miRTarBase - #MIRT442304


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pre-miRNA Information
pre-miRNA hsa-mir-1303   
Genomic Coordinates chr5: 154685776 - 154685861
Synonyms MIRN1303, hsa-mir-1303, MIR1303
Description Homo sapiens miR-1303 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1303
Sequence 52| UUUAGAGACGGGGUCUUGCUCU |73
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 5 + 154685830 23291724, 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs370437195 6 dbSNP
rs1195001383 7 dbSNP
rs546614687 8 dbSNP
rs762579883 9 dbSNP
rs766041486 10 dbSNP
rs751079975 12 dbSNP
rs888516744 13 dbSNP
rs566454487 14 dbSNP
rs766973220 15 dbSNP
rs1474274822 17 dbSNP
rs753222192 18 dbSNP
rs1230907999 19 dbSNP
rs756552638 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol NEU3   
Synonyms SIAL3
Description neuraminidase 3
Transcript NM_006656   
Expression
Putative miRNA Targets on NEU3
3'UTR of NEU3
(miRNA target sites are highlighted)		 
>NEU3|NM_006656|3'UTR
   1 TTGGCTTAGGACCCAATTTCCATAGATGCAAATGGCAGTTACAGACAGGTTAACAGAAGCTACTGAAGTCTACAGATAAT
  81 CAAAAAACTTAATATTCTGTTCCCTACCTTTTTTCACTTTTCCTCCTCCAAAGAGCAAAATGAAAATTTTGCCTTAGCTA
 161 CTGCAGTGGAAAGAGCACTGAACTAGGAGTTGGAAGACAAGGATGTGGTCCTGGCTCTGCCACTGGCTTGCTTTTGGACC
 241 TTGGATGTGTCACCTGAACTCTCTGGACCTCAGGTTTCCATCTGTAAAATGAGAGTATTGGTTCTAAGATTTCTCATCTT
 321 CTCATCCCTAGGACAAGCATAGTGCCTGCATGCTTCATGATCAGTAAGTCCTGGCTGCATAAAGGACTCTGATGTCAAAA
 401 TGGAAACCAGGGGACTTACCTTTTCACATGACTTACCCCTCATCCGAGTGTGAGGTTACAAGCAGGTGTCATGGCAGGAA
 481 GGAAGACCAGATCTGTATGATTTGTTCCATTTTTAATAACAAAAATATCCACACCCTTTTAATAATGCTCAGTTCTGTAG
 561 GCTCTCTATCCTAGAGGAATTGAGCAAAACAGAAGAATCATGAAGTCTCCTACCTTCTACAGCCTTGTAGTTCTGCTTAC
 641 CTTCTCTTCCTCATCCAGAAAGCATCATTTTCTAGGGAGAACAATGAGAATCTCAATGCCAGTAGTACTGGATAATAGTG
 721 CGTATTGCTTCTGGTGGCATTACCCTGATGATGGGCTGAAGTTCATTTATTAGGGTGGTTCCTGATGGGAAAAGGACATG
 801 GATTAGGACTTTAAAACACTGGACAGAATTTCCCACAGTCTTTGCCCTCAAGGAGTTCACCAGTTTATGGGGCTAGAAGA
 881 GCGAGAAAATTCAAGAAAATAAATGTAGCTGGTGGGAGACTTTGTAGATGTTGGGCTATATGTTGGGGTGATGGTAGCTC
 961 CTGATGTAATTTTCTTAGTTGCATCTTCAATATGCCTGGAGTCGTCTGTCCAAGGCTTGTCCAGGCTTCTGGGTTTCTCT
1041 CAAGTTTGTTTTTCTCAGGATATTGTCCTGGCCCAGCTACTCCTTTACCTGTGAGAAGATCTTCACCATTAGGAAGATCT
1121 CTAGACCCCCAGATCTCAGAATCAGGCCTATTTGTGTAGGCCCATGGAAATCACTACTTGTGAAGTAGAGATGCCTTTTT
1201 GTCTAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            || ||||     ||||||: 
