miRTarBase - #MIRT441394


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pre-miRNA Information
pre-miRNA hsa-mir-1231   
Genomic Coordinates chr1: 201808611 - 201808702
Synonyms MIRN1231, hsa-mir-1231, MIR1231
Description Homo sapiens miR-1231 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1231
Sequence 5| GUGUCUGGGCGGACAGCUGC |24
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN25212119 11 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs768024461 3 dbSNP
rs116338160 9 dbSNP
rs112032363 10 dbSNP
rs544709517 11 dbSNP
Putative Targets

Gene Information
Gene Symbol SOX5   
Synonyms L-SOX5, L-SOX5B, L-SOX5F, LAMSHF
Description SRY-box 5
Transcript NM_006940   
Other Transcripts NM_152989 , NM_178010   
Expression
Putative miRNA Targets on SOX5
3'UTR of SOX5
(miRNA target sites are highlighted)		 
>SOX5|NM_006940|3'UTR
   1 TAAGGGTCAAAAGATTGTTGTGACCTTAGGACTTAAAGAAGCCCTAACTGGTTCATCCTTACCAGTGGCCAAGCACATTA
  81 ACTTTCTCATACACTGACTGTTACTTTAACTGTTAGTCTTAAATAGTTGGGACATCAGCTGACTAATAGACCTCAGCCTC
 161 AAAAGGCTTGGAAAGAAAAAACAAATACAACAAGCAAACAACAATATCAACAACAAGAGATTGAAATAAGCTATGGGTAA
 241 AATAATGCCAGTAATTCAGCTGCTACATCCAAGCACTGAAGTCTTACCCGTCAACTTTTTTTTTTTTTTAAATAAACTTT
 321 ATGGCTGTTTGTTCTACAATGTTCTAGAAATTCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGAATGTGTTTTGT
 401 TGTTTTGTGCTACAATTTTTAAAAAGAAAAAAGTTTTGTTTTGTTTTTTGGGGTTTCTGGGTTTTTTCCTTTTCTTTTTC
 481 TTTCCTTTCATTTTTTTTCTTTGTAATGCACCTGACAGAAAAAAAAGAAAAATGAATTTCTCTTTACTTCTCTCCACCTT
 561 CTCCATCTCTCTACTTTAAAGATGGAAGTCTGTGCATGAGGGGAAAGAGGGAAAAAGAGCCTGTTTTTAACTTCCTTGCT
 641 ATCCACCACAAAATAAGCAATTATTTTCTTTAGAGGACTTTATCTATTGCACACCACACTACATCTTTGAGCAAGTGCCA
 721 AATTTGTACTGAAGTGTTGACCAAGTTCATTTTTTCTCTTTACTTTTTCCTTTTCCTTCTTAAGTTAGGACAGTGTTAAA
 801 TCTTAGACAATCCCTTGAAAAACCTGAAATACCAGCAGCTGGTGAGATTTGACTTTTTTTTTTAATGGAAACTGTAGGTG
 881 CTGTTCTCAGGTGAAAAGAGAGAGAGAGAGAGAGACATAAGAAATTTAGAGAAAAATATTTTCTGATCTTGGATTTTTGT
 961 GTGTATGTATGTATGTGATTATGGTACTAATAATAGGAATAACGTTGGACCATTGTGAGTTAAACCCACATCTGGGGATG
1041 AAATCCCACATCCTCCCAAGTGACTGGTCTAGAAATAATCTTGACCTTGACTTTGCACTTCAAATGACAACTTAACCAAG
1121 TATAGGGCTCAGAAATTATATTTTTAAATGTCTGATTATTATTGGATGGATCAGGTGGCCCTGTGTAATAGAGGTGTGCA
1201 TGTATAACATGGAAGCTACTAGCAAACTGCTCCCAGATGTCCTTTCTCCCTGGTCAGTTGGTTCCATTAACGTTTGCTAC
1281 TTAGTGATTTTTGTTTTTCCTGTTGATATTTTGAGCAAAACAATCATTGTTTTCATTGAATATATTTGGCCATTTTTTCA
1361 GACAAATAGAATTAGCTTATTTCTTCAACATTCCATCCTTTCCCGATCAGGAAATGAAACTGATGATTTTATAAGGTATT
1441 TTTCACCCCTCCATGAAGTGAGGTGGAGGCCTTTAGCATTTCAGAAGTGTGGGCCATATGTAGTTCATGCCATAAAAAGT
1521 AGGATTTAATTAAAAGTCATTGCAGCCCAATAAAATGGAGCCTGGCTGCACCCAGGGATCCTTGCCACTGCTCTTCCCTT
1601 GCTGTCAGATTAATCCACTGAAGTCCAACTTTGGTTCAAGCAGAGTATTTGCAAAGAGCAACAACTGAATGTGATGGGAC
1681 TGCTTATGTAGATTTTGCCAGCCAAATGCCAAGGCAGTTGTAGGGCCTGTACAAATAAATGCAAAATCATTTCAAGTCAA
1761 TTGCCATTATTTGTATTGAAGTATCAGATAGATAGTAAATACTGCAACTAGTAGCTTGATGTGCTATAGTTTTCACTCCA
1841 GTCATCATTTTCCTATCTCACCCCCCGAAACACCACCCTAAAGTTGGATTTTTACATATAAATAAAAAAAGAATCCCTTT
1921 TATTTTTCTCTCTCTCAGAAGACTTGCTCTGGGGTTTTGCTTGGAGGAGCTGATCATATCCTGCATGTCAGAGATTTCAT
2001 TTTGTTTGTTTTTCTGTTTGTTTGTTTTTGATGACTTTATTTACATTTGAACTGCCTCTTTTTGCTAGTGTTGTAATGAT
2081 GATGATGATAAAATAATAATAATAATAGTAATAATAATAATAATGGTCAGCTGTTCCCAGATTAGTAAGTTATGTATAAT
2161 TTATTTTATTTCTCCCTTTCTATTTTATTCTGCTCTGATTTGGAAGTGCAGCCAATAAGCTGTTAGATATTTAAAACAAA
2241 TTTCCATCTCCAACTCATATATGTATGTATATGTATATATATATATACATATATATACACACATATACACACACACACAC
2321 ACATTTACCCACAATTTTACTTCTCTTTCCGTAAGTTTTCTCTTTTTTAAGAATTTTGGCCCCAACAATATCAGTTCTGA
2401 TGTTTAAAACAAAGGAGTGAATTAATAGGAGGGTCGTGTTCAATCTTAATTAACTTATGCTCTCATCACTCATTTTAGTT
2481 ATTTAATTGCCACAGTCATCTAGAGCCAATTTTTTTTTGTTTTTGTTTGTTTTGTTTTTAAGCACTCTGGATAAGGAAAA
2561 AATAGACACTTGTTTTTATATCATTTTTATGTACAATGTGAAAACAGATTTTTAAAAAATTTGTTCTCTGTCTTTGTTAA
2641 CAAATTCCTTCCGATTTATGTGGGTTCACCTCTCACGTTTGCTGGATACTTACTTTACACCATGTTATGAAAGATGCTTT
2721 GTTTTCATTTCATGAGTTTGGGCTACAAGAATACTTTGTTTTAGCTCCAGGTAGATGCCATTGAAGGCATTCATGGCTGA
2801 AATCAATTCTAACACACTTACCGATGAATTGACAACACTTTGGTGTTTGGTCTTTTTTTTGTTATATTTTGTTTTATTTG
2881 AAGGGGAAAACAAAATTGTTAATGGTGACTTTTAACTGCTGAAATTCAAAATTTGATTTTAGTTAGGTTTATGTCCGAGA
2961 CTAAACTGTGCATGAACCGAAACAAAAAGCAAGTTCATACCGCTGCATTCTGTTCTCTTGTTCTGACGGTTAATTCACTG
3041 GACATCAAATTTTCTTTGCCCTAGTTTTCCCCAAAAGAAAACAAAAGCAAAAATAGTTATATTAATGTTGAAAGTGCTTT
