miRTarBase - #MIRT404072


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pre-miRNA Information
pre-miRNA hsa-mir-3119-1   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-1 stem-loop
Comment None
RNA Secondary Structure
pre-miRNA hsa-mir-3119-2   
Genomic Coordinates chr1: 170151378 - 170151462
Description Homo sapiens miR-3119-2 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3119
Sequence 9| UGGCUUUUAACUUUGAUGGC |28
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs976695651 1 dbSNP
rs924732934 1 dbSNP
rs537840374 2 dbSNP
rs1264087496 6 dbSNP
rs1484055858 9 dbSNP
rs1467832924 10 dbSNP
rs1198335970 11 dbSNP
rs1431115212 12 dbSNP
rs1176953550 16 dbSNP
Putative Targets

Gene Information
Gene Symbol ZBTB21   
Synonyms ZNF295
Description zinc finger and BTB domain containing 21
Transcript NM_001098402   
Other Transcripts NM_001098403 , NM_020727   
Expression
Putative miRNA Targets on ZBTB21
3'UTR of ZBTB21
(miRNA target sites are highlighted)		 
>ZBTB21|NM_001098402|3'UTR
   1 AAGACCAACACTTTTTACCTATGGGAGGCAGTCCCCAGATTTCAACCTGAATTGTGAAATGTGTCATAAGAAACAAAATA
  81 TTTTTTAAACAAGAATAATAAAGGTTGGAGATTGTTACGCTTGAAATTAAGTTGGAGGCAAATTGATAATTACTTAGTAA
 161 TGTCCTTAACTTTAGAAATACAGCTTTTAAAATATTGTGGTTCTGGACCTTACAAGAACAAGATGGTTTGATTTCATTAA
 241 TGTTGAAATTGGATTAGTCTTGATTGTGTGCATGGTTCCTCATTCCATGGTGTCAGTATAATCATTTAATTGAGGTTTTT
 321 GGTTTTTTATTGATTAGTGGAATACTGTCGAAGTATTCCTTCTTTTAATTATTTTAGACACTTGAGTTCTAGTTAAATCT
 401 TAACCATGTTCTTAAGTCCAAAATAGGAAGAAGTGGAGTAGTTTGCAGTATTGATTTATATCTTAGACTACTTTAGCAAT
 481 AAAAGATAAATCTCAACTTTAATAAGTTATCCTGACACTTGATAAAAATAAATATTTGGTATTTTGTGGTCATGTAAAAC
 561 TTCTTTTTGTATGAAAATTGTGAGAAATTTAAATCAGCAATAGTAACACTTAGATTTTTATAAACTAACAAAAACTTGCT
 641 CTCAGTCAATATAATAAATGATAGTTAAACTCTAAGGAAGACCTGGGAAATGAAAACAATTTATGGAAGTCCCCTACAGT
 721 CAGTTTATAAGGGCTTCAGTAGTGATAGACATTGTTATAAAAACTTGTACCATGTTACATGTACACTGCACCACAGTCTA
 801 AATTCAGACCAGCATTTGAAGGACTGCACATATTTCATTTCCTCTGATTTATGCTGTCACAAATTGAAAATCTGAGTGTA
 881 GTTAGGACAAAAAACAAAGCTAACCATATGGCACTAATTTTGATTTTAACATTAGTGTAACAAATAAGGTCGGGACATAT
 961 ATTTACATAGATCCCAGACACTCAAGAATTAGCACAGCTGATGTAAAATTCTAAATTACCATTTACTTCCAGATAGAGCA
1041 GAGGAGAAACACCTCACTGCAGTTTCAACATGCTTTCCAAGAACAATATATACGACATATACATTTTCCTGCCTCTCTCT
1121 TGTGACAATTTCTGTTAGAATTTGTTGGGGGTCTGATGGTTAAAATCATGGGCAAGGCCATTCTCTACATCATTGCTTAA
1201 TATTTCAAAAATAGGTATTAGAGCACTATCAGTGGTCCAAAATTAGTTTTAGCTACTTATTTTGCTCCATGGGTTTTGGG
1281 CTTTTCAAAGAATACTATGTATAATTTGTAATTGAAAGCCTTTCAGTAGGATATCCAAAGTTCAATGTGTTTCAAAAGGG
1361 AAAACTTTTACTTGTGGGGGTGGGAGTTAGATGTATTAAAAAAACGAAACTACAAAATCCTTTTAAGAAAGTAATACCAA
1441 TTTAGACTCTAGTTTGTGTTACGAGGTATTCTTTCAAATTTTTTTTAAAAGCCAACTACTGTCATTAAGAAATAATTTTA
1521 GATTTGTGCTCTAGCAGAAAATAACTCTGTACCCATCAATCTTATTGCCAACATTCCATACCAGTGGTAGGAAAGATATT
1601 CTCATTTTTTTTATTGAACCAGACATTTTTATAAAATACTGATTGACTTTGTACATTATGGATATTATATATGAAATTTT
1681 GCCTTGTATTCTTTCACTTGAAAAAACTCCAAAATTCCACAATATTTTAGTAGTTAACTTCCTATTCTTTCTTAAATTTG
1761 ATGGAGAAGGGAAAATAAATTGCAGTTATTGATTCTTGCCATCTTTGTTTTCTTAAAGAAATCTATGCATTTTAAGGATA
1841 AAACTAAAGCATATGGGTTTACATGAAACATCAGGATGGATTATTGTACATTGAATTCATTCCGCGTATAATGTGGTATT
1921 TCTTACTCTGTCCATCTTGGTAGCTGTCACTTCAAAAGAAGACAGTTTCCCTGAGTAATCATCACCTACATGGCCATTAG
2001 AGTATCTATCGGTGATAATTCCATGATACAGAGTATCTTGGCATTATAAATTCAGTATCCCAGGACCTAAACCTTTATGC
2081 TACATTTTCGAAGATTTTTTAAAAATAATATTGTTAATCAGTAAAAAAAAAAAATATTTTTGATCTAAACATAGGTTCTG
2161 CATATCTGTTAGATTTTAAAAATGACTGGTGTTTTGTCTTCACATTTTTGTCTAAGCAAGGAATATAAGATTTCAAATAA
2241 AATTTTGAACCAAAAACATTTATAATGCCGTTCTGGTTTTTCTATTACTTTTTATACTGTACTTTAAAAGCATTAGGCTG
2321 AAAGAGTTTATTTTGGTGGTCAAAAAAAATATGCTTCCACTCATGTAACTATTTTAAATGTTAAGAAGTAAAATAATGAA
2401 AGATATGTTAATTACTTTATTCAGTAAAGTTTTTTAAGAATGTTTATCTCAGCCAGTAGGCAAATACTTGGTGTAAAACA
2481 AGTTGGTCTTAAATTGTTGCAACTCATTAGCTAGTGAAGATATTCATGTAAATATATTTTAGGATTGTAATTAATTTTGA
2561 AAATGTAGAAAGCTCTTTATTCCATGTAAGTATGCAGGATGCCTGCTTTTTTATGCAGTTGTGGAAAGAATGTAAAATGT
2641 TTTAATATATTCTTTGTTAATCTGAGAACTTGATACTGAATCGTTTATGTGGGAGAAGGAAGGAGTAACATAAAACATGT
2721 TTTTATCACTCAAAGTAAGCAATGGAGGTAACAAATATTGTGCATTTTAACAGTAATATTTGAAGATTTGTAGAATATTC
2801 ACCTTTAAAACTAGTTAGTATGCATTTATAATTTTACCAGAATATACAACTAACAATTCAACAGTGATGTTCTTTGCATT
2881 TGTGGGGAGATGTGTGATGTTCTTGGTTTTCTGGTTTGGAATGGAACGTTTATAGCCTTGCCTGTAAAAATGTGCCCCAG
