miRTarBase - #MIRT442047


—
pre-miRNA Information
pre-miRNA hsa-mir-628   
Genomic Coordinates chr15: 55372940 - 55373034
Synonyms MIRN628, hsa-mir-628, MIR628
Description Homo sapiens miR-628 stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-628-3p
Sequence 61| UCUAGUAAGAGUGGCAGUCGA |81
Evidence Experimental
Experiments Microarray
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 7 15 - 55372968 29233923 MiREDiBase
A-to-I 8 15 - 55372967 29233923 MiREDiBase
C-to-U 19 15 - 55372956 20591823 MiREDiBase
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN26969715 1 COSMIC
COSN30123186 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1410255602 2 dbSNP
rs1401315366 3 dbSNP
rs1322836365 4 dbSNP
rs1158103480 8 dbSNP
rs1216611749 11 dbSNP
rs749619551 13 dbSNP
rs778157225 18 dbSNP
rs756600789 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol LRAT   
Synonyms LCA14
Description lecithin retinol acyltransferase
Transcript NM_004744   
Expression
Putative miRNA Targets on LRAT
3'UTR of LRAT
(miRNA target sites are highlighted)		 
>LRAT|NM_004744|3'UTR
   1 CTTCATACCCCCATGTCAGTGTGTGTATTCTGTATGTAAATATGTTTATATTTATAGAGCATCAATCAATATAAGCATTA
  81 TTGAGAAAAATGTGACCCGTAACACTGTGTTCTGGATAAAAATGTGATTAGGAATCACGCAAAGTGCTTACTGTGTAAGC
 161 CCAAGAACAAAGGCTTTCTGAATCTTCTCAGGCAGTTCAGATTTAAAGCACCATCCAAACCTTGGAAATACGACAGGGTG
 241 TGGTAGAATTCAGCAATATGAGAAAACCAGCCCCTAAAATGATAGCCACAAGAGATTAATTGTGTTTTTTTTTCTCCTGT
 321 AATCCTTGTACTGTTCGGCTGAATTTGAAGATTGGAAGACTTATATTGAGACCAGTAACTTTACTGTAAATTTACTTTGT
 401 TTCATTGAAAAAACAAATTGATAAACATATTAAACTGGAAGAATTTTCTTTATTCAAATGAAAACATGTTTGATGACTGG
 481 TCAAAAAATAAGCTCATAATCTATTTTTTTCATGTAGTATATAAGTCAAGAATGTTTTATTGTCATTATGTGAAACCAAT
 561 ATTGGCAAATAGTACTTTAATGATGAAGTAAATGACCAGAAATTATAGAAATCTGTGTTTTCCTGTAAAAATAGCACTAT
 641 AGTATCACTTGAACAATTTGATTTGGCTTTACTTACTAGGAAGCCTGGAATTCATTATTTTTTTCCTTTTATGTGCCACT
 721 GTGGCTACTTTAAATCACTCTGAGAGGTAAATGGATATAGGATTGAAGTTATGTGGGTATTTGGCATGTGTGTGTGAAAT
 801 AAATATGTAGATAGTCACATATACACAGACTGAGAGATAAATTGTTCTTGATTGCTTTATTATCATCATACTAGTGTGTT
 881 CATTATAGAGTATCTGTAGAGGTGAATGTAAAAGTAAGTCCAATCTATTTTCTTATGTCATTGAATTTGTAGTGTTAACT
 961 TGCATATATGTTATTGGATGGGTTGTCTTTTAAAGCATTTACTAATGTACTCTGAAATTTTTAAAAGCCTTCAGATTTGT
1041 TTTCTAGTCACTTTTTTCCATATCATTTCTAATTATAGTTTATATCCTTAAAAGAAGGATGCCACAGTAGTATGTAAAAC
1121 CCAAACAAGTAGAACCCAAGCAAATAAAATTATTTAAAATAATTTTAAAGTGGCTTAGTACTGCCAGTCATGTAAATTGA
1201 TTCTGCTGAGGGTCTTATAAGAATTGAGATATAACAATGGTAAAACAAGCATTCAAGCACTTTTACAAAATTACCAAATT
1281 CTTAAAATGAAGCCACAGCTAGACTTGCATTTCAGGTATTAAAATTGCTTTCTTAACTGTCAAGAATCACAAAATAACAA
1361 ATCATATTATGAGTGAATATGGGGAGGGCGGGGCCAATCAGTCAATGATAATCTGAACAAATTTTAAGAGCAGATTTTAG
1441 ATTAATAATGTTTTATCACCACTAATTTGCCCACAACAAACTCAGTATTTAATTTTTCAAATTAAATATTAAATTATTTA
1521 AGTATTTTAAATAATTAAAACATTAAATGGCAACACCATAGAATATAGGTGTTCTCTGGACCTATTCTAACCACTTAAAA
1601 TTATCTTAAGTATGCATACATAAAAGCAACCACTATGAGAACTACCGTGTTAGTGGTTTTTCACTTACTGTATATTACCC
1681 TTGTAGGAATAGTTTAAGGAAATTCATTTCTTAAAAATATAGTGTCCTCAAATAATTAATTTTTTTGCAAACTTTAGTTA
1761 TTACAGGCAGCAAAAACCACTGTCTGAAACTAAATCTGTGTTCAAAGATGAAGACCCCTCATTAAAAGCCAAGGACGTTC
1841 TTAAGATTGGAACTGACATAATTAGTCTTGACTTACTTCATTAAAGCAAGATTCAATTCCTTGTTCATTTGAGTGTTCAT
1921 TATATGCCAGGCATTGACCAGTTGCAATTTTATGGTCCAGAATTAATATTATTATTCGTAAACTAGCTATAATAGAGTAT
2001 ATACAGTGCTGTGGGAATACAGGGGAAGAAGCAATTAAATCTGCTAGAAGGGTAAGAGAAATCTGTATGCAGGAGGCAAT
2081 GCTAGCATTAAGCCAAGAAATAGTGTGAGGTGATCTTATCACACTGATGTGTTCAACTGTTTATGGGAAAAGGAAACTAG
2161 GATGGTTTTATTTGTGAAATGTTCTACAACGCTAGAACTGTTGAACTTCTTGGGAGAAAAGGAGAATCTTTGTTTTGTTG
2241 TGCTGAGTTTGATTAGTTGCTTAACCAAGTAGAAAGAAAAGCACATCTTCCTGATCACAGTTATAAAAGAAACCCTGAGG
2321 CCGGGCGCGGTGGCTCAAGCCTGTAACCCCAGCACTTTGGGAGGCCAAGGAGGGAGGATCACAAGGTCAGGAGATCGAGA
2401 CCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCCGGCGCCTGTAGTC
2481 CCAGCTACTCATGAGGTTGAGGCAGGAGAATGGCGTGAACCGAGGAGGCGGAGCTTGCAGTGAGTGGAAATTGCGCCACT
2561 GCACTCCAGCCTGGGCAACAAAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAACC
2641 CTGAGCCATTAATGTGTCTCGTAACTTGAGGAAGTTCATGAATTCTCTGGGCTTCATCCATTAAGATTCATCCTTATGCT
2721 CCTGCAAGTTTCTTATATTTATGTATTTCTATTCTGATTTCTGAAATGATAACCTAGTAGTGTCTGATGAAGTTTTTTCA
2801 TGCTTATTTTATTCTTTGTCACAGATGAAAGAAGAATAGGACTAATTGGGGCTAAGATGAATTAATGTAAGTGTCAGATA
2881 CTAGGCAGGTGTTAGGGATGAAATGATGAATGAGGCATGGACCTGTTCCTCAGAGTTTATGGCCCAGTAGACATAATTGT