Target 5' ttAGGAAGA-----TCTCTAGa 3'
 1109 - 1125 135.00 -10.80
2 
miRNA  3' ucucGUUCUGGGGCAGAGAUUu 5'
              ||:| ::|| ||| ||| 
Target 5' acctCAGGTTTCCATCTGTAAa 3'
 267 - 288 130.00 -13.20
3 
miRNA  3' ucUCGUUCUGGGGCAGAGAUUu 5'
            || |||  :|  |:||||: 
Target 5' ccAGAAAGCATCATTTTCTAGg 3'
 655 - 676 124.00 -8.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30153037 23 COSMIC
COSN30512934 46 COSMIC
COSN31505840 49 COSMIC
COSN32076294 57 COSMIC
COSN31594487 62 COSMIC
COSN31548009 84 COSMIC
COSN8283640 239 COSMIC
COSN32133342 453 COSMIC
COSN20108505 553 COSMIC
COSN16001932 850 COSMIC
COSN5309109 1155 COSMIC
COSN7019501 1215 COSMIC
COSN23541639 1435 COSMIC
COSN8690630 1547 COSMIC
COSN7052108 2905 COSMIC
COSN21010509 3120 COSMIC
COSN7019502 4068 COSMIC
COSN16283209 4185 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs180878536 1 dbSNP
rs368878155 2 dbSNP
rs779433984 4 dbSNP
rs11236284 6 dbSNP
rs1157734622 7 dbSNP
rs758610145 12 dbSNP
rs1404450132 13 dbSNP
rs534977688 17 dbSNP
rs960876233 23 dbSNP
rs778464108 24 dbSNP
rs558441721 25 dbSNP
rs1224369232 30 dbSNP
rs1251042387 35 dbSNP
rs374055678 37 dbSNP
rs376950327 43 dbSNP
rs937667552 48 dbSNP
rs919348520 58 dbSNP
rs1056133553 62 dbSNP
rs761203622 63 dbSNP
rs116902328 82 dbSNP
rs1295821475 82 dbSNP
rs1036562095 83 dbSNP
rs537024236 90 dbSNP
rs11236285 98 dbSNP
rs1243314054 99 dbSNP
rs753302791 100 dbSNP
rs1378048009 105 dbSNP
rs898001188 108 dbSNP
rs1322864072 116 dbSNP
rs1363151119 117 dbSNP
rs1406308539 118 dbSNP
rs1283367365 123 dbSNP
rs1339385406 124 dbSNP
rs151088237 126 dbSNP
rs141064537 130 dbSNP
rs878919865 133 dbSNP
rs901033099 152 dbSNP
rs1027696883 166 dbSNP
rs1424994708 167 dbSNP
rs543114072 172 dbSNP
rs1367188350 175 dbSNP
rs61353358 181 dbSNP
rs371730784 188 dbSNP
rs762953696 194 dbSNP
rs557205845 195 dbSNP
rs1007550526 204 dbSNP
rs1196866611 206 dbSNP
rs1188304951 214 dbSNP
rs1018899823 227 dbSNP
rs1291763658 232 dbSNP
rs1489879100 244 dbSNP
rs1224738257 249 dbSNP
rs374903235 250 dbSNP
rs1223866759 264 dbSNP
rs966012567 266 dbSNP
rs988452634 267 dbSNP
rs1428098678 271 dbSNP
rs1222282682 281 dbSNP
rs1320694464 290 dbSNP
rs183792751 292 dbSNP
rs968306362 293 dbSNP
rs551138827 295 dbSNP
rs1359268396 296 dbSNP
rs979250497 302 dbSNP
rs1277080492 307 dbSNP
rs1405475245 308 dbSNP
rs1367416104 316 dbSNP
rs926393469 317 dbSNP
