miRTarBase - #MIRT386434


—
pre-miRNA Information
pre-miRNA hsa-mir-4728   
Genomic Coordinates chr17: 39726495 - 39726561
Description Homo sapiens miR-4728 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4728-5p
Sequence 2| UGGGAGGGGAGAGGCAGCAAGCA |24
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1419589985 1 dbSNP
rs778443386 2 dbSNP
rs1275042409 3 dbSNP
rs748675090 6 dbSNP
rs772543431 17 dbSNP
rs773610056 18 dbSNP
rs747372658 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BQA97X miR-4728 Predictive Biomarker (PRD) Transcriptomic Data . . . .
Gene Information
Gene Symbol CCL22   
Synonyms A-152E5.1, ABCD-1, DC/B-CK, MDC, SCYA22, STCP-1
Description C-C motif chemokine ligand 22
Transcript NM_002990   
Expression
Putative miRNA Targets on CCL22
3'UTR of CCL22
(miRNA target sites are highlighted)		 
>CCL22|NM_002990|3'UTR
   1 AGAGCCTACTCTGATGACCGTGGCCTTGGCTCCTCCAGGAAGGCTCAGGAGCCCTACCTCCCTGCCATTATAGCTGCTCC
  81 CCGCCAGAAGCCTGTGCCAACTCTCTGCATTCCCTGATCTCCATCCCTGTGGCTGTCACCCTTGGTCACCTCCGTGCTGT
 161 CACTGCCATCTCCCCCCTGACCCCTCTAACCCATCCTCTGCCTCCCTCCCTGCAGTCAGAGGGTCCTGTTCCCATCAGCG
 241 ATTCCCCTGCTTAAACCCTTCCATGACTCCCCACTGCCCTAAGCTGAGGTCAGTCTCCCAAGCCTGGCATGTGGCCCTCT
 321 GGATCTGGGTTCCATCTCTGTCTCCAGCCTGCCCACTTCCCTTCATGAATGTTGGGTTCTAGCTCCCTGTTCTCCAAACC
 401 CATACTACACATCCCACTTCTGGGTCTTTGCCTGGGATGTTGCTGACACCCAGAAAGTCCCACCACCTGCACATGTGTAG
 481 CCCCACCAGCCCTCCAAGGCATTGCTCGCCCAAGCAGCTGGTAATTCCATTTCATGTATTAGATGTCCCCTGGCCCTCTG
 561 TCCCCTCTTAATAACCCTAGTCACAGTCTCCGCAGATTCTTGGGATTTGGGGGTTTTCTCCCCCACCTCTCCACTAGTTG
 641 GACCAAGGTTTCTAGCTAAGTTACTCTAGTCTCCAAGCCTCTAGCATAGAGCACTGCAGACAGGCCCTGGCTCAGAATCA
 721 GAGCCCAGAAAGTGGCTGCAGACAAAATCAATAAAACTAATGTCCCTCCCCTCTCCCTGCCAAAAGGCAGTTACATATCA
 801 ATACAGAGACTCAAGGTCACTAGAAATGGGCCAGCTGGGTCAATGTGAAGCCCCAAATTTGCCCAGATTCACCTTTCTTC
 881 CCCCACTCCCTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTCACCCACGCTGGAGTGCAATGGTGTGGTCTTG
 961 GCTTATTGAAGCCTCTGCCTCCTGGGTTCAAGTGATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTTCCTG
1041 CTACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGCTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGT
1121 CCTCAGGTAATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACAGTGCCTGGCCTCTTCCCTCT
1201 CCCCACCCCCCCCCCAACTTTTTTTTTTTTTTATGGCAGGGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGAT
1281 CTCGGCTCACTACAACCTCGACCTCCTGGGTTCAAGCGATTCTCCCACCCCAGCCTCCCAAGTAGCTGGGATTACAGGTG
1361 TGTGCCACTACGGCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCC
1441 TGACCTCAAGTGATCCACCTTCCTTGTGCTCCCAAAGTGCTGAGATTACAGGCGTGAGCTATCACACCCAGCCTCCCCCT
1521 TTTTTTCCTAATAGGAGACTCCTGTACCTTTCTTCGTTTTACCTATGTGTCGTGTCTGCTTACATTTCCTTCTCCCCTCA
1601 GGCTTTTTTTGGGTGGTCCTCCAACCTCCAATACCCAGGCCTGGCCTCTTCAGAGTACCCCCCATTCCACTTTCCCTGCC
1681 TCCTTCCTTAAATAGCTGACAATCAAATTCATGCTATGGTGTGAAAGACTACCTTTGACTTGGTATTATAAGCTGGAGTT
1761 ATATATGTATTTGAAAACAGAGTAAATACTTAAGAGGCCAAATAGATGAATGGAAGAATTTTAGGAACTGTGAGAGGGGG
1841 ACAAGGTGGAGCTTTCCTGGCCCTGGGAGGAAGCTGGCTGTGGTAGCGTAGCGCTCTCTCTCTCTGTCTGTGGCAGGAGG
1921 CAAAGAGTAGGGTGTAATTGAGTGAAGGAATCCTGGGTAGAGACCATTCTCAGGTGGTTGGGCCAGGCTAAAGACTGGGA
2001 TTTGGGTCTATCTATGCCTTTCTGGCTGATTTTTGTAGAGACGGGGTTTTGCCATGTTACCCAGGCTGGTCTCAAACTCC
2081 TGGGCTCAAGCGATCCTCCTGGCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACTGCGCCTGGCTTCCTCTT
2161 CCTCTTGAGAAATATTCTTTTCATACAGCAAGTATGGGACAGCAGTGTCCCAGGTAAAGGACATAAATGTTACAAGTGTC
2241 TGGTCCTTTCTGAGGGAGGCTGGTGCCGCTCTGCAGGGTATTTGAACCTGTGGAATTGGAGGAGGCCATTTCACTCCCTG
2321 AACCCAGCCTGACAAATCACAGTGAGAATGTTCACCTTATAGGCTTGCTGTGGGGCTCAGGTTGAAAGTGTGGGGAGTGA
2401 CACTGCCTAGGCATCCAGCTCAGTGTCATCCAGGGCCTGTGTCCCTCCCGAACCCAGGGTCAACCTGCCTACCACAGGCA
2481 CTAGAAGGACGAATCTGCCTACTGCCCATGAACGGGGCCCTCAAGCGTCCTGGGATCTCCTTCTCCCTCCTGTCCTGTCC
2561 TTGCCCCTCAGGACTGCTGGAAAATAAATCCTTTAAAATAGTAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acgaAC-GA-CGGAGAGGGGAGGGu 5'
              || || ||||||:|||||:| 
Target 5' acagTGCCTGGCCTCTTCCCTCTCc 3'
 1178 - 1202 159.00 -29.30
2 
miRNA  3' acgaacGACGGAGAGGGGAGGGu 5'
                ||||||   ||||||| 
Target 5' catcctCTGCCT---CCCTCCCt 3'
 192 - 211 158.00 -23.30
3 
miRNA  3' acgaacgaCGGAGA-GGGGAGGGu 5'
                  |||| | :||||||| 
Target 5' catccaggGCCTGTGTCCCTCCCg 3'
 2427 - 2450 155.00 -24.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30104339 6 COSMIC
COSN30492270 17 COSMIC
COSN30449873 33 COSMIC
COSN26969624 44 COSMIC
COSN29132791 57 COSMIC
COSN30134519 84 COSMIC
COSN15661734 98 COSMIC
COSN21182939 241 COSMIC
COSN16855816 323 COSMIC
COSN1701209 407 COSMIC
COSN26689101 846 COSMIC
COSN28198189 886 COSMIC
COSN27341872 1207 COSMIC
COSN19194361 1218 COSMIC
COSN22233395 1220 COSMIC
COSN23952516 1417 COSMIC
COSN15660767 1593 COSMIC
COSN5177013 1653 COSMIC
COSN8503003 1847 COSMIC
COSN23161016 1895 COSMIC
COSN15025528 1945 COSMIC
COSN8503004 2158 COSMIC
COSN25324080 2514 COSMIC
COSN15367203 2533 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs746610367 3 dbSNP
rs201050913 6 dbSNP
rs776190001 8 dbSNP
rs759032926 12 dbSNP
rs1406401917 14 dbSNP
rs1455898839 18 dbSNP
rs765205372 20 dbSNP
rs775459835 21 dbSNP
rs757253583 34 dbSNP
rs1432496110 39 dbSNP
rs1330422688 52 dbSNP
rs1037443738 57 dbSNP
rs1030098920 59 dbSNP
rs953083722 63 dbSNP
rs530767668 74 dbSNP
rs867197880 75 dbSNP
rs1291118175 76 dbSNP
rs552444943 83 dbSNP
rs190203232 84 dbSNP
rs963363313 85 dbSNP
rs1463223763 86 dbSNP
rs1421669264 87 dbSNP
rs974388884 92 dbSNP
rs918818794 114 dbSNP
rs1424311248 115 dbSNP
rs750114390 118 dbSNP
rs34722018 125 dbSNP
rs532498018 149 dbSNP
rs1251477779 150 dbSNP
rs1471851520 151 dbSNP
rs1221962074 154 dbSNP
rs547490406 155 dbSNP
rs981548798 158 dbSNP
rs1197526611 161 dbSNP
rs1179425909 163 dbSNP
rs1409414286 164 dbSNP
rs928743371 169 dbSNP
rs937388996 173 dbSNP
rs550822947 175 dbSNP
rs1055732358 177 dbSNP
rs564192415 178 dbSNP
rs914612575 178 dbSNP
rs1173291935 180 dbSNP
rs1443560027 182 dbSNP
rs947373511 200 dbSNP
rs1330905167 204 dbSNP
rs1434888732 205 dbSNP
rs1466245522 206 dbSNP
rs1041664141 207 dbSNP
rs903070641 214 dbSNP
rs1424299859 222 dbSNP
rs1194104239 235 dbSNP
rs532883204 240 dbSNP
rs1411476387 241 dbSNP
rs1223580811 243 dbSNP
rs1177657327 258 dbSNP
rs1457892065 267 dbSNP
rs1051556231 277 dbSNP
rs1252564132 288 dbSNP
rs1207334712 289 dbSNP
rs1312187476 304 dbSNP
rs1280044929 311 dbSNP
rs1279934555 316 dbSNP
rs376815927 320 dbSNP
rs1237019953 329 dbSNP
rs1375110605 330 dbSNP
rs888874177 333 dbSNP
rs1366764084 335 dbSNP
rs1447824287 343 dbSNP
rs565764409 345 dbSNP
rs1375728495 349 dbSNP
rs1217438723 351 dbSNP
rs1301176224 356 dbSNP
rs1299205436 366 dbSNP
rs1465607134 366 dbSNP
rs1350166220 373 dbSNP
rs1007348717 375 dbSNP
rs548131334 381 dbSNP
rs1235288149 383 dbSNP
rs35849109 390 dbSNP
rs1378272568 394 dbSNP
rs1177712330 401 dbSNP
rs1482264109 402 dbSNP
rs1419302058 403 dbSNP
rs963098150 418 dbSNP
rs1252224360 421 dbSNP
rs170360 451 dbSNP
rs569910237 455 dbSNP
rs1025911725 458 dbSNP
rs951609426 464 dbSNP
rs749486222 478 dbSNP
