pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CPEB2   
Synonyms CPE-BP2, CPEB-2, hCPEB-2
Description cytoplasmic polyadenylation element binding protein 2
Transcript NM_001177381   
Other Transcripts NM_001177382 , NM_001177383 , NM_001177384 , NM_182485 , NM_182646   
Expression
Putative miRNA Targets on CPEB2
3'UTR of CPEB2
(miRNA target sites are highlighted)
>CPEB2|NM_001177381|3'UTR
   1 GAATAGCAAACTGGCCTCTGTTTAACAAGGAAAGAAAGGGTGCATGTGGCTTACTGTGTCTGAAGATACTGACATGCAGA
  81 AGAAATAAGTGCATTCTTCTGCTTTTCACCCCAGCTATCAATACATGCATCTTTATCAGCAGCCAAAACACTACAAGCCT
 161 CTTGTTTTTCACCAAAACCCTACATCTCAGGCTTACTAATTTTTGTGATATTTTCATGTTCAAATAAAATGTTTTTTTGT
 241 ATTTTCTCCAAGTTATTTTTATATGTAAAGTTAAAATTAGATATGAGAATGTTTTGCGTAGGGGCAACACAGTCTGCTGC
 321 TATATAGTGGGGGAAGCGTGCACTTATTTCTAAACATGGGTTTTTAACTTCAAGATCTGCCCCAGTAATTTACCAAAGGT
 401 AGCAAAATAATAGTGAAGATGGAATATGTCTGCTACAAATGCTTATTTTTATTGTTGCTATTTTCAGTGTATACATAAAC
 481 TAAAAATTAGGGTTGATTTTTTTGCTCTCCATTTTGACTTGCAAGAAATAATACCTCAAGATAATCTGATTTATTAGCTA
 561 TTTTTAAACATTTTTAATCACAAGCTGTATTAGCTTTGCTGCTATATAGGTGTTATGTGTAAATGCCACCTATTAATACG
 641 GGACTGAAAACGTTAGAGACACACTGCATTGCAGATAAAATGCAGGCAGCACAATATGGCCTAAACTGCCATAGTTTTAG
 721 AATGTGAAAAAAATGCATGTTTACTTACCTGTATACACCATATGCATGCACTAGAATTATTAACTAACGAGGTGAGGTAT
 801 TGCAAATGTTCAAAAAAGCTCTCTTGAATCTAGGTAGCATGAACAAATTATAAAATTTGTTTAAAAAAGCAAACTTGCAT
 881 GCATTATTGTGACTTCAAGTTTAAAAAATCGTCTTACATGTGTACAATATGCAAATTAGTTTTAGATTAGAGAGTGCAGC
 961 CATTTTGTGATCTGGTCAGTAGTGGAATTCGATTTTATGCAGACTGGATGTAATATTTGTAATCCCTGTGCAATTTTGTG
1041 ACGTGCGGTTCTAATTCATGTGCAGTGATATAGTATAGATAAAAGAATGAGTAAAAGAAAATACAAGAATTCTAAAGAAA
1121 GTTGGTTTTAGCCCCTTTGATAGTCCATGGTTAAGACATCCTTTATAAACCAAAGATGGCCAGCACACTGCTAACCAGTC
1201 ACCAAATGTAAGACCCATAAGAAACCCATATTTAAAAATCTGAATTTTTTAGAAGAATGCAAAACTTTAGTAAACCCTAA
1281 GTAAAGTCAAAATGGAGAAGGGGAAATATACAGATGGCTAGTTGCATAAAATTAAATTTTACCTTTATAAGACAATGGTG
1361 AAATCTGGCTTGAACTTGCTTATGTGTTTAACCTATAAATATTGGGGTCTTCTGTCTAAACTGGGGTCACTGTTGCATGG
1441 AACATTGTTCTTAATAGTTGAGAATTGCTTTTTTGAAAATTTTCATGAAGGAATTTTGGTAATGACTTTGCTTGCAGGTT
1521 TTTTGGGGTGTTTTGAGAAAGTGGCATGGAAACATGCAGTAGTTAATGAGTTTCTCTTGGTACTGAACACTATTAGAATA
1601 TCATTAGTGATATTTTTTCTCTTTAGAGCATTTTTAATGCAACTAGCCCCTATATTTTAATGTAAGAGTTACTCTGCAAT
1681 CTAAGCAAAGCACCCAACAATGGTAAATGTTTTTTAAAAATGCAGAACTAAGATTTTTGACTCTAAAGAGAGAAAATTAC
1761 AAGGGTGTTGCCTTATAGCAAACCCTTGGGACAATCCTTCATGTGAGCAAAGTGTTGATCTTAATATTGGTTGTCTGTGG
1841 TGTGCTTTTTTGTACTGTAAAAATATGTGGTTCATGTCTAACTCTGCTGTTTTATTGTGGTTGTGGTTCAAGTTTTTAAT
1921 GTTTAAAGTTGATGCTGTTTTCAGAAGAGCTTTTTACTAATTTATTTGTCAGTGTTCCCTATTTGTTACTTAACCATGAT
2001 CCTCCAGATTTTTTGGAGTATTCTTTTCTAACCTTAACCCTGCCAAACCTTGATCCATTTTGACATTTGTTATGCACTAT
2081 TTTTATATCTCTGTGAGAGATTTTTCCAACAGTCAGCTATTTTATGGCACACTTTTTTTGACTGATGACATCTCCTTTGC
2161 TATACCTCAATTTTTGGAATTTAGAGAAGAAATCAGTAGTTTTGCAATGTTAATTATTTAGATATTTAATTTCGCAGATT
2241 TTTAAACTTTATTTTCATAATTTCTGCTTAATGTTTAAAATTGAAGAGCCTTTTCATGTATTAAATAATGAACACAAATT
2321 ATATAATTAAAATAATTGGAGATGTTGAAAATCATTTTCCCTTCTTAAACAGAAATAAATATTTGGAATGAAGGGGAATG