3121 GAAGTCACTTGATAAAAGGTGCTATGAATAGCAACTTACTGTGTTACTACATTGCCTTTTTGGCATTGGTTGATTTATAA
3201 TTTTGGTAAAGGATCCTAAAACCCTGTATTCTTTTTCTGTGCCCCATAATGACCAAAAAAGATAAAGAAAATGAGAGTAA
3281 GATCAAAAGATCAAACTAAAACATAAACAGTCTCCTTCCTGTCTGCTTTCTTACCTATCTGTTCACACTTTATCTCTTTC
3361 CCTTTCTCTCTCTCTCTCACATGCGCGCGCGCGCGCGCGCACACACACACACACACACACTTGCCCCAACACTGAGAAAT
3441 AATCTTGCCAGAATTCTGGTTTTTATAGTTGTTGTAGTCCGTTTCTCTAAAAATAGTCCTGTTTTCATATGAATCTAAGA
3521 GAACATTACCGGAGAAAATAAAGTTACTCATTTATAGTTACTAATAATAAGTTAGTGATTAACTTACCACAATTGGATAA
3601 AATATAAAACTATTCTTCAGCACATTTATACCTAAATTAGTGAAGTCCATTTGTGAAGTTCATTTGGCATCTGCAGTTAA
3681 GAGTTAACCATGTATAAAATCCCTCCCAAAGAACATAATCATCGTTAGAACCAAATCCTCTTATAAAGAACAAATATAAA
3761 AAAGTTTTCTGTGGTGAAGCTATTTTATAGATTTGATTTCCGGAGTAGAATTTTACCTTAATTCACTTAAAGAAAATTAA
3841 CCATTTTTTGGTCCAACTTCAGATATTTTCTTAATCCAGAAGCTGTGACTGTTCCCAGAAGAAACCTCTTATATCACATT
3921 TAAAACATAAAAAATAATTACACTTTCACTCATTCTAATGGGTAAATTGTTGAATTGTAATAAACAACTGTATATTTACA
4001 AACAGGTTTATAAGGTATTTGTCTATCAAATTAATAATAAAATAAAACTTACGGGGTCTGCAAGGAAAACTATGAAGGCC
4081 ACTTAAAGTGGTTCAGGTATCCCTTTGTCTTGTAGGGCATAGCTGTTGGTTTAGCCAGGCTTTTACAGTATTTAATTTTA
4161 AAGTATCCTATAACTATCAACTTCCCAGGTTGAAGACGATGTGTTGAGTTTCCTACTGATTGATTGATTCCTGTCCTCCC
4241 CAGTGTTTCCGTCACTGGTTCACTAAAACAGTATTTATATAGCTCCACTGGCTCTAAAGCTCTTAGTCCTTCTAATATTT
4321 TGGATTTTACAAGTAAAAATGGAAAAAAAATAGAAAAGAGACAATCAAATGCCTGGAGCTTAAAACAAAGTATGTGCAAC
4401 CTACCATCTCACTTGAAATTTAATAAAATAATAAGTAATTATGTAAATATAACATAGAGTTATAGATTTATATTTTGTTC
4481 ATAACACATAGTGTAATATAAGTTGTATATTTTCATGTTTTTGGTTTTATGTTATCATTCATGCCACAATAAAAATAAAA
4561 CAGGAGTTTATGTGCTCTTAAAAAAAAGATGTGGGTTGCCACCAACCTGTTTTTCGTTTTTGTTTTTTGTTTATTTTATT
4641 TTATTTTTTTGCATTCTCCTTTTTCAGTATTACTGCCATGCAAGGCACCAATAAAAACAGCAAATGTGTTCTTTAAAAAA
4721 AAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cgUCGACAGGCGGGUCUGUg 5'
            :||  |:: ::|||||| 
Target 5' ttGGCCATTTTTTCAGACAa 3'
 1346 - 1365 134.00 -11.50
2 
miRNA  3' cgUCGACAGGCGGGUCUGug 5'
            ||||||:  ||||||:  
Target 5' tcAGCTGTT--CCCAGATta 3'
 2127 - 2144 130.00 -21.30
3 
miRNA  3' cgUCGACA--GGC--GGGUCUgug 5'
            ||||||  |:|  ||||||   
Target 5' gaAGCTGTGACTGTTCCCAGAaga 3'
 3879 - 3902 126.00 -17.82
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN16348648 3 COSMIC
COSN31496511 8 COSMIC
COSN26996388 12 COSMIC
COSN510877 12 COSMIC
COSN30502484 37 COSMIC
COSN30474359 43 COSMIC
COSN30505843 44 COSMIC
COSN30519210 69 COSMIC
COSN30103244 73 COSMIC
COSN24398588 84 COSMIC
COSN1567552 105 COSMIC
COSN31513780 157 COSMIC
COSN31525299 181 COSMIC
COSN31566397 206 COSMIC
COSN26668067 250 COSMIC
COSN31607627 269 COSMIC
COSN20923266 295 COSMIC
COSN26551709 325 COSMIC
COSN26103513 432 COSMIC
COSN17076369 457 COSMIC
COSN30305071 518 COSMIC
COSN21727930 555 COSMIC
COSN31609318 668 COSMIC
COSN22220200 703 COSMIC
COSN25218912 712 COSMIC
COSN26557067 718 COSMIC
COSN24304383 725 COSMIC
COSN30159254 759 COSMIC
COSN26538287 824 COSMIC
COSN30658081 847 COSMIC
COSN31513563 853 COSMIC
COSN27521074 854 COSMIC
COSN28837818 854 COSMIC
COSN28867830 897 COSMIC
COSN30173792 902 COSMIC
COSN5833158 920 COSMIC
COSN30544398 1008 COSMIC
COSN30685973 1029 COSMIC
COSN24399365 1041 COSMIC
COSN31538226 1053 COSMIC
COSN5865324 1083 COSMIC
COSN26596576 1089 COSMIC
COSN31531662 1125 COSMIC
COSN30569732 1128 COSMIC
COSN7613141 1131 COSMIC
COSN30602833 1154 COSMIC
COSN27323980 1408 COSMIC
COSN32069340 1494 COSMIC
COSN23670092 1535 COSMIC
COSN20109341 1785 COSMIC
COSN9746873 1918 COSMIC
COSN7323214 2410 COSMIC
COSN22904538 2510 COSMIC
COSN19078957 2780 COSMIC
COSN19426506 2852 COSMIC
COSN28396200 2935 COSMIC
COSN14513587 2978 COSMIC
COSN5938963 3025 COSMIC
COSN5320081 3101 COSMIC
COSN7323213 3231 COSMIC
COSN21777230 3284 COSMIC
COSN27333649 3295 COSMIC
COSN7323212 3339 COSMIC
COSN22191405 3368 COSMIC
COSN7323211 3403 COSMIC
COSN221147 3622 COSMIC
COSN30373900 3690 COSMIC
COSN27354363 3723 COSMIC
COSN29046792 3723 COSMIC
COSN24495925 3858 COSMIC
COSN22412152 3977 COSMIC
COSN7323210 4312 COSMIC
COSN24642639 4336 COSMIC
COSN29601848 4343 COSMIC
COSN15088679 4357 COSMIC
COSN5320080 4411 COSMIC
COSN27153279 4419 COSMIC
COSN17564644 4466 COSMIC
COSN19372998 4545 COSMIC
COSN21247920 4587 COSMIC
COSN14990440 4619 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs755447149 8 dbSNP
rs776181554 14 dbSNP
rs753914842 17 dbSNP
rs780271083 24 dbSNP
