miRTarBase - #MIRT441692


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pre-miRNA Information
pre-miRNA hsa-mir-499a   
Genomic Coordinates chr20: 34990376 - 34990497
Description Homo sapiens miR-499a stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-499a-3p
Sequence 70| AACAUCACAGCAAGUCUGUGCU |91
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30512073 1 COSMIC
COSN8868602 4 COSMIC
COSN20079766 19 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs768246420 3 dbSNP
rs3746444 4 dbSNP
rs761417578 6 dbSNP
rs150018420 8 dbSNP
rs1406470841 9 dbSNP
rs772652105 11 dbSNP
rs1189840352 16 dbSNP
rs759966338 17 dbSNP
rs1475405341 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ABLIM1   
Synonyms ABLIM, LIMAB1, LIMATIN, abLIM-1
Description actin binding LIM protein 1
Transcript NM_001003407   
Other Transcripts NM_002313 , NM_006720   
Expression
Putative miRNA Targets on ABLIM1
3'UTR of ABLIM1
(miRNA target sites are highlighted)		 
>ABLIM1|NM_001003407|3'UTR
   1 GTCCCACTCGTGAATGGCAATTAGAGAAAGGACTGACAGTGGCGGTGCCCCATAGGATGTCATATTGAGGCCCAAACTTG
  81 ATTGGAGAATTTGCAAACTACCGTCGCTCAGCAACACCAAAAAGAGAAAGTCTGGTTAAAACACCATGAGTCAAATGTCG
 161 GGCCAGCCAACAGTAACACTTGCCAAGAAGCATGGCGTAGAAATTTCTATGTTCCGAAACACAGAGTAGTGTCCACATGT
 241 GAGCTTTTCACATTACCTTATGTATACAACAGGAGCTGCGTTGTTTTCTTCTTTTTCTTTTCCTTTATCTGTTGTCCAAC
 321 AACAGTGCTGACTGTCCGGATAAGAGCTGGCAAGTGCCCTTAGGATGCCGCATGGGAAAAATCGGTTATCATAATTTCAA
 401 AGTATAAATATATTTATTAAGTAGCGCTGCGGCTAAGAAGGAAGAGTGAGGGGTCTGTCCATGGGGTGGCAGTGATTTCA
 481 CACCCGCCTTTCTTGAATGGCTTCGTGTTACTCAGCCGTGCCCTGGCAGGAATGGAACTCCATCAGGGAACAGGGCAGCT
 561 CTGTTTGAATGGGGTGAAAAACAGCAAAATTAATTCTTAGCAAGCTCCTTGTTCTCTACTGTTCACCGGGACCTGGCTGG
 641 CAAATGACTTAGCTATTAGTATATTTAAAAACTGTTCAAAAGCAAAAGAGAAGGAACAGGAATGAAAGGAAACCTTCCCT
 721 TAACTCTTTCTGCTTCCCATAGCAGGTCTGGTTCCTGCTCCCCGCCTAGGACAGGAGCTGTCTGGAGCTCCACCTTTGCA
 801 AAGAAAGGAAAAACACAAATTGCCCCCAGATTGGCCCAGTGGCATGCCATTAGGTGATTTTGCATAGGGGCCATATCATT
 881 CATGGCCAAAAAAAACCAAAAAGCAAAAAACAAAAACAAGTCCCATGTCCTACTGACTCTAGTTCTTCCAGTCGTTATCC
 961 TCTGCTGTCTCTCTGGCATCCTATGAATCAGATCAAGCCCATGCTGTTGTTGGTTTTTAAGGTTTCTTTCAATAATAGGC
1041 TAAGGAAAGACATGTTTTTCTCTTTTAAATCTCTGCAACTCCAAAGTAGACTCCTTCGAACGTATTTAATTTGGCCTTTT
1121 CAGCTTTCTTCTTGCCCAGCTCTGTCGAATTCATGGGTGTGTGTGCACATGTTGGTTTCACTCACCCAGAGTAATTTTGT
1201 GAGCATGCATGTGCTTTTTAATTTCTGCTTGAATGTTTGTCCTGCTGTGTTGCAGCTTCTAAAGACATTGTCACCGAGTG
1281 TGTGTGACTCAAAGATCAAGAGTGAGGCTAAACTGCGACCCCAACATCACTTCCTTCATGGAAAGGTGTTGGCGCTGATG
1361 TAGCTCATGGAAGGATCAGACTGGGAACCACAGAGGAAGGATGAGGTGGGATGTGGAGGTCAGAGCATCTCACGAGAGTC
1441 CCTCAGGCTCTGCAACACTAGATTCGAATATGAGCCTAGGGTTTCCCCAACACGTGCGTGCATATGAAACCACATCATGA
1521 TTCCCGACGTGAGTTAGATGAGGGAGAGTTTGTGTAACTCCACACCCAGGAGGGTAAGCCACTTTATTATCATGCTTTGG
1601 GGCTGTGCTTAAGAATTTAAGCTCTGTTTTAAAGCCGAAGAAGAAAACATTTGAATTTACCTTCATATGCCACTAAGAAC
1681 AAAAGCTCTGAAGTTCTTCCTGCTGGCACCAAATATTAGGATTACAAGCTGTCTCTCTGACACCAGTGGTAAAAAAGCAA
1761 GTAGAATAGTTTCTGAGTCTGTGTTGCAGCCTCTGACACGTGGCTCACCGCTGTCATTTGGGGGATGGAATGAACAGTCA
1841 CTGTTCTATAGCATCCTCCTGTGCTCTTACCTAAGGAATCTAAATTGTCCTAGCCTTCCATTGCTATGCACTGAATGAGG
1921 ACTACTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGATCTACTAACATGTTTAG
2001 CAAATGGCTCTGACAGGGTGGCCATGAGCAGATGAGACCAGCTCTTGCTTGGTTGGAAGCCACACTGCAGTTTGCAGTTT
2081 AGCCTTTGGTGTCTCAGTGGCTTCTTGCTTATTCCATGCTTTTTCTATCCCATCCTCTCTCTGTGCCCTCCTGCAATGGC
2161 AGCCTTGGCACAATGCCTGGGTGTCCTCATCCTTGCTTTACTCTGGAAAGTGTGGGGATGGAGAGGATGGTGCATTTCCA
2241 GTGCTTCCTTACCTGTCAATAACAATGGTGGCCACCTGGGTCCCAGCACTTGGCTGGTGGAGAGATTTTTTTCATTATGG
2321 AGCTAATAAAGGGTCCCTACGTTTTACATTGATTAATGAATTATCACCCAGACATGTGCAGATGAAATGTCAATATAAGA