2401 TACTAGAACACCCTTTTTGCCACGGGTAAAAATAACAGAAATGTATGGTTTGTTTTACCTTCATTTCTGTACAAGTAAAG
2481 CTTATTAGTCTAATGTTTTGTTCCTTTCCCACCTCACCCCTACCTCTTTTGTTTTGTTTTGTTTTTGCCCTTTATGTACT
2561 ACATTCTTATTTTCTAACTTTTAAACACTGTATTGGAGGTTTTTTTTTAATTTACAGATCATATTTATTTTACTATTTTT
2641 GTAGAAAATTATTAATTTTGATTGTATTTTTGTATTTTAAAAGCTTCTTCACTTGTGTTCCCTAAATATTCATATTGCTG
2721 CCCAAAAGTATGACTGTGGAGGAAAAAAAAATACTTTAAAAATCCACACTTTTTGTTAAGAAGGAAACATTTAGCATTTA
2801 TATATTTGTGTATGGAAAACACTTGATATTTTATCCCTGTTGCATCTGGCTGCACAGAGCCTCTCCTCAAAGATGCTACA
2881 AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTGATGTGCAATACTGTTTCTAATGTTTG
2961 TATAAAAAAAAACAGTGTAAACCTTTTTAATGCAAATTTATTTTTTTCATTGCATATTTTGCAGATTTTATCCACAGTGT
3041 CATTTTTTACTGTCAGAAAAGATACCCCTTTTGTCATTGCAACTATTTTTTAAATCCAGAAATCTTTGTACTGATGTAAA
3121 TGATTGTAGTTATTTTGGATAGTGTTTTGCTAACAAAAGGAGAGACTTTTTTCATGCATATTTCTATTTTGTTTTTTTGG
3201 GTTTTATTTTATTTTAATAGTAGTAAAATACTTGGAATAATTTTTCATATTCTTGTCATTAATATTATTTTGTATTTTTA
3281 TGTGGAAATATATAATTTTATGACACTAATTGCTAAAGTTTATTTTATGTTGAATTATTTTTGGAGCTGAAATCTTTGTA
3361 ATATTAAAGCAACTAGTTTCTAATTCCCAGTTTCTGTATAGAATCGCACAAGTGGTTTATGGAGTGTTTGGATTGTAATT
3441 ATAAATGGTTCTTTGATATGCAAATTAATATTTTCAGTTGATTTTATTTTATATTCCTAATGGGGTGTTAAAGCCGTTTT
3521 TTATTTTTTTCTAAATAAAAAGAGAACCCATGCTTTTATGGACACTAGGTAAACACCTTCAGCTTAAATTTTTCGTTAAA
3601 TATTTTAGTTTATTTTATTGTTATCTTCCAGGTGTCTAAATCTCCAGTCTGTCTGTTGTACTGGTAATTTAACTCTGTAA
3681 TGGAATAGTTTGCTGCCAACTATTTATATTAAGTAATTTTTAAATATTTGTAATATTGTTGACTGACTAATAAACTATTA
3761 AGTTATTGGCATA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccUACGUUUAAAau 5'
                ||||||||||  
Target 5' tttttaATGCAAATTTat 3'
2984 - 3001 140.00 -7.10
2
miRNA  3' agGAC-CUACGUUUAAAAu 5'
            :|| |:| |||:|||| 
Target 5' ggTTGTGGTTCAAGTTTTt 3'
1899 - 1917 140.00 -8.40
3
miRNA  3' aggaccuACGUUUAAAAu 5'
                 ||||:||||| 
Target 5' catatttTGCAGATTTTa 3'
3013 - 3030 139.00 -8.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19691861 10 COSMIC
COSN5865456 57 COSMIC
COSN30114874 87 COSMIC
COSN20673586 135 COSMIC
COSN28874382 239 COSMIC
COSN31482519 246 COSMIC
COSN26566001 442 COSMIC
COSN31594552 504 COSMIC
COSN31591685 506 COSMIC
COSN29445523 688 COSMIC
COSN31565721 721 COSMIC
COSN22481382 812 COSMIC
COSN31534868 953 COSMIC
COSN31609438 991 COSMIC
COSN31513943 1037 COSMIC
COSN26508218 1041 COSMIC
COSN5557207 1044 COSMIC
COSN1998663 1310 COSMIC
COSN27668901 1324 COSMIC
COSN30541873 1345 COSMIC
COSN31570149 1676 COSMIC
COSN31570606 1716 COSMIC
COSN31512947 1802 COSMIC
COSN9218415 1938 COSMIC
COSN16036952 1990 COSMIC
COSN16731518 2024 COSMIC
COSN31515862 2024 COSMIC
COSN31570611 2103 COSMIC
COSN31609715 2190 COSMIC
COSN31610003 2234 COSMIC
COSN26637396 2274 COSMIC
COSN19655666 2322 COSMIC
COSN31536889 2355 COSMIC
COSN25530664 2396 COSMIC
COSN5010190 2404 COSMIC
COSN31523464 2559 COSMIC
COSN20099823 2609 COSMIC
COSN31519071 2649 COSMIC
COSN26644559 2743 COSMIC
COSN31536221 2755 COSMIC
COSN31563304 2837 COSMIC