2961 CACTTAATGAGTGACCGTTTGAATCCATATGTAGTCCCATTGGTGCTAATGAGAGTAGCTGCTGTGAAACAGGAATAAAA
3041 TGTGTCTGTTCACGGAGGTGCGGTGTGGATGCACCTACAAGGCCAACTCTCTGATCAGGGTGAGGGAGAGATGGAAGAAT
3121 TAACAGATCTAAAGTTGGCCTTTGTTGTCTCAAATTGGGTTTGTACACACATGCATGCATGTGTGTATACAACTGTAATC
3201 TGGAACTTCAGGAAGTAAAATTATTTGAAGTTTCTTAGTAAAAAGTAATTAGGTATAATTCCAAATAGATTTCTGTATAA
3281 ATTGTATCTAACTGGATTACAAGTCAGTTTGACAATTTACGATGTCTCAGTGATGTTTCTGCAATAATTGTGAAATGCAT
3361 TATTGATTTAAATAATGCTGACACGTACTCTTTAAAAGTGTTCTTTAACACTGACTACTAAACTTTAAGTTTTAAAAAAT
3441 AGGTTTTCATTTATGGCTTTTTGTGGTTTTAGCACTTTAAGAAGTTTAATTTTTTGTAATTTTTAATATGCTCTTTCAGT
3521 GTATCTCAGCGGGTACTCCAGCTTGTGGCATTCCCATGTGACTGGGGAGAAGACAAAATTGGTGTTTAGATTCTGGAGGA
3601 GAAAAAATGAGTTACAATGTCAGGTGTTTTTAAAAATTCCTTTTAGAGACAGTCTTTTGGGAACCAAAGTATTTTACTGT
3681 AAATCTTTAAAATAACAGAATTCAGTGCTCTTTCATTTGTTAATGCTGTCCAGATTTTTCACACAGTTATACTCAGTTAA
3761 TACTAGTTTTCAGAACATTAGTCCAAGGCTATTTCAAGTTTTCCATTGAATATATGCTTATGGTTAAAAGAAAAACGAAT
3841 GGTTTTATAATTCTGTGTATTTTGTCATATGCCTTAGCAGAGTAAGTCATTTTTCCATTTTACTTAGGAATAAGCTTTTT
3921 CGAACTGAAAATTCATGGTAAAATAGGATTTCTATCTAATGTTAATCCATTGCTTATTTGTATTCAATTCCATTGTCTAC
4001 AGTTTGCTTAAATGTTGACTAAGAATGATTGGAGTCAATAAATTTGTACTGTATTTTGCTTCGA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgguAGUUU-----CAAUUUUCGGu 5'
              |||||      ||||||||| 
Target 5' tcttTCAAATTTTTTTTAAAAGCCa 3'
 1470 - 1494 156.00 -11.10
2 
miRNA  3' cgguAGUUUCAAUUUUCGGu 5'
              |:: | ||:|||||| 
Target 5' taatTTGTAATTGAAAGCCt 3'
 1302 - 1321 140.00 -8.40
3 
miRNA  3' cgguaguuucAAUUUUCGgu 5'
                    ||||||||  
Target 5' atactgtactTTAAAAGCat 3'
 2294 - 2313 130.00 -5.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31550200 22 COSMIC
COSN30505968 37 COSMIC
COSN5865633 54 COSMIC
COSN30510055 79 COSMIC
COSN28842951 81 COSMIC
COSN31565269 235 COSMIC
COSN10027048 252 COSMIC
COSN1257029 281 COSMIC
COSN31538044 293 COSMIC
COSN31482329 366 COSMIC
COSN31520098 616 COSMIC
COSN30176712 709 COSMIC
COSN1893648 721 COSMIC
COSN8007977 764 COSMIC
COSN1893647 1291 COSMIC
COSN1893646 1301 COSMIC
COSN17038242 2066 COSMIC
COSN20117022 2123 COSMIC
COSN20117020 2341 COSMIC
COSN1893645 2633 COSMIC
COSN20117014 2683 COSMIC
COSN20093879 2851 COSMIC
COSN6690638 2969 COSMIC
COSN29322226 2977 COSMIC
COSN24824099 3445 COSMIC
COSN31520925 3802 COSMIC
COSN1893644 3809 COSMIC
COSN31534268 3922 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs369206632 1 dbSNP
rs1310006725 3 dbSNP
rs773516659 5 dbSNP
rs767734131 6 dbSNP
rs761914368 7 dbSNP
rs749088760 11 dbSNP
rs774165112 11 dbSNP
rs768624483 16 dbSNP
rs749104022 17 dbSNP
rs775323053 19 dbSNP
rs573606034 21 dbSNP
rs200789853 28 dbSNP
rs780757119 30 dbSNP
rs1270455384 33 dbSNP
rs770441568 34 dbSNP
rs746508799 36 dbSNP
rs779359028 38 dbSNP
rs973126681 41 dbSNP
rs370839109 45 dbSNP
rs1225730464 47 dbSNP
rs1429169650 49 dbSNP
rs185710114 50 dbSNP
rs1294479628 51 dbSNP
rs1198643730 55 dbSNP
rs1247021185 56 dbSNP
rs1260895236 69 dbSNP
rs1184933052 72 dbSNP
rs911577444 78 dbSNP
rs192659705 79 dbSNP
rs1170539928 81 dbSNP
rs929069131 89 dbSNP
rs1489301461 90 dbSNP
rs1424536339 106 dbSNP
rs558121103 111 dbSNP
rs1324804537 118 dbSNP
rs920414141 118 dbSNP
rs1270044235 119 dbSNP
rs538104601 119 dbSNP
rs113350151 128 dbSNP
rs1228736612 138 dbSNP
rs1276104904 140 dbSNP
rs937873810 141 dbSNP
rs1221579495 144 dbSNP
rs1290510504 157 dbSNP
rs3746912 164 dbSNP
rs1190740743 166 dbSNP
rs199790091 170 dbSNP
rs982053430 173 dbSNP
rs36119239 174 dbSNP
rs1450287365 181 dbSNP
rs1227459050 185 dbSNP
rs1325380962 192 dbSNP
rs960251758 195 dbSNP
rs1383406660 197 dbSNP
rs971402060 201 dbSNP
rs535955009 208 dbSNP
rs1393502158 213 dbSNP
rs1399521420 213 dbSNP
rs1318042746 219 dbSNP
rs1389882433 220 dbSNP
rs117381564 224 dbSNP
rs998823723 235 dbSNP
rs967324766 249 dbSNP
rs1379858702 250 dbSNP
rs1389053533 252 dbSNP
rs1024744093 253 dbSNP
rs1284336766 255 dbSNP
rs1372169338 255 dbSNP
rs1325734099 257 dbSNP
rs1203359593 264 dbSNP
rs1283242252 271 dbSNP
rs776450906 274 dbSNP
rs1021666896 275 dbSNP
rs1402788921 280 dbSNP
rs956326789 289 dbSNP
rs1012040621 293 dbSNP
rs1461086501 295 dbSNP
rs899904937 296 dbSNP
rs1370317786 298 dbSNP
rs1469018623 302 dbSNP