rs756330009 26 dbSNP
rs1251177082 27 dbSNP
rs763613057 35 dbSNP
rs750642702 36 dbSNP
rs1201872387 38 dbSNP
rs1305590755 41 dbSNP
rs760121498 41 dbSNP
rs1314604811 44 dbSNP
rs1241939112 46 dbSNP
rs1054672949 48 dbSNP
rs774858415 49 dbSNP
rs1434381516 56 dbSNP
rs1222165640 61 dbSNP
rs1290251227 62 dbSNP
rs1384181833 88 dbSNP
rs1191855006 89 dbSNP
rs1489722732 89 dbSNP
rs759600869 92 dbSNP
rs910658711 93 dbSNP
rs1180802013 96 dbSNP
rs1381120383 101 dbSNP
rs1467427723 101 dbSNP
rs1423790016 104 dbSNP
rs985975551 114 dbSNP
rs1351552098 115 dbSNP
rs1458403766 121 dbSNP
rs903217106 128 dbSNP
rs138736107 152 dbSNP
rs1045750283 166 dbSNP
rs1309576821 167 dbSNP
rs1381529464 171 dbSNP
rs1245723098 174 dbSNP
rs950064294 177 dbSNP
rs1175028847 178 dbSNP
rs1452218586 182 dbSNP
rs1249427155 196 dbSNP
rs1188650787 200 dbSNP
rs1251223905 202 dbSNP
rs1456535547 204 dbSNP
rs894567731 205 dbSNP
rs1239031140 208 dbSNP
rs1444166040 214 dbSNP
rs771615415 217 dbSNP
rs1415763076 220 dbSNP
rs1056245892 221 dbSNP
rs1169700673 222 dbSNP
rs1032850406 223 dbSNP
rs1260339573 226 dbSNP
rs776888281 235 dbSNP
rs553160637 243 dbSNP
rs1352650242 261 dbSNP
rs937868882 263 dbSNP
rs1331366444 282 dbSNP
rs1481653866 284 dbSNP
rs1202672588 290 dbSNP
rs61923823 293 dbSNP
rs76614643 295 dbSNP
rs76184106 296 dbSNP
rs1304210860 299 dbSNP
rs1381860701 300 dbSNP
rs536730777 305 dbSNP
rs966985006 309 dbSNP
rs1220546856 310 dbSNP
rs1295540135 310 dbSNP
rs1320728095 310 dbSNP
rs201455508 310 dbSNP
rs1255797768 311 dbSNP
rs1460914473 318 dbSNP
rs1208338532 324 dbSNP
rs1232505246 327 dbSNP
rs919751568 329 dbSNP
rs1344589533 334 dbSNP
rs1298535852 336 dbSNP
rs1023941710 339 dbSNP
rs1421408719 340 dbSNP
rs1478726219 344 dbSNP
rs1203864617 348 dbSNP
rs1428060320 353 dbSNP
rs1324759315 355 dbSNP
rs1014359837 372 dbSNP
rs577358893 375 dbSNP
rs1449229122 380 dbSNP
rs574213923 391 dbSNP
rs1288586302 399 dbSNP
rs1338895796 409 dbSNP
rs1402461657 426 dbSNP
rs1397735662 429 dbSNP
rs1322965544 431 dbSNP
rs1402774368 432 dbSNP
rs1214814025 433 dbSNP
rs1281021013 433 dbSNP
rs1312935343 433 dbSNP
rs1312053527 436 dbSNP
rs1489143436 445 dbSNP
rs1194364925 448 dbSNP
rs939899133 449 dbSNP
rs1476774718 450 dbSNP
rs1034547346 460 dbSNP
rs1391689565 462 dbSNP
rs1359082050 468 dbSNP
rs557870366 468 dbSNP
rs371919159 481 dbSNP
rs986494111 484 dbSNP
rs1002373443 485 dbSNP
rs887954843 488 dbSNP
rs774405020 489 dbSNP
rs534401251 490 dbSNP
rs1434422263 493 dbSNP
rs1223491269 499 dbSNP
rs1368392927 499 dbSNP
rs1370822612 499 dbSNP
rs1284126127 502 dbSNP
rs1028075130 504 dbSNP
rs1449727103 506 dbSNP
rs747184867 507 dbSNP
rs1246839797 511 dbSNP
rs1469158454 513 dbSNP
rs190885876 516 dbSNP
rs1381735146 526 dbSNP
rs1033127365 527 dbSNP
rs572748536 527 dbSNP
rs998956346 533 dbSNP
rs929563019 542 dbSNP
rs371064999 546 dbSNP
rs1404165919 550 dbSNP
rs903459124 554 dbSNP
rs1024944542 555 dbSNP
rs537482657 557 dbSNP
rs1275704125 563 dbSNP
rs1307392003 567 dbSNP
rs778011895 573 dbSNP
rs1240620872 576 dbSNP
rs1314193444 577 dbSNP
rs1353973150 579 dbSNP
rs1211612536 583 dbSNP
rs568492765 583 dbSNP
rs898103876 589 dbSNP
rs565695136 596 dbSNP
rs186785434 603 dbSNP
rs772412876 608 dbSNP
rs1182593664 612 dbSNP
rs1245526314 612 dbSNP
rs944740718 623 dbSNP
rs1368314700 634 dbSNP
rs1055920251 638 dbSNP
rs1341005265 640 dbSNP
rs1415112435 642 dbSNP
rs1292579731 649 dbSNP
rs930703245 655 dbSNP
rs779846890 657 dbSNP
rs910636545 669 dbSNP
rs1447867474 676 dbSNP
rs1333725815 678 dbSNP
rs1038226218 681 dbSNP
rs1284731310 682 dbSNP
rs750029215 682 dbSNP
rs1372141593 684 dbSNP
rs1216258010 686 dbSNP
rs1259507960 691 dbSNP
rs1308313951 692 dbSNP
rs1202694992 695 dbSNP
rs1253607175 702 dbSNP
rs1441083534 703 dbSNP
rs1189997263 704 dbSNP
rs1409035700 707 dbSNP
rs1369566995 721 dbSNP
rs986624330 724 dbSNP
rs768668835 727 dbSNP
rs1169146686 735 dbSNP
rs1425929916 739 dbSNP
rs939804787 749 dbSNP
rs935813973 754 dbSNP
rs756739948 756 dbSNP
rs925800874 758 dbSNP
rs1472808187 766 dbSNP
rs1417847463 770 dbSNP
rs933709981 775 dbSNP
rs977283692 775 dbSNP
rs920920709 776 dbSNP
rs1398136857 779 dbSNP
rs1473800375 779 dbSNP
rs1318049888 782 dbSNP
rs552053278 783 dbSNP
rs975160536 784 dbSNP
rs1436295765 786 dbSNP
rs1292220963 788 dbSNP
rs759492749 792 dbSNP
rs1210567575 797 dbSNP