COSN30175882 2973 COSMIC
COSN28761962 2982 COSMIC
COSN30540846 3034 COSMIC
COSN9885997 3065 COSMIC
COSN21801521 3079 COSMIC
COSN22515509 3086 COSMIC
COSN9885998 3096 COSMIC
COSN31607991 3245 COSMIC
COSN20099825 3253 COSMIC
COSN1998671 3419 COSMIC
COSN26549550 3561 COSMIC
COSN31548195 3616 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1285024409 2 dbSNP
rs982716822 5 dbSNP
rs1222751292 6 dbSNP
rs771025072 7 dbSNP
rs1308701438 13 dbSNP
rs1227562800 16 dbSNP
rs1234606963 16 dbSNP
rs1250384350 17 dbSNP
rs1481895210 20 dbSNP
rs746440996 21 dbSNP
rs376965592 26 dbSNP
rs1270128575 31 dbSNP
rs1490288866 32 dbSNP
rs190464074 34 dbSNP
rs749682069 35 dbSNP
rs180876463 36 dbSNP
rs1205934773 38 dbSNP
rs773041674 38 dbSNP
rs373089372 39 dbSNP
rs1426865476 40 dbSNP
rs1303987148 45 dbSNP
rs1196327556 50 dbSNP
rs774356935 51 dbSNP
rs1365905686 53 dbSNP
rs535528143 71 dbSNP
rs1353470008 78 dbSNP
rs1050365168 90 dbSNP
rs1383012361 117 dbSNP
rs890404817 118 dbSNP
rs928670307 126 dbSNP
rs1008721066 137 dbSNP
rs1041967172 147 dbSNP
rs757897891 152 dbSNP
rs1156888450 154 dbSNP
rs1418544933 155 dbSNP
rs1439204533 160 dbSNP
rs1465056261 160 dbSNP
rs1053500159 161 dbSNP
rs1166188539 163 dbSNP
rs1482478761 174 dbSNP
rs891735613 176 dbSNP
rs1237192006 179 dbSNP
rs1216970783 192 dbSNP
rs369515285 195 dbSNP
rs1284540200 206 dbSNP
rs903043897 217 dbSNP
rs1410689045 219 dbSNP
rs1011487603 222 dbSNP
rs747373961 232 dbSNP
rs1316718156 233 dbSNP
rs777328938 235 dbSNP
rs1353949892 236 dbSNP
rs1042946275 241 dbSNP
rs900335687 251 dbSNP
rs1432676534 262 dbSNP
rs996375201 265 dbSNP
rs1340401322 269 dbSNP
rs1030091399 278 dbSNP
rs1419157239 285 dbSNP
rs1386011299 288 dbSNP
rs1165551498 298 dbSNP
rs555557987 299 dbSNP
rs1487075947 300 dbSNP
rs958326029 305 dbSNP
rs1216609134 309 dbSNP
rs1004573450 314 dbSNP
rs1218771148 315 dbSNP
rs569469610 325 dbSNP
rs1014523222 333 dbSNP
rs1299677054 338 dbSNP
rs961632616 339 dbSNP
rs974286825 341 dbSNP
rs756975972 343 dbSNP
rs1359675611 344 dbSNP
rs1277480476 345 dbSNP
rs1027146758 353 dbSNP
rs1340883415 357 dbSNP
rs971409182 361 dbSNP
rs982402203 372 dbSNP
rs1304977778 388 dbSNP
rs1456480982 400 dbSNP
rs908005164 424 dbSNP
rs538048243 425 dbSNP
rs1430661867 427 dbSNP
rs970253247 429 dbSNP
rs962211203 432 dbSNP
rs1279207588 436 dbSNP
rs1368408883 451 dbSNP
rs1484552608 460 dbSNP
rs1189738467 461 dbSNP
rs980641809 468 dbSNP
rs1481022183 474 dbSNP
rs928748712 486 dbSNP
rs867116201 491 dbSNP
rs545333029 496 dbSNP
rs1374851726 497 dbSNP
rs1251512969 501 dbSNP
rs988840814 507 dbSNP
rs931964600 511 dbSNP
rs1257129083 517 dbSNP
rs1223912852 537 dbSNP
rs1475821004 544 dbSNP
rs1172183663 550 dbSNP
rs1373927152 554 dbSNP
rs578149838 560 dbSNP
rs1313828580 561 dbSNP
rs1298826878 569 dbSNP
rs540244228 576 dbSNP
rs1360296392 582 dbSNP
rs778628279 587 dbSNP
rs747845209 588 dbSNP
rs1398409300 589 dbSNP
rs1380971807 599 dbSNP
rs1170362945 613 dbSNP
rs745682721 617 dbSNP
rs1327640974 620 dbSNP