rs1301040063 321 dbSNP
rs1374558096 322 dbSNP
rs1457235771 323 dbSNP
rs969001374 338 dbSNP
rs1172827240 352 dbSNP
rs1408491352 384 dbSNP
rs1002423205 391 dbSNP
rs1035265010 393 dbSNP
rs1225883705 399 dbSNP
rs1475650513 407 dbSNP
rs1267412080 419 dbSNP
rs564351865 420 dbSNP
rs116108505 423 dbSNP
rs917573579 434 dbSNP
rs939674202 446 dbSNP
rs1426492659 458 dbSNP
rs1303183462 460 dbSNP
rs1256830787 465 dbSNP
rs1460779936 472 dbSNP
rs549794215 476 dbSNP
rs1347268410 488 dbSNP
rs1037039294 498 dbSNP
rs919476713 500 dbSNP
rs766188419 509 dbSNP
rs984851311 511 dbSNP
rs1299739513 520 dbSNP
rs1440251855 527 dbSNP
rs867896673 531 dbSNP
rs1049213331 533 dbSNP
rs889238595 536 dbSNP
rs1007580277 543 dbSNP
rs1228698025 549 dbSNP
rs3837410 551 dbSNP
rs397809168 551 dbSNP
rs66639556 552 dbSNP
rs1427734811 557 dbSNP
rs563282202 558 dbSNP
rs1176356768 564 dbSNP
rs943340882 566 dbSNP
rs1040384011 567 dbSNP
rs528933589 571 dbSNP
rs933851208 573 dbSNP
rs1292550227 578 dbSNP
rs117567114 581 dbSNP
rs1210016156 607 dbSNP
rs1325076446 611 dbSNP
rs369124831 625 dbSNP
rs1203598440 641 dbSNP
rs1232439086 653 dbSNP
rs758234814 655 dbSNP
rs879095780 657 dbSNP
rs182449193 667 dbSNP
rs1308853446 668 dbSNP
rs1447800315 678 dbSNP
rs766307269 691 dbSNP
rs1182686036 693 dbSNP
rs535202743 697 dbSNP
rs1446333128 703 dbSNP
rs139030107 707 dbSNP
rs1337646899 712 dbSNP
rs904896833 715 dbSNP
rs551584623 721 dbSNP
rs546939302 722 dbSNP
rs1033491975 723 dbSNP
rs959136490 729 dbSNP
rs1302399930 738 dbSNP
rs751491387 744 dbSNP
rs1454729823 745 dbSNP
rs1366102151 752 dbSNP
rs1157312601 760 dbSNP
rs991920838 774 dbSNP
rs917648806 776 dbSNP
rs562131753 784 dbSNP
rs972391851 787 dbSNP
rs919537871 800 dbSNP
rs777839137 815 dbSNP
rs930908553 816 dbSNP
rs1381094837 817 dbSNP
rs994117862 818 dbSNP
rs1049243096 822 dbSNP
rs1199437691 824 dbSNP
rs749319792 825 dbSNP
rs1262456698 835 dbSNP
rs1316418810 835 dbSNP
rs1236534519 838 dbSNP
rs778045036 850 dbSNP
rs1170280473 851 dbSNP
rs186640771 854 dbSNP
rs943514611 856 dbSNP
rs375151804 873 dbSNP
rs1380904619 876 dbSNP
rs556892705 877 dbSNP
rs1236885695 879 dbSNP
rs141499221 883 dbSNP
rs1351616749 887 dbSNP
rs1040456753 895 dbSNP
rs536317095 899 dbSNP
rs976099712 901 dbSNP
rs1165909723 905 dbSNP
rs1446062223 907 dbSNP
rs1254196063 915 dbSNP
rs1366375830 923 dbSNP
rs923230245 924 dbSNP
rs1186180313 927 dbSNP
rs1428602829 936 dbSNP