2961 ATTAGGACTTTCTGCAGTTGACATTTGCATAAAGCTGACTGACTGAAGGAACAGAAAGTGAGACAGACAGATATGACCAA
3041 ATTTATACAAACCATGTACCAACACTTGAAAGATGGGTGGATATTTTCCAGGAAACAGATTTTGGGCAGGACATTCCATG
3121 CACTGGAAATAGCATGAACAAATGCATGAAAATTGCCTACAACATGCCTGGCACATAGCTGTGAGGTACCCTATGAGTTG
3201 TTGACTTGAAAACATGGAACTGCACAGGGCATTCAGGCAAGTGCAAGTGGTTCAGGGGCCAGCGCAGAGCAGAGTGCTGA
3281 GTAAAGATGTCAGAAAAGGAAAGCAATGGTCTGGTACAAGTCTTGTATAGAACAAGAAGTTTAGACTTTTGAACAGGCAA
3361 TCGAGATTTGGGGTTCAGAAAGATAAATCCCAAAAGTATGGAGAACAAAGGAACTCATTTTAAAGGACTAGCTAAGATGC
3441 TCAATCTCTAAAAAAAAAAGGATCTGTATTCGTGAGAGTAGAGAGAAAGGTTGTTTAGGAAGAGTCAACAGACTTTAGCA
3521 AAATCCTTTTATTTGATTCATGCATAACTCCTGATGGAGTGTCAAGGAAGACTCATTCACTTTTCTTTCCTGCCAGAAAG
3601 TTGGTTCTTGCAAAATAGATTAACTTGATGACTATGTGTATATTGGATACTCCTAATTTTAGCTCTGTTAGATATGTTTC
3681 TTTCTAAGGACAAGCAACTATGTATAGACTTGTTGTTTGAATTTTTTTTCAGTATATATATGTTTCTTGTTTTTCTATTT
3761 TTCTACTTCATACTGTTAATGTCAAATATCAAAAATGTTTTCCAGCAATATCAAGTTATGGCAATGGCAAAAGTCCTTGT
3841 TGTAGATGAGAAGCATATAAGAAATGGTTGCCAATCTTTGTTTTGTATGATCTATTTAGAGTTTTAACCAACCTAGATCT
3921 GTCAGCTAAGCTAATTTTATATTTGGTATACATGCATGTCAAATAAAGTTAATTTTACATACT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agCUGA--CGGUGAGAAUGAUCu 5'
            ||:|  ||: : |||||||| 
Target 5' ttGATTTGGCTTTACTTACTAGg 3'
 658 - 680 157.00 -14.50
2 
miRNA  3' agcUGACGGUGAGAAUGAUCu 5'
             |:| :|| || |||||| 
Target 5' tttATTATCA-TCATACTAGt 3'
 856 - 875 129.00 -8.80
3 
miRNA  3' agCUGACGG-------UGAGAAUGAUcu 5'
            |::||:|       :| :||||||  
Target 5' tgGGTTGTCTTTTAAAGCATTTACTAat 3'
 979 - 1006 127.00 -8.41
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
167259 4 ClinVar
902420 82 ClinVar
347852 99 ClinVar
903276 99 ClinVar
347853 107 ClinVar
899673 139 ClinVar
347854 295 ClinVar
347855 305 ClinVar
347856 330 ClinVar
899674 337 ClinVar
899675 496 ClinVar
899676 518 ClinVar
347857 550 ClinVar
900814 562 ClinVar
900815 625 ClinVar
347858 633 ClinVar
347859 641 ClinVar
347860 672 ClinVar
347861 818 ClinVar
347862 827 ClinVar
903351 829 ClinVar
903352 1121 ClinVar
347863 1156 ClinVar
347864 1282 ClinVar
347865 1339 ClinVar
899736 1391 ClinVar
899737 1419 ClinVar
347866 1586 ClinVar
347867 1868 ClinVar
900893 1937 ClinVar
900894 2065 ClinVar
347868 2191 ClinVar
902562 2223 ClinVar
347869 2257 ClinVar
347870 2311 ClinVar
902563 2323 ClinVar
902564 2348 ClinVar
347871 2397 ClinVar
903413 2418 ClinVar
347872 2419 ClinVar
347873 2454 ClinVar
899798 2459 ClinVar
347874 2464 ClinVar
347875 2468 ClinVar
347876 2475 ClinVar
347877 2530 ClinVar
347878 2626 ClinVar
900961 2630 ClinVar
347879 2671 ClinVar
347880 2741 ClinVar
902616 2855 ClinVar
902617 2856 ClinVar
347881 2969 ClinVar
902618 3073 ClinVar
903464 3082 ClinVar
903465 3164 ClinVar
903466 3214 ClinVar
903467 3264 ClinVar
347882 3265 ClinVar
899854 3383 ClinVar
347883 3436 ClinVar
347884 3450 ClinVar
899855 3510 ClinVar
347885 3619 ClinVar
347886 3655 ClinVar
347887 3713 ClinVar
901031 3715 ClinVar
347888 3722 ClinVar
347889 3771 ClinVar
347890 3820 ClinVar
901584 3918 ClinVar
347891 3959 ClinVar
347892 3979 ClinVar
347893 3981 ClinVar
COSM6341802 1 COSMIC
COSN30495219 3 COSMIC
COSN30482063 5 COSMIC
COSN14098050 13 COSMIC
COSN30492338 13 COSMIC
COSN30501101 46 COSMIC
COSN30534591 59 COSMIC
COSN30115190 66 COSMIC
COSN31573346 68 COSMIC
COSN31559739 87 COSMIC
COSN31500698 92 COSMIC
COSN30184657 99 COSMIC
COSN20620923 100 COSMIC
COSN30190700 100 COSMIC
COSN30505558 139 COSMIC
COSN30185933 140 COSMIC
COSN31579592 195 COSMIC
COSN24487955 267 COSMIC
COSN7744372 274 COSMIC
COSN20181641 315 COSMIC
COSN24619975 631 COSMIC
COSN7744373 685 COSMIC
COSN20785657 833 COSMIC
COSN15661798 904 COSMIC
COSN27938033 1045 COSMIC
COSN35597 1084 COSMIC
COSN5054663 1402 COSMIC
COSN6807441 1703 COSMIC
COSN25204825 1740 COSMIC
COSN25597426 1799 COSMIC
COSN20994739 2033 COSMIC
COSN29385018 2131 COSMIC
COSN27707040 2191 COSMIC
COSN20100658 2259 COSMIC
COSN17181920 2299 COSMIC
COSN6807442 2330 COSMIC
COSN21806417 2514 COSMIC
COSN15668221 2523 COSMIC
COSN9886708 2626 COSMIC
COSN17181962 2796 COSMIC
COSN20091121 2901 COSMIC
COSN21870873 3152 COSMIC
COSN16640598 3238 COSMIC
COSN15289472 3241 COSMIC
COSN32056362 3242 COSMIC
COSN27207166 3460 COSMIC
COSN27594564 3460 COSMIC
COSN28197998 3587 COSMIC
COSN26414047 3664 COSMIC