rs900388197 630 dbSNP
rs185209737 640 dbSNP
rs1052012036 641 dbSNP
rs771680276 652 dbSNP
rs1250531825 653 dbSNP
rs1041649453 655 dbSNP
rs188747748 660 dbSNP
rs1237218553 661 dbSNP
rs1204023908 663 dbSNP
rs1280704458 665 dbSNP
rs1254174270 669 dbSNP
rs1232363362 670 dbSNP
rs1485454507 672 dbSNP
rs1203310002 674 dbSNP
rs999988960 684 dbSNP
rs1449130003 689 dbSNP
rs1263818105 692 dbSNP
rs141497444 692 dbSNP
rs1005024369 697 dbSNP
rs1330992583 710 dbSNP
rs1453822753 712 dbSNP
rs1408842750 713 dbSNP
rs1014574630 718 dbSNP
rs1054125507 721 dbSNP
rs1364897091 725 dbSNP
rs777031518 726 dbSNP
rs1393385388 727 dbSNP
rs1379280200 728 dbSNP
rs1455696955 730 dbSNP
rs181212842 735 dbSNP
rs1012565726 739 dbSNP
rs1024366979 743 dbSNP
rs1486131139 745 dbSNP
rs1452175302 749 dbSNP
rs1242383489 750 dbSNP
rs140803671 758 dbSNP
rs1351677469 781 dbSNP
rs868103827 789 dbSNP
rs376766354 793 dbSNP
rs1342496857 795 dbSNP
rs1332546418 801 dbSNP
rs1395841505 806 dbSNP
rs1386272751 815 dbSNP
rs1300641052 816 dbSNP
rs970685230 818 dbSNP
rs1386734394 822 dbSNP
rs980313778 831 dbSNP
rs775337634 859 dbSNP
rs960185658 860 dbSNP
rs1236021316 864 dbSNP
rs1446032463 866 dbSNP
rs141127740 867 dbSNP
rs1186546379 869 dbSNP
rs1316084982 875 dbSNP
rs749233360 880 dbSNP
rs1214448580 897 dbSNP
rs544873393 900 dbSNP
rs920666789 909 dbSNP
rs947379402 911 dbSNP
rs1486131863 912 dbSNP
rs986251964 914 dbSNP
rs565187677 921 dbSNP
rs772109831 926 dbSNP
rs1327446666 928 dbSNP
rs978730604 936 dbSNP
rs527540958 950 dbSNP
rs35180652 963 dbSNP
rs1398634541 971 dbSNP
rs1360476894 979 dbSNP
rs911854084 980 dbSNP
rs921892307 988 dbSNP
rs944733491 991 dbSNP
rs1041986814 993 dbSNP
rs931875441 1000 dbSNP
rs1051631698 1001 dbSNP
rs1469926242 1002 dbSNP
rs1462303377 1008 dbSNP
rs890275604 1020 dbSNP
rs1191249598 1026 dbSNP
rs773345758 1034 dbSNP
rs1036071493 1043 dbSNP
rs898884981 1044 dbSNP
rs553467763 1047 dbSNP
rs1044688197 1048 dbSNP
rs1453448343 1053 dbSNP
rs1287972956 1060 dbSNP
rs906137670 1061 dbSNP
rs1461325023 1063 dbSNP
rs1163473205 1069 dbSNP
rs1260344283 1070 dbSNP
rs766607189 1070 dbSNP
rs1002186296 1072 dbSNP
rs1340418381 1074 dbSNP
rs1284544391 1076 dbSNP
rs1035902095 1080 dbSNP
rs1054240075 1086 dbSNP
rs960488635 1102 dbSNP
rs1471218938 1105 dbSNP
rs1391548424 1113 dbSNP
rs1010376120 1125 dbSNP
rs1402045460 1126 dbSNP
rs1168218198 1131 dbSNP
rs1464939961 1141 dbSNP
rs1020396364 1148 dbSNP
rs1174304553 1187 dbSNP
rs1479045306 1196 dbSNP
rs1389354332 1201 dbSNP
rs1308795447 1204 dbSNP
rs1317314788 1216 dbSNP
rs968768707 1218 dbSNP
rs16891351 1224 dbSNP
rs1197116764 1227 dbSNP
rs1271272965 1228 dbSNP
rs1317761560 1240 dbSNP
rs1264303559 1246 dbSNP
rs1221372987 1252 dbSNP
rs1343512645 1259 dbSNP
rs186202145 1260 dbSNP
rs921917073 1262 dbSNP
rs948445203 1264 dbSNP
rs746516191 1266 dbSNP
rs906821966 1267 dbSNP
rs770290577 1269 dbSNP
rs1206818952 1270 dbSNP
rs1272956496 1273 dbSNP
rs953353661 1276 dbSNP
rs776071033 1278 dbSNP
rs911772636 1283 dbSNP