rs537248925 482 dbSNP
rs1396347646 486 dbSNP
rs768981907 497 dbSNP
rs559162996 501 dbSNP
rs1352086941 504 dbSNP
rs1454388322 505 dbSNP
rs1219857713 508 dbSNP
rs1290545606 509 dbSNP
rs1310834409 511 dbSNP
rs1395577432 522 dbSNP
rs1380017476 525 dbSNP
rs928774277 528 dbSNP
rs1416553417 533 dbSNP
rs41426048 537 dbSNP
rs1431277982 539 dbSNP
rs577479773 545 dbSNP
rs1454108627 546 dbSNP
rs1365231195 559 dbSNP
rs1162221699 565 dbSNP
rs991572870 568 dbSNP
rs1417982389 571 dbSNP
rs1189376533 590 dbSNP
rs914624047 592 dbSNP
rs947422489 593 dbSNP
rs1206155457 597 dbSNP
rs1487042487 606 dbSNP
rs1263945983 609 dbSNP
rs1349096540 610 dbSNP
rs1434143686 614 dbSNP
rs1295203208 615 dbSNP
rs1216867554 624 dbSNP
rs149238009 625 dbSNP
rs1297480960 628 dbSNP
rs1042087094 634 dbSNP
rs924552869 636 dbSNP
rs1295284677 638 dbSNP
rs1386906470 639 dbSNP
rs1291525498 642 dbSNP
rs774576791 648 dbSNP
rs1051672820 657 dbSNP
rs1056063094 675 dbSNP
rs1457109673 679 dbSNP
rs1418045645 682 dbSNP
rs1166556826 690 dbSNP
rs1476549478 694 dbSNP
rs1423612340 709 dbSNP
rs552674228 718 dbSNP
rs749216189 720 dbSNP
rs1007379596 733 dbSNP
rs1265719999 735 dbSNP
rs1209544451 743 dbSNP
rs1469123502 745 dbSNP
rs1275269204 758 dbSNP
rs1196882448 763 dbSNP
rs1317339190 767 dbSNP
rs1340250335 768 dbSNP
rs1216553231 777 dbSNP
rs1274082982 781 dbSNP
rs1270803331 788 dbSNP
rs1037486603 796 dbSNP
rs898884234 803 dbSNP
rs548515558 805 dbSNP
rs1386006027 806 dbSNP
rs377523389 811 dbSNP
rs1327482400 814 dbSNP
rs541938054 816 dbSNP
rs144628416 821 dbSNP
rs1468522522 822 dbSNP
rs78507648 834 dbSNP
rs1035901630 835 dbSNP
rs1376423120 839 dbSNP
rs958888951 851 dbSNP
rs992037787 857 dbSNP
rs1255169571 863 dbSNP
rs1177037714 865 dbSNP
rs1021729542 867 dbSNP
rs969167490 868 dbSNP
rs896022967 872 dbSNP
rs977456456 873 dbSNP
rs1412787740 882 dbSNP
rs1403433571 885 dbSNP
rs1014270305 886 dbSNP
rs1042088561 888 dbSNP
rs1456666510 889 dbSNP
rs1305312414 890 dbSNP
rs11405534 891 dbSNP
rs1231121021 891 dbSNP
rs1397296053 891 dbSNP
rs1400752455 891 dbSNP
rs1435841903 891 dbSNP
rs1319891325 892 dbSNP
rs1439324181 893 dbSNP
rs1363131697 894 dbSNP
rs1276661895 909 dbSNP
rs1271058355 912 dbSNP
rs1378862025 917 dbSNP
rs148490868 921 dbSNP
rs1254048103 922 dbSNP
rs1275467321 925 dbSNP
rs1336057936 927 dbSNP
rs933304717 936 dbSNP
rs1265636802 937 dbSNP
rs987406390 946 dbSNP
rs910456238 947 dbSNP
rs943198692 948 dbSNP
rs1279745546 951 dbSNP
rs1443790074 953 dbSNP
rs1338222075 958 dbSNP
rs1311692275 971 dbSNP
rs1037917818 973 dbSNP
rs1296808307 978 dbSNP
rs1419469634 987 dbSNP
rs1409054300 993 dbSNP
rs1160484322 1000 dbSNP
rs141775982 1001 dbSNP
rs1367995592 1002 dbSNP
rs929015410 1008 dbSNP
rs1188681232 1014 dbSNP
rs1485994687 1018 dbSNP
rs564371404 1019 dbSNP
rs1214237405 1028 dbSNP
rs1236582290 1045 dbSNP
rs371015520 1048 dbSNP
rs558501857 1049 dbSNP
rs528352627 1050 dbSNP
rs546907714 1052 dbSNP
rs1353748995 1058 dbSNP
rs1292138840 1068 dbSNP
rs1276833932 1080 dbSNP
rs1357979275 1080 dbSNP
rs576653011 1081 dbSNP
rs182510464 1082 dbSNP
rs1320639291 1085 dbSNP
rs1403829984 1090 dbSNP
rs771562025 1093 dbSNP
rs1165817601 1094 dbSNP
rs74390076 1099 dbSNP
rs1418308589 1111 dbSNP
rs1456584992 1112 dbSNP
rs1156925995 1121 dbSNP
rs759010451 1124 dbSNP
rs1382874826 1127 dbSNP
rs1191454275 1130 dbSNP
rs1402566622 1133 dbSNP
rs548229280 1135 dbSNP
rs1358753393 1137 dbSNP
rs1272134892 1140 dbSNP
rs569822305 1141 dbSNP
rs1213828379 1167 dbSNP
rs1446134215 1171 dbSNP
rs1275717822 1172 dbSNP
rs1214526629 1175 dbSNP
rs1341986731 1176 dbSNP
rs1272298162 1183 dbSNP
rs1295432755 1186 dbSNP
rs1370591445 1187 dbSNP
rs1326787250 1191 dbSNP
rs1463172540 1198 dbSNP
rs1398226561 1199 dbSNP
rs1184008934 1201 dbSNP
rs903166962 1201 dbSNP
rs1356523294 1204 dbSNP
rs1476907240 1204 dbSNP
rs1193914190 1205 dbSNP
rs1252035117 1205 dbSNP
rs1000265398 1206 dbSNP
rs1491331252 1206 dbSNP
rs373811356 1206 dbSNP
rs796165453 1206 dbSNP
rs796255674 1206 dbSNP
rs1394278227 1207 dbSNP
rs369352628 1207 dbSNP
rs57450696 1207 dbSNP
rs148517008 1208 dbSNP
rs57186204 1208 dbSNP
rs375455988 1209 dbSNP
rs867546666 1209 dbSNP
rs1287082368 1210 dbSNP
rs1330899609 1211 dbSNP
rs1353298846 1212 dbSNP
rs796911439 1212 dbSNP
rs537614594 1213 dbSNP
rs1301117221 1214 dbSNP
rs796311331 1214 dbSNP
rs1313334233 1215 dbSNP
rs1270536632 1216 dbSNP
rs866363216 1217 dbSNP
rs1028915978 1218 dbSNP
rs1260464790 1219 dbSNP
rs1421203776 1219 dbSNP
rs1487495103 1219 dbSNP
rs34460030 1219 dbSNP
rs397959241 1219 dbSNP
rs60232455 1219 dbSNP
rs1205150285 1220 dbSNP
rs1277336293 1226 dbSNP
rs1440271510 1233 dbSNP
rs1476303767 1234 dbSNP
rs1257949604 1235 dbSNP
rs1472180400 1236 dbSNP
rs1293794500 1237 dbSNP
rs1416496992 1242 dbSNP
rs1179885086 1247 dbSNP
rs1382533263 1248 dbSNP
rs223822 1254 dbSNP
rs1453998583 1255 dbSNP
rs1346591052 1258 dbSNP
rs1162241953 1270 dbSNP
rs552858868 1276 dbSNP
rs1419260202 1277 dbSNP
rs1190739579 1282 dbSNP
rs1427210044 1284 dbSNP
rs139915589 1285 dbSNP
rs1424557249 1286 dbSNP
rs187546931 1290 dbSNP
rs1433032501 1293 dbSNP
rs1271498189 1296 dbSNP
rs1213183330 1298 dbSNP
rs1335577971 1300 dbSNP
rs1315081451 1301 dbSNP
rs1324545402 1302 dbSNP
rs1294672923 1313 dbSNP
rs1376442545 1317 dbSNP
rs223823 1318 dbSNP
rs1327290345 1323 dbSNP
rs1460557536 1329 dbSNP
rs1394611903 1337 dbSNP
rs1166397668 1346 dbSNP
rs762496411 1356 dbSNP
rs1460924809 1358 dbSNP
rs1338006246 1361 dbSNP
rs1194418934 1363 dbSNP
rs1003144529 1367 dbSNP
rs1430645700 1372 dbSNP
rs1035932830 1373 dbSNP
rs1193263448 1377 dbSNP
rs1469028414 1380 dbSNP
rs1254966508 1388 dbSNP
rs1194144970 1390 dbSNP
rs191695691 1397 dbSNP
rs1273668732 1400 dbSNP
rs223824 1401 dbSNP
rs1236033723 1404 dbSNP
rs113088331 1405 dbSNP
rs1439728786 1407 dbSNP
rs1280647226 1408 dbSNP
rs1327396320 1416 dbSNP
rs1482593335 1417 dbSNP
rs1022176162 1430 dbSNP
rs968905249 1434 dbSNP
rs535448121 1443 dbSNP
rs977946455 1449 dbSNP
rs1438259926 1454 dbSNP
rs1198096657 1462 dbSNP
rs1173344850 1465 dbSNP
rs751278557 1466 dbSNP
rs1452734679 1468 dbSNP
rs1175729795 1469 dbSNP
rs1437292819 1478 dbSNP
rs1395863262 1481 dbSNP
rs183969989 1483 dbSNP
rs1251273045 1487 dbSNP
rs1031741394 1494 dbSNP
rs954720555 1495 dbSNP
rs1277938989 1499 dbSNP
rs1233272779 1505 dbSNP
rs1348229949 1507 dbSNP
rs1276215695 1509 dbSNP
rs987442266 1510 dbSNP
rs910492047 1513 dbSNP
rs943244045 1518 dbSNP
rs1166445083 1520 dbSNP
rs1393662988 1520 dbSNP
rs1399094123 1523 dbSNP
rs1435694202 1526 dbSNP
rs1397171048 1527 dbSNP
rs139702353 1533 dbSNP
rs920458542 1543 dbSNP
rs1469781334 1545 dbSNP
rs149762298 1556 dbSNP
rs1368110914 1557 dbSNP
rs557651869 1564 dbSNP
rs929153046 1565 dbSNP
rs188976305 1572 dbSNP
rs1255309112 1573 dbSNP
rs1209935412 1576 dbSNP
rs781226024 1578 dbSNP
rs1303534819 1583 dbSNP
rs750417868 1585 dbSNP
rs1280430482 1593 dbSNP
rs756205259 1595 dbSNP
rs1054677448 1601 dbSNP
rs151292920 1604 dbSNP
rs57753363 1604 dbSNP
rs1279688968 1609 dbSNP
rs1229694777 1612 dbSNP
rs894738918 1615 dbSNP