2401 AAAATCAAGGTATTTGGGAAACATGGGCATAATCAGGTAGTTTTGCTAAAATTCCTCTTCCTTGGTCTACATAAAGAAGA
2481 CATGGGTCTGTCATAGAATGGGGACATTAGACTGAAAACTGGGACAACCCCCTTCCTTATTTTATAGAGACTAGGAGTTA
2561 AGGGGCCTGCCTAAGATTGCAGTGATAAAGAACTGAACCCTAAATCAGCTCCCACTAATGAAACCCTGCTTTCCTTGTAT
2641 CTTTTAAACTCAGTTCTGCATCCAACTTGAGAAGAAAAAAAGCTTCTTTCCATATCAAGTACCATATGAGTTCATTTAAA
2721 CTGCACCTTGCAGAAATGCATTGCCAGAAAGCACCAGTAGCCTCCTATCTGCAAGCAGAGTAGTGCTCTGCTCTGGGGAG
2801 GGGTCATTGGAAACCATAATGCAGAGTGGGCCCCCTACTCCATTTCCCAGCAAAAGGCTCCAGCTGGAGGGATGGGTTGT
2881 GGGGCAACCTGGTTCCTGCTAACTGCCAGATTGAATGTGTGGGCTAGAATGCCTGCACATTTAGTTAAACTGGGCTCAGC
2961 ATGCTTGTCCTCAAAATGTCCATCCTGGTCACAGCACACAAGATGGCTATTGGTCTGCTTTTACCCTACCCTGTACTATA
3041 CATGAAAATTCCAGTTATTAACACACTCAAACTGGTGGAGCTTGTTCACCCTAGGAAGGGGATTGTATATATGGCAGGCT
3121 TCCCTGGTGCCGATGTAAAGGGCTACATTTGGGAACATTTGACTTCCTTGGGACTCTTAAGTGCATAATGATGGCATGAA
3201 GTAAAAGGGGCCTCAATGATGATAGGAAAATCAGTTCTTTTAAAATTTCTTCAAGAAAATCCAGGCTATCACATAGTCTT
3281 TCTGTGTGACTTATTAGGAGATAGGAAGAGCATTGGGAAACTTGCACAGCTAGCTATGCATCTACATTTTGGTTTGGGGT
3361 TAGTTATGAAATGTTCTTAATATGACGTGTTCAATAACTTCACATAAACTTCCTGTTCTCCAAAACCTCAAAGAGATAGA
3441 GTTAATGAGTTGTTGTTTTTTTTTAAATGGGGGTAGTTTTCTATCTGTCATGGGCTCTAGCATCTACTCCGCTACCCAAT
3521 TCTGTCATCTCCAAGCTGAGTTTCCTCTTCTGAGGCAGAGGCTGGAGCAGTTCTTTTTCAGTTCTCATCCTCTCCATCCC
3601 AATCCAGTATATCAATCAACTCTAACTCGGAGACGTCTAGCTGGCAATGTTTCTAAAACTTTCACTGGATTTCTTTAGAC
3681 ATTGAAGCAAACATTTTTTTCTAAGAATTGCTTCTCAGATGATGATATCAAATGTATATGCTTTTGCAAGTTTGAAAAGT
3761 TCAAATTAACCACTTTTGACTAGGTAAGTCTTTCTAAAAACCATTTAAAGCTAACTGGGTCTTAGCATCCTCCTGTGTAT
3841 GGAAGAGACAGGTGACCGCTCCAGGTTGGGTGCTCACAGAACCCTTTTCCTGACTCTCATGGAAGATGGTGGAAGGAAAA
3921 TAGACTGTCTCATCAACCCTCCTGTGTCCTCTGAAGCAATCTCAGTTTTTATTAACCACCTCTTCTGTGTTTCTGGTAGC
4001 TATTTAACCTGTATTTAATCTGTACTTCCTATGCCAGCCTCAATTTTATTTGATTTTTACAATTATTCTCTTCTAACCAA
4081 TGAAGTGTTTGTCAGTATGCCCCAAAGCTTGCTCTTTTGTGCTCCCTTTTGAATAACTTTCTATCCAGAAAAAGAGATTA
4161 TTTGGGACTTGAGATTTGCAGTGATACCAACTTATAGCAATGATGTACTTTAAGGGAACTACCCAACTATGTTGTGATAG
4241 AAGAAAGAGAAACCTTCACTTTGGCATTTTTTTTTAATCACTGTTTATTTTTCTGTTTGCGGCCCAGGAAGCAGTGGGAG
4321 GTGGTGGCAGATATGCTTTGCATATGGATTGTTATGTTTTTATTTGGGCAAGTTTAATCATGGAAAACTCAAAAAGAAGG
4401 GGGGAAATGGTCAGTTTAAGCCAAAAGAAACTTTCTAAACAATGTATAGGTACACAGCAAAATTAAACAAATCCAACAAT
4481 TTCTGAAGCTTAGTGTAATTGAGTGGTGGTTGTTATTCAATAAAATTATTCCCAAAAGTGTTTCTCCTAAGAGTGCAGTT
4561 CCCATGAGTCACTTCCTGAACCCATTGACCAAAGGTGGACAGAGACAATCCTGTAGACCTTGACATTCAGAAAGATGTGA
4641 GCTGCTTACTGATCATATATGCATACGTTTCTTTACAGCAGAGGAAACCATTGTCCACAAAACTGATGTTCTTTTGGGGT
4721 TTTATGTACAGACTTGTCCAATCATGTGTGTGGTTCCTGCGAGTTGCTGATGACTCCGCATTGAAGCTCTCTGAGTTCTT
4801 TGATTTTAAGTTGGGTTTATGGAATTTTTTCAAATGTTGGAAGGTGTGTGGTTCTTCCTGCCCTCCCTCCCCTTTTGGAA
4881 ATATGAAAGCAAATGTTTAGAAGAATTCCTTTTGAAAAGCTGTGTCGTGTTCCCTGTGAAACTGAGCAGGTGTGTGTTGG
4961 CGCGCTAAGTGCCACATGCTTGTGTGTAGAGGAGGAGGTGGCCCTGCCGGCTCCGCGCTGCTGTGCCTGTGATCCCTACC
5041 TGCTCCCCGCTCCTGTTGCCAGCAGCACTCACTGCACTCCTTTGTCATATACTCTGCATCACTGTCATACTCACAACTTC
5121 GTGAATAAAGTTGTGTGCTTTATTCGTAGAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucgugUCUGAACGACACUAcaa 5'
               |||:|||| |||||   
Target 5' acttgAGATTTGCAGTGATacc 3'
 4167 - 4188 133.00 -13.02
2 
miRNA  3' ucGUGUCUGAACGACACUACAa 5'
            ||::|: | || ||||| | 
Target 5' tcCATGGGGTGGCAGTGATTTc 3'
 458 - 479 132.00 -9.80
3 
miRNA  3' ucGUGUCUGA-ACGACACUAcaa 5'
            | || ||| ||:||||||   
Target 5' taCCCA-ACTATGTTGTGATaga 3'
 4220 - 4241 127.00 -10.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30480697 5 COSMIC
COSN31786186 10 COSMIC
COSN30523700 17 COSMIC
COSN30149587 24 COSMIC
COSN30468390 31 COSMIC
COSN31497926 44 COSMIC
COSN26964552 55 COSMIC
COSN32052913 80 COSMIC