COSN32062443 3708 COSMIC
COSN24748742 3835 COSMIC
COSN16836833 3919 COSMIC
COSN25562650 3932 COSMIC
COSN21740365 3975 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs200942685 4 dbSNP
rs1018616680 5 dbSNP
rs1242924418 7 dbSNP
rs750588461 9 dbSNP
rs769866375 11 dbSNP
rs1459522750 15 dbSNP
rs1426758632 20 dbSNP
rs773074657 21 dbSNP
rs551191456 22 dbSNP
rs986655758 27 dbSNP
rs1305230427 29 dbSNP
rs1161969452 34 dbSNP
rs1363482722 35 dbSNP
rs765926361 39 dbSNP
rs1360097245 41 dbSNP
rs1314180526 42 dbSNP
rs911060258 44 dbSNP
rs1246303153 45 dbSNP
rs774094960 45 dbSNP
rs942493078 47 dbSNP
rs1381505834 61 dbSNP
rs1043516399 65 dbSNP
rs1312666157 67 dbSNP
rs1448705137 72 dbSNP
rs996481173 77 dbSNP
rs763149722 82 dbSNP
rs1320161765 84 dbSNP
rs529360609 99 dbSNP
rs145519008 100 dbSNP
rs189439579 107 dbSNP
rs896122455 110 dbSNP
rs971454075 114 dbSNP
rs1214134558 119 dbSNP
rs981432561 122 dbSNP
rs1177154465 130 dbSNP
rs1241475769 139 dbSNP
rs1266707299 140 dbSNP
rs1222514813 144 dbSNP
rs1289138591 145 dbSNP
rs927284877 147 dbSNP
rs1483506869 153 dbSNP
rs1389638155 163 dbSNP
rs937622337 164 dbSNP
rs1305093919 167 dbSNP
rs1425374580 169 dbSNP
rs974708065 186 dbSNP
rs1161875471 187 dbSNP
rs1183108827 191 dbSNP
rs975518432 193 dbSNP
rs1443475052 209 dbSNP
rs138149948 216 dbSNP
rs375494896 223 dbSNP
rs930100501 229 dbSNP
rs1047253791 232 dbSNP
rs906067181 237 dbSNP
rs1218369482 238 dbSNP
rs533747915 239 dbSNP
rs1345142682 240 dbSNP
rs1002109296 241 dbSNP
rs1313947576 253 dbSNP
rs551893360 258 dbSNP
rs1405674970 259 dbSNP
rs1304667206 260 dbSNP
rs1364742972 267 dbSNP
rs768021519 272 dbSNP
rs1384135590 276 dbSNP
rs181953559 282 dbSNP
rs994183410 283 dbSNP
rs1310310702 284 dbSNP
rs1432139358 288 dbSNP
rs1177758860 289 dbSNP
rs752182896 292 dbSNP
rs1025619745 293 dbSNP
rs886059162 295 dbSNP
rs955335050 300 dbSNP
rs1054748025 303 dbSNP
rs1194616368 305 dbSNP
rs146990234 305 dbSNP
rs886059163 305 dbSNP
rs1203204683 306 dbSNP
rs1484099051 307 dbSNP
rs878994023 314 dbSNP
rs1263471915 320 dbSNP
rs1312703906 326 dbSNP
rs886059164 330 dbSNP
rs1229689476 331 dbSNP
rs1018599196 334 dbSNP
rs963950353 337 dbSNP
rs149562294 338 dbSNP
rs1408789261 340 dbSNP
rs185552017 348 dbSNP
rs760085389 353 dbSNP
rs1337760000 369 dbSNP
rs1469744286 372 dbSNP
rs1404518956 373 dbSNP
rs1002884862 374 dbSNP
rs574326230 393 dbSNP
rs1372194948 394 dbSNP
rs1190602490 397 dbSNP
rs958916074 400 dbSNP
rs775787956 406 dbSNP
rs1243529810 409 dbSNP
rs1202731020 420 dbSNP
rs1459973316 425 dbSNP
rs1275024029 442 dbSNP
rs1197674960 461 dbSNP
rs974359394 468 dbSNP
rs1269621016 476 dbSNP
rs1178682116 478 dbSNP
rs1225560274 481 dbSNP
rs1239657052 493 dbSNP
rs755614971 496 dbSNP
rs1452365614 505 dbSNP
rs1381272474 513 dbSNP
rs1437386420 516 dbSNP
rs535367516 518 dbSNP
rs1407634127 522 dbSNP
rs935078799 525 dbSNP
rs987863762 530 dbSNP
rs912722256 532 dbSNP
rs555951629 533 dbSNP
rs559387230 535 dbSNP
rs1469379604 540 dbSNP
rs944451668 542 dbSNP
rs886059165 550 dbSNP
rs868167241 551 dbSNP
rs949027147 557 dbSNP
rs1046022135 562 dbSNP
rs931675830 567 dbSNP
rs1279182001 576 dbSNP
rs1292734352 584 dbSNP
rs1054125317 588 dbSNP
rs906091321 590 dbSNP
rs1381067845 591 dbSNP
rs893066717 602 dbSNP
rs937555114 604 dbSNP
rs554008858 609 dbSNP
rs572268670 612 dbSNP
rs907023102 626 dbSNP
rs1322679405 627 dbSNP
rs886059166 633 dbSNP
rs1259367359 634 dbSNP
rs1162514462 640 dbSNP
rs574458445 641 dbSNP
rs898644789 643 dbSNP
rs994214354 652 dbSNP
rs1025649420 668 dbSNP
rs886059167 672 dbSNP
rs1469576895 682 dbSNP
rs1376353217 685 dbSNP
rs1008641826 688 dbSNP
rs1018212270 694 dbSNP
rs763277997 698 dbSNP
rs964291080 703 dbSNP
rs995950502 704 dbSNP
rs1222064589 707 dbSNP
rs1026966003 717 dbSNP
rs1286794803 720 dbSNP
rs1224669627 723 dbSNP
rs1350666948 733 dbSNP
rs979341984 747 dbSNP
rs1478591404 748 dbSNP
rs1345625184 760 dbSNP
rs1032193127 763 dbSNP
rs530247920 764 dbSNP
rs558727161 773 dbSNP
rs1193241754 775 dbSNP
rs956494086 777 dbSNP
rs577405452 782 dbSNP
rs1318793785 784 dbSNP
rs987925871 785 dbSNP
rs749003295 788 dbSNP
rs983003222 807 dbSNP
rs1178527235 812 dbSNP
rs1480699658 813 dbSNP
rs78274322 818 dbSNP
rs1487660199 820 dbSNP
rs1480361493 826 dbSNP
rs778612442 827 dbSNP
rs975571998 832 dbSNP
rs921717536 839 dbSNP
rs1266575821 845 dbSNP
rs1225927281 846 dbSNP
