miRTarBase - #MIRT441983


—
pre-miRNA Information
pre-miRNA hsa-mir-6733   
Genomic Coordinates chr1: 43171652 - 43171712
Description Homo sapiens miR-6733 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6733-5p
Sequence 6| UGGGAAAGACAAACUCAGAGUU |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs953882106 3 dbSNP
rs371499741 9 dbSNP
rs778441909 21 dbSNP
rs1348902205 22 dbSNP
Putative Targets

Gene Information
Gene Symbol TSTD2   
Synonyms C9orf97
Description thiosulfate sulfurtransferase like domain containing 2
Transcript NM_139246   
Expression
Putative miRNA Targets on TSTD2
3'UTR of TSTD2
(miRNA target sites are highlighted)		 
>TSTD2|NM_139246|3'UTR
   1 GCAGCACCTTTGGCATTTTCCCAGGCCCTCGGTAAAAGTAGGTTTGGGGTGACTATACAGAGAAAGCATGGCAAGACTGC
  81 AGAAACAGAGAAATCGGGAACTTCAGTTCTGGCCGCTGCCACCGTGGCAGCCGTCTACACTTCACAGCGGGAGGGGAGGA
 161 GTCACGTTGTCTACCACTTACCTGAGACATTCTGATTTGGATGATGCTAGAGCACAGAAAATAGGTGAGCTGCATGGGAT
 241 CCCAAAGCTGCTGAGGGATAGAGCCTGAGCCTGGTGGCCACAGCATATGCCCTTTCTGTTCCATGCAGCTGGGGCTGTTA
 321 GTAGTCATTGCCCTTGTCAGCAGACCTTCTACCCTGGTGGCAAACACATGAAAGCTGTGGCCCTGGGAGTGGCCTCCTAA
 401 AACAAGCCACTTAGGTCATCTGCCATCTACCCTTAACCTCTGTCTCTCGCCTGAGGGGAATCTGCAAGCTGTGCATTGGG
 481 CTTACCTCCTGCTTTTGTAGAAATAACCATCCTTTGGTATACATGGAGGATAGTTCCAGAACGCCTGAGTATACAAAAAC
 561 CCAATGCATACTCAAGTCCCACAGTGGGCCCTACAGAACCCACGTATGTGATAAATCAGCCCTCCATGTACGCAGGTTTC
 641 GCCCCCTGCCAATACTGTATTTTCAACCTGTATGGTTGAAAAAAATCCATATATAAGTGCAGCCATGCAGTTCAAACCCA
 721 TATTGTTCAAGGGTCAACTGTATAGTTTATTGAACAGCCACACCCATTCCTTTACACATGATCTATGGCAGAGTTGAATA
 801 GTTGCAACAGACACTATGTGGCCTGCAAAATCGGAAATTTTTACTGTCTGGCCTTTTACAGAAAAGTTTGCCAGCCCCTG
 881 ATCTAGACCAGCAGCTCATCTGATAGAGGCAGAGGTGGCCTTAAAGATGTGGCCTTCTTCATTTTCTGTTGGTTTGGTTT
 961 CGTTTCTATGAGAGATTTCCTCTGATAGCTCTGCTTTCCCCAGCACTTACTCTCTGAGCTTTTAAATGTTCTCTCTGGGA
1041 GCTTCATATAAGCTCGGTGACATTTGAGCCACAGTTTTTAGATCAGCACCTGGAATACATGACACATTCTTACTGAGGTC
1121 ATCCAGCACTGCCATGGTGGCTGCCCAGTCTTCTGGCCAGTGTGCCAGGCACATGTCCCTGTCACACAGGTTCCAAGAAA
1201 CACATACGCAGCCATGCATAGACCAACAGATTTAATATTATATTGCAGTTTTCAGCGATGCAGAATGCAGCTGCAATTGT
1281 GTTTTAAGGAGAAGCCAAATGGGGATGGTTGTCCCTGCAACATGGTGCCACTCCTGGGCCATGTGCAGCCTCAGTGGACA
1361 CTCTTCCATAGCGCTGAGGCCCTGGCCCCGCCTCCAGTTACCCTGTACTGCCCACTGCCTTACAGTTCAGTGCGCAGGCC
1441 TTCACCTTTTCATCACCAGCCTCTCTGCTCAGTGCTCTGGAGTTCTTGACCTTGTCCTTTATCATGAGATTTGCTGAAAT
1521 CACTAATGAAAATAACTCCCAAAAGCAACAAACAAAAATATTAGTTTAACTGGCACTGTGGTATATTAAAAGGCACAAGG
1601 GCATTGTGGCTTAACACTTTTGCTGGATCCCAAGAGACGCACATGATGTTAAAAAGAGATCTGGCAGCAGTACTAATACT
1681 ACATTTCAGTGTAATCATCTTGGGGTGGTTTGGCCAGGATTTCCCAATTCCTTGATATCTGGAGTTTCTTCACCATTGTC
1761 CGGCATCCTGCGGAGGCTTAATATACAGGCGTAAGGTCAGCAGCAATTTGTCTAATAAGTGATGAGATCAGTAGCTGAAG
1841 TCTCTAAGCTGGGCCATTACTAAATACCATAGCCATGTTGATCTGGAAATTTATCCCTCTAGTGTCTTACCTCACATAAG
1921 CCATTTGCCCACTGTGCAATATAGAAAGGTGTTTTCAAAAGTATTTGGCCGTAGATTTTCACATCCATCATAAGGTTGGC
2001 ATTCAATAAGGAAAAAGTTCTAACTCCAGTATTAAATTGTACATAAATCCCAAATGTTCTTAAAGAACACTCAGGGACAT
2081 GTTTGTTGCCTGGGATTGGTAATGAAAGGTTGGTTTTTGAAACTTGAAATTTCACCATTGGTTTTTTTCCTATCATTTCT
2161 GCATATCCAGCAAAAGGAATCTCATGTTGACTCCTGGCAGAGTTCAGTGGCTTCAGTCTGTCTATCTGTTCTGAGGGGAA
2241 AATTGTGTTCTGGATCCAGTAATCAATTTGGCAACTTTAATCGAGGTTTTCAAAATTCCAAGGAGGGTTAATAAAGAATG
2321 ATAATCAGTTTTATTTGCTAATAGCTAAGACAAATTTGTAATAAAGTGTTTTATAATACTTCAAAAGCAAAAAAAAAAAA