rs1158519931 303 dbSNP
rs1413090183 308 dbSNP
rs1040314066 309 dbSNP
rs747503937 310 dbSNP
rs1371411860 321 dbSNP
rs1008379143 322 dbSNP
rs547068206 331 dbSNP
rs567736215 332 dbSNP
rs533375709 333 dbSNP
rs1395142843 334 dbSNP
rs1253363269 345 dbSNP
rs780589198 346 dbSNP
rs1466987605 348 dbSNP
rs1259545193 349 dbSNP
rs570695256 350 dbSNP
rs1329517681 353 dbSNP
rs1338115163 366 dbSNP
rs1229991941 369 dbSNP
rs570232871 372 dbSNP
rs900714783 380 dbSNP
rs1461017199 386 dbSNP
rs1249174726 401 dbSNP
rs1258292779 406 dbSNP
rs1436167679 415 dbSNP
rs1017800479 416 dbSNP
rs890105015 418 dbSNP
rs551718848 428 dbSNP
rs1174699511 434 dbSNP
rs1349282940 434 dbSNP
rs1303098122 458 dbSNP
rs1439093164 465 dbSNP
rs1379609422 466 dbSNP
rs1403642088 476 dbSNP
rs928975072 477 dbSNP
rs918889604 479 dbSNP
rs1037497467 483 dbSNP
rs1281102616 493 dbSNP
rs1391052171 497 dbSNP
rs1394404855 500 dbSNP
rs1234164918 501 dbSNP
rs1174457939 510 dbSNP
rs1337773185 511 dbSNP
rs117051295 519 dbSNP
rs534858794 523 dbSNP
rs941810660 524 dbSNP
rs926464887 526 dbSNP
rs1484303954 532 dbSNP
rs1197927978 534 dbSNP
rs1268559258 540 dbSNP
rs1434127404 543 dbSNP
rs533790014 546 dbSNP
rs949338611 561 dbSNP
rs779166908 562 dbSNP
rs1234412374 565 dbSNP
rs1167385901 566 dbSNP
rs1370673536 570 dbSNP
rs1431502699 571 dbSNP
rs991758528 579 dbSNP
rs938498838 593 dbSNP
rs1387135062 600 dbSNP
rs1303215895 612 dbSNP
rs1324886073 613 dbSNP
rs1227994411 630 dbSNP
rs1275392112 636 dbSNP
rs531080090 638 dbSNP
rs1344436780 640 dbSNP
rs928571266 660 dbSNP
rs1220822837 666 dbSNP
rs144227902 668 dbSNP
rs989219830 668 dbSNP
rs1211987241 674 dbSNP
rs1260139320 683 dbSNP
rs189280341 687 dbSNP
rs1426330004 688 dbSNP
rs1033050483 692 dbSNP
rs1390194067 697 dbSNP
rs371442096 699 dbSNP
rs967359091 700 dbSNP
rs1161204225 703 dbSNP
rs1349216595 706 dbSNP
rs1201721943 707 dbSNP
rs1458389368 709 dbSNP
rs1348000845 711 dbSNP
rs1382548175 712 dbSNP
rs867320351 717 dbSNP
rs1434582233 718 dbSNP
rs978845512 719 dbSNP
rs1367358125 722 dbSNP
rs753435940 742 dbSNP
rs990162919 746 dbSNP
rs528881746 749 dbSNP
rs1356227505 762 dbSNP
rs1280565389 764 dbSNP
rs1247669057 767 dbSNP
rs1259285746 770 dbSNP
rs1238595035 779 dbSNP
rs1464742650 781 dbSNP
rs1207638907 792 dbSNP
rs1334254489 793 dbSNP
rs964499194 794 dbSNP
rs116730541 804 dbSNP
rs890713273 805 dbSNP
rs1412493575 809 dbSNP
rs1424281294 814 dbSNP
rs540317480 819 dbSNP
rs1008826644 824 dbSNP
rs1374931703 828 dbSNP
rs753169115 834 dbSNP
rs891276068 841 dbSNP
rs868206418 844 dbSNP
rs1434379416 849 dbSNP
rs1025904920 851 dbSNP
rs1409886975 860 dbSNP
rs548509481 862 dbSNP
rs577929333 872 dbSNP
rs1380011573 877 dbSNP
rs898743367 885 dbSNP
rs1305504319 887 dbSNP
rs1329154223 894 dbSNP
rs1229384401 896 dbSNP
rs1330730175 899 dbSNP
rs993569077 899 dbSNP
rs898859192 903 dbSNP
rs1158975295 904 dbSNP
rs557957337 905 dbSNP
rs115689649 906 dbSNP
rs1249523841 907 dbSNP
rs937759431 913 dbSNP
rs1159597811 914 dbSNP
rs904995633 916 dbSNP
rs1046667012 917 dbSNP
rs2839432 932 dbSNP
rs555626168 934 dbSNP
rs756047702 935 dbSNP
rs894227885 937 dbSNP
rs1485672516 939 dbSNP
rs1256211047 941 dbSNP
rs1411018683 948 dbSNP
rs535527285 948 dbSNP
rs1055523181 951 dbSNP
rs192736081 952 dbSNP
rs562706130 960 dbSNP
rs1211601055 967 dbSNP
rs1271920696 973 dbSNP
rs187230083 983 dbSNP
rs73908008 989 dbSNP
rs1253634825 994 dbSNP
rs925980842 1003 dbSNP
rs1286109290 1013 dbSNP
rs1426125044 1020 dbSNP
rs1234147541 1021 dbSNP
rs139296846 1036 dbSNP
rs964779103 1039 dbSNP
rs151281239 1042 dbSNP
rs1310398251 1043 dbSNP
rs565395797 1048 dbSNP
rs752656562 1052 dbSNP
rs954940798 1053 dbSNP
rs375864028 1057 dbSNP
rs964050998 1061 dbSNP
rs1318912034 1070 dbSNP
rs1367839713 1073 dbSNP
rs540223378 1076 dbSNP
rs1294708133 1078 dbSNP
rs963014288 1079 dbSNP
rs986865179 1080 dbSNP
rs537354439 1083 dbSNP
rs751314766 1088 dbSNP
rs1382513069 1090 dbSNP
rs375880099 1093 dbSNP
rs568709358 1094 dbSNP
rs1449856383 1097 dbSNP
rs182878558 1098 dbSNP
rs1247113115 1099 dbSNP
rs73221475 1100 dbSNP
rs894099776 1120 dbSNP
rs1055957554 1121 dbSNP
rs545445377 1121 dbSNP
rs1351736086 1122 dbSNP
rs1170632479 1128 dbSNP
rs77180325 1129 dbSNP
rs1405343124 1144 dbSNP
rs1324582324 1151 dbSNP