rs1009992448 939 dbSNP
rs1241008155 940 dbSNP
rs1462528555 942 dbSNP
rs1042387052 943 dbSNP
rs1184116737 943 dbSNP
rs1249811494 945 dbSNP
rs903790680 946 dbSNP
rs1000769083 947 dbSNP
rs553419057 948 dbSNP
rs1292187611 953 dbSNP
rs1224503541 958 dbSNP
rs1417245716 968 dbSNP
rs1357485395 970 dbSNP
rs1183277673 977 dbSNP
rs1228157504 984 dbSNP
rs988439343 991 dbSNP
rs1363907873 992 dbSNP
rs1033565500 1004 dbSNP
rs191752812 1005 dbSNP
rs1399900320 1014 dbSNP
rs1346749922 1024 dbSNP
rs541218334 1031 dbSNP
rs1423165506 1040 dbSNP
rs1013385868 1061 dbSNP
rs1025152296 1083 dbSNP
rs1468936547 1101 dbSNP
rs564315121 1115 dbSNP
rs1374291209 1118 dbSNP
rs961145478 1121 dbSNP
rs1471197450 1122 dbSNP
rs1043478878 1125 dbSNP
rs1477439541 1126 dbSNP
rs1303791659 1129 dbSNP
rs972852261 1130 dbSNP
rs1269544739 1134 dbSNP
rs1201261870 1135 dbSNP
rs1373163121 1148 dbSNP
rs904944321 1153 dbSNP
rs577969691 1154 dbSNP
rs1196589902 1159 dbSNP
rs1341784361 1167 dbSNP
rs543742757 1173 dbSNP
rs778984228 1176 dbSNP
rs1390187094 1177 dbSNP
rs952326670 1181 dbSNP
rs1218118904 1183 dbSNP
rs1309190640 1186 dbSNP
rs1351230032 1193 dbSNP
rs1285760598 1210 dbSNP
rs985023737 1215 dbSNP
rs1261565546 1216 dbSNP
rs1196633746 1218 dbSNP
rs937724156 1234 dbSNP
rs1325419519 1237 dbSNP
rs551828267 1239 dbSNP
rs1167854043 1241 dbSNP
rs1464674889 1243 dbSNP
rs563245510 1248 dbSNP
rs1429829241 1249 dbSNP
rs528897416 1258 dbSNP
rs1479594121 1261 dbSNP
rs993779915 1269 dbSNP
rs1182319166 1272 dbSNP
rs1439726400 1275 dbSNP
rs1197522960 1280 dbSNP
rs1250589275 1281 dbSNP
rs181646652 1285 dbSNP
rs887971416 1288 dbSNP
rs116037764 1314 dbSNP
rs1217977977 1331 dbSNP
rs1430883796 1331 dbSNP
rs528218525 1340 dbSNP
rs551549619 1348 dbSNP
rs1280478100 1361 dbSNP
rs923388528 1374 dbSNP
rs1480566017 1375 dbSNP
rs772388702 1377 dbSNP
rs1017734061 1391 dbSNP
rs4944967 1393 dbSNP
rs1412666276 1394 dbSNP
rs1042808980 1403 dbSNP
rs775856168 1416 dbSNP
rs1471043240 1419 dbSNP
rs536781763 1421 dbSNP
rs1378641051 1442 dbSNP
rs936632761 1443 dbSNP
rs185434675 1451 dbSNP
rs895029360 1452 dbSNP
rs988103668 1456 dbSNP
rs1442294575 1458 dbSNP
rs1285609950 1468 dbSNP
rs1207193232 1473 dbSNP
rs145258712 1483 dbSNP
rs1347559075 1489 dbSNP
rs747458929 1495 dbSNP
rs946586530 1499 dbSNP
rs1238969759 1509 dbSNP
rs1383123541 1514 dbSNP
rs190289880 1517 dbSNP
rs536629892 1536 dbSNP