rs1293189763 1619 dbSNP
rs1415882769 1625 dbSNP
rs1339903366 1626 dbSNP
rs1316595468 1630 dbSNP
rs1400354018 1632 dbSNP
rs1385926610 1635 dbSNP
rs1209166105 1649 dbSNP
rs779983435 1655 dbSNP
rs1415642748 1658 dbSNP
rs1459909707 1658 dbSNP
rs540151675 1664 dbSNP
rs1467181099 1671 dbSNP
rs374136264 1680 dbSNP
rs999018780 1691 dbSNP
rs1190744187 1694 dbSNP
rs1446138012 1710 dbSNP
rs1284485067 1713 dbSNP
rs145699540 1720 dbSNP
rs1031772317 1728 dbSNP
rs72786863 1741 dbSNP
rs371730426 1751 dbSNP
rs563410307 1759 dbSNP
rs1017585225 1765 dbSNP
rs530890537 1766 dbSNP
rs973767943 1768 dbSNP
rs1268846180 1780 dbSNP
rs1430453923 1781 dbSNP
rs1327285528 1783 dbSNP
rs1322777921 1798 dbSNP
rs1392858026 1802 dbSNP
rs779241518 1803 dbSNP
rs1325915845 1808 dbSNP
rs1461952385 1814 dbSNP
rs1415870291 1815 dbSNP
rs1165984704 1816 dbSNP
rs1474948420 1823 dbSNP
rs1242437461 1824 dbSNP
rs867294249 1826 dbSNP
rs1466810071 1835 dbSNP
rs983220446 1839 dbSNP
rs1213756381 1844 dbSNP
rs1324094059 1847 dbSNP
rs121565 1850 dbSNP
rs1380159638 1853 dbSNP
rs1297361646 1858 dbSNP
rs1340523582 1862 dbSNP
rs1300216305 1864 dbSNP
rs767573623 1865 dbSNP
rs1439006834 1873 dbSNP
rs1370515579 1878 dbSNP
rs570949865 1879 dbSNP
rs528732169 1885 dbSNP
rs772454035 1888 dbSNP
rs946382452 1889 dbSNP
rs1336767862 1893 dbSNP
rs1170183374 1894 dbSNP
rs1394095658 1894 dbSNP
rs376775833 1894 dbSNP
rs547269329 1894 dbSNP
rs1193759723 1896 dbSNP
rs1489161578 1897 dbSNP
rs1230622541 1900 dbSNP
rs140558762 1903 dbSNP
rs1438844644 1907 dbSNP
rs569213575 1920 dbSNP
rs1063696 1921 dbSNP
rs1277292339 1922 dbSNP
rs904742843 1926 dbSNP
rs999449915 1932 dbSNP
rs535406932 1933 dbSNP
rs920304966 1934 dbSNP
rs890554711 1939 dbSNP
rs373590059 1955 dbSNP
rs1009021779 1961 dbSNP
rs1017699697 1963 dbSNP
rs965097225 1965 dbSNP
rs994836764 1966 dbSNP
rs1297616970 1972 dbSNP
rs1371316917 1972 dbSNP
rs750721247 1975 dbSNP
rs557018124 1987 dbSNP
rs1371073734 1990 dbSNP
rs950623536 1994 dbSNP
rs1187198880 1997 dbSNP
rs1432595579 1997 dbSNP
rs4784800 2003 dbSNP
rs1476444508 2006 dbSNP
rs541594277 2020 dbSNP
rs960525786 2027 dbSNP
rs990550354 2036 dbSNP
rs1387233450 2043 dbSNP
rs1176113720 2044 dbSNP
rs192464791 2045 dbSNP
rs1209244866 2046 dbSNP
rs1290250459 2056 dbSNP
rs1315293140 2058 dbSNP
rs1306457559 2069 dbSNP
rs1351073110 2072 dbSNP
rs1385148922 2091 dbSNP
rs946386380 2092 dbSNP
rs1043373020 2093 dbSNP
rs926202255 2099 dbSNP
rs774861075 2101 dbSNP
rs1467315840 2102 dbSNP
rs149014236 2104 dbSNP
rs1157787925 2112 dbSNP
rs1457293299 2133 dbSNP
rs1413471103 2134 dbSNP
rs890668832 2135 dbSNP
rs944839348 2137 dbSNP
rs658559 2139 dbSNP
rs900557047 2146 dbSNP
rs540429975 2147 dbSNP
rs555206428 2148 dbSNP
rs1260329824 2152 dbSNP
rs1216650910 2153 dbSNP
rs1210464663 2157 dbSNP
rs1271305474 2159 dbSNP
rs1231380660 2162 dbSNP
rs1354673587 2176 dbSNP
rs1313250646 2177 dbSNP
rs1408924927 2178 dbSNP
rs41466149 2187 dbSNP
rs1027621167 2188 dbSNP
rs111566579 2193 dbSNP
rs1189259754 2196 dbSNP
rs1435316056 2200 dbSNP
rs751280873 2205 dbSNP
rs1411947463 2215 dbSNP
rs1390212501 2216 dbSNP
rs1162101852 2222 dbSNP
rs1461432347 2224 dbSNP
rs1369545333 2239 dbSNP
rs1167398484 2246 dbSNP
rs1417863951 2251 dbSNP
rs1160610078 2264 dbSNP
rs544125464 2268 dbSNP
rs183599855 2269 dbSNP
rs1466366771 2270 dbSNP
rs41416644 2277 dbSNP
rs1213141697 2285 dbSNP
rs1310741924 2288 dbSNP
rs1246842810 2291 dbSNP
rs1004795336 2294 dbSNP
rs1294504475 2298 dbSNP
rs1415231145 2300 dbSNP
rs41494547 2303 dbSNP
rs375730262 2306 dbSNP
rs1323386814 2310 dbSNP
rs545980376 2324 dbSNP
rs1225423605 2325 dbSNP
rs1392139936 2326 dbSNP
rs1295824575 2330 dbSNP
rs960555001 2334 dbSNP
rs990582823 2341 dbSNP
rs1460879163 2342 dbSNP
rs761660962 2344 dbSNP
rs1372870489 2352 dbSNP
rs1169551945 2361 dbSNP
rs950374181 2368 dbSNP
rs1023822605 2375 dbSNP
rs564609618 2376 dbSNP
rs1451620499 2383 dbSNP
rs1317643887 2387 dbSNP
rs528637308 2396 dbSNP
rs1233799465 2399 dbSNP
rs187177530 2401 dbSNP
rs1452280526 2405 dbSNP
rs147729648 2407 dbSNP
rs1479585818 2411 dbSNP
rs1211968749 2414 dbSNP
rs1232662937 2419 dbSNP
rs1479918891 2422 dbSNP
rs979517442 2423 dbSNP
rs1179517054 2436 dbSNP
rs1250581557 2437 dbSNP
rs1300775163 2443 dbSNP
rs1232014300 2450 dbSNP
rs529591010 2451 dbSNP
rs1171352809 2455 dbSNP
rs1041959354 2464 dbSNP
rs1302673690 2466 dbSNP
rs1390178981 2469 dbSNP
rs223825 2472 dbSNP
rs1373980375 2477 dbSNP
rs1434953845 2481 dbSNP
rs191686907 2486 dbSNP
rs1478441141 2491 dbSNP
rs557527318 2492 dbSNP
rs1179737347 2497 dbSNP
rs912135757 2504 dbSNP
rs1352568036 2507 dbSNP
rs1250945148 2514 dbSNP
rs1444268281 2515 dbSNP
rs1483926288 2519 dbSNP
rs1277873829 2521 dbSNP
rs1199526488 2525 dbSNP
rs944870544 2528 dbSNP
rs1236246056 2531 dbSNP
rs530786381 2533 dbSNP
rs1289550209 2536 dbSNP
rs1039180254 2538 dbSNP
rs183824698 2551 dbSNP
rs900591741 2553 dbSNP
rs376864618 2554 dbSNP
rs1404618163 2560 dbSNP
rs552658690 2565 dbSNP
rs1301351656 2566 dbSNP
rs1412735576 2578 dbSNP
rs1350237127 2580 dbSNP
rs1473492376 2583 dbSNP
rs1235332901 2586 dbSNP
rs886465010 2591 dbSNP
rs1186558435 2599 dbSNP
rs1442707337 2601 dbSNP
rs1004824716 2602 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acgaacgacGGAGAGGGGAGGGu 5'
                   |||| ||:||||| 
Target 5' ---------CCUCCCCUCUCCCu 3'
 		1 - 14
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084044. RNA binding protein: AGO2. Condition:CLIP_noarsenite_rep3 HITS-CLIP data was present in GSM1084065. RNA binding protein: AGO2. Condition:CLIP_emetine_AbnovaAb HITS-CLIP data was present in GSM1084073. RNA binding protein: AGO2. Condition:CLIP_hippuristanol_rep1_AbnovaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903829
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_a
Location of target site NM_002990 | 3UTR | CCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903830
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / CTLTD_shCTL_b
Location of target site NM_002990 | 3UTR | CCGCCCACCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_002990 | 3UTR | AGGCUGGUCUCAAACUCCUGGGCUCAAGCGAUCCUCCUGGCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_002990 | 3UTR | UGGGUUCAAGCGAUUCUCCCACCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_002990 | 3UTR | CUGGUCUCAAACUCCUGGGCUCAAGCGAUCCUCCUGGCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_002990 | 3UTR | CUGGGCUCAAGCGAUCCUCCUGGCUCAGCCUCCCAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_002990 | 3UTR | UUCUCCCACCCCAGCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_002990 | 3UTR | AAACUCCUGGGCUCAAGCGAUCCUCCUGGCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM1084044
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_noarsenite_rep3
Location of target site ENST00000219235.4 | 3UTR | GGCUCAGCCUCCCAAAGUGCUGGGAUUACAGGCGUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 10 for dataset GSM1084065
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_emetine_AbnovaAb