COSN30475725 105 COSMIC
COSN31497559 112 COSMIC
COSN31580667 205 COSMIC
COSN20435015 216 COSMIC
COSN16743803 238 COSMIC
COSN28633341 243 COSMIC
COSN31480912 288 COSMIC
COSN21472389 330 COSMIC
COSN28056791 486 COSMIC
COSN22066956 627 COSMIC
COSN20092228 628 COSMIC
COSN22986631 757 COSMIC
COSN22876299 1050 COSMIC
COSN8919043 1052 COSMIC
COSN25813231 1316 COSMIC
COSN1112769 1726 COSMIC
COSN28092095 1746 COSMIC
COSN20107594 1930 COSMIC
COSN28586436 1962 COSMIC
COSN8530229 2089 COSMIC
COSN6057432 2265 COSMIC
COSN16760402 2408 COSMIC
COSN19046905 3342 COSMIC
COSN21403121 3447 COSMIC
COSN29604978 3455 COSMIC
COSN25794061 3464 COSMIC
COSN24238897 3579 COSMIC
COSN20692056 3951 COSMIC
COSN24620590 4036 COSMIC
COSN8149633 4248 COSMIC
COSN20107591 4267 COSMIC
COSN10060255 4720 COSMIC
COSN1472115 4893 COSMIC
rs4751906 1239 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs79725027 3 dbSNP
rs371635584 4 dbSNP
rs1400101017 6 dbSNP
rs758370980 7 dbSNP
rs556239056 9 dbSNP
rs181763007 10 dbSNP
rs754739018 17 dbSNP
rs970186198 20 dbSNP
rs750589056 33 dbSNP
rs767661626 34 dbSNP
rs761938664 40 dbSNP
rs1191085607 41 dbSNP
rs376834163 43 dbSNP
rs753280388 44 dbSNP
rs1259698080 46 dbSNP
rs1279991196 47 dbSNP
rs1213587945 48 dbSNP
rs915859304 48 dbSNP
rs984819606 50 dbSNP
rs1487002493 62 dbSNP
rs558922160 68 dbSNP
rs912488306 70 dbSNP
rs144797705 72 dbSNP
rs954881113 75 dbSNP
rs1423493958 77 dbSNP
rs993609153 78 dbSNP
rs1472608912 87 dbSNP
rs966152887 94 dbSNP
rs1360039787 98 dbSNP
rs535526854 99 dbSNP
rs116278808 102 dbSNP
rs1008351787 103 dbSNP
rs1425391553 105 dbSNP
rs1256588330 108 dbSNP
rs1208073487 114 dbSNP
rs889548598 117 dbSNP
rs1272913339 119 dbSNP
rs749858149 123 dbSNP
rs780634111 133 dbSNP
rs1308414199 138 dbSNP
rs1011280080 142 dbSNP
rs968822693 144 dbSNP
rs1021707673 146 dbSNP
rs1223989711 159 dbSNP
rs893039457 160 dbSNP
rs1013117840 164 dbSNP
rs1450742194 172 dbSNP
rs149419975 178 dbSNP
rs1245388271 179 dbSNP
rs747100903 186 dbSNP
rs1210707898 192 dbSNP
rs1036368870 193 dbSNP
rs934578255 196 dbSNP
rs7919465 209 dbSNP
rs1437907955 212 dbSNP
rs1045572400 215 dbSNP
rs1220020493 216 dbSNP
rs1265099780 224 dbSNP
rs948780968 233 dbSNP
rs1046765765 237 dbSNP
rs112726690 238 dbSNP
rs112346723 239 dbSNP
rs1057139 243 dbSNP
rs1039404886 279 dbSNP
rs919498948 280 dbSNP
rs972263868 282 dbSNP
rs1355001599 286 dbSNP
rs531236888 286 dbSNP
rs1274619515 288 dbSNP
rs879736626 288 dbSNP
rs376537977 311 dbSNP
rs987122540 313 dbSNP
rs377052963 320 dbSNP
rs1456866395 322 dbSNP
rs923843665 325 dbSNP
rs1243865551 330 dbSNP
rs569995789 337 dbSNP
rs79672630 338 dbSNP
rs548338608 339 dbSNP
rs1011644878 340 dbSNP
rs1161161135 344 dbSNP
rs765122538 350 dbSNP
rs185144991 365 dbSNP
rs1339391855 369 dbSNP
rs181359735 370 dbSNP
rs907127231 372 dbSNP
rs1217616923 379 dbSNP
rs1257890970 382 dbSNP
rs1316410675 383 dbSNP
rs1368884863 395 dbSNP
rs1045970111 400 dbSNP
rs547499059 402 dbSNP
rs1185425457 406 dbSNP
rs1243909912 410 dbSNP
rs1003451682 411 dbSNP
rs1249824874 411 dbSNP
rs527541249 412 dbSNP
rs10978 420 dbSNP
rs563940685 421 dbSNP
rs1025839251 424 dbSNP
rs41293060 425 dbSNP
rs575491521 426 dbSNP
rs760840887 430 dbSNP
rs1399052563 432 dbSNP
rs1358713018 443 dbSNP
rs1006553967 450 dbSNP
rs972044606 455 dbSNP
rs1344997488 458 dbSNP
rs1465495154 468 dbSNP
rs1199242743 469 dbSNP
rs1340405756 470 dbSNP
rs1300516259 485 dbSNP
rs944948915 486 dbSNP
rs1261257300 488 dbSNP
rs150283420 489 dbSNP
rs986686194 505 dbSNP
rs774489726 511 dbSNP
rs1320988487 513 dbSNP
rs935144195 517 dbSNP
rs554862103 518 dbSNP
rs1418508055 520 dbSNP
rs989893091 521 dbSNP
rs772169221 529 dbSNP
rs541489220 543 dbSNP