rs1318907277 1544 dbSNP
rs575150378 1548 dbSNP
rs937794291 1551 dbSNP
rs1157873888 1554 dbSNP
rs1445445384 1565 dbSNP
rs777261762 1567 dbSNP
rs952401681 1569 dbSNP
rs1180146228 1573 dbSNP
rs1251885781 1576 dbSNP
rs1243138708 1577 dbSNP
rs917620724 1580 dbSNP
rs867707276 1588 dbSNP
rs985055201 1604 dbSNP
rs928948741 1615 dbSNP
rs761206586 1617 dbSNP
rs1017821803 1629 dbSNP
rs964925217 1630 dbSNP
rs1291587337 1646 dbSNP
rs1048048348 1647 dbSNP
rs1377795963 1649 dbSNP
rs1270339175 1655 dbSNP
rs976678148 1663 dbSNP
rs1338407045 1665 dbSNP
rs1297296778 1666 dbSNP
rs367951824 1667 dbSNP
rs1490399137 1676 dbSNP
rs923449562 1688 dbSNP
rs764841968 1690 dbSNP
rs1162961820 1691 dbSNP
rs1405047954 1705 dbSNP
rs376030205 1710 dbSNP
rs1006442188 1712 dbSNP
rs566948733 1713 dbSNP
rs978217190 1726 dbSNP
rs762715151 1727 dbSNP
rs1490947209 1736 dbSNP
rs1245404968 1749 dbSNP
rs766217274 1751 dbSNP
rs756239782 1754 dbSNP
rs997622268 1761 dbSNP
rs550974409 1762 dbSNP
rs137962284 1766 dbSNP
rs936663515 1769 dbSNP
rs1010650143 1786 dbSNP
rs1021547783 1789 dbSNP
rs1419227555 1793 dbSNP
rs1291634445 1795 dbSNP
rs538767967 1810 dbSNP
rs1435985506 1819 dbSNP
rs967941756 1826 dbSNP
rs1172560567 1836 dbSNP
rs1427174312 1838 dbSNP
rs1055120760 1846 dbSNP
rs895102904 1875 dbSNP
rs1423465355 1876 dbSNP
rs76467473 1879 dbSNP
rs76177186 1880 dbSNP
rs991947363 1885 dbSNP
rs543706075 1890 dbSNP
rs1367569834 1901 dbSNP
rs1487928726 1903 dbSNP
rs929023903 1908 dbSNP
rs1199905310 1930 dbSNP
rs150412880 1936 dbSNP
rs1047433590 1943 dbSNP
rs149484797 1946 dbSNP
rs1359596873 1954 dbSNP
rs1039273528 1959 dbSNP
rs900697599 1961 dbSNP
rs569410580 1975 dbSNP
rs1374242241 1981 dbSNP
rs1358578494 1994 dbSNP
rs1051894825 2000 dbSNP
rs1243719729 2011 dbSNP
rs1444919198 2012 dbSNP
rs1293288177 2021 dbSNP
rs573175574 2022 dbSNP
rs35887541 2027 dbSNP
rs559123595 2027 dbSNP
rs1214621281 2029 dbSNP
rs1021599828 2030 dbSNP
rs1175753112 2033 dbSNP
rs182043561 2038 dbSNP
rs143975714 2039 dbSNP
rs1408184337 2041 dbSNP
rs1486645910 2059 dbSNP
rs1188594980 2063 dbSNP
rs1236998279 2066 dbSNP
rs1484166172 2066 dbSNP
rs398016681 2066 dbSNP
rs5792678 2066 dbSNP
rs75666557 2080 dbSNP
rs1249061028 2081 dbSNP
rs1254208259 2081 dbSNP
rs1317280897 2082 dbSNP
rs1311275445 2084 dbSNP
rs1238210085 2087 dbSNP
rs1376506825 2090 dbSNP
rs1315766622 2094 dbSNP
rs749262713 2102 dbSNP