2401 AAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuGAGAC--UC-AAACAGAAAGGGu 5'
            |||||  || | || ||||||| 
Target 5' tcCTCTGATAGCTCTG-CTTTCCCc 3'
 978 - 1001 161.00 -16.04
2 
miRNA  3' uugagacucAAAC--AGAAAGGGu 5'
                   ||||   :|||||| 
Target 5' -gcagcaccTTTGGCATTTTCCCa 3'
 1 - 23 131.00 -12.50
3 
miRNA  3' uuGAGACUCAAACAGAAAGGGu 5'
            | :|| |||  |:|||||: 
Target 5' acCATTG-GTT--TTTTTCCTa 3'
 2134 - 2152 123.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31566691 30 COSMIC
COSN31588679 31 COSMIC
COSN1370506 136 COSMIC
COSN8113364 843 COSMIC
COSN24302851 1212 COSMIC
COSN31596664 1277 COSMIC
COSN6371829 1308 COSMIC
COSN31530892 1577 COSMIC
COSN26678852 1594 COSMIC
COSN31550267 1664 COSMIC
COSN30215671 1930 COSMIC
COSN2300945 2122 COSMIC
COSN16026338 2170 COSMIC
COSN27026839 2259 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs376138156 2 dbSNP
rs1342850064 5 dbSNP
rs1257801324 10 dbSNP
rs373126461 14 dbSNP
rs754770435 17 dbSNP
rs1017922591 20 dbSNP
rs773011567 20 dbSNP
rs1005216824 21 dbSNP
rs769646040 25 dbSNP
rs747831216 30 dbSNP
rs373200620 31 dbSNP
rs1480557541 37 dbSNP
rs754673011 38 dbSNP
rs1334026933 39 dbSNP
rs929495338 40 dbSNP
rs746631445 46 dbSNP
rs997047081 48 dbSNP
rs753535910 50 dbSNP
rs1469880674 51 dbSNP
rs964541989 53 dbSNP
rs777367220 58 dbSNP
rs1406912479 60 dbSNP
rs766188047 65 dbSNP
rs1008365157 68 dbSNP
rs1353873521 70 dbSNP
rs1349490758 76 dbSNP
rs755902483 78 dbSNP
rs1458952106 79 dbSNP
rs374405622 90 dbSNP
rs1019870902 96 dbSNP
rs1011196296 104 dbSNP
rs752400533 105 dbSNP
rs1347644771 108 dbSNP
rs1163906106 109 dbSNP
rs529182749 114 dbSNP
rs1307487474 115 dbSNP
rs371324824 123 dbSNP
rs893087338 124 dbSNP
rs1484746909 127 dbSNP
rs1414173573 132 dbSNP
rs991484171 133 dbSNP
rs1472166698 148 dbSNP
rs1055622145 149 dbSNP
rs1184623356 157 dbSNP
rs937211713 158 dbSNP
rs907005317 163 dbSNP
rs1251335629 165 dbSNP
rs1373506719 167 dbSNP
rs1192015310 169 dbSNP
rs1312887566 171 dbSNP
rs1360592752 172 dbSNP
rs1428207705 206 dbSNP
rs1268825649 215 dbSNP
rs925895683 220 dbSNP
rs1229538204 221 dbSNP
rs1300492092 222 dbSNP
rs1046487264 224 dbSNP
rs1279408273 229 dbSNP
rs1444416582 245 dbSNP
rs138279350 257 dbSNP
rs908542200 258 dbSNP
rs967627017 258 dbSNP
rs1190194697 267 dbSNP
rs767130662 287 dbSNP
rs1172720394 290 dbSNP
rs982820132 291 dbSNP
rs963824242 298 dbSNP
rs3802472 300 dbSNP
rs1005247965 302 dbSNP
rs188311404 304 dbSNP
rs1388870197 308 dbSNP
rs920198988 315 dbSNP
rs552485017 321 dbSNP
rs1028337135 323 dbSNP
rs1234198842 330 dbSNP
rs1347243763 334 dbSNP
rs993741239 334 dbSNP
rs975639064 345 dbSNP
rs897991461 351 dbSNP
rs1283830772 361 dbSNP
rs1330021720 368 dbSNP
rs3824494 375 dbSNP
rs1020168977 379 dbSNP
rs1468009288 393 dbSNP
rs112180181 415 dbSNP
rs1248339854 424 dbSNP
rs967574433 425 dbSNP
rs1019986032 430 dbSNP
rs1011223776 432 dbSNP
rs1458480835 433 dbSNP
rs936030513 435 dbSNP
rs892783776 438 dbSNP
rs1034247151 439 dbSNP
rs925946195 444 dbSNP
rs763312814 448 dbSNP
rs183864718 449 dbSNP
rs945944510 456 dbSNP
rs528939406 457 dbSNP
rs561822554 458 dbSNP
rs573514953 475 dbSNP
rs887218917 481 dbSNP
rs540024551 486 dbSNP
rs976623600 491 dbSNP
rs762245595 500 dbSNP
rs777032466 515 dbSNP
rs911004388 525 dbSNP
rs983844495 529 dbSNP
rs952377049 542 dbSNP
rs931321609 543 dbSNP
rs1435949864 545 dbSNP