rs1366978892 549 dbSNP
rs1407159515 554 dbSNP
rs74160408 555 dbSNP
rs1330855870 556 dbSNP
rs947384259 568 dbSNP
rs914544479 569 dbSNP
rs991574669 571 dbSNP
rs1031308039 572 dbSNP
rs1284166799 573 dbSNP
rs928703018 574 dbSNP
rs998556374 590 dbSNP
rs1266453625 596 dbSNP
rs971303184 618 dbSNP
rs115007772 619 dbSNP
rs879567739 620 dbSNP
rs1438544409 626 dbSNP
rs1156240386 627 dbSNP
rs1013153672 628 dbSNP
rs1458133747 632 dbSNP
rs1292560757 655 dbSNP
rs1390494394 664 dbSNP
rs1385417805 666 dbSNP
rs534733206 672 dbSNP
rs962355045 672 dbSNP
rs1240045209 674 dbSNP
rs1307254233 675 dbSNP
rs1361637233 677 dbSNP
rs1017934183 691 dbSNP
rs1265030561 709 dbSNP
rs1354030166 717 dbSNP
rs1197261479 721 dbSNP
rs1049370447 723 dbSNP
rs188606528 739 dbSNP
rs1269883420 742 dbSNP
rs1176667715 744 dbSNP
rs1204681869 757 dbSNP
rs1244499379 758 dbSNP
rs374543329 761 dbSNP
rs1051266769 763 dbSNP
rs759867313 764 dbSNP
rs944732820 766 dbSNP
rs902321215 767 dbSNP
rs1043673541 768 dbSNP
rs946578952 775 dbSNP
rs141835986 778 dbSNP
rs774558721 794 dbSNP
rs183849893 798 dbSNP
rs1396638293 800 dbSNP
rs912116825 803 dbSNP
rs1320080186 806 dbSNP
rs916498869 807 dbSNP
rs1050670614 819 dbSNP
rs1258515217 820 dbSNP
rs1428025467 823 dbSNP
rs1196698709 828 dbSNP
rs138330657 829 dbSNP
rs932243188 834 dbSNP
rs1483295590 842 dbSNP
rs915374590 847 dbSNP
rs1307088256 854 dbSNP
rs1180716790 862 dbSNP
rs1057143 863 dbSNP
rs1057144 864 dbSNP
rs1424845981 865 dbSNP
rs386747843 865 dbSNP
rs879592970 865 dbSNP
rs1308390285 871 dbSNP
rs1169197749 873 dbSNP
rs147057118 875 dbSNP
rs1466628294 882 dbSNP
rs1302392794 883 dbSNP
rs1377060621 884 dbSNP
rs547440191 888 dbSNP
rs532477878 889 dbSNP
rs1174188643 893 dbSNP
rs533170270 895 dbSNP
rs1253782007 896 dbSNP
rs1430065444 896 dbSNP
rs974208330 896 dbSNP
rs1181775853 903 dbSNP
rs962964334 910 dbSNP
rs977069281 916 dbSNP
rs971117421 928 dbSNP
rs1205698051 929 dbSNP
rs1191880687 931 dbSNP
rs191311014 932 dbSNP
rs1012794658 937 dbSNP
rs958879533 938 dbSNP
rs776551084 949 dbSNP
rs552000699 953 dbSNP
rs1029429454 954 dbSNP
rs1323709631 957 dbSNP
rs999649630 961 dbSNP
rs1368006630 963 dbSNP
rs902352190 967 dbSNP
rs1299040205 980 dbSNP
rs897895608 983 dbSNP
rs530814282 984 dbSNP
rs1287125055 992 dbSNP
rs768949267 994 dbSNP
rs747195192 999 dbSNP
rs1224243404 1002 dbSNP
rs1226245012 1006 dbSNP
rs1010737722 1007 dbSNP
rs1193264014 1010 dbSNP
rs1351975657 1012 dbSNP
rs563470239 1016 dbSNP
rs1432718917 1023 dbSNP
rs1447026674 1030 dbSNP
rs1441640785 1036 dbSNP
rs1159392497 1038 dbSNP
rs542123500 1039 dbSNP
rs1357196537 1046 dbSNP
rs1418148065 1049 dbSNP
rs574326566 1051 dbSNP
rs1336161257 1052 dbSNP
rs746512742 1053 dbSNP
rs1350272424 1062 dbSNP
rs1470223582 1075 dbSNP
rs1435436687 1078 dbSNP
rs1406982626 1086 dbSNP
rs141671745 1088 dbSNP
rs371867374 1097 dbSNP
rs1307981521 1098 dbSNP
rs1350822379 1100 dbSNP
rs779609213 1101 dbSNP
rs367650650 1102 dbSNP
rs577055064 1116 dbSNP
rs775839785 1117 dbSNP
rs188787972 1127 dbSNP
rs1177938796 1134 dbSNP
rs1459531444 1136 dbSNP
rs907162614 1146 dbSNP
rs932219167 1147 dbSNP
rs772367050 1150 dbSNP
rs1437849385 1153 dbSNP
rs915512750 1154 dbSNP
rs537277755 1163 dbSNP
rs1045818299 1165 dbSNP
rs1053956219 1169 dbSNP
rs553391703 1175 dbSNP
rs1414716807 1190 dbSNP
rs1404562245 1195 dbSNP
rs1162498202 1205 dbSNP
rs1402189301 1209 dbSNP
rs4751906 1239 dbSNP
rs1374057935 1240 dbSNP
rs918661124 1245 dbSNP
rs111585103 1248 dbSNP
rs147815893 1254 dbSNP
rs1206320980 1258 dbSNP
rs971574292 1261 dbSNP
rs1320427175 1269 dbSNP
rs916886222 1270 dbSNP
rs1330526109 1271 dbSNP
rs1284585568 1273 dbSNP
rs143135232 1275 dbSNP