Location of target site ENST00000219235.4 | 3UTR | GGCUCAGCCUCCCAAAGUGCUGGGAUUACAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 11 for dataset GSM1084073
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_hippuristanol_rep1_AbnovaAb
Location of target site ENST00000219235.4 | 3UTR | GCUCAGCCUCCCAAAGU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 12 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000219235.4 | 3UTR | CCUCCCCUCUCCCUGCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
612 hsa-miR-4728-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT083283 ZCCHC3 zinc finger CCHC-type containing 3 2 4
MIRT112203 BTG2 BTG anti-proliferation factor 2 2 2
MIRT115286 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT115527 MAZ MYC associated zinc finger protein 2 2
MIRT119866 NRBP1 nuclear receptor binding protein 1 2 2
MIRT131979 IER5 immediate early response 5 2 4
MIRT149428 CARM1 coactivator associated arginine methyltransferase 1 2 2
MIRT160081 TET3 tet methylcytosine dioxygenase 3 2 2
MIRT177169 ARL5B ADP ribosylation factor like GTPase 5B 2 4
MIRT260103 KLHL21 kelch like family member 21 2 2
MIRT260351 XRCC6 X-ray repair cross complementing 6 2 6
MIRT266417 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT294650 ZNF548 zinc finger protein 548 2 2
MIRT339335 SESN2 sestrin 2 2 2
MIRT386434 CCL22 C-C motif chemokine ligand 22 2 4
MIRT441468 BEST3 bestrophin 3 2 2
MIRT442283 CCDC108 cilia and flagella associated protein 65 2 4
MIRT446756 ZNF491 zinc finger protein 491 2 2
MIRT449229 RAD51B RAD51 paralog B 2 2
MIRT451011 MYH14 myosin heavy chain 14 2 8
MIRT451099 ZNF584 zinc finger protein 584 2 2
MIRT451412 TJP3 tight junction protein 3 2 4
MIRT451566 CIAPIN1 cytokine induced apoptosis inhibitor 1 2 2
MIRT451742 CES3 carboxylesterase 3 2 2
MIRT451949 TMPRSS5 transmembrane protease, serine 5 2 2
MIRT452324 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT452417 QDPR quinoid dihydropteridine reductase 2 2
MIRT452569 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452863 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452928 DISC1 disrupted in schizophrenia 1 2 2
MIRT453054 TANGO2 transport and golgi organization 2 homolog 2 4
MIRT453104 HOXC4 homeobox C4 2 2
MIRT453243 FTSJ3 FtsJ RNA methyltransferase homolog 3 2 2
MIRT453302 ZNF394 zinc finger protein 394 2 2
MIRT453335 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT453545 PRR12 proline rich 12 2 2
MIRT453600 ZNF557 zinc finger protein 557 2 2
MIRT453801 KBTBD12 kelch repeat and BTB domain containing 12 2 2
MIRT453993 CECR1 adenosine deaminase 2 2 2
MIRT454090 TMEM209 transmembrane protein 209 2 2
MIRT454212 HLA-A major histocompatibility complex, class I, A 2 2
MIRT454293 ZNF134 zinc finger protein 134 2 2
MIRT454456 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT454475 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) 2 2
MIRT454661 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT454789 STOML3 stomatin like 3 2 2
MIRT455125 TBC1D25 TBC1 domain family member 25 2 2
MIRT455314 TTLL9 tubulin tyrosine ligase like 9 2 2
MIRT456123 SAMD10 sterile alpha motif domain containing 10 2 2
MIRT456152 TTF2 transcription termination factor 2 2 2
MIRT456304 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 2 2
MIRT456475 SERAC1 serine active site containing 1 2 2
MIRT456558 TOMM20 translocase of outer mitochondrial membrane 20 2 2
MIRT456724 TMEM239 transmembrane protein 239 2 4
MIRT457390 CAMK2A calcium/calmodulin dependent protein kinase II alpha 2 2
MIRT457427 NOL10 nucleolar protein 10 2 2
MIRT457492 SLC35F6 solute carrier family 35 member F6 2 2
MIRT458004 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT458136 TLCD2 TLC domain containing 2 2 2
MIRT458596 KCTD2 potassium channel tetramerization domain containing 2 2 2
MIRT459031 ZNF490 zinc finger protein 490 2 4
MIRT459124 FADS6 fatty acid desaturase 6 2 2
MIRT459322 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459393 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459421 FAM83B family with sequence similarity 83 member B 2 2
MIRT459498 TACR3 tachykinin receptor 3 2 2
MIRT459566 NLGN2 neuroligin 2 2 2
MIRT459605 KCNK3 potassium two pore domain channel subfamily K member 3 2 2
MIRT459667 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT459917 HHIP hedgehog interacting protein 2 4
MIRT459983 RFT1 RFT1 homolog 2 2
MIRT460487 FAM105A family with sequence similarity 105 member A 2 6
MIRT460611 FEM1A fem-1 homolog A 2 2
MIRT460650 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT460679 RNF157 ring finger protein 157 2 2
MIRT460711 FN3KRP fructosamine 3 kinase related protein 2 2
MIRT460880 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT460927 NOA1 nitric oxide associated 1 2 4
MIRT461080 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT461597 DPH2 DPH2 homolog 2 2
MIRT461861 ZNF317 zinc finger protein 317 2 2
MIRT462185 ACADL acyl-CoA dehydrogenase, long chain 2 2
MIRT462452 GCDH glutaryl-CoA dehydrogenase 2 2
MIRT462994 ZNF740 zinc finger protein 740 2 2
MIRT463327 ZFHX3 zinc finger homeobox 3 2 2
MIRT463859 WNT7B Wnt family member 7B 2 2
MIRT464061 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT464318 UST uronyl 2-sulfotransferase 2 2
MIRT464823 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465409 TP53 tumor protein p53 2 2
MIRT466082 TMEM184C transmembrane protein 184C 2 2
MIRT466525 TBXA2R thromboxane A2 receptor 2 2
MIRT467079 SRRD SRR1 domain containing 2 2
MIRT467153 SREBF2 sterol regulatory element binding transcription factor 2 2 2
MIRT468101 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT468289 SFT2D2 SFT2 domain containing 2 2 4
MIRT468763 SCD stearoyl-CoA desaturase 2 2
MIRT468915 RPS6KA4 ribosomal protein S6 kinase A4 2 2
MIRT469161 RNF111 ring finger protein 111 2 2
MIRT469211 RICTOR RPTOR independent companion of MTOR complex 2 2 2
MIRT469748 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT470597 POTEM POTE ankyrin domain family member M 2 2
MIRT470627 POTEG POTE ankyrin domain family member G 2 2
MIRT470772 PNPLA6 patatin like phospholipase domain containing 6 2 2
MIRT470883 PLXND1 plexin D1 2 2
MIRT470984 PITPNA phosphatidylinositol transfer protein alpha 2 2
MIRT471224 PHAX phosphorylated adaptor for RNA export 2 2
MIRT471254 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT471304 PGAM4 phosphoglycerate mutase family member 4 2 2
MIRT471473 PDE7B phosphodiesterase 7B 2 2
MIRT471772 NUP43 nucleoporin 43 2 4
MIRT472062 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT472177 NHP2L1 small nuclear ribonucleoprotein 13 2 2
MIRT472220 NGFR nerve growth factor receptor 2 2
MIRT472293 NFAT5 nuclear factor of activated T-cells 5 2 2
MIRT473073 MORN4 MORN repeat containing 4 2 2
MIRT473094 MLXIP MLX interacting protein 2 2
MIRT473202 MINK1 misshapen like kinase 1 2 2
MIRT473496 MBD6 methyl-CpG binding domain protein 6 2 2