rs1423391315 546 dbSNP
rs1251908433 549 dbSNP
rs573092476 559 dbSNP
rs1185321399 561 dbSNP
rs558070348 564 dbSNP
rs1164133821 568 dbSNP
rs942909005 568 dbSNP
rs1024975614 570 dbSNP
rs1408709105 575 dbSNP
rs1250420428 582 dbSNP
rs1351156458 584 dbSNP
rs546149669 585 dbSNP
rs1464678120 586 dbSNP
rs1264158736 603 dbSNP
rs1291701342 604 dbSNP
rs1340027460 605 dbSNP
rs1245264035 622 dbSNP
rs987411809 626 dbSNP
rs1235963830 631 dbSNP
rs1310073576 632 dbSNP
rs894632931 634 dbSNP
rs1300219523 639 dbSNP
rs967556225 644 dbSNP
rs58933803 652 dbSNP
rs989832930 653 dbSNP
rs1000211480 655 dbSNP
rs1366771776 656 dbSNP
rs779938166 663 dbSNP
rs1188757934 668 dbSNP
rs1318410292 682 dbSNP
rs1041757071 684 dbSNP
rs1474740882 685 dbSNP
rs1371667680 686 dbSNP
rs946038728 686 dbSNP
rs957046987 687 dbSNP
rs1040971082 689 dbSNP
rs1401839118 689 dbSNP
rs1314662260 692 dbSNP
rs557116849 693 dbSNP
rs1304352622 700 dbSNP
rs535851949 703 dbSNP
rs1001460427 705 dbSNP
rs1175681020 708 dbSNP
rs971759133 709 dbSNP
rs140717810 714 dbSNP
rs1005147068 717 dbSNP
rs749247995 719 dbSNP
rs972464689 720 dbSNP
rs970780032 724 dbSNP
rs146891886 730 dbSNP
rs993009855 733 dbSNP
rs1391341785 739 dbSNP
rs958881016 741 dbSNP
rs1034438795 742 dbSNP
rs1047192172 752 dbSNP
rs1202517598 761 dbSNP
rs1000242650 762 dbSNP
rs1482512078 763 dbSNP
rs1255005071 766 dbSNP
rs1205470740 778 dbSNP
rs1320961250 780 dbSNP
rs995558720 781 dbSNP
rs1438581104 784 dbSNP
rs1020771708 791 dbSNP
rs1294781162 797 dbSNP
rs1312288241 799 dbSNP
rs534871865 805 dbSNP
rs1327976627 812 dbSNP
rs79375690 817 dbSNP
rs1249033015 827 dbSNP
rs1041002495 832 dbSNP
rs1192287545 833 dbSNP
rs41274252 839 dbSNP
rs1433877015 844 dbSNP
rs747910437 845 dbSNP
rs1394045677 846 dbSNP
rs531145818 847 dbSNP
rs889632211 860 dbSNP
rs1456906711 866 dbSNP
rs1378198172 867 dbSNP
rs1302441463 868 dbSNP
rs570335240 869 dbSNP
rs546277807 878 dbSNP
rs1372702871 883 dbSNP
rs1166792640 885 dbSNP
rs1388024602 891 dbSNP
rs561607179 908 dbSNP
rs1349567865 919 dbSNP
rs1228590644 925 dbSNP
rs946234728 930 dbSNP
rs1331690361 936 dbSNP
rs913372564 937 dbSNP
rs1422395745 940 dbSNP
rs1265377899 941 dbSNP
rs1255905678 956 dbSNP
rs143893955 961 dbSNP
rs562750191 962 dbSNP
rs972879874 966 dbSNP
rs41306698 968 dbSNP
rs1183187767 970 dbSNP
rs140837838 976 dbSNP
rs1459681044 982 dbSNP
rs980209751 983 dbSNP
rs546754145 986 dbSNP
rs575627465 1002 dbSNP
rs1459378345 1012 dbSNP
rs1356496304 1013 dbSNP
rs1024661507 1015 dbSNP
rs958911674 1016 dbSNP
rs1339591838 1017 dbSNP
rs1289870920 1024 dbSNP
rs1307426594 1026 dbSNP
rs1004774570 1027 dbSNP
rs1227018855 1028 dbSNP
rs1312448101 1037 dbSNP
rs1322891495 1038 dbSNP
rs528276309 1048 dbSNP
rs1034564761 1049 dbSNP
rs978978795 1055 dbSNP
rs751095951 1056 dbSNP
rs564323219 1064 dbSNP
rs969279514 1068 dbSNP
rs1020382599 1069 dbSNP
rs1411503545 1070 dbSNP
rs377701254 1073 dbSNP
rs901176916 1083 dbSNP
rs1409236913 1084 dbSNP
rs1414213551 1089 dbSNP
rs1425538454 1098 dbSNP
rs41316964 1100 dbSNP
rs1369834848 1106 dbSNP
rs1429837509 1108 dbSNP
rs1309257970 1109 dbSNP
rs1165442140 1110 dbSNP
rs1446789943 1113 dbSNP
rs1302678524 1117 dbSNP
rs765740941 1117 dbSNP
rs1402575772 1120 dbSNP
rs77800349 1122 dbSNP
rs1368451836 1124 dbSNP
rs994668786 1143 dbSNP
rs1160358106 1150 dbSNP
rs889746689 1156 dbSNP
rs1296052872 1165 dbSNP