rs1257928899 1276 dbSNP
rs986088860 1291 dbSNP
rs1436153514 1292 dbSNP
rs958644817 1296 dbSNP
rs1027549948 1300 dbSNP
rs1189637397 1308 dbSNP
rs547427960 1310 dbSNP
rs538745515 1316 dbSNP
rs1472629884 1331 dbSNP
rs1029706159 1338 dbSNP
rs1425569269 1341 dbSNP
rs961824795 1344 dbSNP
rs376324625 1353 dbSNP
rs750136374 1367 dbSNP
rs34610844 1371 dbSNP
rs1397955074 1378 dbSNP
rs966484706 1379 dbSNP
rs1008896730 1388 dbSNP
rs1358041982 1389 dbSNP
rs1022040691 1390 dbSNP
rs1455723252 1393 dbSNP
rs890545405 1397 dbSNP
rs1028986512 1401 dbSNP
rs185523529 1411 dbSNP
rs1404956839 1413 dbSNP
rs894042372 1418 dbSNP
rs1412142372 1424 dbSNP
rs1279469976 1428 dbSNP
rs551939255 1433 dbSNP
rs1033608505 1434 dbSNP
rs1054071585 1435 dbSNP
rs1003829666 1437 dbSNP
rs1202788880 1438 dbSNP
rs1445579268 1441 dbSNP
rs1192747218 1444 dbSNP
rs935584553 1447 dbSNP
rs1478992761 1458 dbSNP
rs906447206 1465 dbSNP
rs757102887 1466 dbSNP
rs530586164 1467 dbSNP
rs1187168873 1489 dbSNP
rs1412228773 1490 dbSNP
rs1299653617 1491 dbSNP
rs3802735 1493 dbSNP
rs1398993122 1494 dbSNP
rs1298041473 1496 dbSNP
rs764139895 1497 dbSNP
rs548139174 1498 dbSNP
rs1344407315 1500 dbSNP
rs1232104189 1504 dbSNP
rs1288239077 1512 dbSNP
rs949821008 1514 dbSNP
rs1488779218 1515 dbSNP
rs374298801 1517 dbSNP
rs1259460288 1518 dbSNP
rs917023068 1519 dbSNP
rs59580984 1523 dbSNP
rs145085954 1525 dbSNP
rs911347004 1526 dbSNP
rs376424850 1528 dbSNP
rs756178615 1529 dbSNP
rs541053335 1536 dbSNP
rs532227693 1542 dbSNP
rs1418751841 1552 dbSNP
rs961937509 1553 dbSNP
rs1156423623 1558 dbSNP
rs1383288169 1575 dbSNP
rs922872129 1581 dbSNP
rs201517657 1594 dbSNP
rs1014677253 1597 dbSNP
rs915013444 1605 dbSNP
rs1311609886 1607 dbSNP
rs1354480726 1613 dbSNP
rs1239727940 1621 dbSNP
rs987745749 1624 dbSNP
rs1259148740 1626 dbSNP
rs954815291 1629 dbSNP
rs1289503047 1633 dbSNP
rs1266389608 1636 dbSNP
rs796946968 1639 dbSNP
rs1238306552 1642 dbSNP
rs1438489173 1659 dbSNP
rs1179261222 1661 dbSNP
rs989195459 1667 dbSNP
rs959194943 1670 dbSNP
rs757670921 1674 dbSNP
rs564937969 1704 dbSNP
rs1033970352 1715 dbSNP
rs996181363 1716 dbSNP
rs1460385716 1717 dbSNP
rs748874997 1725 dbSNP
rs1377788872 1731 dbSNP
rs1446050076 1732 dbSNP
rs1032364195 1742 dbSNP
rs999741904 1745 dbSNP
rs902800677 1746 dbSNP
rs1305120894 1751 dbSNP
rs1342543742 1757 dbSNP
rs1245785782 1760 dbSNP
rs570901536 1763 dbSNP
rs1332382118 1766 dbSNP
rs11815817 1770 dbSNP
rs755820894 1779 dbSNP
rs576513145 1781 dbSNP
rs1258586945 1786 dbSNP
rs897131701 1792 dbSNP
rs1167303922 1798 dbSNP
rs1038427019 1799 dbSNP
rs796226784 1800 dbSNP
rs1424072758 1804 dbSNP
rs889877940 1805 dbSNP
rs895551980 1807 dbSNP
rs1417624617 1808 dbSNP
rs3802734 1809 dbSNP
rs193094691 1810 dbSNP
rs570018453 1812 dbSNP
rs11196743 1816 dbSNP
rs766587338 1822 dbSNP
rs1482645390 1823 dbSNP
rs114519601 1825 dbSNP
rs1396875645 1826 dbSNP
rs1292848013 1833 dbSNP
rs1353361412 1839 dbSNP
rs1230583773 1840 dbSNP
rs1308031265 1842 dbSNP
rs538682118 1843 dbSNP
rs1317293844 1848 dbSNP
rs1202319272 1860 dbSNP
rs907838141 1861 dbSNP
rs1257300076 1870 dbSNP
rs1483264228 1876 dbSNP
rs1199556788 1889 dbSNP
rs1218727536 1890 dbSNP
rs11196742 1900 dbSNP
rs1196362971 1903 dbSNP
rs188773771 1907 dbSNP
rs921803553 1908 dbSNP
rs975209966 1917 dbSNP
rs958113268 1918 dbSNP
rs1370381428 1920 dbSNP
rs1306585211 1924 dbSNP
rs959417812 1928 dbSNP
rs1312503181 1929 dbSNP
rs1032334686 1930 dbSNP
rs59678354 1930 dbSNP
rs1298624481 1931 dbSNP
rs1360986807 1937 dbSNP
rs1212759633 1938 dbSNP
rs1303270271 1941 dbSNP
rs779570784 1942 dbSNP
rs999563935 1948 dbSNP
rs1312273063 1959 dbSNP
rs1355628508 1962 dbSNP
