273 3362 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000318833.3 | 3UTR | UUGGCACCCCUUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38226 Liver fibrosis 0.509 9.2e-3 0.476 1.5e-2 21 Click to see details
GSE19350 CNS germ cell tumors -0.601 1.9e-2 0.017 4.8e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells 0.425 2.2e-2 0.214 1.6e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.517 3.5e-2 0.473 5.1e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells -0.29 8.5e-2 -0.340 5.2e-2 24 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.449 1.1e-1 0.250 2.6e-1 9 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.145 2.4e-1 0.388 2.8e-2 25 Click to see details
GSE28544 Breast cancer 0.145 2.5e-1 0.119 2.9e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.113 3.2e-1 -0.152 2.6e-1 20 Click to see details
GSE21687 Ependynoma primary tumors -0.057 3.3e-1 0.053 3.4e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.072 3.7e-1 -0.204 1.6e-1 25 Click to see details
GSE32688 Pancreatic cancer -0.044 4.1e-1 -0.126 2.5e-1 32 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC -0.792 0 -0.509 0.05 11 Click to see details
KICH -0.929 0 -0.829 0.02 6 Click to see details
THCA -0.247 0.05 -0.290 0.03 44 Click to see details
STAD -0.421 0.07 -0.248 0.2 14 Click to see details
KIRC -0.627 0.09 -0.657 0.08 6 Click to see details
LIHC -0.188 0.16 -0.174 0.18 30 Click to see details
KIRP -0.319 0.18 -0.333 0.17 10 Click to see details
BRCA 0.266 0.21 0.209 0.27 11 Click to see details
PRAD 0.158 0.23 0.270 0.1 24 Click to see details
BLCA -0.259 0.27 -0.119 0.39 8 Click to see details
LUAD 0.246 0.3 0.071 0.44 7 Click to see details
LUSC -0.111 0.31 -0.190 0.2 22 Click to see details
HNSC -0.102 0.32 0.035 0.44 24 Click to see details
CHOL -0.206 0.37 -0.100 0.44 5 Click to see details
CHOL -0.206 0.37 -0.100 0.44 5 Click to see details
CHOL -0.206 0.37 -0.100 0.44 5 Click to see details
CHOL -0.206 0.37 -0.100 0.44 5 Click to see details
CHOL -0.206 0.37 -0.100 0.44 5 Click to see details
107 hsa-miR-100-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT105690 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT151558 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT167753 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT195380 CBFB core-binding factor beta subunit 2 2
MIRT283995 DNAJA2 DnaJ heat shock protein family (Hsp40) member A2 2 2
MIRT317145 E2F3 E2F transcription factor 3 2 4
MIRT380785 ZFP3 ZFP3 zinc finger protein 2 2
MIRT380927 ZNF264 zinc finger protein 264 2 2
MIRT441600 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT443896 NUDT3 nudix hydrolase 3 2 4
MIRT444030 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT444112 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444169 ZNF701 zinc finger protein 701 2 2
MIRT444366 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT444371 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT444517 ZNF525 zinc finger protein 525 2 2
MIRT444525 CNIH4 cornichon family AMPA receptor auxiliary protein 4 2 2
MIRT444529 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT444537 PHKB phosphorylase kinase regulatory subunit beta 2 2
MIRT444702 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT444717 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT444730 TMC7 transmembrane channel like 7 2 2
MIRT444777 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2 2
MIRT444802 TMEM251 transmembrane protein 251 2 2
MIRT444995 LRRC57 leucine rich repeat containing 57 2 2
MIRT445073 C16orf87 chromosome 16 open reading frame 87 2 2
MIRT445250 SEMA5A semaphorin 5A 2 2
MIRT445336 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT445426 TPT1 tumor protein, translationally-controlled 1 2 4
MIRT445469 TRIM13 tripartite motif containing 13 2 2
MIRT445646 NPY4R neuropeptide Y receptor Y4 2 2
MIRT445759 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT445838 SRSF11 serine and arginine rich splicing factor 11 2 2
MIRT445868 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 2 2
MIRT446368 STX16 syntaxin 16 2 2
MIRT446444 THYN1 thymocyte nuclear protein 1 2 2
MIRT446593 TASP1 taspase 1 2 2
MIRT446926 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT447121 SLFN5 schlafen family member 5 2 2
MIRT447196 CDCP1 CUB domain containing protein 1 2 2
MIRT447358 STOM stomatin 2 2
MIRT447361 FAM161B family with sequence similarity 161 member B 2 2
MIRT447374 NUP205 nucleoporin 205 2 2
MIRT447467 OSMR oncostatin M receptor 2 2
MIRT447606 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT447682 ASPA aspartoacylase 2 2
MIRT447715 ERP44 endoplasmic reticulum protein 44 2 2
MIRT447814 EMX1 empty spiracles homeobox 1 2 2
MIRT447855 RRP8 ribosomal RNA processing 8 2 4
MIRT447866 KIAA1244 ARFGEF family member 3 1 1
MIRT447890 STRIP2 striatin interacting protein 2 2 2
MIRT447916 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT447935 DUSP4 dual specificity phosphatase 4 2 2
MIRT448813 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT448927 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT449105 CREBRF CREB3 regulatory factor 2 2
MIRT449216 ZNHIT3 zinc finger HIT-type containing 3 2 2
MIRT449336 ACTBL2 actin, beta like 2 2 2
MIRT449675 SOX3 SRY-box 3 2 2
MIRT449724 POU2F1 POU class 2 homeobox 1 2 2
MIRT449768 PRAMEF7 PRAME family member 7 2 2
MIRT449804 PRAMEF8 PRAME family member 8 2 2
MIRT449850 BCL2L13 BCL2 like 13 2 2
MIRT449866 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT450067 SYT9 synaptotagmin 9 2 2