rs898614206 1169 dbSNP
rs1341999680 1174 dbSNP
rs14066 1175 dbSNP
rs1276860758 1185 dbSNP
rs750949440 1189 dbSNP
rs1181039859 1193 dbSNP
rs1209653658 1205 dbSNP
rs1451635673 1207 dbSNP
rs1484132535 1208 dbSNP
rs541832051 1208 dbSNP
rs931189578 1218 dbSNP
rs574809323 1233 dbSNP
rs1268845463 1235 dbSNP
rs150926420 1240 dbSNP
rs1036799190 1256 dbSNP
rs949114576 1263 dbSNP
rs1450648092 1268 dbSNP
rs1318940043 1269 dbSNP
rs891107101 1272 dbSNP
rs557511252 1276 dbSNP
rs937662439 1285 dbSNP
rs1342990376 1291 dbSNP
rs927580601 1291 dbSNP
rs577010897 1295 dbSNP
rs558685739 1298 dbSNP
rs979396114 1300 dbSNP
rs946269484 1302 dbSNP
rs968934473 1306 dbSNP
rs1465325722 1308 dbSNP
rs913405587 1309 dbSNP
rs537250805 1316 dbSNP
rs1477410996 1323 dbSNP
rs1473424709 1325 dbSNP
rs1054592380 1326 dbSNP
rs1186629958 1328 dbSNP
rs376999232 1330 dbSNP
rs1258246885 1331 dbSNP
rs1204315134 1333 dbSNP
rs1329791911 1334 dbSNP
rs1464501018 1342 dbSNP
rs1266428021 1346 dbSNP
rs1210846695 1354 dbSNP
rs1351732113 1356 dbSNP
rs988920422 1358 dbSNP
rs927064749 1359 dbSNP
rs1342727967 1360 dbSNP
rs979852475 1362 dbSNP
rs142575924 1363 dbSNP
rs1327818573 1365 dbSNP
rs1387312215 1368 dbSNP
rs1441491625 1368 dbSNP
rs535091350 1372 dbSNP
rs1210288961 1373 dbSNP
rs1402056504 1380 dbSNP
rs1287658909 1381 dbSNP
rs1326862513 1382 dbSNP
rs757888514 1384 dbSNP
rs1162417492 1388 dbSNP
rs568076284 1389 dbSNP
rs971482785 1390 dbSNP
rs750950348 1394 dbSNP
rs1397465186 1395 dbSNP
rs1471434397 1397 dbSNP
rs983369293 1401 dbSNP
rs1412202152 1403 dbSNP
rs1019709063 1405 dbSNP
rs1160601868 1407 dbSNP
rs1389286133 1415 dbSNP
rs779217770 1419 dbSNP
rs756641195 1433 dbSNP
rs73552531 1434 dbSNP
rs973259739 1436 dbSNP
rs751027063 1451 dbSNP
rs1248519506 1459 dbSNP
rs191370083 1468 dbSNP
rs1351277302 1476 dbSNP
rs1230062642 1484 dbSNP
rs995805167 1485 dbSNP
rs1463329601 1486 dbSNP
rs896987033 1487 dbSNP
rs1037236221 1488 dbSNP
rs370250180 1488 dbSNP
rs1291876648 1490 dbSNP
rs1013410557 1492 dbSNP
rs896265827 1504 dbSNP
rs1463967397 1508 dbSNP
rs1252109103 1514 dbSNP
rs762701432 1515 dbSNP
rs1184511638 1519 dbSNP
rs1367058738 1522 dbSNP
rs1472643844 1523 dbSNP
rs1345966586 1525 dbSNP
rs964520084 1527 dbSNP
rs1164372678 1536 dbSNP
rs1054790655 1538 dbSNP
rs1018795764 1550 dbSNP
rs1307483138 1557 dbSNP
rs1006948835 1558 dbSNP
rs1043317468 1562 dbSNP
rs1332003853 1564 dbSNP
rs891130366 1564 dbSNP
rs1339680510 1566 dbSNP
rs1245199840 1570 dbSNP
rs1029625732 1573 dbSNP
rs73552526 1583 dbSNP
rs892082026 1596 dbSNP
rs989424399 1598 dbSNP
rs186752404 1609 dbSNP
rs1274730925 1615 dbSNP
rs1298934451 1616 dbSNP
rs1483857454 1617 dbSNP
rs965517396 1622 dbSNP
rs1437907335 1629 dbSNP
rs912679775 1638 dbSNP
rs1054622988 1639 dbSNP
rs1188607120 1640 dbSNP
rs1318071326 1642 dbSNP
rs985513122 1643 dbSNP
rs1168082975 1646 dbSNP
rs1390841445 1647 dbSNP
rs1463548105 1650 dbSNP
rs1171070007 1672 dbSNP
rs1401687927 1672 dbSNP
rs764422064 1673 dbSNP
rs117342936 1676 dbSNP
rs73656837 1677 dbSNP
rs1477387272 1679 dbSNP
rs572076572 1681 dbSNP
rs1390264299 1683 dbSNP
rs949790420 1689 dbSNP
rs916982034 1690 dbSNP
rs1297758483 1692 dbSNP
rs961624331 1697 dbSNP
rs182153610 1699 dbSNP
rs928940909 1707 dbSNP
rs1230349087 1710 dbSNP
rs1255061693 1718 dbSNP
rs1345265827 1727 dbSNP
rs920532877 1734 dbSNP
rs1210518816 1735 dbSNP