rs1445756040 1284 dbSNP
rs1406628884 1285 dbSNP
rs1335940267 1287 dbSNP
rs1412638359 1293 dbSNP
rs940534402 1306 dbSNP
rs1015174125 1310 dbSNP
rs1172039984 1332 dbSNP
rs898110635 1349 dbSNP
rs1382393734 1356 dbSNP
rs1250856999 1366 dbSNP
rs1036125427 1368 dbSNP
rs1457490544 1370 dbSNP
rs1212705793 1380 dbSNP
rs994987575 1384 dbSNP
rs1278582899 1385 dbSNP
rs776791658 1392 dbSNP
rs1355301447 1396 dbSNP
rs749774231 1398 dbSNP
rs920362827 1400 dbSNP
rs1475122987 1401 dbSNP
rs529234202 1404 dbSNP
rs1027802854 1409 dbSNP
rs1445596183 1410 dbSNP
rs1358482083 1417 dbSNP
rs549497164 1420 dbSNP
rs1044765180 1425 dbSNP
rs1420713709 1427 dbSNP
rs1362469674 1437 dbSNP
rs1156947306 1445 dbSNP
rs569252702 1447 dbSNP
rs1164818527 1448 dbSNP
rs1353421329 1451 dbSNP
rs1460102362 1454 dbSNP
rs538439616 1458 dbSNP
rs1472040930 1461 dbSNP
rs371476851 1481 dbSNP
rs1218071930 1484 dbSNP
rs1019031857 1492 dbSNP
rs966437779 1494 dbSNP
rs1350883652 1496 dbSNP
rs1215298096 1499 dbSNP
rs1413987962 1508 dbSNP
rs759931961 1517 dbSNP
rs1357240081 1527 dbSNP
rs896042817 1528 dbSNP
rs112356026 1529 dbSNP
rs769167178 1531 dbSNP
rs1305894832 1535 dbSNP
rs1020448886 1545 dbSNP
rs1252147302 1547 dbSNP
rs750307391 1548 dbSNP
rs1485536762 1550 dbSNP
rs1338367331 1551 dbSNP
rs1296371488 1554 dbSNP
rs1419215593 1564 dbSNP
rs915694002 1567 dbSNP
rs534464138 1577 dbSNP
rs1167240456 1581 dbSNP
rs1337966252 1582 dbSNP
rs12643066 1583 dbSNP
rs10013449 1586 dbSNP
rs1479060190 1589 dbSNP
rs1261706775 1599 dbSNP
rs764445422 1604 dbSNP
rs1475783028 1607 dbSNP
rs906983001 1620 dbSNP
rs542633004 1625 dbSNP
rs1266841222 1635 dbSNP
rs1186462240 1643 dbSNP
rs1320761654 1652 dbSNP
rs1029032156 1662 dbSNP
rs1220275125 1663 dbSNP
rs939672166 1664 dbSNP
rs1036724575 1665 dbSNP
rs898184087 1679 dbSNP
rs1172052352 1684 dbSNP
rs1295365646 1689 dbSNP
rs1370844572 1695 dbSNP
rs867378531 1698 dbSNP
rs1027917370 1709 dbSNP
rs556270095 1716 dbSNP
rs987454822 1717 dbSNP
rs1310775199 1723 dbSNP
rs889245308 1730 dbSNP
rs1448648949 1731 dbSNP
rs576007427 1748 dbSNP
rs1434263097 1754 dbSNP
rs1320500183 1758 dbSNP
rs191568539 1761 dbSNP
rs1268775013 1780 dbSNP
rs1188976475 1783 dbSNP
rs911809952 1784 dbSNP
rs564896066 1785 dbSNP
rs1487933389 1791 dbSNP
rs961911309 1793 dbSNP
rs1019439198 1803 dbSNP
rs184212632 1806 dbSNP
rs1298451984 1808 dbSNP
rs1233798406 1810 dbSNP
rs1327299303 1821 dbSNP
rs564593173 1825 dbSNP
rs920415297 1830 dbSNP
rs1031603352 1831 dbSNP
rs1370499285 1832 dbSNP
rs751129475 1833 dbSNP
rs1449461213 1837 dbSNP
rs1282844948 1838 dbSNP
rs749147165 1841 dbSNP
rs957375217 1843 dbSNP
rs562626923 1846 dbSNP
rs1486237911 1847 dbSNP
rs1466964822 1851 dbSNP
rs989984813 1854 dbSNP
rs1215702402 1855 dbSNP
rs1379915873 1864 dbSNP
rs1173308640 1867 dbSNP
rs1240910839 1871 dbSNP
rs915867392 1872 dbSNP
rs930435177 1873 dbSNP
rs1180192568 1875 dbSNP
rs1045218432 1876 dbSNP
rs1456173287 1878 dbSNP
rs1237279290 1879 dbSNP
rs1484596838 1879 dbSNP
rs948549771 1882 dbSNP