rs1277561675 1964 dbSNP
rs966931470 1966 dbSNP
rs1175905494 1968 dbSNP
rs1264404750 1968 dbSNP
rs149179397 1972 dbSNP
rs1270273093 1974 dbSNP
rs1485717133 1976 dbSNP
rs1185316501 1978 dbSNP
rs1159426924 1980 dbSNP
rs1173157197 1980 dbSNP
rs1240446597 1980 dbSNP
rs1270010838 1980 dbSNP
rs1283068605 1980 dbSNP
rs1286638375 1980 dbSNP
rs1344423206 1980 dbSNP
rs1385391634 1980 dbSNP
rs1393314287 1980 dbSNP
rs1421805588 1980 dbSNP
rs1428305482 1980 dbSNP
rs1433855884 1980 dbSNP
rs201559947 1980 dbSNP
rs540088541 1980 dbSNP
rs549344209 1980 dbSNP
rs58418721 1980 dbSNP
rs59947705 1980 dbSNP
rs878947856 1980 dbSNP
rs1431009563 1981 dbSNP
rs1430780148 1991 dbSNP
rs1025675116 1998 dbSNP
rs1472048017 2014 dbSNP
rs1249103078 2016 dbSNP
rs970560784 2017 dbSNP
rs1013849887 2023 dbSNP
rs868116803 2024 dbSNP
rs1278606943 2041 dbSNP
rs1370802475 2044 dbSNP
rs538342048 2047 dbSNP
rs1229672213 2050 dbSNP
rs1315332218 2052 dbSNP
rs1055299174 2053 dbSNP
rs1213651012 2061 dbSNP
rs182839571 2062 dbSNP
rs993342836 2067 dbSNP
rs1459151942 2069 dbSNP
rs1205380759 2072 dbSNP
rs1480799464 2082 dbSNP
rs1255356993 2084 dbSNP
rs1468838119 2100 dbSNP
rs1207922959 2101 dbSNP
rs10787530 2102 dbSNP
rs898953952 2112 dbSNP
rs1285244606 2118 dbSNP
rs1373992266 2129 dbSNP
rs773628594 2130 dbSNP
rs1402301239 2131 dbSNP
rs940385395 2135 dbSNP
rs529945274 2150 dbSNP
rs770285817 2156 dbSNP
rs1224143502 2159 dbSNP
rs1005503856 2162 dbSNP
rs566012024 2171 dbSNP
rs889898056 2172 dbSNP
rs547727378 2173 dbSNP
rs1049818262 2179 dbSNP
rs933273196 2188 dbSNP
rs1232991998 2189 dbSNP
rs1350131850 2192 dbSNP
rs1291800339 2195 dbSNP
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rs369255315 2197 dbSNP
rs1272445172 2202 dbSNP
rs974613729 2211 dbSNP
rs1042664442 2215 dbSNP
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rs1333338719 2263 dbSNP
rs1374494127 2271 dbSNP
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rs386747842 2279 dbSNP
rs766389545 2280 dbSNP
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rs981854340 2288 dbSNP
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rs17778547 2303 dbSNP
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rs1319737923 2810 dbSNP
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rs1017283562 3003 dbSNP
rs560318101 3006 dbSNP
rs1227532962 3009 dbSNP
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rs186910344 3017 dbSNP
rs903806224 3026 dbSNP
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rs947458039 5082 dbSNP
rs41293052 5098 dbSNP
rs1183146233 5104 dbSNP
rs546238743 5106 dbSNP
rs530949059 5107 dbSNP
rs1413824063 5112 dbSNP
rs1422912588 5116 dbSNP
rs1478277807 5118 dbSNP
rs754225348 5120 dbSNP
rs117111433 5121 dbSNP
rs920644931 5124 dbSNP
rs753165888 5126 dbSNP
rs1291281066 5137 dbSNP
rs1195696738 5139 dbSNP
rs1379897685 5145 dbSNP
rs964854456 5146 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucgugucugaacgacACUACAa 5'
                         |||||| 
Target 5' --------uuggcgcUGAUGUa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions EF3D-AGO2 , LCL-BAC
Disease MIMAT0004772
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020021. RNA binding protein: AGO2. Condition:EBV B95-8-infected "PAR-CLIP data was present in GSM1020023. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
Experimental Support 3 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BAC-D2
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1133252. RNA binding protein: AGO2. Condition:Untreated ...

- Majoros WH; Lekprasert P; Mukherjee N; et al., 2013, Nature methods.

Article - Majoros WH; Lekprasert P; Mukherjee N; et al.