rs1282106863 862 dbSNP
rs1324814092 862 dbSNP
rs949057922 868 dbSNP
rs563046583 879 dbSNP
rs980833226 882 dbSNP
rs1363721314 887 dbSNP
rs1270387055 889 dbSNP
rs530288632 905 dbSNP
rs542073374 906 dbSNP
rs926280073 929 dbSNP
rs990253989 932 dbSNP
rs560187046 941 dbSNP
rs914216813 963 dbSNP
rs190025555 967 dbSNP
rs1175872515 970 dbSNP
rs1408262924 977 dbSNP
rs1431477037 981 dbSNP
rs1041579303 983 dbSNP
rs1187355738 988 dbSNP
rs1475187607 991 dbSNP
rs937609571 993 dbSNP
rs1205908964 995 dbSNP
rs1350656442 1003 dbSNP
rs1438385287 1006 dbSNP
rs1038579212 1011 dbSNP
rs181864003 1014 dbSNP
rs938550725 1024 dbSNP
rs1055627086 1041 dbSNP
rs1291525534 1052 dbSNP
rs898675546 1058 dbSNP
rs1344820528 1070 dbSNP
rs372629942 1071 dbSNP
rs930136037 1072 dbSNP
rs1047172635 1079 dbSNP
rs891191732 1085 dbSNP
rs894572993 1086 dbSNP
rs1316965298 1097 dbSNP
rs1219095697 1106 dbSNP
rs1381994346 1113 dbSNP
rs995590800 1115 dbSNP
rs745651761 1121 dbSNP
rs887082942 1122 dbSNP
rs1409623473 1129 dbSNP
rs1388537319 1133 dbSNP
rs1213458351 1136 dbSNP
rs72683214 1156 dbSNP
rs570155177 1164 dbSNP
rs899806897 1168 dbSNP
rs1001191325 1177 dbSNP
rs1032255041 1179 dbSNP
rs1342656068 1180 dbSNP
rs747889214 1187 dbSNP
rs1452920792 1190 dbSNP
rs1251395602 1192 dbSNP
rs1203186030 1193 dbSNP
rs531290441 1196 dbSNP
rs965617552 1205 dbSNP
rs1267127083 1209 dbSNP
rs956567049 1212 dbSNP
rs1293449718 1217 dbSNP
rs1246502791 1229 dbSNP
rs1490286904 1231 dbSNP
rs1009386880 1233 dbSNP
rs1195103434 1244 dbSNP
rs549493744 1248 dbSNP
rs1265946653 1250 dbSNP
rs112015615 1254 dbSNP
rs1373895435 1274 dbSNP
rs572110901 1282 dbSNP
rs567839864 1294 dbSNP
rs1368993378 1301 dbSNP
rs1167368299 1303 dbSNP
rs1414828887 1304 dbSNP
rs535606355 1310 dbSNP
rs953264816 1317 dbSNP
rs989894521 1328 dbSNP
rs914242783 1333 dbSNP
rs12507608 1339 dbSNP
rs980525063 1374 dbSNP
rs767442489 1390 dbSNP
rs769920153 1391 dbSNP
rs1270354880 1392 dbSNP
rs974329304 1393 dbSNP
rs1459043417 1395 dbSNP
rs1263470604 1397 dbSNP
rs1240905647 1398 dbSNP
rs1317520855 1400 dbSNP
rs1227921166 1405 dbSNP
rs1284211378 1406 dbSNP
rs920174967 1414 dbSNP
rs148321604 1419 dbSNP
rs539390445 1423 dbSNP
rs1390265837 1428 dbSNP
rs1292215691 1430 dbSNP
rs1047202880 1446 dbSNP
rs1364926712 1456 dbSNP
rs558974326 1458 dbSNP
rs912698777 1460 dbSNP
rs1471874646 1470 dbSNP
rs1290564122 1472 dbSNP
rs944137910 1485 dbSNP
rs1039749753 1505 dbSNP
rs1359234022 1507 dbSNP
rs931406114 1508 dbSNP
rs1264824813 1512 dbSNP
rs1048434649 1517 dbSNP
rs887113921 1517 dbSNP
rs1259886704 1518 dbSNP
rs1206745592 1520 dbSNP
rs773276461 1525 dbSNP
rs1445727929 1526 dbSNP
rs1000871889 1533 dbSNP
rs1053729287 1535 dbSNP
rs892377073 1548 dbSNP
rs1009458802 1567 dbSNP
rs1224199289 1575 dbSNP
rs1330783188 1582 dbSNP
rs577335043 1583 dbSNP
rs1384087250 1584 dbSNP
rs886059168 1586 dbSNP
rs997080231 1602 dbSNP
rs186510513 1605 dbSNP
rs1408923620 1613 dbSNP
rs1176617481 1615 dbSNP
rs1477392546 1616 dbSNP
rs1420124802 1620 dbSNP
rs1375629660 1621 dbSNP
rs1194909491 1631 dbSNP
rs958195307 1632 dbSNP
rs1033426724 1634 dbSNP
rs990315719 1637 dbSNP
rs1021362885 1646 dbSNP
rs967096816 1646 dbSNP
rs963413343 1647 dbSNP
rs973024842 1648 dbSNP
rs928288762 1649 dbSNP
rs1382710276 1652 dbSNP
rs1399969888 1660 dbSNP
rs143245209 1663 dbSNP
rs920205999 1665 dbSNP
rs960242124 1671 dbSNP
rs991397920 1673 dbSNP
rs1297403233 1675 dbSNP
rs951642166 1685 dbSNP
rs982969798 1690 dbSNP
rs915731714 1691 dbSNP
rs1385679511 1699 dbSNP
rs931126119 1703 dbSNP
rs1414354793 1705 dbSNP
rs1399437862 1733 dbSNP
rs1169080657 1737 dbSNP
rs1048701804 1741 dbSNP
rs1166525193 1742 dbSNP
rs912723617 1748 dbSNP
rs1446205506 1757 dbSNP
rs1243472307 1759 dbSNP
rs370363561 1763 dbSNP
rs944184572 1765 dbSNP
rs556660642 1771 dbSNP
rs1449804561 1783 dbSNP
rs1196135213 1785 dbSNP
rs1343223974 1786 dbSNP
rs921341703 1799 dbSNP
rs1226715214 1822 dbSNP
rs1377132150 1826 dbSNP
rs1241355910 1837 dbSNP
rs564373777 1838 dbSNP
rs1447957748 1844 dbSNP
rs879577219 1848 dbSNP
rs1339211774 1867 dbSNP
rs78441257 1868 dbSNP
rs892449013 1869 dbSNP
rs1369614574 1875 dbSNP
rs1166352519 1878 dbSNP
rs945279276 1881 dbSNP
rs755558550 1882 dbSNP
rs1049977156 1888 dbSNP
rs779557987 1897 dbSNP
rs1162373971 1902 dbSNP
rs1471803855 1915 dbSNP
rs190180367 1921 dbSNP