rs1444523127 2103 dbSNP
rs976372863 2107 dbSNP
rs1302786583 2113 dbSNP
rs1030974693 2114 dbSNP
rs1362840039 2115 dbSNP
rs1157269175 2117 dbSNP
rs966905270 2125 dbSNP
rs1417456088 2128 dbSNP
rs187891311 2132 dbSNP
rs1187589629 2133 dbSNP
rs1425053870 2135 dbSNP
rs925391638 2138 dbSNP
rs767340412 2139 dbSNP
rs1033998274 2140 dbSNP
rs990843882 2145 dbSNP
rs916572476 2149 dbSNP
rs949384937 2150 dbSNP
rs1343592706 2167 dbSNP
rs538918181 2168 dbSNP
rs565104958 2171 dbSNP
rs530996349 2173 dbSNP
rs959277449 2174 dbSNP
rs550792172 2177 dbSNP
rs1383234938 2179 dbSNP
rs191838367 2180 dbSNP
rs1450332280 2182 dbSNP
rs929835981 2183 dbSNP
rs992395729 2186 dbSNP
rs1048697289 2190 dbSNP
rs1359427776 2195 dbSNP
rs1356436626 2201 dbSNP
rs184124472 2206 dbSNP
rs370155301 2207 dbSNP
rs1039397900 2209 dbSNP
rs900863689 2210 dbSNP
rs1209001731 2211 dbSNP
rs1269137104 2212 dbSNP
rs1461191110 2214 dbSNP
rs1182282142 2217 dbSNP
rs1239656820 2218 dbSNP
rs566757011 2219 dbSNP
rs542644045 2220 dbSNP
rs1030590424 2221 dbSNP
rs1228274647 2225 dbSNP
rs1320573200 2230 dbSNP
rs1405920981 2230 dbSNP
rs967356996 2239 dbSNP
rs975015027 2251 dbSNP
rs999736838 2253 dbSNP
rs188923308 2254 dbSNP
rs958139238 2265 dbSNP
rs1468101852 2266 dbSNP
rs990917479 2271 dbSNP
rs1052366143 2272 dbSNP
rs148660148 2277 dbSNP
rs1338465965 2284 dbSNP
rs916643955 2285 dbSNP
rs1340932028 2287 dbSNP
rs1450036374 2293 dbSNP
rs970756563 2298 dbSNP
rs569408807 2305 dbSNP
rs982489707 2306 dbSNP
rs1374937025 2308 dbSNP
rs141272961 2314 dbSNP
rs556921030 2315 dbSNP
rs1048243199 2330 dbSNP
rs1320977307 2333 dbSNP
rs1202103912 2335 dbSNP
rs1033637973 2336 dbSNP
rs909730623 2342 dbSNP
rs1328926008 2344 dbSNP
rs1300177622 2355 dbSNP
rs1013461344 2356 dbSNP
rs1401842180 2359 dbSNP
rs942510428 2360 dbSNP
rs867486604 2362 dbSNP
rs78205254 2363 dbSNP
rs772534580 2365 dbSNP
rs1174072048 2368 dbSNP
rs552447162 2373 dbSNP
rs1179491946 2386 dbSNP
rs1441817746 2387 dbSNP
rs1204484528 2392 dbSNP
rs560701567 2396 dbSNP
rs1198113324 2410 dbSNP
rs1231224241 2418 dbSNP
rs1473648322 2434 dbSNP
rs1281350645 2435 dbSNP
rs1199028609 2440 dbSNP
rs983226390 2443 dbSNP
rs1310544648 2449 dbSNP
rs1016002329 2453 dbSNP
rs370921014 2455 dbSNP
rs544641096 2458 dbSNP
rs1445446405 2462 dbSNP
rs974398320 2489 dbSNP
rs570506598 2491 dbSNP
rs958211030 2496 dbSNP
rs933586421 2502 dbSNP
rs1401196700 2503 dbSNP
rs746759514 2504 dbSNP