MIRT450197 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT450386 TENM4 teneurin transmembrane protein 4 2 2
MIRT450435 PAX8 paired box 8 2 2
MIRT450716 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT495906 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT497543 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT497630 ZNF576 zinc finger protein 576 2 2
MIRT497756 OXGR1 oxoglutarate receptor 1 2 2
MIRT498072 SLC25A12 solute carrier family 25 member 12 2 2
MIRT500542 XPO4 exportin 4 2 4
MIRT500848 SYPL1 synaptophysin like 1 2 4
MIRT511621 HIST1H3J histone cluster 1 H3 family member j 2 4
MIRT513745 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT535077 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT543133 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT544518 GTF2E2 general transcription factor IIE subunit 2 2 2
MIRT544666 MED19 mediator complex subunit 19 2 2
MIRT545407 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT547569 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548767 CNN3 calponin 3 2 2
MIRT551009 TRIM4 tripartite motif containing 4 2 2
MIRT555077 PURG purine rich element binding protein G 2 2
MIRT560753 ZNF616 zinc finger protein 616 2 2
MIRT563752 FOXO3 forkhead box O3 2 2
MIRT565531 SON SON DNA binding protein 2 2
MIRT613933 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT614433 TAZ tafazzin 2 2
MIRT622520 RAP2A RAP2A, member of RAS oncogene family 2 2
MIRT626037 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT648459 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT654982 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 4
MIRT689103 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT704259 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT711194 CXCL3 C-X-C motif chemokine ligand 3 2 2
MIRT713315 VLDLR very low density lipoprotein receptor 2 2
MIRT717266 BMPR2 bone morphogenetic protein receptor type 2 4 2
MIRT718248 CCDC18 coiled-coil domain containing 18 2 2
MIRT721944 NGRN neugrin, neurite outgrowth associated 2 2
MIRT721948 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT734969 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 3 0
MIRT735945 NME2 NME/NM23 nucleoside diphosphate kinase 2 0 0
MIRT737404 HOXA1 homeobox A1 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-100 Trichostatin A (TSA) NULL 444732 Microarray human pancreatic cancer cell line BxPC-3 19112422 2009 up-regulated
miR-100 Etoposide approved 36462 Microarray Normal human fibroblasts (AG01522) 19633716 2009 down-regulated
miR-100 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-100 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-100 Docetaxel approved 148124 Microarray human lung adenocarcinoma cells 22120675 2012 up-regulated
miR-100 Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-100 Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-100 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-100 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-100 Goserelin approved 47725 Microarray prostate 22674191 2012 up-regulated
miR-100 Glucocorticoid NULL NULL Quantitative real-time PCR Eosinophilic esophagitis 22815788 2012 up-regulated
miR-100 Glucocorticoid NULL NULL TaqMan low-density array Eosinophilic esophagitis 22815788 2012 up-regulated
miR-100 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 down-regulated
miR-100 17beta-estradiol (E2) approved 5757 Microarray rat breast 17700064 2007 down-regulated
miR-100 Budesonide approved 5281004 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-100 Propranolol approved 4946 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-100 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miR-100 Ethanol NULL 702 Microarray zebrafish embryos 22298809 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-100 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-100 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-100 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-100 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-100 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-mir-100 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-100 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-100 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-100-3p Taxane 9548828 sensitive High Prostate Cancer cell line (PC-3, PR200)
hsa-miR-100-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia leukemia stem cells
hsa-miR-100-3p Ponatinib 24826799 NSC758487 approved sensitive High Chronic Myelogenous Leukemia leukemia stem cells
hsa-miR-100-3p Docetaxel 148124 NSC628503 approved sensitive High Prostate Cancer cell line (PC-3)
hsa-miR-100-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-100-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-100-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-100-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (A375)
hsa-miR-100-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-100-3p Palbociclib 5330286 NSC758247 approved sensitive tissue (breast cancer)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-100-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-100-3p Pegylated interferon alpha+Ribavirin resistant tissue (chronic hepatitis C)
hsa-miR-100-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-100-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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