rs1243160248 1156 dbSNP
rs1442580647 1159 dbSNP
rs1318132438 1168 dbSNP
rs1364097985 1175 dbSNP
rs760786344 1179 dbSNP
rs906959143 1187 dbSNP
rs192261530 1204 dbSNP
rs371586236 1206 dbSNP
rs1214552217 1207 dbSNP
rs187707800 1208 dbSNP
rs914488734 1211 dbSNP
rs1290262062 1212 dbSNP
rs1453124122 1215 dbSNP
rs1206984581 1216 dbSNP
rs1247632614 1217 dbSNP
rs751767308 1217 dbSNP
rs1054356326 1218 dbSNP
rs1465560084 1220 dbSNP
rs1220490995 1222 dbSNP
rs1366835768 1222 dbSNP
rs1362782352 1224 dbSNP
rs936610764 1226 dbSNP
rs1164359021 1227 dbSNP
rs1231242871 1230 dbSNP
rs1416326036 1240 dbSNP
rs1270627553 1242 dbSNP
rs370919283 1249 dbSNP
rs1324453083 1255 dbSNP
rs911192179 1257 dbSNP
rs112019242 1265 dbSNP
rs955483048 1267 dbSNP
rs943419993 1269 dbSNP
rs1319674520 1270 dbSNP
rs544458924 1272 dbSNP
rs1393337953 1274 dbSNP
rs1447120529 1281 dbSNP
rs1284712708 1282 dbSNP
rs1162388433 1288 dbSNP
rs987609437 1289 dbSNP
rs1419630485 1290 dbSNP
rs774709178 1293 dbSNP
rs1226329001 1294 dbSNP
rs1186433002 1295 dbSNP
rs575393405 1297 dbSNP
rs117131870 1298 dbSNP
rs962846141 1301 dbSNP
rs1194713846 1307 dbSNP
rs184012580 1308 dbSNP
rs1441922215 1311 dbSNP
rs542090712 1312 dbSNP
rs963627936 1319 dbSNP
rs1251326071 1320 dbSNP
rs1015897209 1325 dbSNP
rs748932059 1326 dbSNP
rs1413205635 1328 dbSNP
rs969075691 1345 dbSNP
rs1159950392 1346 dbSNP
rs1025131244 1353 dbSNP
rs1413401857 1356 dbSNP
rs1334305713 1358 dbSNP
rs368061733 1363 dbSNP
rs1340017784 1364 dbSNP
rs573170303 1368 dbSNP
rs1350906850 1370 dbSNP
rs1002475214 1371 dbSNP
rs1254483270 1375 dbSNP
rs1338282879 1376 dbSNP
rs1441300784 1377 dbSNP
rs1201087338 1379 dbSNP
rs1369983540 1380 dbSNP
rs777614936 1393 dbSNP
rs892271126 1402 dbSNP
rs755650117 1404 dbSNP
rs906990135 1405 dbSNP
rs552918946 1406 dbSNP
rs1010044079 1412 dbSNP
rs797017522 1414 dbSNP
rs539547433 1417 dbSNP
rs1376779785 1418 dbSNP
rs1354611084 1421 dbSNP
rs1307353412 1426 dbSNP
rs1371162822 1432 dbSNP
rs1392907163 1439 dbSNP
rs1298987027 1440 dbSNP
rs1054789218 1443 dbSNP
rs1305662745 1450 dbSNP
rs1204987566 1451 dbSNP
rs1408694936 1451 dbSNP
rs747617664 1454 dbSNP
rs1481937980 1458 dbSNP
rs911129646 1462 dbSNP
rs142361492 1463 dbSNP
rs933968234 1469 dbSNP
rs918691718 1474 dbSNP
rs972772865 1477 dbSNP
rs1454054133 1479 dbSNP
rs1167480964 1487 dbSNP
rs1393669213 1487 dbSNP
rs1447126982 1487 dbSNP
rs919384336 1497 dbSNP
rs1291536729 1498 dbSNP
rs972227254 1498 dbSNP
rs1481119864 1501 dbSNP
rs780865974 1504 dbSNP
rs1328183215 1513 dbSNP
rs1387510578 1513 dbSNP
rs1363370064 1514 dbSNP
rs201647386 1528 dbSNP
rs10568487 1549 dbSNP
rs190930340 1549 dbSNP
rs538860517 1551 dbSNP
rs959673384 1555 dbSNP
rs186025464 1559 dbSNP
rs992290837 1565 dbSNP
rs1002506449 1566 dbSNP
rs971015007 1568 dbSNP
rs114605784 1569 dbSNP
rs1299012880 1570 dbSNP
rs183121328 1577 dbSNP
rs1373671414 1580 dbSNP
rs1248142853 1584 dbSNP
rs892870725 1585 dbSNP
rs535299696 1591 dbSNP
rs1297277641 1596 dbSNP
rs1367612245 1608 dbSNP
rs1054337130 1612 dbSNP
rs1000653699 1613 dbSNP
rs903733718 1613 dbSNP
rs1434694170 1614 dbSNP
rs1007120702 1622 dbSNP
rs889739604 1623 dbSNP
rs1050975803 1625 dbSNP
rs889084562 1631 dbSNP
rs1312638883 1632 dbSNP
rs1393650207 1639 dbSNP
rs1161783565 1645 dbSNP
rs1266670623 1651 dbSNP
rs576487615 1652 dbSNP
rs1207743177 1653 dbSNP
rs1242134844 1654 dbSNP
rs566349807 1655 dbSNP
rs897906706 1673 dbSNP
rs1407467937 1690 dbSNP
rs1175731447 1706 dbSNP
rs369571175 1707 dbSNP
rs561773525 1707 dbSNP
rs942162406 1712 dbSNP
rs558232329 1714 dbSNP
rs1409523712 1720 dbSNP
rs1456866000 1721 dbSNP
rs933979944 1729 dbSNP
rs897123808 1732 dbSNP
rs1037024096 1739 dbSNP
rs941493203 1740 dbSNP
rs1380489393 1745 dbSNP
rs1417198300 1750 dbSNP
rs1286795691 1754 dbSNP
rs917540842 1767 dbSNP
rs1227329000 1771 dbSNP
rs1254005150 1780 dbSNP
rs909938394 1789 dbSNP
rs1284518645 1790 dbSNP
rs991842481 1801 dbSNP
rs991031517 1804 dbSNP
rs1254942347 1806 dbSNP
rs1212962840 1812 dbSNP
rs533549354 1818 dbSNP
rs760393846 1822 dbSNP
rs1177636580 1828 dbSNP
rs1410414426 1830 dbSNP
rs1356799383 1831 dbSNP
rs1175402220 1834 dbSNP
rs1359840575 1850 dbSNP
rs546580762 1851 dbSNP
rs190267909 1856 dbSNP
rs115510649 1857 dbSNP
rs971046022 1862 dbSNP
