pre-miRNA Information
pre-miRNA hsa-mir-561   
Genomic Coordinates chr2: 188297492 - 188297588
Synonyms MIRN561, hsa-mir-561, MIR561
Description Homo sapiens miR-561 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-561-3p
Sequence 61| CAAAGUUUAAGAUCCUUGAAGU |82
Evidence Experimental
Experiments SAGE
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 2 + 188297554 26449202, 27587585, 29233923 MiREDiBase
A-to-I 4 2 + 188297555 26449202, 27587585, 29233923 MiREDiBase
A-to-I 9 2 + 188297560 26449202, 27587585, 29267965, 29165639 MiREDiBase
A-to-I 10 2 + 188297561 26449202, 27587585, 29233923 MiREDiBase
A-to-I 19 2 + 188297570 29233923 MiREDiBase
A-to-I 20 2 + 188297571 26449202, 27587585, 29233923 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN16051820 1 COSMIC
COSN30152233 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1050331859 4 dbSNP
rs1308584826 15 dbSNP
rs1022262507 18 dbSNP
rs1317728266 20 dbSNP
Putative Targets

Gene Information
Gene Symbol NR0B1   
Synonyms AHC, AHCH, AHX, DAX-1, DAX1, DSS, GTD, HHG, NROB1, SRXY2
Description nuclear receptor subfamily 0 group B member 1
Transcript NM_000475   
Expression
Putative miRNA Targets on NR0B1
3'UTR of NR0B1
(miRNA target sites are highlighted)
>NR0B1|NM_000475|3'UTR
   1 AGTCATGTGGGCCACACAAGTGCAGTAGTGCAGTTCACCATGAGGGAAGAATAAAGAGCTGTGGGCAAAAGAGTGTAAAA
  81 TATTTTAAAATAAACTTTCTTAATATTTTTACATGCAGAGTATTTTTGTATTCAATTAAAGAAATAATTTTATTCCAAAA
 161 AAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
444073 17 ClinVar
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs779673698 5 dbSNP
rs1165222593 6 dbSNP
rs773543388 9 dbSNP
rs1351831448 13 dbSNP
rs755657305 14 dbSNP
rs760506998 19 dbSNP
rs1330738945 20 dbSNP
rs1280369422 22 dbSNP
rs1231618839 24 dbSNP
rs775163498 28 dbSNP
rs367648839 34 dbSNP
rs745827190 39 dbSNP
rs181865731 40 dbSNP
rs1229238920 51 dbSNP
rs888475253 81 dbSNP
rs940899112 87 dbSNP
rs1050164139 88 dbSNP
rs1399007630 90 dbSNP
rs909468362 91 dbSNP
rs1257069442 98 dbSNP
rs1457784674 100 dbSNP
rs768113469 106 dbSNP
rs984459681 120 dbSNP
rs947734773 121 dbSNP
rs757562464 135 dbSNP
rs1440133860 162 dbSNP
rs777257083 163 dbSNP
rs992351248 168 dbSNP
rs751982802 173 dbSNP
rs1041148581 175 dbSNP
rs1030751103 180 dbSNP
rs1424621817 181 dbSNP
rs1467189354 197 dbSNP
rs772845875 206 dbSNP
rs1443563312 211 dbSNP
rs944558014 214 dbSNP
rs771698153 217 dbSNP
rs977910050 221 dbSNP
rs2301131 232 dbSNP
rs1022659394 233 dbSNP
rs77062635 242 dbSNP
rs1277120651 243 dbSNP
rs373100951 243 dbSNP
rs763096792 243 dbSNP
rs1444777377 247 dbSNP
rs1011577087 286 dbSNP
rs1318169263 288 dbSNP
rs1215810806 299 dbSNP
rs1275965855 327 dbSNP
rs1311512498 329 dbSNP
rs923736383 331 dbSNP
rs1259555504 336 dbSNP
rs1487152244 336 dbSNP
rs889150565 343 dbSNP
rs1476544032 348 dbSNP
rs1029004316 361 dbSNP
rs1206219718 370 dbSNP
rs1246816929 370 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions Hep G2
Disease 190.0
Location of target site 3'UTR
Tools used in this research MicroCosm , miRDB , TargetScan
Original Description (Extracted from the article) ... "Overexpression of miR-561 decreased DAX-1-39-UTR reporter activity by 54.1% in HepG2 cells (P ...