rs560568848 1926 dbSNP
rs1011111572 1937 dbSNP
rs1203322781 1943 dbSNP
rs527978375 1952 dbSNP
rs766606185 1953 dbSNP
rs549925496 1955 dbSNP
rs1490884496 1962 dbSNP
rs1201823988 1967 dbSNP
rs1291107712 1973 dbSNP
rs1228099961 1974 dbSNP
rs1033870505 1978 dbSNP
rs546215373 1979 dbSNP
rs1240326823 1994 dbSNP
rs994515716 2015 dbSNP
rs1305568835 2024 dbSNP
rs1025952055 2030 dbSNP
rs543616419 2033 dbSNP
rs1322727155 2039 dbSNP
rs998530833 2049 dbSNP
rs950346983 2061 dbSNP
rs1173137179 2062 dbSNP
rs959693267 2065 dbSNP
rs1159102184 2070 dbSNP
rs778577249 2071 dbSNP
rs983001034 2080 dbSNP
rs1411338059 2092 dbSNP
rs1180085187 2100 dbSNP
rs563717606 2101 dbSNP
rs1019864025 2106 dbSNP
rs1247473241 2140 dbSNP
rs965954418 2157 dbSNP
rs1221355105 2161 dbSNP
rs9992773 2166 dbSNP
rs952720274 2173 dbSNP
rs921406500 2175 dbSNP
rs983984815 2189 dbSNP
rs886059169 2191 dbSNP
rs1400593096 2192 dbSNP
rs989526030 2205 dbSNP
rs1367914450 2210 dbSNP
rs940106140 2223 dbSNP
rs1304410805 2237 dbSNP
rs1318651282 2249 dbSNP
rs1456692109 2252 dbSNP
rs372786858 2257 dbSNP
rs375794187 2257 dbSNP
rs1470982254 2266 dbSNP
rs1238756807 2270 dbSNP
rs1425899649 2286 dbSNP
rs1276006647 2288 dbSNP
rs1190862246 2291 dbSNP
rs549383439 2301 dbSNP
rs1201862714 2303 dbSNP
rs945352794 2304 dbSNP
rs922603517 2305 dbSNP
rs1464897650 2306 dbSNP
rs368622887 2311 dbSNP
rs908347012 2313 dbSNP
rs1050187788 2314 dbSNP
rs894080095 2322 dbSNP
rs1046783706 2323 dbSNP
rs906430750 2324 dbSNP
rs1437056224 2327 dbSNP
rs937871226 2328 dbSNP
rs1379322053 2329 dbSNP
rs902665915 2330 dbSNP
rs567776816 2331 dbSNP
rs1175094548 2332 dbSNP
rs1035367305 2334 dbSNP
rs898969163 2339 dbSNP
rs994546908 2340 dbSNP
rs528985596 2348 dbSNP
rs1023042190 2349 dbSNP
rs1391212671 2351 dbSNP
rs547558905 2352 dbSNP
rs1421913064 2360 dbSNP
rs1008500941 2364 dbSNP
rs1222291531 2372 dbSNP
rs1283187047 2375 dbSNP
rs1318752877 2376 dbSNP
rs1483829149 2379 dbSNP
rs561764781 2384 dbSNP
rs984015805 2394 dbSNP
rs867110135 2397 dbSNP
rs565769396 2398 dbSNP
rs1210226838 2401 dbSNP
rs1015440844 2402 dbSNP
rs1270694378 2403 dbSNP
rs961168810 2405 dbSNP
rs1378328883 2406 dbSNP
rs1302405630 2407 dbSNP
rs1445875439 2410 dbSNP
rs548020271 2412 dbSNP
rs180968901 2417 dbSNP
rs569981218 2418 dbSNP
rs886059170 2419 dbSNP
rs759908101 2429 dbSNP
rs571414566 2430 dbSNP
rs1165801822 2431 dbSNP
rs1424960845 2433 dbSNP
rs1401591857 2435 dbSNP
rs1179653793 2441 dbSNP
rs1251855099 2445 dbSNP
rs985505288 2445 dbSNP
rs886059171 2454 dbSNP
rs767911401 2455 dbSNP
rs1293744285 2457 dbSNP
rs1245238629 2458 dbSNP
rs538201546 2459 dbSNP
rs566246091 2460 dbSNP
rs530211304 2464 dbSNP
rs777155226 2466 dbSNP
rs927924680 2467 dbSNP
rs886059172 2468 dbSNP
rs746364287 2469 dbSNP
rs1349607902 2470 dbSNP
rs535617283 2471 dbSNP
rs895596307 2472 dbSNP
rs769393659 2475 dbSNP
rs886059173 2475 dbSNP
rs1180809065 2483 dbSNP
rs1471444150 2485 dbSNP
rs1293452382 2491 dbSNP
rs1210263750 2506 dbSNP
rs868709535 2507 dbSNP
rs920434970 2508 dbSNP
rs930468249 2514 dbSNP
rs1047495130 2515 dbSNP
rs554329559 2516 dbSNP
rs538696889 2522 dbSNP
rs886178506 2523 dbSNP
rs185391295 2530 dbSNP
rs753367163 2531 dbSNP
rs900128726 2543 dbSNP
rs1022648376 2546 dbSNP
rs546010418 2547 dbSNP
rs888070895 2548 dbSNP
rs1005483008 2550 dbSNP
rs1015555397 2552 dbSNP
rs564406829 2553 dbSNP
rs140038892 2555 dbSNP
rs1163282706 2556 dbSNP
rs1361748241 2561 dbSNP
rs1029895965 2565 dbSNP
rs1325849613 2567 dbSNP
rs1378814147 2574 dbSNP
rs958232349 2576 dbSNP
rs1199170684 2578 dbSNP
rs1432171444 2580 dbSNP
rs140599145 2596 dbSNP
rs1478796457 2597 dbSNP
rs1170301909 2598 dbSNP
rs1172598822 2598 dbSNP
rs1186597879 2598 dbSNP
rs1194296939 2598 dbSNP
rs1201103510 2598 dbSNP
rs1247136424 2598 dbSNP
rs1254461662 2598 dbSNP
rs1258422943 2598 dbSNP
rs1299725492 2598 dbSNP
rs1320501237 2598 dbSNP
rs1329124206 2598 dbSNP
rs1366624544 2598 dbSNP
rs1375571687 2598 dbSNP
rs1403727615 2598 dbSNP
rs1437684694 2598 dbSNP
rs1444006872 2598 dbSNP
rs1449867650 2598 dbSNP
rs1465287297 2598 dbSNP
rs1483070520 2598 dbSNP
rs760244398 2598 dbSNP
rs1011059863 2599 dbSNP
rs1343356631 2603 dbSNP
rs1021078603 2616 dbSNP
rs1297241238 2616 dbSNP
rs1287627544 2617 dbSNP
rs1361433522 2619 dbSNP
rs1342772958 2622 dbSNP
rs966797470 2624 dbSNP
rs1317489342 2625 dbSNP
rs982581247 2625 dbSNP