MIRT473546 MAVS mitochondrial antiviral signaling protein 2 2
MIRT473573 MAT2A methionine adenosyltransferase 2A 2 6
MIRT473632 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT473999 LRRC20 leucine rich repeat containing 20 2 2
MIRT474841 KHSRP KH-type splicing regulatory protein 2 4
MIRT474998 KANSL1 KAT8 regulatory NSL complex subunit 1 2 2
MIRT475135 IP6K1 inositol hexakisphosphate kinase 1 2 2
MIRT475581 HMGXB4 HMG-box containing 4 2 2
MIRT477305 EPHB2 EPH receptor B2 2 2
MIRT477377 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 2 2
MIRT477950 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478291 DDX19A DEAD-box helicase 19A 2 4
MIRT478477 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478593 CTDSP2 CTD small phosphatase 2 2 3
MIRT478629 CTDNEP1 CTD nuclear envelope phosphatase 1 2 2
MIRT478842 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT479014 COL5A1 collagen type V alpha 1 chain 2 2
MIRT479119 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT479172 CLSPN claspin 2 2
MIRT480147 CALR calreticulin 2 2
MIRT481401 ASXL1 additional sex combs like 1, transcriptional regulator 2 2
MIRT482023 AMER1 APC membrane recruitment protein 1 2 2
MIRT482147 AK2 adenylate kinase 2 2 2
MIRT482353 AGO2 argonaute 2, RISC catalytic component 2 12
MIRT482645 FAM195B MAPK regulated corepressor interacting protein 1 2 4
MIRT482812 TRAF6 TNF receptor associated factor 6 2 2
MIRT483331 CHRDL1 chordin like 1 2 8
MIRT483623 NAV2 neuron navigator 2 2 2
MIRT483657 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT483702 ASPH aspartate beta-hydroxylase 2 2
MIRT483808 CYP2W1 cytochrome P450 family 2 subfamily W member 1 2 6
MIRT483860 EMID1 EMI domain containing 1 2 2
MIRT483931 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484198 SUMO1 small ubiquitin-like modifier 1 2 4
MIRT484280 AIP aryl hydrocarbon receptor interacting protein 2 4
MIRT484356 GATA6 GATA binding protein 6 2 10
MIRT484417 SNX19 sorting nexin 19 2 2
MIRT484430 RAB7A RAB7A, member RAS oncogene family 2 4
MIRT484575 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 2 2
MIRT484844 ZNF70 zinc finger protein 70 2 6
MIRT485268 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT485927 PGPEP1 pyroglutamyl-peptidase I 2 6
MIRT485991 YIPF2 Yip1 domain family member 2 2 2
MIRT486092 SLC7A5 solute carrier family 7 member 5 2 4
MIRT486114 INO80E INO80 complex subunit E 2 2
MIRT486310 SIPA1 signal-induced proliferation-associated 1 2 2
MIRT486376 TIGD5 tigger transposable element derived 5 2 2
MIRT486434 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 2 2
MIRT486723 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 4
MIRT486790 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT486890 TSPYL4 TSPY like 4 2 4
MIRT487040 C10orf55 chromosome 10 open reading frame 55 2 2
MIRT487130 NCOR2 nuclear receptor corepressor 2 2 2
MIRT487156 LINGO3 leucine rich repeat and Ig domain containing 3 2 2
MIRT487228 CBS cystathionine-beta-synthase 2 4
MIRT487332 SREBF1 sterol regulatory element binding transcription factor 1 2 4
MIRT487414 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487551 TM6SF2 transmembrane 6 superfamily member 2 2 4
MIRT487580 FAM83H family with sequence similarity 83 member H 2 4
MIRT487609 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487681 B3GALT5 beta-1,3-galactosyltransferase 5 2 4
MIRT487692 CDK14 cyclin dependent kinase 14 2 2
MIRT487832 CLSTN1 calsyntenin 1 2 6
MIRT487875 CASZ1 castor zinc finger 1 2 4
MIRT487899 CST9 cystatin 9 2 2
MIRT487950 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT488094 DLGAP3 DLG associated protein 3 2 4
MIRT488188 MAT1A methionine adenosyltransferase 1A 2 2
MIRT488235 DNLZ DNL-type zinc finger 2 2
MIRT488279 PARS2 prolyl-tRNA synthetase 2, mitochondrial 2 2
MIRT488410 NKX6-2 NK6 homeobox 2 2 4
MIRT488533 GPATCH3 G-patch domain containing 3 2 2
MIRT488686 NAT9 N-acetyltransferase 9 (putative) 2 2
MIRT489040 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT489052 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489116 PPFIA3 PTPRF interacting protein alpha 3 2 3
MIRT489170 ANKRD45 ankyrin repeat domain 45 2 4
MIRT489225 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489257 TTLL1 tubulin tyrosine ligase like 1 2 4
MIRT489283 RBM8A RNA binding motif protein 8A 2 8
MIRT489358 SYNGR1 synaptogyrin 1 2 4
MIRT489375 RAB11B RAB11B, member RAS oncogene family 2 6
MIRT489473 SLITRK5 SLIT and NTRK like family member 5 2 2
MIRT489505 CRLF3 cytokine receptor like factor 3 2 4
MIRT489574 SSBP2 single stranded DNA binding protein 2 2 2
MIRT489697 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT489849 ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 2 2
MIRT490074 PRRT2 proline rich transmembrane protein 2 2 4
MIRT490177 TMEM63C transmembrane protein 63C 2 2
MIRT490204 PKNOX2 PBX/knotted 1 homeobox 2 2 2
MIRT490277 ZNF562 zinc finger protein 562 2 4
MIRT490286 ISL2 ISL LIM homeobox 2 2 2
MIRT490300 HOXB13 homeobox B13 2 2
MIRT490607 SLC47A1 solute carrier family 47 member 1 2 4
MIRT490679 SSTR1 somatostatin receptor 1 2 2
MIRT490751 SRCIN1 SRC kinase signaling inhibitor 1 2 2
MIRT490914 STRN4 striatin 4 2 2
MIRT491042 CHST12 carbohydrate sulfotransferase 12 2 2
MIRT491092 MSI1 musashi RNA binding protein 1 2 4
MIRT491125 PTPRE protein tyrosine phosphatase, receptor type E 2 2
MIRT491206 MLLT1 MLLT1, super elongation complex subunit 2 6
MIRT491227 KCNA5 potassium voltage-gated channel subfamily A member 5 2 2
MIRT491265 DHX40 DEAH-box helicase 40 2 2
MIRT491392 HAUS3 HAUS augmin like complex subunit 3 2 2
MIRT491403 C1D C1D nuclear receptor corepressor 2 2
MIRT491511 CREBL2 cAMP responsive element binding protein like 2 2 2
MIRT491553 YAE1D1 Yae1 domain containing 1 2 2
MIRT491684 MNT MAX network transcriptional repressor 2 4
MIRT491733 SEMA3F semaphorin 3F 2 2
MIRT491817 ZBTB7B zinc finger and BTB domain containing 7B 2 2
MIRT491942 VPS52 VPS52, GARP complex subunit 2 2
MIRT492156 STK11 serine/threonine kinase 11 2 4
MIRT492474 RASD1 ras related dexamethasone induced 1 2 4
MIRT492531 PSMD11 proteasome 26S subunit, non-ATPase 11 2 2
MIRT492562 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 4
MIRT492684 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT492728 PHF12 PHD finger protein 12 2 2
MIRT492841 NRGN neurogranin 2 2
MIRT492877 NFIX nuclear factor I X 2 4
MIRT492907 NFIC nuclear factor I C 2 2
MIRT492934 NEUROD2 neuronal differentiation 2 2 2
MIRT493221 MEX3A mex-3 RNA binding family member A 2 2
MIRT493450 ITFG3 family with sequence similarity 234 member A 2 2
MIRT493672 HAP1 huntingtin associated protein 1 2 2
MIRT493875 FAM73B mitoguardin 2 2 4
MIRT494031 DUSP7 dual specificity phosphatase 7 2 4
MIRT494171 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT494366 SOLH calpain 15 1 1
MIRT494466 BTF3L4 basic transcription factor 3 like 4 2 6
MIRT494506 BDNF-AS BDNF antisense RNA 2 2