- Li M; Yang Y; He ZX; Zhou ZW; Yang T; Guo et al., 2014, Drug metabolism and disposition: the biological fate of chemicals.

Article - Li M; Yang Y; He ZX; Zhou ZW; Yang T; Guo et al.
- Drug metabolism and disposition: the biological fate of chemicals, 2014
One of the major mechanisms involved in acetaminophen (APAP)-induced hepatotoxicity is hepatocyte nuclear factor 4alpha (HNF4alpha)-mediated activation of pregnane X receptor (PXR) and constitutive androstane receptor (CAR). In the present study, we investigated the role of miR-561 and its target gene DAX-1 encoding a corepressor of HNF4alpha in the process of APAP-induced hepatotoxicity. We used both human hepatocellular liver carcinoma cell line (HepG2) cells and primary human hepatocytes in this study and monitored the levels of reactive oxygen species, lactate dehydrogenase, and glutathione. Our bioinformatics study suggests an association between miR-561 and DAX-1, but not HNF4alpha. Treatment of HepG2 cells with APAP significantly reduced the expression of DAX-1 in a concentration-dependent manner. miR-561 was induced by APAP treatment in HepG2 cells. Transfection of HepG2 cells with an miR-561 mimic exacerbated APAP-induced hepatotoxicity. HNF4alpha is physically associated with DAX-1 in HepG2 cells. A decreased protein level of DAX-1 by APAP treatment was also enhanced by miR-561 mimic transfection in HepG2 cells and primary human hepatocytes. The basal and APAP-induced expression of PXR and CAR was enhanced by miR-561 mimic transfection; however, transfection of HepG2 cells or primary human hepatocytes with a miR-561 inhibitor or DAX-1 small interfering RNA reversed these effects. Additionally, the chromatin immunoprecipitation assay revealed that recruitment of DAX-1 onto the PXR promoter was inversely correlated with the recruitment of peroxisome proliferator-activated receptor-alpha coactivator-1alpha and HNF4alpha on APAP treatment. These results indicate that miR-561 worsens APAP-induced hepatotoxicity via inhibition of DAX-1 and consequent transactivation of nuclear receptors.
LinkOut: [PMID: 24104199]
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla -0.7 3.9e-3 -0.687 4.7e-3 13 Click to see details
GSE42095 Differentiated embryonic stem cells -0.449 1.6e-2 -0.593 1.4e-3 23 Click to see details
GSE17306 Multiple myeloma 0.194 9.1e-2 0.525 5.4e-5 49 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.271 9.5e-2 0.355 4.1e-2 25 Click to see details
GSE38226 Liver fibrosis 0.176 2.2e-1 0.181 2.2e-1 21 Click to see details
GSE28544 Breast cancer -0.149 2.4e-1 -0.083 3.5e-1 24 Click to see details
GSE26953 Aortic valvular endothelial cells -0.137 2.6e-1 -0.128 2.8e-1 24 Click to see details
GSE17498 Multiple myeloma -0.089 2.9e-1 -0.060 3.6e-1 40 Click to see details
GSE27834 Pluripotent stem cells -0.119 3.3e-1 -0.109 3.4e-1 16 Click to see details
GSE14794 Lymphoblastoid cells 0.041 3.5e-1 -0.075 2.4e-1 90 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.084 3.6e-1 -0.003 4.9e-1 20 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.135 3.7e-1 0.524 9.1e-2 8 Click to see details
GSE32688 Pancreatic cancer -0.046 4.0e-1 0.209 1.3e-1 32 Click to see details
GSE21687 Ependynoma primary tumors -0.013 4.6e-1 0.029 4.1e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.013 4.6e-1 0.029 4.1e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.013 4.6e-1 0.029 4.1e-1 64 Click to see details
GSE21687 Ependynoma primary tumors -0.013 4.6e-1 0.029 4.1e-1 64 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
-0.013 4.6e-1 0.029 4.1e-1 64 Click to see details
133 hsa-miR-561-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT072097 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 4
MIRT080799 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT088833 MSH6 mutS homolog 6 2 2
MIRT093446 MSMO1 methylsterol monooxygenase 1 2 2
MIRT099908 SOX4 SRY-box 4 2 10
MIRT107568 VLDLR very low density lipoprotein receptor 2 2
MIRT130135 TXNIP thioredoxin interacting protein 2 2