rs147801928 2626 dbSNP
rs60131375 2626 dbSNP
rs77071498 2626 dbSNP
rs959599527 2627 dbSNP
rs990784466 2628 dbSNP
rs142369122 2629 dbSNP
rs920508095 2629 dbSNP
rs112759047 2630 dbSNP
rs985922881 2630 dbSNP
rs1245009837 2632 dbSNP
rs915247354 2632 dbSNP
rs1309624653 2633 dbSNP
rs930508873 2636 dbSNP
rs1047569612 2640 dbSNP
rs907692118 2643 dbSNP
rs944476814 2644 dbSNP
rs1483320838 2648 dbSNP
rs1359130934 2649 dbSNP
rs1204966535 2650 dbSNP
rs1285283218 2651 dbSNP
rs1040493614 2653 dbSNP
rs1240923135 2655 dbSNP
rs1289614968 2659 dbSNP
rs900200580 2661 dbSNP
rs1443562243 2662 dbSNP
rs1183381764 2663 dbSNP
rs116751881 2665 dbSNP
rs540160820 2667 dbSNP
rs1406854915 2669 dbSNP
rs17032000 2671 dbSNP
rs924234780 2687 dbSNP
rs62324945 2696 dbSNP
rs1056648392 2716 dbSNP
rs1184424422 2726 dbSNP
rs865818248 2733 dbSNP
rs528965656 2737 dbSNP
rs1473081815 2740 dbSNP
rs528370871 2741 dbSNP
rs886059174 2741 dbSNP
rs1466635080 2743 dbSNP
rs948501330 2757 dbSNP
rs1338733221 2760 dbSNP
rs1044507001 2778 dbSNP
rs888192143 2783 dbSNP
rs894048429 2787 dbSNP
rs566490055 2793 dbSNP
rs1452111852 2794 dbSNP
rs1391678750 2798 dbSNP
rs1011133617 2802 dbSNP
rs547201479 2808 dbSNP
rs1438118907 2815 dbSNP
rs1331478520 2819 dbSNP
rs1375314254 2827 dbSNP
rs1005262794 2848 dbSNP
rs1403593892 2849 dbSNP
rs1015252444 2851 dbSNP
rs745679958 2855 dbSNP
rs559418175 2858 dbSNP
rs953972080 2860 dbSNP
rs1306230305 2865 dbSNP
rs1312663523 2866 dbSNP
rs774014020 2867 dbSNP
rs764376947 2868 dbSNP
rs1467555707 2874 dbSNP
rs532946939 2880 dbSNP
rs968100604 2880 dbSNP
rs1327899560 2881 dbSNP
rs978086691 2903 dbSNP
rs1220611437 2908 dbSNP
rs1345268571 2916 dbSNP
rs1274100382 2922 dbSNP
rs1198959112 2923 dbSNP
rs1367333454 2929 dbSNP
rs117251145 2953 dbSNP
rs1234225494 2954 dbSNP
rs527683212 2956 dbSNP
rs886059175 2969 dbSNP
rs189707176 2974 dbSNP
rs1156992830 2979 dbSNP
rs1035505500 2989 dbSNP
rs959438806 2995 dbSNP
rs991217085 3003 dbSNP
rs1407929115 3012 dbSNP
rs920569049 3019 dbSNP
rs1426094413 3021 dbSNP
rs960964680 3034 dbSNP
rs951985399 3040 dbSNP
rs983295275 3046 dbSNP
rs1189780848 3048 dbSNP
rs1464796147 3056 dbSNP
rs1469331273 3060 dbSNP
rs907721701 3066 dbSNP
rs944531041 3073 dbSNP
rs1439796387 3076 dbSNP
rs948256766 3077 dbSNP
rs779703148 3082 dbSNP
rs1297980374 3087 dbSNP
rs747016968 3100 dbSNP
rs552427005 3103 dbSNP
rs921660241 3108 dbSNP
rs931694937 3119 dbSNP
rs1287229060 3122 dbSNP
rs1406759100 3126 dbSNP
rs1054135597 3127 dbSNP
rs1359762722 3140 dbSNP
rs1333791507 3146 dbSNP
rs1433021142 3148 dbSNP
rs183392348 3149 dbSNP
rs1322267261 3156 dbSNP
rs1218686201 3158 dbSNP
rs768550356 3164 dbSNP
rs1042625897 3171 dbSNP
rs1417957384 3175 dbSNP
rs550189377 3176 dbSNP
rs1472855725 3180 dbSNP
rs902712237 3181 dbSNP
rs1004115826 3187 dbSNP
rs774482546 3194 dbSNP
rs1208290205 3196 dbSNP
rs1483822372 3201 dbSNP
rs1275167809 3202 dbSNP
rs1204136732 3203 dbSNP
rs1202866750 3216 dbSNP
rs568398358 3218 dbSNP
rs998114585 3222 dbSNP
rs1051419016 3224 dbSNP
rs1379988975 3230 dbSNP
rs1292688034 3243 dbSNP
rs889702294 3251 dbSNP
rs1035132583 3259 dbSNP
rs28469192 3264 dbSNP
rs115053323 3265 dbSNP
rs1461779358 3267 dbSNP
rs968118492 3272 dbSNP
rs1027617025 3275 dbSNP
rs1406396672 3283 dbSNP
rs999543007 3295 dbSNP
rs1267358751 3300 dbSNP
rs1480165672 3312 dbSNP
rs1030964123 3321 dbSNP
rs1473390238 3325 dbSNP
rs761631328 3334 dbSNP
rs1421924381 3335 dbSNP
rs1180941213 3337 dbSNP
rs952016216 3355 dbSNP
rs1479553187 3359 dbSNP
rs1266918814 3360 dbSNP
rs1169993418 3361 dbSNP
rs749322180 3363 dbSNP
rs150691650 3364 dbSNP
rs1426283455 3369 dbSNP
rs539607105 3375 dbSNP
rs12500092 3383 dbSNP
rs774570057 3386 dbSNP
rs965930191 3391 dbSNP
rs866310007 3393 dbSNP
rs976306451 3397 dbSNP
rs1271360252 3399 dbSNP
rs1359440986 3402 dbSNP
rs1458905018 3403 dbSNP
rs1394393915 3404 dbSNP
rs1162246941 3419 dbSNP
rs1213683286 3427 dbSNP
rs886059176 3436 dbSNP
rs1290114198 3442 dbSNP
rs750320381 3445 dbSNP
rs369562633 3450 dbSNP
rs538190903 3450 dbSNP
rs909350078 3450 dbSNP
rs941106568 3451 dbSNP
rs1191523641 3464 dbSNP
rs1036740983 3465 dbSNP
rs989859269 3466 dbSNP
rs1290259672 3472 dbSNP
rs918262599 3473 dbSNP
rs1331324959 3477 dbSNP
rs1268805773 3478 dbSNP
rs1238627314 3484 dbSNP
rs1315323109 3500 dbSNP
rs1303959198 3501 dbSNP
rs914245699 3503 dbSNP