- Nature methods, 2013
High-throughput sequencing has opened numerous possibilities for the identification of regulatory RNA-binding events. Cross-linking and immunoprecipitation of Argonaute proteins can pinpoint a microRNA (miRNA) target site within tens of bases but leaves the identity of the miRNA unresolved. A flexible computational framework, microMUMMIE, integrates sequence with cross-linking features and reliably identifies the miRNA family involved in each binding event. It considerably outperforms sequence-only approaches and quantifies the prevalence of noncanonical binding modes.
LinkOut: [PMID: 23708386]
CLIP-seq Support 1 for dataset GSM1020021
Method / RBP PAR-CLIP / AGO2
Cell line / Condition EF3D-AGO2 / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000392952.3 | 3UTR | UUGGCGCUGAUGUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM1020023
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000392952.3 | 3UTR | UUGGCGCUGAUGUAGCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM1133252
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC-D2 / Untreated
Location of target site ENST00000392952.3 | 3UTR | UUGGCGCUGAUGUAGCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23708386 / GSE46611
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000392952.3 | 3UTR | UUGGCGCUGAUGUAGCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000392952.3 | 3UTR | UUGGCGCUGAUGUAGCUCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.649 3.0e-4 0.574 1.7e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.817 3.3e-4 0.738 2.0e-3 13 Click to see details
GSE17498 Multiple myeloma 0.288 3.6e-2 0.192 1.2e-1 40 Click to see details
GSE38226 Liver fibrosis -0.371 4.9e-2 -0.318 8.0e-2 21 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.194 2.1e-1 0.456 2.2e-2 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.138 2.6e-1 -0.275 9.2e-2 25 Click to see details
GSE26953 Aortic valvular endothelial cells -0.073 3.7e-1 -0.031 4.4e-1 24 Click to see details
GSE21687 Ependynoma primary tumors 0.039 3.8e-1 0.016 4.5e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells 0.044 4.2e-1 0.179 2.1e-1 23 Click to see details
GSE32688 Pancreatic cancer 0.02 4.6e-1 0.115 2.7e-1 32 Click to see details
GSE19350 CNS germ cell tumors -0.022 4.7e-1 0.285 1.8e-1 12 Click to see details
GSE19350 CNS germ cell tumors -0.022 4.7e-1 0.285 1.8e-1 12 Click to see details
GSE19350 CNS germ cell tumors -0.022 4.7e-1 0.285 1.8e-1 12 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC -0.678 0.05 -0.750 0.03 7 Click to see details
KIRC 0.375 0.06 0.139 0.29 19 Click to see details
STAD -0.737 0.08 -0.700 0.09 5 Click to see details
THCA 0.24 0.1 0.231 0.11 29 Click to see details
LUSC 0.763 0.12 0.800 0.1 4 Click to see details
HNSC -0.421 0.13 -0.367 0.17 9 Click to see details
KIRP 0.37 0.16 0.067 0.43 9 Click to see details
BRCA -0.87 0.16 -0.500 0.33 3 Click to see details
KICH -0.331 0.18 -0.345 0.16 10 Click to see details
PRAD 0.1 0.37 -0.147 0.31 14 Click to see details
LIHC 0.088 0.37 0.142 0.29 17 Click to see details
LIHC 0.088 0.37 0.142 0.29 17 Click to see details
LIHC 0.088 0.37 0.142 0.29 17 Click to see details
LIHC 0.088 0.37 0.142 0.29 17 Click to see details
LIHC 0.088 0.37 0.142 0.29 17 Click to see details
59 hsa-miR-499a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT130131 TXNIP thioredoxin interacting protein 2 2
MIRT133678 ETNK1 ethanolamine kinase 1 2 2
MIRT252103 NAPG NSF attachment protein gamma 2 2
MIRT260160 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT388009 DR1 down-regulator of transcription 1 2 2