rs1375021636 1867 dbSNP
rs891045182 1875 dbSNP
rs1299928168 1885 dbSNP
rs1291166400 1886 dbSNP
rs1347989110 1888 dbSNP
rs1212850010 1892 dbSNP
rs767101714 1896 dbSNP
rs148760982 1903 dbSNP
rs988882922 1904 dbSNP
rs530651936 1905 dbSNP
rs2839431 1906 dbSNP
rs1006739379 1908 dbSNP
rs889575630 1913 dbSNP
rs8127147 1916 dbSNP
rs1187376002 1918 dbSNP
rs1036428697 1925 dbSNP
rs764261704 1940 dbSNP
rs868310554 1942 dbSNP
rs897070066 1953 dbSNP
rs8129512 1956 dbSNP
rs1411050383 1960 dbSNP
rs887917246 1960 dbSNP
rs185873343 1962 dbSNP
rs145612449 1964 dbSNP
rs1292585277 1969 dbSNP
rs867979089 1970 dbSNP
rs1055594375 1975 dbSNP
rs181553062 1989 dbSNP
rs1215111622 1990 dbSNP
rs1341322145 1990 dbSNP
rs1057153152 1993 dbSNP
rs928102408 1997 dbSNP
rs1319712335 2004 dbSNP
rs935002536 2009 dbSNP
rs1253856584 2010 dbSNP
rs923634283 2011 dbSNP
rs557070482 2012 dbSNP
rs775490078 2014 dbSNP
rs1475997810 2015 dbSNP
rs767499832 2024 dbSNP
rs1338223220 2026 dbSNP
rs537520724 2030 dbSNP
rs1405135048 2043 dbSNP
rs985307109 2047 dbSNP
rs1442691324 2048 dbSNP
rs1317898581 2052 dbSNP
rs914138905 2054 dbSNP
rs1383328587 2060 dbSNP
rs988525499 2062 dbSNP
rs140241861 2067 dbSNP
rs1271857409 2073 dbSNP
rs1376964072 2080 dbSNP
rs1032782765 2089 dbSNP
rs1337167033 2093 dbSNP
rs985577533 2095 dbSNP
rs953765958 2100 dbSNP
rs1463192311 2101 dbSNP
rs1029540080 2102 dbSNP
rs997999503 2108 dbSNP
rs1195500270 2111 dbSNP
rs1236216596 2113 dbSNP
rs569196822 2113 dbSNP
rs1189044746 2117 dbSNP
rs1456402434 2118 dbSNP
rs1374872596 2119 dbSNP
rs1172425907 2121 dbSNP
rs1420503240 2121 dbSNP
rs1429114680 2122 dbSNP
rs1156514627 2123 dbSNP
rs1383878513 2123 dbSNP
rs1400773068 2127 dbSNP
rs1319778779 2132 dbSNP
rs550762445 2133 dbSNP
rs1006276547 2135 dbSNP
rs1014946737 2135 dbSNP
rs1206949786 2135 dbSNP
rs1293624757 2135 dbSNP
rs397867393 2135 dbSNP
rs750798837 2135 dbSNP
rs887865185 2135 dbSNP
rs961312089 2135 dbSNP
rs1045597846 2136 dbSNP
rs1015897521 2137 dbSNP
rs1212243665 2138 dbSNP
rs555099414 2142 dbSNP
rs1056702399 2151 dbSNP
rs1362842225 2154 dbSNP
rs189199829 2162 dbSNP
rs566417744 2163 dbSNP
rs1399458453 2165 dbSNP
rs770557429 2173 dbSNP
rs1433957526 2174 dbSNP
rs1313410708 2186 dbSNP
rs1377270787 2188 dbSNP
rs1327989438 2189 dbSNP
rs923573105 2189 dbSNP
rs935602957 2189 dbSNP
rs1005568806 2200 dbSNP
rs946422889 2201 dbSNP
rs1252624184 2203 dbSNP
rs1347252267 2204 dbSNP
rs1235205581 2205 dbSNP
rs1283076144 2205 dbSNP
rs1228756647 2211 dbSNP
rs910962283 2217 dbSNP
rs888406491 2221 dbSNP
rs985642857 2223 dbSNP
rs559290596 2232 dbSNP
rs187273184 2242 dbSNP
rs532357231 2242 dbSNP
rs1307475539 2243 dbSNP
rs955215751 2258 dbSNP
rs922445709 2260 dbSNP
rs1375361208 2264 dbSNP
rs972647705 2264 dbSNP
rs368585519 2269 dbSNP
rs760081835 2270 dbSNP
rs182207322 2273 dbSNP
rs530598592 2284 dbSNP
rs1297354308 2291 dbSNP
rs1396965198 2292 dbSNP
rs1002734483 2298 dbSNP
rs1321826782 2302 dbSNP
rs906625107 2304 dbSNP
rs748719538 2305 dbSNP
rs1325409909 2306 dbSNP
rs774777147 2306 dbSNP
rs1227379236 2307 dbSNP
rs1252188261 2310 dbSNP
rs961292472 2310 dbSNP
rs945536622 2312 dbSNP
rs568162548 2313 dbSNP
rs1014895762 2316 dbSNP
rs1006224275 2322 dbSNP
rs1193679058 2327 dbSNP
rs1398716399 2334 dbSNP
rs1447521447 2340 dbSNP
rs1298857398 2342 dbSNP
rs1373643377 2350 dbSNP
rs146587122 2350 dbSNP
rs1054425065 2351 dbSNP
rs189314125 2352 dbSNP
rs1327956507 2358 dbSNP
rs1166673405 2365 dbSNP
rs1035603327 2367 dbSNP
rs1296910612 2368 dbSNP
rs1328762466 2373 dbSNP
rs999690293 2374 dbSNP
rs1455366402 2378 dbSNP
rs2839430 2386 dbSNP
rs1213952673 2389 dbSNP
rs1274433074 2396 dbSNP
rs1484605159 2397 dbSNP
rs1192614791 2403 dbSNP
rs1185490438 2404 dbSNP
rs1262320746 2406 dbSNP
rs1449556630 2418 dbSNP
rs1185095769 2420 dbSNP
rs985139836 2420 dbSNP
rs953798108 2422 dbSNP
rs922332033 2429 dbSNP
rs976594188 2431 dbSNP
rs1167371410 2435 dbSNP
rs1252023190 2436 dbSNP
rs1453126132 2442 dbSNP
rs1289568270 2455 dbSNP
rs1387737540 2461 dbSNP
rs559267356 2462 dbSNP
rs1015513345 2467 dbSNP
rs1005847377 2475 dbSNP
rs1480045279 2479 dbSNP
rs946371990 2498 dbSNP
rs952651991 2499 dbSNP
rs545680269 2505 dbSNP
rs1294729505 2522 dbSNP
rs889472275 2523 dbSNP
rs532388986 2526 dbSNP