rs957137822 799 dbSNP
rs1488153779 805 dbSNP
rs1024205381 806 dbSNP
rs1265920148 813 dbSNP
rs1032695303 822 dbSNP
rs1198178772 830 dbSNP
rs554909075 832 dbSNP
rs779459107 837 dbSNP
rs967911705 841 dbSNP
rs1359720404 849 dbSNP
rs1299998037 854 dbSNP
rs535370754 854 dbSNP
rs1341002624 855 dbSNP
rs181607943 859 dbSNP
rs1005727792 863 dbSNP
rs1284826215 864 dbSNP
rs1332317538 864 dbSNP
rs1353472996 864 dbSNP
rs1441129802 869 dbSNP
rs1214835702 871 dbSNP
rs1288799928 876 dbSNP
rs1488865130 878 dbSNP
rs1191116215 879 dbSNP
rs1034747187 896 dbSNP
rs1491283394 897 dbSNP
rs1238074763 898 dbSNP
rs1491555255 898 dbSNP
rs1335306912 899 dbSNP
rs1379876583 900 dbSNP
rs1437622557 900 dbSNP
rs767902277 900 dbSNP
rs1160178400 902 dbSNP
rs1330138720 905 dbSNP
rs1393684073 906 dbSNP
rs1388994600 909 dbSNP
rs887922180 910 dbSNP
rs549199651 911 dbSNP
rs1392305230 912 dbSNP
rs148266789 916 dbSNP
rs372687588 916 dbSNP
rs569569613 916 dbSNP
rs749848097 916 dbSNP
rs772978959 916 dbSNP
rs899259500 916 dbSNP
rs1386716475 917 dbSNP
rs529716532 917 dbSNP
rs1156247668 918 dbSNP
rs748327868 924 dbSNP
rs1438529943 932 dbSNP
rs1178353378 933 dbSNP
rs1363946348 934 dbSNP
rs1436438892 935 dbSNP
rs993697391 936 dbSNP
rs1456562529 937 dbSNP
rs933887206 939 dbSNP
rs1252882224 941 dbSNP
rs1431418500 945 dbSNP
rs1196629557 952 dbSNP
rs920962126 957 dbSNP
rs1039358858 961 dbSNP
rs1266349562 962 dbSNP
rs572340640 965 dbSNP
rs1490558011 975 dbSNP
rs781292333 977 dbSNP
rs1294201741 981 dbSNP
rs567066045 983 dbSNP
rs1350004587 984 dbSNP
rs925707999 987 dbSNP
rs1241738754 994 dbSNP
rs1457978591 994 dbSNP
rs762786201 995 dbSNP
rs977138382 996 dbSNP
rs967608453 998 dbSNP
rs775471830 1000 dbSNP
rs1367918787 1001 dbSNP
rs781391946 1003 dbSNP
rs898074406 1004 dbSNP
rs1385027075 1007 dbSNP
rs1228067892 1008 dbSNP
rs1311237090 1011 dbSNP
rs1159818966 1013 dbSNP
rs550149752 1014 dbSNP
rs1428534177 1015 dbSNP
rs1200130790 1018 dbSNP
rs1481291855 1021 dbSNP
rs1260812798 1025 dbSNP
rs1191748140 1033 dbSNP
rs776214692 1036 dbSNP
rs1456492284 1037 dbSNP
rs1284993900 1040 dbSNP
rs1337332976 1041 dbSNP
rs1206975973 1044 dbSNP
rs1233624803 1048 dbSNP
rs530534708 1056 dbSNP
rs1263053466 1060 dbSNP
rs994846163 1065 dbSNP
rs1224735381 1067 dbSNP
rs1385846839 1069 dbSNP
rs1347745911 1071 dbSNP
rs1258187653 1072 dbSNP
rs1276757612 1075 dbSNP
rs569142602 1079 dbSNP
rs1363403118 1083 dbSNP
rs1326690651 1084 dbSNP
rs1319644058 1091 dbSNP
rs1393777931 1093 dbSNP
rs549663030 1103 dbSNP
rs770517716 1107 dbSNP
rs1466704502 1110 dbSNP
rs1470943505 1112 dbSNP
rs763234223 1117 dbSNP
rs1358167516 1118 dbSNP
rs1167137506 1120 dbSNP
rs551218845 1122 dbSNP
rs1242924014 1123 dbSNP
rs889122570 1125 dbSNP
rs1195678734 1126 dbSNP
rs1365893168 1135 dbSNP
rs1278103200 1137 dbSNP
rs748482541 1137 dbSNP
rs1242655606 1139 dbSNP
rs1183040290 1150 dbSNP
rs757417742 1155 dbSNP
rs1051352546 1158 dbSNP
rs1441139579 1158 dbSNP
rs1326311778 1162 dbSNP
rs1257603643 1164 dbSNP
rs998001349 1164 dbSNP
rs1050503375 1168 dbSNP
rs936103946 1171 dbSNP
rs565007106 1174 dbSNP
rs925615706 1180 dbSNP
rs1186534689 1181 dbSNP
rs751573280 1182 dbSNP
rs926061009 1184 dbSNP
rs545305511 1191 dbSNP
rs1173470080 1194 dbSNP
rs1177779433 1195 dbSNP
rs1454024498 1200 dbSNP
rs115434154 1204 dbSNP
rs764705438 1205 dbSNP
rs1190614921 1210 dbSNP
rs542890533 1211 dbSNP
rs945917650 1216 dbSNP
rs191354348 1226 dbSNP
rs557501838 1241 dbSNP
rs945770281 1242 dbSNP
rs916984448 1243 dbSNP
rs144925992 1248 dbSNP
rs1445117604 1249 dbSNP
rs958371568 1252 dbSNP
rs1280507775 1258 dbSNP
rs993415747 1259 dbSNP
rs1283816733 1261 dbSNP
rs1489193044 1264 dbSNP
rs759865362 1272 dbSNP
rs926970877 1272 dbSNP
rs1300789669 1282 dbSNP
rs983827857 1286 dbSNP
rs1192611809 1287 dbSNP
rs958865871 1290 dbSNP
rs1454991049 1293 dbSNP
rs1158345250 1295 dbSNP
rs927530644 1298 dbSNP
rs1422124206 1310 dbSNP
rs75979655 1312 dbSNP
rs1365245865 1313 dbSNP
rs1288843890 1322 dbSNP
rs963407176 1327 dbSNP
rs1276853248 1333 dbSNP
rs558132398 1337 dbSNP
rs1306897477 1343 dbSNP
rs993666270 1346 dbSNP
rs1361368840 1349 dbSNP
rs1355570325 1357 dbSNP
rs1004990745 1365 dbSNP
rs1014920462 1365 dbSNP
rs1335283862 1369 dbSNP
rs1223048532 1375 dbSNP
rs1253241400 1379 dbSNP
rs755857115 1391 dbSNP
rs962208295 1395 dbSNP
rs867507514 1397 dbSNP
rs1176381023 1399 dbSNP