rs187219260 1884 dbSNP
rs1208097472 1886 dbSNP
rs1347330946 1901 dbSNP
rs756779642 1907 dbSNP
rs781025186 1912 dbSNP
rs1056111914 1913 dbSNP
rs1242515341 1918 dbSNP
rs896095989 1921 dbSNP
rs1306692958 1926 dbSNP
rs1397020647 1930 dbSNP
rs946270049 1931 dbSNP
rs1453357371 1936 dbSNP
rs1041945060 1939 dbSNP
rs904686753 1941 dbSNP
rs1301662001 1950 dbSNP
rs1396630614 1952 dbSNP
rs1000328073 1953 dbSNP
rs192168631 1960 dbSNP
rs563921484 1963 dbSNP
rs1029498260 1965 dbSNP
rs928357023 1969 dbSNP
rs889175989 1980 dbSNP
rs1379335235 1987 dbSNP
rs1187961086 1999 dbSNP
rs1425396449 2000 dbSNP
rs1009330641 2001 dbSNP
rs1317542841 2003 dbSNP
rs745485929 2033 dbSNP
rs939730983 2037 dbSNP
rs1036796745 2041 dbSNP
rs1286770343 2052 dbSNP
rs919559732 2056 dbSNP
rs930969465 2066 dbSNP
rs1260414769 2070 dbSNP
rs1245965046 2075 dbSNP
rs1018927178 2080 dbSNP
rs1342702137 2092 dbSNP
rs1311030543 2094 dbSNP
rs1414640012 2106 dbSNP
rs1341702040 2110 dbSNP
rs1299454145 2111 dbSNP
rs755919611 2124 dbSNP
rs755115063 2125 dbSNP
rs1383775436 2127 dbSNP
rs1049338720 2128 dbSNP
rs889409573 2132 dbSNP
rs1370366815 2133 dbSNP
rs1008121795 2136 dbSNP
rs1478085717 2158 dbSNP
rs779892831 2159 dbSNP
rs971946602 2171 dbSNP
rs1195912071 2187 dbSNP
rs1305944239 2198 dbSNP
rs1261285625 2205 dbSNP
rs560841125 2207 dbSNP
rs529297396 2234 dbSNP
rs1031717713 2235 dbSNP
rs1233087513 2246 dbSNP
rs73797795 2253 dbSNP
rs1280702509 2267 dbSNP
rs1397585274 2268 dbSNP
rs748968392 2269 dbSNP
rs1217165065 2276 dbSNP
rs1323662529 2277 dbSNP
rs939098789 2284 dbSNP
rs992266155 2293 dbSNP
rs1023289321 2299 dbSNP
rs913565610 2302 dbSNP
rs1465995095 2309 dbSNP
rs1425675874 2313 dbSNP
rs946318733 2322 dbSNP
rs563011354 2327 dbSNP
rs1254559124 2331 dbSNP
rs970025777 2333 dbSNP
rs1041992599 2340 dbSNP
rs1241530185 2341 dbSNP
rs904740701 2342 dbSNP
rs981786206 2344 dbSNP
rs531679624 2353 dbSNP
rs1453500583 2361 dbSNP
rs1405559060 2363 dbSNP
rs1213433997 2371 dbSNP
rs1458546479 2384 dbSNP
rs928460762 2389 dbSNP
rs936179226 2390 dbSNP
rs1402323438 2391 dbSNP
rs768650972 2392 dbSNP
rs1234836655 2406 dbSNP
rs961209113 2410 dbSNP
rs972438227 2411 dbSNP
rs1447235001 2412 dbSNP
rs551971318 2414 dbSNP
rs767779691 2418 dbSNP
rs889222456 2424 dbSNP
rs930958117 2425 dbSNP
rs1425823618 2444 dbSNP
rs1479076180 2469 dbSNP
rs149948238 2470 dbSNP
rs1331836223 2482 dbSNP
rs1441752269 2488 dbSNP
rs1278103948 2495 dbSNP
rs1008969865 2499 dbSNP
rs1197180539 2504 dbSNP
rs1437730100 2511 dbSNP
rs1280014598 2514 dbSNP
rs1201665952 2516 dbSNP
rs1342348692 2518 dbSNP
rs1229519497 2523 dbSNP
rs1378683076 2525 dbSNP
rs1306755597 2527 dbSNP
rs201940049 2527 dbSNP
rs368064275 2527 dbSNP
rs943604982 2530 dbSNP
rs773246610 2531 dbSNP
rs1333509259 2532 dbSNP
rs1373649708 2540 dbSNP
rs1173118870 2544 dbSNP
rs34789260 2551 dbSNP
rs1211215284 2557 dbSNP
rs1175830209 2564 dbSNP
rs1382445956 2564 dbSNP
rs1041033458 2575 dbSNP
rs1238556554 2592 dbSNP
rs1190138553 2593 dbSNP
rs1484982749 2598 dbSNP