rs1265351591 1738 dbSNP
rs1463972828 1749 dbSNP
rs1188511819 1755 dbSNP
rs1015506878 1760 dbSNP
rs1013402834 1761 dbSNP
rs1442561579 1762 dbSNP
rs1280939600 1769 dbSNP
rs772097561 1771 dbSNP
rs1377344654 1772 dbSNP
rs542133612 1777 dbSNP
rs964917421 1783 dbSNP
rs1178378813 1784 dbSNP
rs1386160832 1784 dbSNP
rs1017405168 1790 dbSNP
rs745942260 1791 dbSNP
rs955524294 1799 dbSNP
rs1001871830 1813 dbSNP
rs903537468 1815 dbSNP
rs1029695108 1825 dbSNP
rs1010222594 1829 dbSNP
rs891779203 1831 dbSNP
rs1033237126 1849 dbSNP
rs148420423 1860 dbSNP
rs1342671920 1863 dbSNP
rs192473890 1867 dbSNP
rs1487130451 1878 dbSNP
rs752370017 1883 dbSNP
rs1208211643 1886 dbSNP
rs1266725445 1888 dbSNP
rs764920181 1890 dbSNP
rs1434037055 1894 dbSNP
rs892067097 1895 dbSNP
rs759342503 1897 dbSNP
rs1433734220 1902 dbSNP
rs769681777 1906 dbSNP
rs1456300005 1910 dbSNP
rs950255109 1913 dbSNP
rs895593244 1918 dbSNP
rs1427303863 1929 dbSNP
rs1390854733 1930 dbSNP
rs376273233 1939 dbSNP
rs1047492894 1940 dbSNP
rs1389452882 1958 dbSNP
rs1286076273 1965 dbSNP
rs576878327 1966 dbSNP
rs928972004 1970 dbSNP
rs920231794 1971 dbSNP
rs1228230421 1974 dbSNP
rs1308157700 1980 dbSNP
rs1319298773 1994 dbSNP
rs558647249 2005 dbSNP
rs1265327535 2014 dbSNP
rs1473632476 2017 dbSNP
rs912711140 2017 dbSNP
rs188758798 2022 dbSNP
rs1482847766 2024 dbSNP
rs1185618089 2026 dbSNP
rs754244623 2026 dbSNP
rs144553031 2028 dbSNP
rs554943467 2031 dbSNP
rs974518542 2039 dbSNP
rs764622100 2048 dbSNP
rs910458974 2051 dbSNP
rs987356798 2059 dbSNP
rs1272877060 2060 dbSNP
rs1015941627 2064 dbSNP
rs1410024858 2064 dbSNP
rs1376015851 2068 dbSNP
rs1226928532 2069 dbSNP
rs1358845256 2071 dbSNP
rs954689406 2073 dbSNP
rs1248344136 2078 dbSNP
rs144362839 2079 dbSNP
rs988827104 2083 dbSNP
rs1205516790 2089 dbSNP
rs780910051 2093 dbSNP
rs115493726 2094 dbSNP
rs1001984785 2110 dbSNP
rs1032934217 2111 dbSNP
rs1000601603 2118 dbSNP
rs970369132 2124 dbSNP
rs1446367969 2125 dbSNP
rs1023623324 2130 dbSNP
rs1407397035 2134 dbSNP
rs1353445397 2138 dbSNP
rs1014445395 2141 dbSNP
rs1009675400 2149 dbSNP
rs9539 2152 dbSNP
rs878986152 2156 dbSNP
rs1163905656 2157 dbSNP
rs1047527906 2165 dbSNP
rs41274250 2169 dbSNP
rs898836472 2175 dbSNP
rs1037412201 2176 dbSNP
rs1295981418 2176 dbSNP
rs1364586172 2183 dbSNP
rs1049953006 2193 dbSNP
rs1275400463 2208 dbSNP
rs1482078392 2216 dbSNP
rs766326297 2218 dbSNP
rs1209247070 2224 dbSNP
rs1263494699 2224 dbSNP
rs943023109 2224 dbSNP
rs1491274933 2227 dbSNP
rs1475461271 2228 dbSNP
rs776079138 2228 dbSNP
rs920026595 2228 dbSNP
rs1413522089 2229 dbSNP
rs760542829 2235 dbSNP
rs974158269 2237 dbSNP
rs1407324900 2257 dbSNP
rs1471137197 2259 dbSNP
rs573076773 2269 dbSNP
rs1319135990 2274 dbSNP
rs1222483805 2280 dbSNP
rs1453833796 2282 dbSNP
rs940036214 2283 dbSNP
rs908503425 2293 dbSNP
rs1330268142 2298 dbSNP
rs1284109082 2305 dbSNP
rs992047810 2307 dbSNP
rs1267486838 2308 dbSNP
rs1447504844 2311 dbSNP
rs771997181 2319 dbSNP
rs779743757 2320 dbSNP
rs1477379196 2321 dbSNP
rs1199733542 2326 dbSNP
rs1430887360 2328 dbSNP
rs774453736 2328 dbSNP
rs1157378858 2331 dbSNP
rs1384958269 2336 dbSNP
rs910499552 2342 dbSNP
rs1401764756 2344 dbSNP
rs1293591581 2351 dbSNP
rs1438069658 2352 dbSNP
rs1348232570 2355 dbSNP
rs1435802631 2363 dbSNP
rs1348027243 2366 dbSNP
rs1804557 2368 dbSNP