MIRT494621 ASB6 ankyrin repeat and SOCS box containing 6 2 4
MIRT494660 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT494697 ARHGAP31 Rho GTPase activating protein 31 2 2
MIRT494791 ANKRD13B ankyrin repeat domain 13B 2 4
MIRT494940 IFFO2 intermediate filament family orphan 2 2 2
MIRT496591 TAGLN transgelin 2 2
MIRT497041 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B 2 2
MIRT498592 KRT8 keratin 8 2 2
MIRT498730 SNTN sentan, cilia apical structure protein 2 6
MIRT499389 PLCG2 phospholipase C gamma 2 2 4
MIRT499798 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT499987 HIST1H2BD histone cluster 1 H2B family member d 2 4
MIRT500446 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT501888 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 4
MIRT503422 SLC25A45 solute carrier family 25 member 45 2 6
MIRT507784 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT508894 METTL14 methyltransferase like 14 2 2
MIRT509631 RRP7A ribosomal RNA processing 7 homolog A 2 4
MIRT510111 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510143 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510628 TMEM167A transmembrane protein 167A 2 4
MIRT511025 NRF1 nuclear respiratory factor 1 2 2
MIRT512365 CPM carboxypeptidase M 2 4
MIRT512904 UBL4A ubiquitin like 4A 2 2
MIRT514349 DNAH17 dynein axonemal heavy chain 17 2 4
MIRT515021 SUMF2 sulfatase modifying factor 2 2 2
MIRT515254 DUSP28 dual specificity phosphatase 28 2 2
MIRT516212 RPP30 ribonuclease P/MRP subunit p30 2 2
MIRT516674 ZNF860 zinc finger protein 860 2 4
MIRT518382 ZNF250 zinc finger protein 250 2 2
MIRT518942 LSG1 large 60S subunit nuclear export GTPase 1 2 2
MIRT519913 ZFAND4 zinc finger AN1-type containing 4 2 2
MIRT519952 ZCCHC8 zinc finger CCHC-type containing 8 2 2
MIRT520328 UBXN2A UBX domain protein 2A 2 2
MIRT520617 TMEM41B transmembrane protein 41B 2 2
MIRT520670 TMEM11 transmembrane protein 11 2 2
MIRT520860 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone 2 2
MIRT521450 RAD51 RAD51 recombinase 2 2
MIRT522338 NCKIPSD NCK interacting protein with SH3 domain 2 8
MIRT523488 GNG4 G protein subunit gamma 4 2 2
MIRT523680 FOPNL FGFR1OP N-terminal like 2 2
MIRT523724 FBXW2 F-box and WD repeat domain containing 2 2 4
MIRT523876 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 2 4
MIRT524057 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT524179 DFFA DNA fragmentation factor subunit alpha 2 2
MIRT524936 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT526837 PHC1 polyhomeotic homolog 1 2 2
MIRT527088 VSTM5 V-set and transmembrane domain containing 5 2 2
MIRT540687 BMP3 bone morphogenetic protein 3 2 2
MIRT541761 KLF8 Kruppel like factor 8 2 2
MIRT544292 TSPYL1 TSPY like 1 2 2
MIRT549412 ADAR adenosine deaminase, RNA specific 2 2
MIRT553369 TRIM44 tripartite motif containing 44 2 2
MIRT561757 PLAGL2 PLAG1 like zinc finger 2 2 2
MIRT562829 GCFC2 GC-rich sequence DNA-binding factor 2 2 2
MIRT562909 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT564459 SLC35E2 solute carrier family 35 member E2 2 4
MIRT568901 ATP6V1B1 ATPase H+ transporting V1 subunit B1 2 2
MIRT569120 ONECUT3 one cut homeobox 3 2 2
MIRT569232 SUSD1 sushi domain containing 1 2 2
MIRT569724 GPR173 G protein-coupled receptor 173 2 2
MIRT569762 SAMD14 sterile alpha motif domain containing 14 2 2
MIRT569858 KRT80 keratin 80 2 2
MIRT570283 ARPC3 actin related protein 2/3 complex subunit 3 2 2
MIRT570476 THRA thyroid hormone receptor, alpha 2 2
MIRT570854 GPRC5C G protein-coupled receptor class C group 5 member C 2 2
MIRT571198 C9orf62 chromosome 9 open reading frame 62 2 2
MIRT571322 TPCN2 two pore segment channel 2 2 2
MIRT572083 EXOC8 exocyst complex component 8 2 2
MIRT572126 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 2 2
MIRT573004 RPP25 ribonuclease P and MRP subunit p25 2 2
MIRT573491 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT573659 HES6 hes family bHLH transcription factor 6 2 2
MIRT574351 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT576453 Itga11 integrin alpha 11 2 3
MIRT608047 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 2 2
MIRT608252 ITGA11 integrin subunit alpha 11 2 3
MIRT613668 KIAA1210 KIAA1210 2 2
MIRT615642 ATF6 activating transcription factor 6 2 2
MIRT618581 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator 2 2
MIRT618869 MBL2 mannose binding lectin 2 2 2
MIRT618969 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619119 CD40LG CD40 ligand 2 2
MIRT619180 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620306 AQP6 aquaporin 6 2 2
MIRT620691 RFTN2 raftlin family member 2 2 2
MIRT621646 UBXN2B UBX domain protein 2B 2 2
MIRT622004 STK4 serine/threonine kinase 4 2 2
MIRT622429 NUDT19 nudix hydrolase 19 2 2
MIRT622580 PRRG4 proline rich and Gla domain 4 2 2
MIRT622811 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT624793 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT624975 ZNF665 zinc finger protein 665 2 4
MIRT625486 SMAD9 SMAD family member 9 2 2
MIRT626604 ACAA2 acetyl-CoA acyltransferase 2 2 2
MIRT626716 TRIM65 tripartite motif containing 65 2 2
MIRT626982 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627494 STRIP2 striatin interacting protein 2 2 2
MIRT628511 ZNF878 zinc finger protein 878 2 2
MIRT628541 ZNF701 zinc finger protein 701 2 2
MIRT628598 TMEM251 transmembrane protein 251 2 2
MIRT628825 SLC25A34 solute carrier family 25 member 34 2 2
MIRT628904 IGSF6 immunoglobulin superfamily member 6 2 2
MIRT628966 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) 2 2
MIRT629016 OSBPL10 oxysterol binding protein like 10 2 2
MIRT629067 KIF1C kinesin family member 1C 2 2
MIRT629197 PAPOLA poly(A) polymerase alpha 2 2
MIRT629353 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene 2 2
MIRT629455 WIZ widely interspaced zinc finger motifs 2 2
MIRT629703 XKR4 XK related 4 2 2
MIRT629745 SCD5 stearoyl-CoA desaturase 5 2 2
MIRT629904 SPATA5 spermatogenesis associated 5 2 2
MIRT629961 GLP2R glucagon like peptide 2 receptor 2 2
MIRT630031 MTL5 testis expressed metallothionein like protein 2 2
MIRT630397 MYH9 myosin heavy chain 9 2 4
MIRT631140 SYNJ2 synaptojanin 2 2 2
MIRT631391 COL4A3BP collagen type IV alpha 3 binding protein 2 2
MIRT631566 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT631623 PCDHB11 protocadherin beta 11 2 2
MIRT631942 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT632453 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT632695 MTMR10 myotubularin related protein 10 2 2
MIRT632748 MED28 mediator complex subunit 28 2 2
MIRT632838 IGF1 insulin like growth factor 1 2 2
MIRT632917 FRRS1 ferric chelate reductase 1 2 2
MIRT633037 DNAL1 dynein axonemal light chain 1 2 2
MIRT633388 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633448 KLLN killin, p53-regulated DNA replication inhibitor 2 2
MIRT633871 ATP6V1A ATPase H+ transporting V1 subunit A 2 2