rs1260831934 2528 dbSNP
rs1034137280 2530 dbSNP
rs1208651823 2535 dbSNP
rs55990108 2536 dbSNP
rs147136237 2542 dbSNP
rs1189878580 2543 dbSNP
rs1406038025 2545 dbSNP
rs1303214913 2554 dbSNP
rs1418764442 2559 dbSNP
rs1231292061 2562 dbSNP
rs1159874133 2564 dbSNP
rs939875209 2571 dbSNP
rs1464933438 2573 dbSNP
rs1329816175 2584 dbSNP
rs574836225 2592 dbSNP
rs1009712476 2601 dbSNP
rs1306606465 2607 dbSNP
rs1306046730 2613 dbSNP
rs1222869967 2618 dbSNP
rs1307010062 2621 dbSNP
rs892598227 2622 dbSNP
rs554757489 2628 dbSNP
rs780752589 2630 dbSNP
rs1024077402 2631 dbSNP
rs1237744829 2642 dbSNP
rs1171835879 2649 dbSNP
rs1178010608 2652 dbSNP
rs1476932668 2660 dbSNP
rs1452643446 2663 dbSNP
rs1365144213 2664 dbSNP
rs1396176088 2669 dbSNP
rs1437155911 2671 dbSNP
rs149465166 2676 dbSNP
rs1354325079 2678 dbSNP
rs1440932520 2680 dbSNP
rs775243338 2683 dbSNP
rs66463392 2686 dbSNP
rs10701032 2687 dbSNP
rs58210734 2687 dbSNP
rs147003446 2689 dbSNP
rs1213634931 2690 dbSNP
rs1348455648 2695 dbSNP
rs1035148653 2697 dbSNP
rs1270551577 2704 dbSNP
rs117353017 2705 dbSNP
rs1306711215 2707 dbSNP
rs999639268 2709 dbSNP
rs1234794862 2710 dbSNP
rs1280030348 2713 dbSNP
rs932275547 2714 dbSNP
rs1193041610 2719 dbSNP
rs1022484017 2725 dbSNP
rs1455917784 2732 dbSNP
rs922364549 2733 dbSNP
rs1419505794 2736 dbSNP
rs1353324903 2738 dbSNP
rs1316040004 2740 dbSNP
rs1173056023 2741 dbSNP
rs1401988925 2742 dbSNP
rs1279998946 2746 dbSNP
rs976458463 2747 dbSNP
rs1459577238 2748 dbSNP
rs1280290989 2755 dbSNP
rs1324581477 2758 dbSNP
rs1371111516 2762 dbSNP
rs1268332462 2769 dbSNP
rs1442927510 2769 dbSNP
rs1011130678 2780 dbSNP
rs572655249 2782 dbSNP
rs559326616 2789 dbSNP
rs889429182 2792 dbSNP
rs1332887632 2800 dbSNP
rs137929982 2802 dbSNP
rs983968711 2803 dbSNP
rs150736282 2818 dbSNP
rs184385508 2820 dbSNP
rs1416522621 2822 dbSNP
rs191488908 2824 dbSNP
rs933716319 2826 dbSNP
rs550393043 2828 dbSNP
rs151319052 2841 dbSNP
rs1036817867 2848 dbSNP
rs1394849662 2853 dbSNP
rs1406577849 2862 dbSNP
rs1333466330 2872 dbSNP
rs1412479060 2875 dbSNP
rs980753753 2881 dbSNP
rs141210677 2887 dbSNP
rs138633622 2888 dbSNP
rs386818863 2889 dbSNP
rs1456435834 2890 dbSNP
rs531072240 2892 dbSNP
rs892546745 2896 dbSNP
rs1032945904 2897 dbSNP
rs1203439733 2902 dbSNP
rs1283695162 2905 dbSNP
rs1448036063 2912 dbSNP
rs1001026992 2919 dbSNP
rs188510819 2928 dbSNP
rs1050642731 2932 dbSNP
rs1237374204 2943 dbSNP
rs916544070 2951 dbSNP
rs758588789 2953 dbSNP
rs991223722 2955 dbSNP
rs693386 2969 dbSNP
rs1156250770 2970 dbSNP
rs1406623279 2971 dbSNP
rs900803872 2976 dbSNP
rs978170108 2977 dbSNP
rs1040725655 2989 dbSNP
rs1413921650 2996 dbSNP
rs939791593 3000 dbSNP
rs908268929 3003 dbSNP
rs1237189077 3004 dbSNP
rs1204742349 3016 dbSNP
rs779024477 3017 dbSNP
rs1225605151 3022 dbSNP
rs984390329 3033 dbSNP
rs1339654632 3035 dbSNP
rs1233931045 3038 dbSNP
rs1260077386 3042 dbSNP
rs552077982 3045 dbSNP
rs1443727256 3046 dbSNP
rs931134297 3051 dbSNP
rs375915859 3053 dbSNP
rs1445803093 3058 dbSNP
rs372617024 3061 dbSNP
rs970712176 3062 dbSNP
rs1397452608 3063 dbSNP
rs779897546 3071 dbSNP
rs1434064919 3073 dbSNP
rs144830955 3075 dbSNP
rs1028613460 3082 dbSNP
rs957034616 3086 dbSNP
rs1318776872 3089 dbSNP
rs1433880426 3090 dbSNP
rs998252617 3093 dbSNP
rs900866341 3105 dbSNP
rs367544155 3110 dbSNP
rs1235684286 3112 dbSNP
rs1347729390 3112 dbSNP
rs530039111 3120 dbSNP
rs1337846851 3123 dbSNP
rs1195642907 3128 dbSNP
rs1271821282 3129 dbSNP
rs545148604 3133 dbSNP
rs1461449245 3135 dbSNP
rs889251080 3137 dbSNP
rs1250627114 3144 dbSNP
rs1029255555 3146 dbSNP
rs997801546 3147 dbSNP
rs1379368377 3153 dbSNP
rs1402435975 3154 dbSNP
rs1161964314 3160 dbSNP
rs902094046 3164 dbSNP
rs1167160743 3166 dbSNP
rs1397429689 3172 dbSNP
rs888254410 3173 dbSNP
rs1323903720 3175 dbSNP
rs1243033020 3177 dbSNP
rs750170034 3179 dbSNP
rs1304030464 3185 dbSNP
rs117768481 3192 dbSNP
rs1463846342 3193 dbSNP
rs1318117129 3195 dbSNP
rs764852801 3195 dbSNP
rs1214566901 3197 dbSNP
rs577862644 3200 dbSNP
rs530015872 3201 dbSNP
rs1048122366 3206 dbSNP
rs1269347790 3209 dbSNP
rs915803901 3212 dbSNP
rs778693652 3213 dbSNP
rs1478886331 3217 dbSNP
rs1163044108 3220 dbSNP
rs939328890 3229 dbSNP