rs954976953 1404 dbSNP
rs750038161 1405 dbSNP
rs1413645164 1410 dbSNP
rs1009574206 1413 dbSNP
rs1393569867 1415 dbSNP
rs1170713040 1416 dbSNP
rs767224059 1417 dbSNP
rs1327933704 1425 dbSNP
rs1450213971 1428 dbSNP
rs1418867871 1430 dbSNP
rs1329538297 1435 dbSNP
rs1378893317 1441 dbSNP
rs1184808560 1444 dbSNP
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rs1050837685 1454 dbSNP
rs1442617953 1457 dbSNP
rs761666113 1463 dbSNP
rs535310936 1484 dbSNP
rs1000180402 1491 dbSNP
rs998430842 1492 dbSNP
rs899674337 1495 dbSNP
rs904607202 1496 dbSNP
rs74615658 1497 dbSNP
rs1211403266 1501 dbSNP
rs1485219701 1512 dbSNP
rs945843926 1519 dbSNP
rs1196413873 1541 dbSNP
rs1239576165 1554 dbSNP
rs917083654 1558 dbSNP
rs1182911441 1563 dbSNP
rs1206823413 1568 dbSNP
rs1307665769 1574 dbSNP
rs1057024685 1577 dbSNP
rs1294266080 1578 dbSNP
rs555535148 1578 dbSNP
rs1212230542 1582 dbSNP
rs140829436 1593 dbSNP
rs1465145193 1594 dbSNP
rs927262707 1600 dbSNP
rs566980085 1606 dbSNP
rs952397868 1608 dbSNP
rs1285291900 1609 dbSNP
rs1391761135 1617 dbSNP
rs1333339763 1622 dbSNP
rs1338469102 1624 dbSNP
rs1450184269 1624 dbSNP
rs918303612 1625 dbSNP
rs1373995971 1626 dbSNP
rs1056843212 1627 dbSNP
rs1259607447 1628 dbSNP
rs1339578466 1637 dbSNP
rs972487127 1640 dbSNP
rs1199523929 1645 dbSNP
rs937542685 1646 dbSNP
rs1441030654 1647 dbSNP
rs1430672392 1649 dbSNP
rs1258785646 1650 dbSNP
rs927435112 1677 dbSNP
rs1191509009 1681 dbSNP
rs1374857319 1682 dbSNP
rs1462737223 1683 dbSNP
rs962173757 1690 dbSNP
rs1399846353 1694 dbSNP
rs765707170 1698 dbSNP
rs759912578 1699 dbSNP
rs550262237 1711 dbSNP
rs942240926 1718 dbSNP
rs1168442201 1719 dbSNP
rs1425617610 1721 dbSNP
rs1019547066 1727 dbSNP
rs773064315 1730 dbSNP
rs983866681 1735 dbSNP
rs1009089073 1751 dbSNP
rs953743268 1755 dbSNP
rs1272687635 1760 dbSNP
rs1029280744 1761 dbSNP
rs1343355536 1761 dbSNP
rs530393064 1773 dbSNP
rs954695228 1776 dbSNP
rs1281667009 1779 dbSNP
rs186460121 1780 dbSNP
rs1255161771 1782 dbSNP
rs1184029929 1783 dbSNP
rs1264002189 1789 dbSNP
rs1480758575 1794 dbSNP
rs904535110 1794 dbSNP
rs151300319 1796 dbSNP
rs370517384 1811 dbSNP
rs1359659403 1812 dbSNP
rs1417850472 1816 dbSNP
rs148041562 1820 dbSNP
rs895925090 1821 dbSNP
rs1385696431 1822 dbSNP
rs1321206384 1826 dbSNP
rs1372654400 1827 dbSNP
rs1233188165 1834 dbSNP
rs1057355820 1836 dbSNP
rs551120711 1844 dbSNP
rs368743600 1845 dbSNP
rs1174311930 1855 dbSNP
rs879194677 1858 dbSNP
rs377274870 1859 dbSNP
rs963877547 1865 dbSNP
rs180958568 1866 dbSNP
rs1265540100 1867 dbSNP
rs904464538 1867 dbSNP
rs999963067 1867 dbSNP
rs1379510091 1878 dbSNP
rs1048346617 1879 dbSNP
rs1437559552 1887 dbSNP
rs559726195 1890 dbSNP
rs1020164882 1895 dbSNP
rs1010317911 1905 dbSNP
rs1057316908 1911 dbSNP
rs895478638 1911 dbSNP
rs1396013454 1917 dbSNP
rs937060600 1919 dbSNP
rs1330229688 1920 dbSNP
rs918272337 1922 dbSNP
rs972451199 1928 dbSNP
rs542804655 1937 dbSNP
rs906052856 1937 dbSNP
rs943764003 1939 dbSNP
rs1037891906 1946 dbSNP
rs1459545711 1946 dbSNP
rs942147350 1953 dbSNP
rs1244694762 1955 dbSNP
rs908127738 1970 dbSNP
rs1337013910 1971 dbSNP
rs527755969 1990 dbSNP
rs912342247 1991 dbSNP
rs1456296203 1993 dbSNP
rs988035419 1994 dbSNP
rs1251166287 2004 dbSNP
rs529105233 2005 dbSNP
rs1423228211 2007 dbSNP
rs983718369 2009 dbSNP
rs1164237081 2012 dbSNP
rs933352620 2012 dbSNP
rs923285444 2013 dbSNP
rs975258755 2015 dbSNP
rs1397603504 2020 dbSNP
rs564535117 2024 dbSNP
rs1415492352 2026 dbSNP
rs1374494337 2028 dbSNP
rs964785559 2028 dbSNP
rs1184098911 2034 dbSNP
rs1357484465 2035 dbSNP
rs1233926134 2038 dbSNP
rs925344909 2039 dbSNP
rs1305919765 2045 dbSNP
rs1206869266 2047 dbSNP
rs1419442486 2052 dbSNP
rs1482785916 2060 dbSNP
rs1185749653 2075 dbSNP
rs978575513 2084 dbSNP
rs968481548 2085 dbSNP
rs1020657195 2086 dbSNP
rs1010145237 2090 dbSNP
rs1035343554 2090 dbSNP
rs960002346 2090 dbSNP
rs1001176031 2094 dbSNP
rs1158407739 2101 dbSNP
rs1355522259 2102 dbSNP
rs905624198 2107 dbSNP
rs1006434116 2108 dbSNP
rs1037420430 2108 dbSNP
rs1377739777 2108 dbSNP
rs886602907 2111 dbSNP
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rs1048479303 2116 dbSNP
rs1212480094 2120 dbSNP
rs1311410979 2120 dbSNP
rs1208383592 2123 dbSNP
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rs1282388958 2125 dbSNP
rs1333351975 2125 dbSNP