rs775777545 2599 dbSNP
rs1018935838 2600 dbSNP
rs1283497905 2600 dbSNP
rs144217548 2600 dbSNP
rs397715832 2600 dbSNP
rs55702242 2600 dbSNP
rs901979249 2600 dbSNP
rs534373489 2601 dbSNP
rs918365789 2601 dbSNP
rs1312321006 2608 dbSNP
rs1451779079 2609 dbSNP
rs200625261 2610 dbSNP
rs1180674540 2611 dbSNP
rs1420439822 2612 dbSNP
rs1230940378 2622 dbSNP
rs1471061421 2623 dbSNP
rs1400349783 2626 dbSNP
rs1182804088 2628 dbSNP
rs182629106 2629 dbSNP
rs1165382723 2634 dbSNP
rs1459819544 2636 dbSNP
rs1474488289 2642 dbSNP
rs1167107401 2643 dbSNP
rs1193726396 2644 dbSNP
rs1489017462 2647 dbSNP
rs1027541865 2649 dbSNP
rs1391579277 2661 dbSNP
rs1239998580 2662 dbSNP
rs1214560478 2666 dbSNP
rs1409587874 2668 dbSNP
rs1226439723 2676 dbSNP
rs1334046235 2681 dbSNP
rs1278834756 2683 dbSNP
rs13116725 2691 dbSNP
rs13148665 2697 dbSNP
rs1423779655 2701 dbSNP
rs1022944529 2703 dbSNP
rs970478299 2705 dbSNP
rs747119594 2709 dbSNP
rs951941153 2710 dbSNP
rs546797050 2716 dbSNP
rs374908138 2723 dbSNP
rs1417757319 2724 dbSNP
rs961197585 2725 dbSNP
rs1354041324 2726 dbSNP
rs200214431 2743 dbSNP
rs972596391 2743 dbSNP
rs186605448 2749 dbSNP
rs952415602 2752 dbSNP
rs1033507088 2759 dbSNP
rs1211579659 2765 dbSNP
rs757033729 2765 dbSNP
rs565119257 2768 dbSNP
rs1258475455 2771 dbSNP
rs1220332345 2776 dbSNP
rs1172023423 2778 dbSNP
rs991922741 2780 dbSNP
rs913613003 2789 dbSNP
rs555843511 2798 dbSNP
rs943703829 2803 dbSNP
rs1295566956 2816 dbSNP
rs945030159 2817 dbSNP
rs770964468 2818 dbSNP
rs1332474946 2840 dbSNP
rs576102787 2853 dbSNP
rs1353311679 2863 dbSNP
rs1169110133 2864 dbSNP
rs1433328142 2866 dbSNP
rs926209998 2871 dbSNP
rs976356842 2877 dbSNP
rs527579226 2888 dbSNP
rs1356496245 2897 dbSNP
rs1194843426 2908 dbSNP
rs1200337959 2918 dbSNP
rs923556957 2932 dbSNP
rs1270526673 2957 dbSNP
rs1053237380 2964 dbSNP
rs934814221 2964 dbSNP
rs1205531138 2965 dbSNP
rs936247302 2972 dbSNP
rs538384325 2973 dbSNP
rs59953655 2973 dbSNP
rs1310412438 2974 dbSNP
rs910711960 2989 dbSNP
rs1393551186 2996 dbSNP
rs1371799402 2997 dbSNP
rs944826667 2998 dbSNP
rs1044883498 3000 dbSNP
rs905826940 3001 dbSNP
rs1003326076 3006 dbSNP
rs1360337594 3014 dbSNP
rs558215646 3035 dbSNP
rs1035605981 3037 dbSNP
rs1190048448 3042 dbSNP
rs1380567675 3043 dbSNP
rs1180250264 3062 dbSNP
rs750339331 3064 dbSNP
rs1417140365 3065 dbSNP
rs1369102456 3066 dbSNP
rs1475166499 3069 dbSNP
rs1166358322 3083 dbSNP
rs1282503884 3084 dbSNP
rs1208873162 3085 dbSNP
rs776890300 3086 dbSNP
rs146523332 3087 dbSNP
rs1347401885 3117 dbSNP
rs993478679 3123 dbSNP
rs1049035020 3140 dbSNP
rs1287079660 3143 dbSNP
rs1241617410 3167 dbSNP
rs1334278658 3168 dbSNP
rs897104173 3169 dbSNP
rs1397069687 3170 dbSNP
rs887722190 3171 dbSNP
rs1357954471 3175 dbSNP
rs1310513715 3185 dbSNP
rs1413691520 3189 dbSNP
rs993984408 3191 dbSNP
rs1026789749 3192 dbSNP
rs563596045 3192 dbSNP
rs1002121489 3194 dbSNP
rs1165246519 3199 dbSNP
rs1033972161 3202 dbSNP
rs1312611454 3202 dbSNP
rs1255379118 3204 dbSNP