rs926446301 3239 dbSNP
rs980567452 3245 dbSNP
rs141106750 3248 dbSNP
rs978117806 3252 dbSNP
rs530756814 3253 dbSNP
rs1382182358 3255 dbSNP
rs572694021 3261 dbSNP
rs184113877 3265 dbSNP
rs1342782786 3270 dbSNP
rs988113042 3275 dbSNP
rs559164470 3277 dbSNP
rs966773708 3280 dbSNP
rs1327434240 3284 dbSNP
rs1291044467 3288 dbSNP
rs1333765358 3292 dbSNP
rs776417974 3296 dbSNP
rs956708115 3296 dbSNP
rs1463595622 3303 dbSNP
rs915371048 3320 dbSNP
rs989605663 3321 dbSNP
rs1348790032 3331 dbSNP
rs11702690 3336 dbSNP
rs1411174798 3342 dbSNP
rs576768058 3344 dbSNP
rs953579399 3346 dbSNP
rs1185588576 3354 dbSNP
rs192007049 3359 dbSNP
rs1475674375 3360 dbSNP
rs997667472 3361 dbSNP
rs1166946652 3365 dbSNP
rs537092872 3367 dbSNP
rs1003933070 3372 dbSNP
rs1289966071 3376 dbSNP
rs1363070289 3384 dbSNP
rs1413298704 3385 dbSNP
rs1312697897 3391 dbSNP
rs1354388911 3392 dbSNP
rs1396261331 3397 dbSNP
rs888192168 3400 dbSNP
rs1397333145 3403 dbSNP
rs574326824 3405 dbSNP
rs753851644 3408 dbSNP
rs1237771628 3417 dbSNP
rs764052982 3417 dbSNP
rs1286617302 3426 dbSNP
rs1355815471 3427 dbSNP
rs1013149477 3439 dbSNP
rs1208406811 3440 dbSNP
rs1256573446 3441 dbSNP
rs1194495868 3442 dbSNP
rs966313513 3448 dbSNP
rs554667127 3450 dbSNP
rs370397268 3451 dbSNP
rs1015157511 3453 dbSNP
rs1004305438 3457 dbSNP
rs1418565488 3473 dbSNP
rs1245036675 3475 dbSNP
rs886740237 3478 dbSNP
rs1438499378 3479 dbSNP
rs1057409515 3481 dbSNP
rs534388151 3483 dbSNP
rs1204368067 3491 dbSNP
rs1339792212 3496 dbSNP
rs1305438670 3498 dbSNP
rs1370785910 3506 dbSNP
rs565543503 3508 dbSNP
rs1219415510 3511 dbSNP
rs1378956086 3516 dbSNP
rs938624703 3518 dbSNP
rs188468578 3520 dbSNP
rs927934011 3529 dbSNP
rs1249815342 3530 dbSNP
rs1480452673 3533 dbSNP
rs1443655078 3536 dbSNP
rs540356977 3538 dbSNP
rs1453045398 3541 dbSNP
rs551914710 3547 dbSNP
rs538438880 3550 dbSNP
rs945418737 3560 dbSNP
rs1044901895 3564 dbSNP
rs1046562 3571 dbSNP
rs1029736893 3591 dbSNP
rs1352360290 3598 dbSNP
rs1461190421 3608 dbSNP
rs915318879 3614 dbSNP
rs949191982 3616 dbSNP
rs528388666 3617 dbSNP
rs989609808 3619 dbSNP
rs549785041 3631 dbSNP
rs1302575216 3637 dbSNP
rs1377615111 3645 dbSNP
rs1052320772 3647 dbSNP
rs1220708318 3648 dbSNP
rs1432993541 3650 dbSNP
rs1423281957 3655 dbSNP
rs1179177788 3659 dbSNP
rs935336478 3666 dbSNP
rs183927366 3669 dbSNP
rs1199510278 3676 dbSNP
rs979839041 3681 dbSNP
rs561091694 3692 dbSNP
rs953512169 3693 dbSNP
rs759580265 3698 dbSNP
rs775255427 3700 dbSNP
rs965667103 3708 dbSNP
rs1479306080 3718 dbSNP
rs1185091156 3732 dbSNP
rs1419264469 3743 dbSNP
rs1477255182 3751 dbSNP
rs1170948342 3754 dbSNP
rs921999318 3765 dbSNP
rs976262536 3777 dbSNP
rs966178386 3784 dbSNP
rs547892380 3785 dbSNP
rs1005103551 3797 dbSNP
rs527737448 3809 dbSNP
rs952391589 3812 dbSNP
rs1350358310 3829 dbSNP
rs1026672723 3836 dbSNP
rs752072850 3840 dbSNP
rs1275993529 3841 dbSNP
rs1286843920 3842 dbSNP
rs138155455 3850 dbSNP
rs545656325 3853 dbSNP
rs193110124 3854 dbSNP
rs1035535709 3855 dbSNP
rs1044768184 3867 dbSNP
rs563222499 3870 dbSNP
rs1287200316 3871 dbSNP
rs1214286262 3878 dbSNP
rs557850640 3881 dbSNP
rs1243949318 3884 dbSNP
rs1198152386 3885 dbSNP
rs1408510793 3887 dbSNP
rs1425289187 3889 dbSNP
rs200774845 3906 dbSNP
rs767309263 3907 dbSNP
rs1413906301 3909 dbSNP
rs896288520 3910 dbSNP
rs768531698 3921 dbSNP
rs377223956 3922 dbSNP
rs1359878571 3924 dbSNP
rs1400348018 3928 dbSNP
rs867611879 3935 dbSNP
rs903106034 3938 dbSNP
rs143643239 3939 dbSNP
rs945366464 3940 dbSNP
rs115807607 3946 dbSNP
rs1222196735 3947 dbSNP
rs1411290426 3954 dbSNP
rs1054258389 3961 dbSNP
rs1180168873 3963 dbSNP
rs17114139 3972 dbSNP
rs571850829 3982 dbSNP
rs773649236 3985 dbSNP
rs976952124 3986 dbSNP
rs1473479938 3987 dbSNP
rs1175013093 3999 dbSNP
rs557022216 4002 dbSNP
rs770353179 4003 dbSNP
rs558228265 4007 dbSNP
rs1182389315 4021 dbSNP
rs1482797093 4026 dbSNP
rs1235588505 4038 dbSNP
rs908779188 4041 dbSNP
rs1373396357 4044 dbSNP
rs1413767074 4045 dbSNP
rs1335092441 4050 dbSNP
rs983053902 4062 dbSNP
rs538474071 4063 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions HEK293
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM545216. RNA binding protein: AGO2. Condition:miR-124 transfection ...