rs1270559217 2126 dbSNP
rs1186775954 2133 dbSNP
rs953609842 2135 dbSNP
rs188240866 2140 dbSNP
rs1454119407 2145 dbSNP
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rs578062276 2167 dbSNP
rs1468918194 2172 dbSNP
rs552750771 2182 dbSNP
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rs1039050900 2186 dbSNP
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rs562127348 2194 dbSNP
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rs1348298224 2225 dbSNP
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rs1010222796 2246 dbSNP
rs1282016920 2250 dbSNP
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rs181905590 2286 dbSNP
rs149076397 2288 dbSNP
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rs931234914 2288 dbSNP
rs1328145065 2290 dbSNP
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rs1371487971 2298 dbSNP
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rs760811365 2299 dbSNP
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rs199634292 2301 dbSNP
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rs199579118 2304 dbSNP
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rs932107953 2310 dbSNP
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rs773766406 2314 dbSNP
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rs1283481413 2327 dbSNP
rs1353058509 2332 dbSNP
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rs902104186 2350 dbSNP
rs78220832 2351 dbSNP
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rs1205859208 2369 dbSNP
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rs925276423 2386 dbSNP
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rs945461479 2403 dbSNP
rs749238661 2410 dbSNP
rs1166335313 2415 dbSNP
rs867077381 2417 dbSNP
rs988673060 2427 dbSNP
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rs190452369 2435 dbSNP
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rs1036151630 2461 dbSNP
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rs1395372463 2466 dbSNP
rs879897963 2476 dbSNP
rs185348679 2478 dbSNP
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rs112513000 2484 dbSNP
rs1026799331 2487 dbSNP
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rs772376587 2509 dbSNP
rs1446474207 2511 dbSNP
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rs574395131 2519 dbSNP
rs984433781 2519 dbSNP
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rs1026452081 2523 dbSNP
rs554320623 2523 dbSNP
rs565935491 2524 dbSNP
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rs775340951 2528 dbSNP
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rs1350057011 2563 dbSNP
rs549321684 2563 dbSNP
rs1203410387 2565 dbSNP
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rs1008268656 2579 dbSNP
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rs1213327490 2641 dbSNP
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rs1190659433 2815 dbSNP
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rs950397845 2831 dbSNP
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rs1273911237 2841 dbSNP
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rs745652630 2845 dbSNP
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rs1275076222 2860 dbSNP
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rs1259069371 2867 dbSNP
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rs1008158575 2900 dbSNP
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rs1397353133 2995 dbSNP
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rs1056582682 3001 dbSNP
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rs1305552417 3020 dbSNP
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rs1219256118 3380 dbSNP
rs188112735 3384 dbSNP
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rs1333121025 3399 dbSNP
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rs1174126299 3403 dbSNP
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rs907371672 3463 dbSNP
rs16926321 3466 dbSNP
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rs1346651170 3493 dbSNP
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rs758444487 3504 dbSNP
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rs1229745605 3690 dbSNP
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rs68032156 3723 dbSNP