rs1370645336 3505 dbSNP
rs1243976906 3510 dbSNP
rs1437853010 3515 dbSNP
rs945684519 3530 dbSNP
rs1050780814 3535 dbSNP
rs889724267 3538 dbSNP
rs1006794692 3542 dbSNP
rs188859414 3555 dbSNP
rs1176595494 3571 dbSNP
rs903658592 3579 dbSNP
rs1186188264 3587 dbSNP
rs772543094 3591 dbSNP
rs1190465497 3593 dbSNP
rs999573868 3598 dbSNP
rs149873891 3611 dbSNP
rs939591353 3612 dbSNP
rs1204631550 3616 dbSNP
rs1057054776 3617 dbSNP
rs17032002 3619 dbSNP
rs1161395465 3620 dbSNP
rs1364888962 3641 dbSNP
rs1347653026 3648 dbSNP
rs191784588 3655 dbSNP
rs1231321415 3661 dbSNP
rs1366518468 3663 dbSNP
rs1027687179 3673 dbSNP
rs1320187309 3676 dbSNP
rs887819484 3677 dbSNP
rs1403643892 3678 dbSNP
rs1303068063 3692 dbSNP
rs1433669441 3696 dbSNP
rs1004822916 3702 dbSNP
rs985016255 3710 dbSNP
rs144961748 3713 dbSNP
rs183640442 3715 dbSNP
rs1190867659 3716 dbSNP
rs1313301500 3722 dbSNP
rs886059177 3722 dbSNP
rs1258304776 3728 dbSNP
rs1211894790 3732 dbSNP
rs764675049 3733 dbSNP
rs753420609 3735 dbSNP
rs867384695 3746 dbSNP
rs568607589 3758 dbSNP
rs972217609 3758 dbSNP
rs886059178 3771 dbSNP
rs1207734439 3774 dbSNP
rs1343570161 3775 dbSNP
rs1270140940 3776 dbSNP
rs976001257 3781 dbSNP
rs1225791169 3783 dbSNP
rs188122902 3798 dbSNP
rs1445400894 3812 dbSNP
rs933737467 3816 dbSNP
rs191600425 3820 dbSNP
rs910865730 3834 dbSNP
rs183881619 3840 dbSNP
rs1395425358 3843 dbSNP
rs1166121916 3853 dbSNP
rs1459336863 3854 dbSNP
rs1370324869 3858 dbSNP
rs1188710279 3871 dbSNP
rs1043590998 3873 dbSNP
rs1255652843 3874 dbSNP
rs1184540977 3877 dbSNP
rs1438756992 3884 dbSNP
rs186713682 3886 dbSNP
rs903773131 3898 dbSNP
rs549326101 3899 dbSNP
rs989931191 3914 dbSNP
rs1052203357 3918 dbSNP
rs1265553077 3920 dbSNP
rs72959219 3928 dbSNP
rs1160281966 3940 dbSNP
rs1013644480 3947 dbSNP
rs967057353 3950 dbSNP
rs977070831 3952 dbSNP
rs535449170 3956 dbSNP
rs1336743774 3958 dbSNP
rs886059179 3959 dbSNP
rs1407863514 3965 dbSNP
rs576253258 3965 dbSNP
rs1388489435 3967 dbSNP
rs928299141 3969 dbSNP
rs1165822369 3972 dbSNP
rs886059180 3979 dbSNP
rs547781301 3980 dbSNP
rs191125324 3981 dbSNP
rs760947816 3982 dbSNP
rs916770848 3984 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agcuGACGGUGA-GAAUGAucu 5'
              :|| | :| ||||||   
Target 5' ----UUGGCUUUACUUACU--- 3'
 		1 - 15
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000336356.3 | 3UTR | UUGGCUUUACUUACU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.652 2.8e-4 -0.653 2.7e-4 24 Click to see details
GSE28260 Renal cortex and medulla -0.746 1.7e-3 -0.709 3.3e-3 13 Click to see details
GSE19536 Breast cancer -0.259 4.6e-3 -0.298 1.3e-3 100 Click to see details
GSE19783 ER- ER- breast cancer -0.215 2.9e-2 -0.239 1.7e-2 79 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.371 5.4e-2 -0.398 4.1e-2 20 Click to see details
GSE14794 Lymphoblastoid cells 0.17 5.5e-2 0.169 5.6e-2 90 Click to see details
GSE27834 Pluripotent stem cells -0.344 9.6e-2 -0.044 4.4e-1 16 Click to see details
GSE21687 Ependynoma primary tumors -0.148 1.2e-1 0.017 4.5e-1 64 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.198 1.7e-1 0.140 2.5e-1 25 Click to see details
GSE17498 Multiple myeloma -0.126 2.2e-1 -0.164 1.6e-1 40 Click to see details
GSE32688 Pancreatic cancer -0.119 2.6e-1 0.105 2.8e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.105 3.1e-1 -0.216 1.6e-1 24 Click to see details
GSE17306 Multiple myeloma -0.071 3.1e-1 -0.092 2.6e-1 49 Click to see details
GSE19350 CNS germ cell tumors 0.121 3.5e-1 0.035 4.6e-1 12 Click to see details
GSE19783 ER+ ER+ breast cancer 0.08 3.7e-1 0.000 5.0e-1 20 Click to see details
GSE42095 Differentiated embryonic stem cells 0.033 4.4e-1 -0.071 3.7e-1 23 Click to see details
GSE38226 Liver fibrosis -0.028 4.5e-1 -0.057 4.0e-1 21 Click to see details
GSE38226 Liver fibrosis -0.028 4.5e-1 -0.057 4.0e-1 21 Click to see details
GSE38226 Liver fibrosis -0.028 4.5e-1 -0.057 4.0e-1 21 Click to see details
GSE38226 Liver fibrosis -0.028 4.5e-1 -0.057 4.0e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
KIRP 0.398 0.02 0.467 0.01 29 Click to see details
ESCA 0.559 0.04 0.727 0.01 11 Click to see details
UCEC 0.428 0.04 0.352 0.08 18 Click to see details
PRAD 0.284 0.05 0.170 0.16 36 Click to see details
PAAD -0.879 0.06 -0.800 0.1 4 Click to see details