MIRT633916 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT633958 GRWD1 glutamate rich WD repeat containing 1 2 2
MIRT634050 NUP155 nucleoporin 155 2 2
MIRT634274 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT634381 RAP2B RAP2B, member of RAS oncogene family 2 2
MIRT634443 PDE7A phosphodiesterase 7A 2 2
MIRT634580 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 4
MIRT634704 DSEL dermatan sulfate epimerase-like 2 2
MIRT634776 CD3D CD3d molecule 2 2
MIRT635032 WWTR1 WW domain containing transcription regulator 1 2 2
MIRT636078 ZNF280C zinc finger protein 280C 2 2
MIRT636708 ARSK arylsulfatase family member K 2 2
MIRT637447 ZNF324B zinc finger protein 324B 2 2
MIRT637590 PLD6 phospholipase D family member 6 2 2
MIRT637679 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D 2 2
MIRT637893 SLC19A3 solute carrier family 19 member 3 2 4
MIRT638362 RBMS2 RNA binding motif single stranded interacting protein 2 2 4
MIRT638604 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT638831 CRTAP cartilage associated protein 2 2
MIRT638885 CEP97 centrosomal protein 97 2 4
MIRT639663 PPEF2 protein phosphatase with EF-hand domain 2 2 4
MIRT645001 POLR2J3 RNA polymerase II subunit J3 2 2
MIRT645067 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII 2 2
MIRT646957 UPK3BL uroplakin 3B like 1 2 2
MIRT648307 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 4
MIRT649051 SLC1A2 solute carrier family 1 member 2 2 2
MIRT649893 SLFN12L schlafen family member 12 like 2 2
MIRT650204 DOCK7 dedicator of cytokinesis 7 2 2
MIRT652054 TTC39B tetratricopeptide repeat domain 39B 2 2
MIRT654797 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT655930 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 2 2
MIRT655978 NAV1 neuron navigator 1 2 2
MIRT657721 GPC4 glypican 4 2 2
MIRT659309 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT659851 CAPZB capping actin protein of muscle Z-line beta subunit 2 2
MIRT661483 CHMP1B charged multivesicular body protein 1B 2 2
MIRT661914 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT661981 DSN1 DSN1 homolog, MIS12 kinetochore complex component 2 4
MIRT662074 ZNF284 zinc finger protein 284 2 2
MIRT662500 ANGPT4 angiopoietin 4 2 2
MIRT662669 LRRC47 leucine rich repeat containing 47 2 2
MIRT663174 FGFR1OP FGFR1 oncogene partner 2 2
MIRT663385 ZNF770 zinc finger protein 770 2 4
MIRT664000 WDR75 WD repeat domain 75 2 2
MIRT664167 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F 2 2
MIRT664497 POLR3K RNA polymerase III subunit K 2 2
MIRT665065 CCDC77 coiled-coil domain containing 77 2 2
MIRT665088 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT665725 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT665930 TBC1D19 TBC1 domain family member 19 2 4
MIRT666097 SSR1 signal sequence receptor subunit 1 2 2
MIRT666850 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT667390 MOB1B MOB kinase activator 1B 2 2
MIRT667583 LONRF2 LON peptidase N-terminal domain and ring finger 2 2 2
MIRT667904 ING1 inhibitor of growth family member 1 2 2
MIRT667985 HECTD3 HECT domain E3 ubiquitin protein ligase 3 2 2
MIRT668205 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 2 2
MIRT668286 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT668393 FAT3 FAT atypical cadherin 3 2 2
MIRT668450 FAM208A family with sequence similarity 208 member A 2 2
MIRT669005 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669459 ATL3 atlastin GTPase 3 2 2
MIRT669667 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT669897 KIAA0754 KIAA0754 2 4
MIRT669983 SSR3 signal sequence receptor subunit 3 2 2
MIRT670160 SLC29A4 solute carrier family 29 member 4 2 2
MIRT670245 TRIM13 tripartite motif containing 13 2 2
MIRT670282 CBY3 chibby family member 3 2 2
MIRT670363 ULBP3 UL16 binding protein 3 2 4
MIRT670635 BVES blood vessel epicardial substance 2 2
MIRT670739 HOOK3 hook microtubule tethering protein 3 2 2
MIRT670778 TRIM66 tripartite motif containing 66 2 2
MIRT670921 DESI1 desumoylating isopeptidase 1 2 2
MIRT671374 TMPPE transmembrane protein with metallophosphoesterase domain 2 2
MIRT671406 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671436 TOX4 TOX high mobility group box family member 4 2 2
MIRT671661 TRUB2 TruB pseudouridine synthase family member 2 2 4
MIRT671718 PMPCA peptidase, mitochondrial processing alpha subunit 2 2
MIRT672043 SMTNL2 smoothelin like 2 2 2
MIRT672145 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 2 2
MIRT672406 SLC10A6 solute carrier family 10 member 6 2 2
MIRT672513 GGCX gamma-glutamyl carboxylase 2 2
MIRT672580 RNF24 ring finger protein 24 2 2
MIRT673207 C10orf76 chromosome 10 open reading frame 76 2 2
MIRT673380 ZNF124 zinc finger protein 124 2 2
MIRT673503 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 2 6
MIRT673861 CAPN7 calpain 7 2 2
MIRT673935 ZNF500 zinc finger protein 500 2 2
MIRT673990 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT674090 PLEKHA1 pleckstrin homology domain containing A1 2 2
MIRT674132 RPL7L1 ribosomal protein L7 like 1 2 2
MIRT674306 THAP5 THAP domain containing 5 2 2
MIRT674378 POLR3D RNA polymerase III subunit D 2 2
MIRT674650 NKRF NFKB repressing factor 2 2
MIRT674671 PLCE1 phospholipase C epsilon 1 2 2
MIRT674733 ZNF451 zinc finger protein 451 2 4
MIRT674787 NPR1 natriuretic peptide receptor 1 2 2
MIRT674901 RASSF9 Ras association domain family member 9 2 2
MIRT675025 SNX1 sorting nexin 1 2 2
MIRT675350 KLHL26 kelch like family member 26 2 2
MIRT675424 CLEC7A C-type lectin domain containing 7A 2 2
MIRT675505 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 2 2
MIRT675745 AHR aryl hydrocarbon receptor 2 2
MIRT675869 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT675999 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676221 TMEM91 transmembrane protein 91 2 2
MIRT677307 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT677838 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT677876 ABI2 abl interactor 2 2 2
MIRT677974 ITGB3 integrin subunit beta 3 2 2
MIRT678184 CRCP CGRP receptor component 2 2
MIRT678282 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT679469 RHOF ras homolog family member F, filopodia associated 2 2
MIRT679521 RAB36 RAB36, member RAS oncogene family 2 2
MIRT679921 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 2 2
MIRT680038 OSBPL2 oxysterol binding protein like 2 2 4
MIRT680254 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680287 AKIP1 A-kinase interacting protein 1 2 2
MIRT680507 PRIM2 DNA primase subunit 2 2 2
MIRT680637 KIAA1456 KIAA1456 2 2
MIRT680827 ARL8B ADP ribosylation factor like GTPase 8B 2 2
MIRT680879 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like 2 2
MIRT681006 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 2 2
MIRT681128 INTS7 integrator complex subunit 7 2 2
MIRT681166 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT681228 DUSP19 dual specificity phosphatase 19 2 2
MIRT681311 IKZF3 IKAROS family zinc finger 3 2 2