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rs767238165 3755 dbSNP
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rs1337536879 3776 dbSNP
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rs1004183689 3783 dbSNP
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rs887122584 3801 dbSNP
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rs1039506733 3878 dbSNP
rs554086716 3895 dbSNP
rs1353992861 3903 dbSNP
rs1290378848 3906 dbSNP
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rs546332337 3912 dbSNP
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rs1309488327 4022 dbSNP
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rs575623788 4041 dbSNP
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rs1206752421 4068 dbSNP
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rs1236641343 4208 dbSNP
rs1371787845 4209 dbSNP
rs1289309679 4215 dbSNP
rs1302701508 4216 dbSNP
rs1366307521 4218 dbSNP
rs1039763871 4220 dbSNP
rs868756216 4221 dbSNP
rs556070890 4224 dbSNP
rs147300843 4230 dbSNP
rs377561532 4230 dbSNP
rs539330499 4230 dbSNP
rs1227376292 4238 dbSNP
rs1052337751 4250 dbSNP
rs555398438 4251 dbSNP
rs1290425683 4254 dbSNP
rs1243138505 4258 dbSNP
rs1454109782 4262 dbSNP
rs1011029971 4266 dbSNP
rs927931400 4272 dbSNP
rs1156430250 4273 dbSNP
rs1480914097 4274 dbSNP
rs1158656165 4282 dbSNP
rs1455233747 4293 dbSNP
rs1395185688 4300 dbSNP
rs1192385683 4302 dbSNP
rs1409495472 4309 dbSNP
rs1458565431 4313 dbSNP
rs879145337 4321 dbSNP
rs1431957264 4330 dbSNP
rs1349299463 4332 dbSNP
rs535483060 4335 dbSNP
rs1294828520 4336 dbSNP
rs867333935 4341 dbSNP
rs376818483 4347 dbSNP
rs556184685 4351 dbSNP
rs999267288 4351 dbSNP
rs916299941 4353 dbSNP
rs1225888510 4355 dbSNP
rs1213318111 4361 dbSNP
rs1285387931 4362 dbSNP
rs1322184492 4363 dbSNP
rs1348819899 4369 dbSNP
rs1219976804 4370 dbSNP
rs1294069113 4381 dbSNP
rs539590320 4385 dbSNP
rs1046612901 4386 dbSNP
rs373470681 4390 dbSNP
rs773353451 4392 dbSNP
rs1231087788 4393 dbSNP
rs962849306 4397 dbSNP
rs767744983 4406 dbSNP
rs1412776463 4409 dbSNP
rs1297634246 4412 dbSNP
rs982997369 4424 dbSNP
rs866380874 4430 dbSNP
rs1365660163 4431 dbSNP
rs1382614160 4432 dbSNP
rs1428474828 4433 dbSNP
rs1352019321 4435 dbSNP
rs759370296 4435 dbSNP
rs1296068514 4436 dbSNP
rs1442442141 4441 dbSNP
rs951707245 4453 dbSNP
rs1436236707 4457 dbSNP
rs1378838192 4460 dbSNP
rs1227112344 4463 dbSNP
rs1375610587 4476 dbSNP
rs916835693 4485 dbSNP
rs1048673669 4488 dbSNP
rs1171541950 4491 dbSNP
rs1439829626 4504 dbSNP
rs931338963 4510 dbSNP
rs918582776 4528 dbSNP
rs1185356288 4529 dbSNP
rs973252309 4530 dbSNP
rs1385848327 4531 dbSNP
rs761897546 4541 dbSNP
rs1166217062 4543 dbSNP
rs1410205970 4544 dbSNP
rs1333049484 4545 dbSNP
rs1194486750 4547 dbSNP
rs1358962991 4549 dbSNP
rs912613523 4554 dbSNP
rs987269519 4556 dbSNP
rs1261519869 4560 dbSNP
rs1228286105 4561 dbSNP
rs1295530885 4564 dbSNP
rs1279040170 4570 dbSNP
rs1029951178 4571 dbSNP
rs1190431747 4577 dbSNP
rs1486129716 4580 dbSNP
rs1341516328 4582 dbSNP
rs953213306 4585 dbSNP
rs547601102 4586 dbSNP
rs1010809150 4588 dbSNP
rs1028899263 4588 dbSNP
rs1205398983 4590 dbSNP
rs998556848 4591 dbSNP
rs899854756 4592 dbSNP
rs201198711 4594 dbSNP
rs1018287061 4600 dbSNP
rs1257062930 4608 dbSNP
rs752260311 4615 dbSNP
rs774873990 4615 dbSNP
rs191672841 4616 dbSNP
rs1030687129 4623 dbSNP
rs1253060633 4630 dbSNP
rs1470734742 4631 dbSNP
rs906291290 4633 dbSNP
rs999571110 4633 dbSNP
rs1435057337 4634 dbSNP
rs1317187492 4642 dbSNP
rs1046142642 4644 dbSNP
rs1328287161 4644 dbSNP
rs186835214 4645 dbSNP
rs1343184751 4648 dbSNP
rs772032033 4648 dbSNP
rs1276081757 4653 dbSNP
rs1052685255 4658 dbSNP
rs1263550671 4661 dbSNP
rs1328177458 4668 dbSNP
rs935213044 4679 dbSNP
rs906440802 4681 dbSNP
rs1416374601 4684 dbSNP
rs1046317517 4685 dbSNP
rs947672631 4688 dbSNP
rs368730294 4704 dbSNP
rs1244455637 4711 dbSNP
rs1481227843 4713 dbSNP
rs916267162 4716 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000546136.1 | 3UTR | UUGGCCAUUUUUUCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28260 Renal cortex and medulla 0.732 2.2e-3 0.588 1.7e-2 13 Click to see details
GSE42095 Differentiated embryonic stem cells -0.558 2.8e-3 -0.480 1.0e-2 23 Click to see details
GSE28544 Breast cancer 0.291 8.4e-2 0.211 1.6e-1 24 Click to see details