rs1033555249 2369 dbSNP
rs1226394231 2372 dbSNP
rs1287488269 2373 dbSNP
rs980596968 2376 dbSNP
rs570536535 2383 dbSNP
rs933186435 2384 dbSNP
rs757885854 2386 dbSNP
rs913703547 2389 dbSNP
rs988858127 2390 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uugagacucaAAC--AGAAAGGGu 5'
                    |||   :|||||| 
Target 5' ----------UUGGCAUUUUCCCa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000341170.4 | 3UTR | UUGGCAUUUUCCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000341170.4 | 3UTR | UUGGCAUUUUCCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
161 hsa-miR-6733-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075325 SF3B3 splicing factor 3b subunit 3 2 4
MIRT082764 EPN1 epsin 1 2 4
MIRT119868 NRBP1 nuclear receptor binding protein 1 2 2
MIRT124577 PRRC2B proline rich coiled-coil 2B 2 2
MIRT126718 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT128925 KMT2A lysine methyltransferase 2A 2 2
MIRT135191 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT145630 LASP1 LIM and SH3 protein 1 2 2
MIRT175518 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT188406 ATXN7L3B ataxin 7 like 3B 2 2
MIRT192486 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT208383 SLC25A36 solute carrier family 25 member 36 2 2
MIRT216690 F2R coagulation factor II thrombin receptor 2 2
MIRT235839 FAM217B family with sequence similarity 217 member B 2 2
MIRT257000 RGMB repulsive guidance molecule family member b 2 2
MIRT266594 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT273614 SP1 Sp1 transcription factor 2 2
MIRT276567 AKAP11 A-kinase anchoring protein 11 2 2
MIRT285544 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT291540 LRRC8B leucine rich repeat containing 8 VRAC subunit B 2 2
MIRT317159 E2F3 E2F transcription factor 3 2 4
MIRT340688 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT366934 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT376193 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT441983 TSTD2 thiosulfate sulfurtransferase like domain containing 2 2 2
MIRT442059 POU3F2 POU class 3 homeobox 2 2 6
MIRT443190 PDHA1 pyruvate dehydrogenase E1 alpha 1 subunit 2 2
MIRT445133 CMTM4 CKLF like MARVEL transmembrane domain containing 4 2 2
MIRT445881 WBP1L WW domain binding protein 1 like 2 2
MIRT449359 DPP6 dipeptidyl peptidase like 6 2 2
MIRT451399 FARSA phenylalanyl-tRNA synthetase alpha subunit 2 2
MIRT451802 CDCA3 cell division cycle associated 3 2 4
MIRT452295 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT452494 HMGXB3 HMG-box containing 3 2 2
MIRT453354 ZNF3 zinc finger protein 3 2 2
MIRT453375 CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 2 2
MIRT453719 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 2 2
MIRT453839 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT454009 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT454371 PIGS phosphatidylinositol glycan anchor biosynthesis class S 2 2
MIRT454729 ARSK arylsulfatase family member K 2 2
MIRT455227 KIAA2013 KIAA2013 2 2
MIRT455866 SLC35C2 solute carrier family 35 member C2 2 2
MIRT456386 KLHL12 kelch like family member 12 2 2
MIRT457017 ACADSB acyl-CoA dehydrogenase, short/branched chain 2 2
MIRT457048 NEGR1 neuronal growth regulator 1 2 2