MIRT136944 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT158447 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT161901 FXR1 FMR1 autosomal homolog 1 2 2
MIRT166271 C5ORF51 chromosome 5 open reading frame 51 2 4
MIRT187291 CLIC4 chloride intracellular channel 4 2 4
MIRT202308 CEBPB CCAAT/enhancer binding protein beta 2 2
MIRT210742 PPP4R2 protein phosphatase 4 regulatory subunit 2 2 2
MIRT249020 PABPC3 poly(A) binding protein cytoplasmic 3 2 2
MIRT268845 C1ORF21 chromosome 1 open reading frame 21 2 2
MIRT304688 GTF2E1 general transcription factor IIE subunit 1 2 2
MIRT316774 FOXC1 forkhead box C1 2 2
MIRT325708 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT327970 CHIC1 cysteine rich hydrophobic domain 1 2 6
MIRT328758 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT356391 RBPJ recombination signal binding protein for immunoglobulin kappa J region 2 2
MIRT437448 NR0B1 nuclear receptor subfamily 0 group B member 1 1 1
MIRT441383 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT442496 PCDH10 protocadherin 10 2 4
MIRT444054 PROX2 prospero homeobox 2 2 2
MIRT446062 RABIF RAB interacting factor 2 2
MIRT446714 FUT10 fucosyltransferase 10 2 2
MIRT456384 CRB1 crumbs 1, cell polarity complex component 2 2
MIRT457022 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT457056 NEGR1 neuronal growth regulator 1 2 2
MIRT457353 RAD51AP1 RAD51 associated protein 1 2 2
MIRT466850 STX6 syntaxin 6 2 2
MIRT471347 PELO pelota mRNA surveillance and ribosome rescue factor 2 2
MIRT474051 LONRF1 LON peptidase N-terminal domain and ring finger 1 2 2
MIRT479058 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 8
MIRT479398 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT492072 TMED7 transmembrane p24 trafficking protein 7 2 2
MIRT492810 PCBP1 poly(rC) binding protein 1 2 6
MIRT494861 ZNF99 zinc finger protein 99 2 2
MIRT496888 TMTC2 transmembrane and tetratricopeptide repeat containing 2 2 2
MIRT498041 TAOK1 TAO kinase 1 2 2
MIRT500856 SYPL1 synaptophysin like 1 2 8
MIRT501323 RNFT1 ring finger protein, transmembrane 1 2 2
MIRT502795 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT503684 SLC46A1 solute carrier family 46 member 1 2 2
MIRT506383 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT507320 FAM60A SIN3-HDAC complex associated factor 2 6
MIRT507671 CPEB4 cytoplasmic polyadenylation element binding protein 4 2 4
MIRT510809 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 2 8
MIRT512260 ARPP19 cAMP regulated phosphoprotein 19 2 6
MIRT514215 LRRC63 leucine rich repeat containing 63 2 2
MIRT517729 NT5DC1 5'-nucleotidase domain containing 1 2 4
MIRT520570 TMF1 TATA element modulatory factor 1 2 2
MIRT523456 GPBP1L1 GC-rich promoter binding protein 1 like 1 2 6
MIRT524538 CDCA4 cell division cycle associated 4 2 2
MIRT525478 SPIC Spi-C transcription factor 2 2
MIRT532321 GHSR growth hormone secretagogue receptor 2 2
MIRT534716 RFX7 regulatory factor X7 2 2
MIRT535042 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 2 2
MIRT535111 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT536665 INIP INTS3 and NABP interacting protein 2 2
MIRT537636 ERGIC2 ERGIC and golgi 2 2 2
MIRT537701 ELOVL6 ELOVL fatty acid elongase 6 2 2
MIRT538060 DMD dystrophin 2 4
MIRT538811 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT539270 ANKRD28 ankyrin repeat domain 28 2 2
MIRT541158 PABPC1 poly(A) binding protein cytoplasmic 1 2 2
MIRT543500 MDM2 MDM2 proto-oncogene 2 4
MIRT545101 TRIM66 tripartite motif containing 66 2 2
MIRT545328 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 2 2
MIRT545838 ZNF275 zinc finger protein 275 2 2
MIRT546109 USP48 ubiquitin specific peptidase 48 2 4
MIRT548100 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT549216 BCLAF1 BCL2 associated transcription factor 1 2 4
MIRT549705 RBM23 RNA binding motif protein 23 2 4
MIRT550139 ZNF138 zinc finger protein 138 2 2
MIRT551104 TTC8 tetratricopeptide repeat domain 8 2 2
MIRT551212 MRPL35 mitochondrial ribosomal protein L35 2 2