GSE32688 Pancreatic cancer 0.145 2.1e-1 0.078 3.4e-1 32 Click to see details
GSE17498 Multiple myeloma 0.072 3.3e-1 0.074 3.2e-1 40 Click to see details
GSE38226 Liver fibrosis 0.085 3.6e-1 0.068 3.8e-1 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.075 3.8e-1 -0.116 3.1e-1 20 Click to see details
GSE21687 Ependynoma primary tumors 0.038 3.8e-1 0.030 4.1e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.061 3.9e-1 0.051 4.1e-1 24 Click to see details
GSE19350 CNS germ cell tumors -0.077 4.1e-1 0.358 1.3e-1 12 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.005 4.9e-1 0.145 2.4e-1 25 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.005 4.9e-1 0.145 2.4e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
37 hsa-miR-1231 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075228 PHF13 PHD finger protein 13 2 6
MIRT266936 HDGF heparin binding growth factor 2 6
MIRT441394 SOX5 SRY-box 5 2 2
MIRT446329 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 2 2
MIRT446438 THYN1 thymocyte nuclear protein 1 2 2
MIRT482781 STIM1 stromal interaction molecule 1 2 2
MIRT497714 CYP1A1 cytochrome P450 family 1 subfamily A member 1 2 2
MIRT500907 STARD13 StAR related lipid transfer domain containing 13 2 2
MIRT503251 KIF18B kinesin family member 18B 2 2
MIRT504750 TEP1 telomerase associated protein 1 2 4
MIRT512158 CD164 CD164 molecule 2 6
MIRT518043 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 4
MIRT526038 GMDS GDP-mannose 4,6-dehydratase 2 2
MIRT529828 ARGFX arginine-fifty homeobox 2 2
MIRT531808 POLD3 DNA polymerase delta 3, accessory subunit 2 2
MIRT533139 WNT10A Wnt family member 10A 2 2
MIRT538612 CCT5 chaperonin containing TCP1 subunit 5 2 4
MIRT555617 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT561705 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT562301 GINM1 glycoprotein integral membrane 1 2 2
MIRT566732 MSH6 mutS homolog 6 2 2
MIRT569369 IMPG1 interphotoreceptor matrix proteoglycan 1 2 2
MIRT572314 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT574602 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT612023 FOXF2 forkhead box F2 2 2
MIRT616950 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 2 2
MIRT624175 DERL2 derlin 2 2 2
MIRT647634 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT659393 CORO2A coronin 2A 2 2
MIRT659955 CXCL10 C-X-C motif chemokine ligand 10 2 2
MIRT684001 FOLR1 folate receptor 1 2 2
MIRT688143 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688609 CYBRD1 cytochrome b reductase 1 2 2
MIRT693583 SLC39A1 solute carrier family 39 member 1 2 2
MIRT699922 RUFY2 RUN and FYVE domain containing 2 2 2
MIRT712961 PET117 PET117 homolog 2 2
MIRT723950 TMEM184A transmembrane protein 184A 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved sensitive High Lung Adenocarcinoma cell line (A549)
hsa-miR-1231 Aromatase Inhibitor sensitive Low Breast Cancer cell line (MCF-7)
hsa-miR-1231 Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1231 Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-miR-1231 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1231 Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-mir-1231 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (HS578T)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-mir-1231 Androstenedione+Anastrozole sensitive cell line (MCF-7)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (KYSE)
hsa-mir-1231 Fluorouracil 3385 NSC19893 approved sensitive cell line (KYSE)
hsa-mir-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1231 Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (BAS)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-1231 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1231 Tamoxifen+Fulvestrant resistant cell line (LCC9)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-1231 Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR70)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-1231 Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR200)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-1231 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved sensitive cell line (H460)
hsa-miR-1231 Cisplatin 5460033 NSC119875 approved resistant cell line (OVCAR3)

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