MIRT457402 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT457808 KLHL25 kelch like family member 25 2 2
MIRT458361 C3orf80 chromosome 3 open reading frame 80 2 2
MIRT458678 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT459629 GABARAP GABA type A receptor-associated protein 2 2
MIRT460955 MUL1 mitochondrial E3 ubiquitin protein ligase 1 2 2
MIRT462241 PRSS16 protease, serine 16 2 2
MIRT462472 FIZ1 FLT3 interacting zinc finger 1 2 2
MIRT462572 STS steroid sulfatase 2 2
MIRT462931 ZNF827 zinc finger protein 827 2 2
MIRT463442 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT464129 VPS35 VPS35, retromer complex component 2 2
MIRT464688 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465653 TNPO2 transportin 2 2 2
MIRT465951 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466032 TMEM189 transmembrane protein 189 2 2
MIRT466577 TBC1D2B TBC1 domain family member 2B 2 2
MIRT467506 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 2
MIRT467786 SLC2A14 solute carrier family 2 member 14 2 2
MIRT468104 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT468292 SFT2D2 SFT2 domain containing 2 2 2
MIRT469004 RNF41 ring finger protein 41 2 2
MIRT469753 RAB2B RAB2B, member RAS oncogene family 2 2
MIRT473205 MINK1 misshapen like kinase 1 2 4
MIRT473314 MEX3A mex-3 RNA binding family member A 2 2
MIRT473549 MAVS mitochondrial antiviral signaling protein 2 2
MIRT474269 LATS2 large tumor suppressor kinase 2 2 2
MIRT475111 IPPK inositol-pentakisphosphate 2-kinase 2 2
MIRT475436 HYOU1 hypoxia up-regulated 1 2 2
MIRT475751 HDLBP high density lipoprotein binding protein 2 2
MIRT475972 GTPBP2 GTP binding protein 2 2 2
MIRT476480 GATAD2A GATA zinc finger domain containing 2A 2 2
MIRT476595 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT476684 FURIN furin, paired basic amino acid cleaving enzyme 2 2
MIRT477261 ERGIC2 ERGIC and golgi 2 2 2
MIRT477647 EFNA1 ephrin A1 2 2
MIRT477790 E2F2 E2F transcription factor 2 2 2
MIRT477871 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT478012 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 2 2
MIRT479558 CDC5L cell division cycle 5 like 2 4
MIRT480420 C17orf85 nuclear cap binding subunit 3 2 2
MIRT480642 BSCL2 BSCL2, seipin lipid droplet biogenesis associated 2 2
MIRT480778 BMP2 bone morphogenetic protein 2 2 2
MIRT481554 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT481689 AR androgen receptor 2 2
MIRT481836 AP1S1 adaptor related protein complex 1 sigma 1 subunit 2 2
MIRT483138 FOXC1 forkhead box C1 2 2
MIRT483919 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 2
MIRT484202 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT484433 RAB7A RAB7A, member RAS oncogene family 2 4
MIRT485544 GP5 glycoprotein V platelet 2 2
MIRT486558 SLC38A4 solute carrier family 38 member 4 2 2
MIRT486727 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B 2 4
MIRT490490 GLRA3 glycine receptor alpha 3 2 2
MIRT490682 SSTR1 somatostatin receptor 1 2 2
MIRT490792 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491060 ACVR1B activin A receptor type 1B 2 4
MIRT492614 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT492768 PDGFB platelet derived growth factor subunit B 2 2
MIRT493988 EHD1 EH domain containing 1 2 2
MIRT494510 BDNF-AS BDNF antisense RNA 2 2
MIRT494755 AP3M2 adaptor related protein complex 3 mu 2 subunit 2 2