MIRT441692 ABLIM1 actin binding LIM protein 1 2 6
MIRT447799 EPC2 enhancer of polycomb homolog 2 2 2
MIRT450657 STYX serine/threonine/tyrosine interacting protein 2 4
MIRT456843 ZNF460 zinc finger protein 460 2 2
MIRT464134 VPS35 VPS35, retromer complex component 2 2
MIRT465101 TSC22D3 TSC22 domain family member 3 2 4
MIRT470051 PTGFRN prostaglandin F2 receptor inhibitor 2 2
MIRT474146 LIMA1 LIM domain and actin binding 1 2 6
MIRT474153 LIFR LIF receptor alpha 2 2
MIRT485327 MYO1D myosin ID 2 2
MIRT496403 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT497280 MAF MAF bZIP transcription factor 2 2
MIRT500970 SPTSSA serine palmitoyltransferase small subunit A 2 2
MIRT501536 POM121C POM121 transmembrane nucleoporin C 2 6
MIRT505174 WDR76 WD repeat domain 76 2 4
MIRT505203 UQCRB ubiquinol-cytochrome c reductase binding protein 2 4
MIRT506745 LIN54 lin-54 DREAM MuvB core complex component 2 4
MIRT506799 KLHL15 kelch like family member 15 2 6
MIRT525718 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 2 2
MIRT530014 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT531457 PROSER2 proline and serine rich 2 2 2
MIRT532272 CD93 CD93 molecule 2 2
MIRT538715 CAPRIN2 caprin family member 2 2 4
MIRT547356 NAT8L N-acetyltransferase 8 like 2 2
MIRT551468 TRIM59 tripartite motif containing 59 2 2
MIRT555444 NT5C3A 5'-nucleotidase, cytosolic IIIA 2 2
MIRT555674 PGAM4 phosphoglycerate mutase family member 4 2 4
MIRT557816 FOXO1 forkhead box O1 2 2
MIRT557853 FIGN fidgetin, microtubule severing factor 2 2
MIRT557880 FEM1B fem-1 homolog B 2 4
MIRT562299 GLO1 glyoxalase I 2 2
MIRT563245 QRFPR pyroglutamylated RFamide peptide receptor 2 2
MIRT565571 SLC7A2 solute carrier family 7 member 2 2 2
MIRT566214 PTMA prothymosin, alpha 2 2
MIRT575544 Map4 microtubule-associated protein 4 2 2
MIRT609316 FXYD6 FXYD domain containing ion transport regulator 6 2 2
MIRT609362 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT611163 BTLA B and T lymphocyte associated 2 4
MIRT611749 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT615019 ELK4 ELK4, ETS transcription factor 2 2
MIRT623317 MAPK1 mitogen-activated protein kinase 1 2 2
MIRT624550 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT633934 DNAH9 dynein axonemal heavy chain 9 2 2
MIRT635691 BMP10 bone morphogenetic protein 10 2 2
MIRT646438 DNAH8 dynein axonemal heavy chain 8 2 2
MIRT651940 UBN1 ubinuclein 1 2 2
MIRT663605 TBC1D22A TBC1 domain family member 22A 2 2
MIRT689759 PRR13 proline rich 13 2 2
MIRT691916 SRXN1 sulfiredoxin 1 2 2
MIRT698678 TEF TEF, PAR bZIP transcription factor 2 2
MIRT700924 PDS5A PDS5 cohesin associated factor A 2 2
MIRT707970 PDE12 phosphodiesterase 12 2 2
MIRT715290 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT722414 RARS2 arginyl-tRNA synthetase 2, mitochondrial 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-499a Erlotinib 176870 NSC718781 approved sensitive Low Osteosarcoma cell line (CD166)
hsa-mir-499a Cisplatin 5460033 NSC119875 approved resistant Low Cervical Cancer cell line (GH329, Hela, CaSki, Siha)
hsa-miR-499a-3p Trametinib 11707110 NSC758246 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (M14) (2uM)
hsa-miR-499a-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-499a-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM47)
hsa-miR-499a-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM36)
hsa-miR-499a-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-499a-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-499a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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