MIRT551389 ZNF543 zinc finger protein 543 2 4
MIRT553330 TSC22D2 TSC22 domain family member 2 2 2
MIRT553885 SUPT7L SPT7 like, STAGA complex gamma subunit 2 4
MIRT554651 ROBO1 roundabout guidance receptor 1 2 2
MIRT554879 RCAN2 regulator of calcineurin 2 2 2
MIRT555602 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT556467 LMNB2 lamin B2 2 4
MIRT557838 FNBP1L formin binding protein 1 like 2 2
MIRT558143 ENC1 ectodermal-neural cortex 1 2 2
MIRT558754 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT560530 TMEM98 transmembrane protein 98 2 2
MIRT561068 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT561384 TWF1 twinfilin actin binding protein 1 2 2
MIRT561460 TEAD1 TEA domain transcription factor 1 2 2
MIRT561818 NUP155 nucleoporin 155 2 2
MIRT561963 LSM12 LSM12 homolog 2 2
MIRT562183 HNRNPF heterogeneous nuclear ribonucleoprotein F 2 2
MIRT564363 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 2 2
MIRT564470 SLC35E2 solute carrier family 35 member E2 2 2
MIRT564755 ZNF146 zinc finger protein 146 2 2
MIRT565532 SON SON DNA binding protein 2 2
MIRT565744 SESN3 sestrin 3 2 2
MIRT566236 PTCH1 patched 1 2 2
MIRT568636 ACVR2A activin A receptor type 2A 2 2
MIRT571081 TCHHL1 trichohyalin like 1 2 2
MIRT571559 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT572246 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT572908 RUNDC3B RUN domain containing 3B 2 2
MIRT573201 TTC19 tetratricopeptide repeat domain 19 2 2
MIRT573981 DDX21 DExD-box helicase 21 2 2
MIRT614493 LIX1 limb and CNS expressed 1 2 2
MIRT614579 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT614898 PAPOLG poly(A) polymerase gamma 2 2
MIRT615469 BNC2 basonuclin 2 2 2
MIRT617968 ZNF713 zinc finger protein 713 2 2
MIRT620418 TFDP3 transcription factor Dp family member 3 2 2
MIRT623571 ISL1 ISL LIM homeobox 1 2 2
MIRT624902 USP6NL USP6 N-terminal like 2 2
MIRT625346 TAPBP TAP binding protein 2 2
MIRT628309 CNN3 calponin 3 2 2
MIRT630979 ARL4C ADP ribosylation factor like GTPase 4C 2 2
MIRT637274 KLHL12 kelch like family member 12 2 2
MIRT643959 GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 2 2
MIRT649795 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT653573 SLC35B3 solute carrier family 35 member B3 2 2
MIRT653997 SCYL3 SCY1 like pseudokinase 3 2 2
MIRT654011 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT658530 ERP44 endoplasmic reticulum protein 44 2 2
MIRT683755 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT690907 TOP2A DNA topoisomerase II alpha 2 2
MIRT697689 WASL Wiskott-Aldrich syndrome like 2 2
MIRT698820 STK38 serine/threonine kinase 38 2 2
MIRT701625 MYO1B myosin IB 2 2
MIRT712319 PER2 period circadian clock 2 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-561 Glucose NULL 5793 Microarray endothelial cells 24394957 2014 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-561-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-561-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-561-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (WM266) (200nM)
hsa-miR-561-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-561-3p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-561-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-561-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-561-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-561-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-561-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-561-3p Pegylated interferon alpha+Ribavirin resistant tissue (chronic hepatitis C)
hsa-miR-561-3p Cisplatin 5460033 NSC119875 approved resistant cell line (IGROV-1)
hsa-miR-561-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-561-3p Cisplatin 5460033 NSC119875 approved resistant cell line (H460)
hsa-miR-561-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine resistant cell line (Bats-72)
hsa-miR-561-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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