KIRC -0.204 0.1 -0.178 0.14 40 Click to see details
LUAD 0.418 0.11 0.539 0.05 10 Click to see details
PCPG 0.931 0.12 0.500 0.33 3 Click to see details
HNSC 0.202 0.12 0.196 0.13 35 Click to see details
STAD -0.214 0.14 -0.201 0.15 28 Click to see details
BLCA 0.21 0.21 0.279 0.14 17 Click to see details
LIHC 0.109 0.23 0.098 0.25 49 Click to see details
CHOL 0.334 0.23 0.500 0.13 7 Click to see details
BRCA -0.073 0.34 -0.241 0.08 34 Click to see details
CESC -0.42 0.36 -0.500 0.33 3 Click to see details
LUSC -0.019 0.46 -0.046 0.4 35 Click to see details
KICH -0.013 0.48 -0.021 0.46 22 Click to see details
THCA 0.001 0.5 -0.006 0.48 58 Click to see details
THCA 0.001 0.5 -0.006 0.48 58 Click to see details
27 hsa-miR-628-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT039584 CDC14A cell division cycle 14A 1 1
MIRT039585 AGO1 argonaute 1, RISC catalytic component 2 3
MIRT039586 TGFBRAP1 transforming growth factor beta receptor associated protein 1 1 1
MIRT039587 LRP6 LDL receptor related protein 6 1 1
MIRT071876 BTF3L4 basic transcription factor 3 like 4 2 2
MIRT097443 JMY junction mediating and regulatory protein, p53 cofactor 2 4
MIRT100100 ABT1 activator of basal transcription 1 2 8
MIRT147692 CBX4 chromobox 4 2 2
MIRT408248 PURA purine rich element binding protein A 2 2
MIRT442047 LRAT lecithin retinol acyltransferase 2 2
MIRT444412 RAB3IP RAB3A interacting protein 2 2
MIRT452599 REPIN1 replication initiator 1 2 2
MIRT469515 RBFOX2 RNA binding protein, fox-1 homolog 2 2 8
MIRT498192 AKR1B10 aldo-keto reductase family 1 member B10 2 2
MIRT500151 CREBBP CREB binding protein 2 2
MIRT507319 FAM60A SIN3-HDAC complex associated factor 2 6
MIRT508343 ZNF273 zinc finger protein 273 2 6
MIRT520480 TRIM13 tripartite motif containing 13 2 2
MIRT522461 MMP16 matrix metallopeptidase 16 2 4
MIRT547116 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548675 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT553756 TARBP2 TARBP2, RISC loading complex RNA binding subunit 2 4
MIRT559437 ARSJ arylsulfatase family member J 2 2
MIRT610490 GPC4 glypican 4 2 2
MIRT644682 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT658214 FBXO21 F-box protein 21 2 2
MIRT756083 TP53 tumor protein p53 4 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-628 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved resistant High Tongue Squamous Cell Carcinoma cell line (Tca8113)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-628-3p Erlotinib 176870 NSC718781 approved sensitive High Epithelial Cancer cell line (A549, UKY-29, H460, H1975, H1650, H3255, PC-9, H358)
hsa-miR-628-3p Siop Treatment Protocol sensitive High Nephroblastoma tissue
hsa-miR-628-3p Sunitinib 5329102 NSC750690 approved resistant High Metastatic Renal Cell Carcinoma tissue and cell line (Caki-2)
hsa-miR-628-3p Chemotherapy sensitive High Epithelial Ovarian Cancer tissue
hsa-miR-628-3p Platinum-based doublet chemotherapy resistant Low Lung Adenocarcinoma tissue
hsa-miR-628-3p Doxorubicin 31703 NSC123127 approved sensitive High Gastric Cancer cell line (SGC7901)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (TAMR8)
hsa-miR-628-3p Aromatase Inhibitor sensitive Low Breast Cancer cell line (MCF-7)
hsa-miR-628-3p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-628-3p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-628-3p Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-miR-628-3p Platinum 23939 sensitive High High-Grade Serous Ovarian Cancer tissue
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved sensitive High Bladder Cancer cell line (CDDP-R-BOY, CDDP-R-T24)
hsa-miR-628-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-628-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-628-3p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-628-3p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-628-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (TamR8)
hsa-miR-628-3p Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-628-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-628-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-628-3p Docetaxel+Cisplatin+5-Fluorouracil sensitive tissue (hypopharyngeal squamous cell carcinoma)

Error report submission