rs1185880737 3213 dbSNP
rs1485423051 3215 dbSNP
rs1264001587 3216 dbSNP
rs985187591 3218 dbSNP
rs137999716 3250 dbSNP
rs1260459550 3258 dbSNP
rs1246042404 3266 dbSNP
rs191797654 3267 dbSNP
rs1292045834 3279 dbSNP
rs1232149482 3280 dbSNP
rs976851550 3287 dbSNP
rs1340544043 3291 dbSNP
rs923504544 3292 dbSNP
rs182507014 3299 dbSNP
rs1267908252 3301 dbSNP
rs1020728471 3306 dbSNP
rs187496459 3311 dbSNP
rs966425538 3316 dbSNP
rs1228717927 3333 dbSNP
rs192917488 3337 dbSNP
rs979115238 3345 dbSNP
rs1424360301 3355 dbSNP
rs1195453499 3358 dbSNP
rs1445468616 3359 dbSNP
rs924926753 3376 dbSNP
rs1279319496 3388 dbSNP
rs367905668 3389 dbSNP
rs1202105889 3391 dbSNP
rs986396154 3394 dbSNP
rs947545643 3397 dbSNP
rs1256852414 3399 dbSNP
rs1044485131 3405 dbSNP
rs1446373049 3406 dbSNP
rs910761600 3407 dbSNP
rs1224673779 3425 dbSNP
rs938685126 3442 dbSNP
rs1191033456 3446 dbSNP
rs1293029577 3454 dbSNP
rs1057178308 3462 dbSNP
rs1442651797 3477 dbSNP
rs1450272307 3497 dbSNP
rs944906878 3502 dbSNP
rs1173300370 3514 dbSNP
rs1040497485 3516 dbSNP
rs1393624430 3517 dbSNP
rs759793552 3518 dbSNP
rs1474503428 3519 dbSNP
rs1303919464 3520 dbSNP
rs1384799667 3524 dbSNP
rs1026904616 3537 dbSNP
rs1381025389 3544 dbSNP
rs888283282 3545 dbSNP
rs1315556591 3547 dbSNP
rs1458582135 3547 dbSNP
rs185101388 3550 dbSNP
rs1366761927 3551 dbSNP
rs566220196 3557 dbSNP
rs929381669 3562 dbSNP
rs1049086563 3564 dbSNP
rs1256087291 3574 dbSNP
rs1345455794 3575 dbSNP
rs1235068806 3577 dbSNP
rs770127192 3586 dbSNP
rs543026337 3594 dbSNP
rs1018009476 3595 dbSNP
rs1302370115 3596 dbSNP
rs1447313500 3600 dbSNP
rs965523799 3601 dbSNP
rs1002578725 3609 dbSNP
rs1409309034 3610 dbSNP
rs1349820116 3617 dbSNP
rs1174364513 3618 dbSNP
rs1395794057 3618 dbSNP
rs866856607 3623 dbSNP
rs1030597532 3630 dbSNP
rs775930269 3633 dbSNP
rs1470754829 3634 dbSNP
rs1055056654 3638 dbSNP
rs1203341372 3638 dbSNP
rs988985168 3639 dbSNP
rs1249954998 3646 dbSNP
rs1465433061 3651 dbSNP
rs914867115 3656 dbSNP
rs968906826 3678 dbSNP
rs1251431781 3686 dbSNP
rs1345261313 3688 dbSNP
rs1279239121 3710 dbSNP
rs1435139057 3710 dbSNP
rs980707280 3734 dbSNP
rs1277572971 3748 dbSNP
rs1441333417 3751 dbSNP
rs1177151464 3752 dbSNP
rs1341027450 3753 dbSNP
rs1313527340 3757 dbSNP
rs1416754639 3758 dbSNP
rs1363612835 3761 dbSNP
rs1373864518 3771 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions C8166
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462572. RNA binding protein: AGO2. Condition:C8166 NL4-3 ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_182485 | 3UTR | UGGAAAUAUAUAAUUUUAUGACACUAAUUGCUAAAGUUUAUUUUAUGUUGAAUUAUUUUUGGAGCUGAAAUCUUUGUAAUAUUAAAGCAACUAGUUUCUAAUUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1462572
Method / RBP PAR-CLIP / AGO2
Cell line / Condition C8166 / C8166 NL4-3
Location of target site ENST00000538197.1 | 3UTR | AAAUAUAUAAUUUUAUGACACUAAUUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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