MIRT681348 BRI3BP BRI3 binding protein 2 2
MIRT681615 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT681785 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT681898 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682091 ITGA3 integrin subunit alpha 3 2 4
MIRT682144 SMS spermine synthase 2 2
MIRT682170 SLC38A7 solute carrier family 38 member 7 2 2
MIRT682227 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT682350 PLEKHB2 pleckstrin homology domain containing B2 2 2
MIRT682374 PHACTR4 phosphatase and actin regulator 4 2 2
MIRT682543 EXOSC2 exosome component 2 2 2
MIRT682628 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT683549 HAVCR1 hepatitis A virus cellular receptor 1 2 2
MIRT683650 ZNF695 zinc finger protein 695 2 2
MIRT684449 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684863 ZNF749 zinc finger protein 749 2 2
MIRT684963 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685054 GEMIN4 gem nuclear organelle associated protein 4 2 2
MIRT685102 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685817 SLC27A1 solute carrier family 27 member 1 2 2
MIRT685918 MOCS3 molybdenum cofactor synthesis 3 2 2
MIRT686672 TMEM120B transmembrane protein 120B 2 2
MIRT687125 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT687746 KIAA1328 KIAA1328 2 2
MIRT688069 GLUL glutamate-ammonia ligase 2 2
MIRT688776 CDH7 cadherin 7 2 2
MIRT688949 ATXN3 ataxin 3 2 2
MIRT689691 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT689746 PRR13 proline rich 13 2 2
MIRT689942 MANSC1 MANSC domain containing 1 2 2
MIRT690099 PNMA2 paraneoplastic Ma antigen 2 2 2
MIRT690197 C5orf45 MRN complex interacting protein 2 2
MIRT690255 CAMLG calcium modulating ligand 2 2
MIRT690426 FAM71F2 family with sequence similarity 71 member F2 2 2
MIRT691118 ADIPOQ adiponectin, C1Q and collagen domain containing 2 2
MIRT691238 DFNB59 pejvakin 2 2
MIRT691305 ZNF681 zinc finger protein 681 2 2
MIRT691374 GP5 glycoprotein V platelet 2 2
MIRT691809 WARS tryptophanyl-tRNA synthetase 2 2
MIRT692153 CEP104 centrosomal protein 104 2 2
MIRT692354 AGTRAP angiotensin II receptor associated protein 2 2
MIRT692582 NCMAP non-compact myelin associated protein 2 2
MIRT692656 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT692752 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT693101 SCNM1 sodium channel modifier 1 2 2
MIRT693261 HBS1L HBS1 like translational GTPase 2 2
MIRT693303 SYTL3 synaptotagmin like 3 2 2
MIRT693396 ZNF460 zinc finger protein 460 2 2
MIRT693494 MOB3A MOB kinase activator 3A 2 2
MIRT693541 ZNF708 zinc finger protein 708 2 2
MIRT693569 PIGR polymeric immunoglobulin receptor 2 2
MIRT694496 AGBL5 ATP/GTP binding protein like 5 2 2
MIRT694741 LLGL1 LLGL1, scribble cell polarity complex component 2 2
MIRT694872 ZNF417 zinc finger protein 417 2 2
MIRT695079 ZNF17 zinc finger protein 17 2 2
MIRT695462 COX18 COX18, cytochrome c oxidase assembly factor 2 2
MIRT695730 ZNF117 zinc finger protein 117 2 2
MIRT695905 MED16 mediator complex subunit 16 2 2
MIRT696268 TACO1 translational activator of cytochrome c oxidase I 2 2
MIRT696519 C3 complement C3 2 2
MIRT696570 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696652 AGXT2 alanine--glyoxylate aminotransferase 2 2 2
MIRT696798 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT696828 PLLP plasmolipin 2 2
MIRT696972 CCDC80 coiled-coil domain containing 80 2 2
MIRT697092 GPKOW G-patch domain and KOW motifs 2 2
MIRT697170 INMT indolethylamine N-methyltransferase 2 2
MIRT697213 ZYG11A zyg-11 family member A, cell cycle regulator 2 2
MIRT697339 ZNF641 zinc finger protein 641 2 2
MIRT697589 YME1L1 YME1 like 1 ATPase 2 2
MIRT698626 TES testin LIM domain protein 2 2
MIRT698957 SPAST spastin 2 2
MIRT699091 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699439 SLC1A5 solute carrier family 1 member 5 2 2
MIRT699561 SIT1 signaling threshold regulating transmembrane adaptor 1 2 2
MIRT700333 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT700365 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT700466 PURB purine rich element binding protein B 2 2
MIRT701687 MYADM myeloid associated differentiation marker 2 2
MIRT701765 MSL2 MSL complex subunit 2 2 2
MIRT703186 GPBP1 GC-rich promoter binding protein 1 2 2
MIRT703213 GOLGA3 golgin A3 2 2
MIRT703369 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703433 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703609 FBXO45 F-box protein 45 2 2
MIRT703708 FAM134A reticulophagy regulator family member 2 2 2
MIRT703818 EVI5 ecotropic viral integration site 5 2 2
MIRT703922 EPG5 ectopic P-granules autophagy protein 5 homolog 2 2
MIRT704242 DHDDS dehydrodolichyl diphosphate synthase subunit 2 2
MIRT704653 CLCC1 chloride channel CLIC like 1 2 2
MIRT704939 CCDC120 coiled-coil domain containing 120 2 2
MIRT705168 C11orf58 chromosome 11 open reading frame 58 2 2
MIRT705538 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705668 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706151 ZNF674 zinc finger protein 674 2 2
MIRT706480 SNX27 sorting nexin family member 27 2 2
MIRT708784 CD200R1 CD200 receptor 1 2 2
MIRT708845 SCAND3 zinc finger BED-type containing 9 1 1
MIRT709844 SNX12 sorting nexin 12 2 2
MIRT710445 BTNL3 butyrophilin like 3 2 2
MIRT711092 OGG1 8-oxoguanine DNA glycosylase 4 2
MIRT711334 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT713369 STK35 serine/threonine kinase 35 2 2
MIRT717125 SOWAHA sosondowah ankyrin repeat domain family member A 2 2
MIRT717408 ZCCHC24 zinc finger CCHC-type containing 24 2 2
MIRT722232 ZNF503 zinc finger protein 503 2 2
MIRT722670 RRM2 ribonucleotide reductase regulatory subunit M2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4728 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4728 Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4728 Fluorouracil 3385 NSC19893 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4728 Vincristine 5978 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-mir-4728 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-mir-4728 Androstenedione 6128 NSC9563 sensitive cell line (MCF-7)
hsa-mir-4728 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-4728 Tamoxifen 2733525 NSC180973 approved resistant cell line (MCF7)
hsa-mir-4728 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4728-5p Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PATU8988)
hsa-miR-4728-5p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-4728-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-4728-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-4728-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4728-5p Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4728-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4728-5p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-4728-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

Error report submission