MIRT499802 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT501336 RNF44 ring finger protein 44 2 4
MIRT509490 CENPA centromere protein A 2 2
MIRT509643 ZNF354B zinc finger protein 354B 2 10
MIRT510147 PDGFRA platelet derived growth factor receptor alpha 2 4
MIRT510567 UNG uracil DNA glycosylase 2 6
MIRT525087 FRK fyn related Src family tyrosine kinase 2 2
MIRT528452 NXT2 nuclear transport factor 2 like export factor 2 2 4
MIRT531970 C12orf49 chromosome 12 open reading frame 49 2 2
MIRT532084 RTTN rotatin 2 2
MIRT532756 LDHD lactate dehydrogenase D 2 2
MIRT535072 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 2
MIRT535637 NPEPPS aminopeptidase puromycin sensitive 2 2
MIRT545410 EIF4A3 eukaryotic translation initiation factor 4A3 2 4
MIRT545911 ZFP91 ZFP91 zinc finger protein 2 4
MIRT548007 GRB2 growth factor receptor bound protein 2 2 4
MIRT548545 DR1 down-regulator of transcription 1 2 2
MIRT550075 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT553730 TBRG1 transforming growth factor beta regulator 1 2 2
MIRT557569 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits 2 2
MIRT558025 EXT1 exostosin glycosyltransferase 1 2 2
MIRT558139 ENC1 ectodermal-neural cortex 1 2 2
MIRT560173 COA1 cytochrome c oxidase assembly factor 1 homolog 2 2
MIRT561700 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT565101 UBE3C ubiquitin protein ligase E3C 2 2
MIRT565739 SESN3 sestrin 3 2 2
MIRT566669 NACC2 NACC family member 2 2 2
MIRT567040 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT569627 ZNF746 zinc finger protein 746 2 2
MIRT570530 RPH3A rabphilin 3A 2 2
MIRT570939 CPE carboxypeptidase E 2 2
MIRT574774 FGF2 fibroblast growth factor 2 2 2
MIRT620120 LACC1 laccase domain containing 1 2 2
MIRT624338 CISD1 CDGSH iron sulfur domain 1 2 2
MIRT625434 RMDN1 regulator of microtubule dynamics 1 2 2
MIRT640528 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT646916 TRIM14 tripartite motif containing 14 2 2
MIRT656298 METTL1 methyltransferase like 1 2 2
MIRT660192 BMPR1A bone morphogenetic protein receptor type 1A 2 2
MIRT661360 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT667769 KCTD11 potassium channel tetramerization domain containing 11 2 2
MIRT683187 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 2
MIRT685843 ANGEL1 angel homolog 1 2 2
MIRT688553 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT689424 CYB561 cytochrome b561 2 2
MIRT698505 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT701232 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT702506 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 2 2
MIRT706488 SEPT6 septin 6 2 2
MIRT713774 ZNF460 zinc finger protein 460 2 2
MIRT716991 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT722644 MPEG1 macrophage expressed 1 2 2
MIRT725254 PARVB parvin beta 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-6733 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-mir-6733 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-6733-5p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-6733-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-6733-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-6733-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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