- Hafner M; Landthaler M; Burger L; Khorshid et al., 2010, Cell.

Article - Hafner M; Landthaler M; Burger L; Khorshid et al.
- Cell, 2010
RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome-wide the binding sites of cellular RBPs and miRNPs. The crosslinked sites are revealed by thymidine to cytidine transitions in the cDNAs prepared from immunopurified RNPs of 4-thiouridine-treated cells. We determined the binding sites and regulatory consequences for several intensely studied RBPs and miRNPs, including PUM2, QKI, IGF2BP1-3, AGO/EIF2C1-4 and TNRC6A-C. Our study revealed that these factors bind thousands of sites containing defined sequence motifs and have distinct preferences for exonic versus intronic or coding versus untranslated transcript regions. The precise mapping of binding sites across the transcriptome will be critical to the interpretation of the rapidly emerging data on genetic variation between individuals and how these variations contribute to complex genetic diseases.
LinkOut: [PMID: 20371350]
CLIP-seq Support 1 for dataset GSM545216
Method / RBP PAR-CLIP / AGO2
Cell line / Condition HEK293 / miR-124 transfection
Location of target site ENST00000398505.3 | 3UTR | GUAUUCUUUCAAAUUUUUUUUAAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 20371350 / GSE21578
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
67 hsa-miR-3119 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130164 TXNIP thioredoxin interacting protein 2 4
MIRT364023 SDCBP syndecan binding protein 2 2
MIRT383920 BTG2 BTG anti-proliferation factor 2 2 2
MIRT397609 RACGAP1 Rac GTPase activating protein 1 2 2
MIRT404072 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT443202 ECHDC3 enoyl-CoA hydratase domain containing 3 2 2
MIRT446469 THUMPD3 THUMP domain containing 3 2 2
MIRT446489 PRELP proline and arginine rich end leucine rich repeat protein 2 2
MIRT446849 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT463282 ZFX zinc finger protein, X-linked 2 4
MIRT478441 DAZAP2 DAZ associated protein 2 2 2
MIRT480447 C16orf72 chromosome 16 open reading frame 72 2 2
MIRT480632 BTBD3 BTB domain containing 3 2 6
MIRT487460 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487497 IL1F10 interleukin 1 family member 10 2 4
MIRT491967 USP37 ubiquitin specific peptidase 37 2 2
MIRT495620 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C 2 2
MIRT496151 RPS15A ribosomal protein S15a 2 2
MIRT498042 SNX5 sorting nexin 5 2 6
MIRT500546 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503902 ZSCAN25 zinc finger and SCAN domain containing 25 2 2
MIRT513157 BIRC5 baculoviral IAP repeat containing 5 2 6
MIRT519070 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT519741 ZNF394 zinc finger protein 394 2 4
MIRT522733 LRP8 LDL receptor related protein 8 2 4
MIRT539402 ADIPOR2 adiponectin receptor 2 2 2
MIRT551660 KIAA1143 KIAA1143 2 4
MIRT559131 BTG3 BTG anti-proliferation factor 3 2 4
MIRT559307 ATXN1 ataxin 1 2 2
MIRT559515 ARHGEF26 Rho guanine nucleotide exchange factor 26 2 2
MIRT560771 RRP7A ribosomal RNA processing 7 homolog A 2 2
MIRT562210 HMGB2 high mobility group box 2 2 2
MIRT562734 ZNF468 zinc finger protein 468 2 2
MIRT563070 EMC8 ER membrane protein complex subunit 8 2 2
MIRT563731 ZNF107 zinc finger protein 107 2 4
MIRT576719 Wars tryptophanyl-tRNA synthetase 2 2
MIRT612872 IGFBP5 insulin like growth factor binding protein 5 2 4
MIRT613214 CCDC85C coiled-coil domain containing 85C 2 4
MIRT613591 THSD7A thrombospondin type 1 domain containing 7A 2 2
MIRT614332 NANOS1 nanos C2HC-type zinc finger 1 2 4
MIRT614929 MARCH3 membrane associated ring-CH-type finger 3 2 2
MIRT616257 KANK4 KN motif and ankyrin repeat domains 4 2 2
MIRT617087 FPR1 formyl peptide receptor 1 2 2
MIRT617167 SLC16A5 solute carrier family 16 member 5 2 2
MIRT620350 WDR75 WD repeat domain 75 2 2
MIRT621041 SOX30 SRY-box 30 2 2
MIRT625936 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT636872 BCORL1 BCL6 corepressor like 1 2 2
MIRT637019 CLASP1 cytoplasmic linker associated protein 1 2 2
MIRT637299 ACTN2 actinin alpha 2 2 2
MIRT639734 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT640811 ZMAT1 zinc finger matrin-type 1 2 2
MIRT642879 SAMD1 sterile alpha motif domain containing 1 2 2
MIRT648116 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT655769 NPTX1 neuronal pentraxin 1 2 2
MIRT655801 NOVA2 NOVA alternative splicing regulator 2 2 2
MIRT659142 DDR2 discoidin domain receptor tyrosine kinase 2 2 2
MIRT660327 BCL11B B-cell CLL/lymphoma 11B 2 2
MIRT662150 IPO11 importin 11 2 2
MIRT664741 METTL16 methyltransferase like 16 2 2
MIRT670134 HOXD12 homeobox D12 2 2
MIRT679027 ZNF419 zinc finger protein 419 2 2
MIRT695596 TMEM199 transmembrane protein 199 2 2
MIRT703345 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT704097 DST dystonin 2 2
MIRT711833 AMOTL2 angiomotin like 2 2 2
MIRT715820 ZNF598 zinc finger protein 598 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3119 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-3119 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-3119 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)

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