rs1012382504 2507 dbSNP
rs1378732149 2507 dbSNP
rs1023735317 2524 dbSNP
rs1402685064 2525 dbSNP
rs946201948 2529 dbSNP
rs746042401 2538 dbSNP
rs904610446 2539 dbSNP
rs1442394044 2542 dbSNP
rs1326836793 2543 dbSNP
rs1355767273 2551 dbSNP
rs937395620 2553 dbSNP
rs1056200320 2557 dbSNP
rs1356422002 2570 dbSNP
rs1285487467 2573 dbSNP
rs982175234 2593 dbSNP
rs1357980844 2597 dbSNP
rs895790387 2598 dbSNP
rs1409831078 2602 dbSNP
rs1302003034 2605 dbSNP
rs1026049594 2609 dbSNP
rs1343197557 2610 dbSNP
rs951382765 2613 dbSNP
rs1013932003 2614 dbSNP
rs1401620051 2614 dbSNP
rs373375850 2621 dbSNP
rs531039573 2621 dbSNP
rs1158256695 2627 dbSNP
rs886295804 2637 dbSNP
rs1416019144 2643 dbSNP
rs564618823 2644 dbSNP
rs1161590633 2648 dbSNP
rs1472730688 2658 dbSNP
rs984020056 2662 dbSNP
rs909761642 2663 dbSNP
rs530568317 2665 dbSNP
rs544392301 2666 dbSNP
rs200762153 2674 dbSNP
rs1004714785 2675 dbSNP
rs1214486343 2677 dbSNP
rs758634202 2677 dbSNP
rs1291342145 2685 dbSNP
rs1226148274 2689 dbSNP
rs922416405 2690 dbSNP
rs561334011 2693 dbSNP
rs1205893678 2694 dbSNP
rs1268296732 2699 dbSNP
rs1041410691 2707 dbSNP
rs1338135600 2711 dbSNP
rs902861795 2719 dbSNP
rs935630560 2721 dbSNP
rs530372214 2723 dbSNP
rs1054044091 2724 dbSNP
rs1437435694 2728 dbSNP
rs1351861240 2737 dbSNP
rs1321630497 2739 dbSNP
rs1404846826 2740 dbSNP
rs1424895960 2744 dbSNP
rs1173441228 2749 dbSNP
rs963131206 2752 dbSNP
rs192127035 2774 dbSNP
rs747370546 2780 dbSNP
rs1012457685 2781 dbSNP
rs1248097758 2786 dbSNP
rs1391876708 2797 dbSNP
rs1029089718 2811 dbSNP
rs1258214595 2824 dbSNP
rs373977114 2830 dbSNP
rs1430358076 2833 dbSNP
rs1316045793 2835 dbSNP
rs1301942974 2836 dbSNP
rs1219621987 2837 dbSNP
rs1369921997 2839 dbSNP
rs1273312366 2842 dbSNP
rs1440520252 2846 dbSNP
rs954390590 2848 dbSNP
rs988154589 2848 dbSNP
rs769112912 2849 dbSNP
rs1363209492 2859 dbSNP
rs906643624 2871 dbSNP
rs1004047290 2880 dbSNP
rs147423401 2895 dbSNP
rs1177151574 2900 dbSNP
rs1025702348 2915 dbSNP
rs184722939 2916 dbSNP
rs967555773 2921 dbSNP
rs1189093027 2928 dbSNP
rs552631516 2929 dbSNP
rs1238233287 2937 dbSNP
rs1200013260 2938 dbSNP
rs76936631 2941 dbSNP
rs1250698890 2942 dbSNP
rs1210491459 2954 dbSNP
rs926087159 2973 dbSNP
rs1016839217 2977 dbSNP
rs1268804293 2980 dbSNP
rs1344881216 2982 dbSNP
rs963926271 2983 dbSNP
rs1055852769 2984 dbSNP
rs1444658999 2987 dbSNP
rs975240408 2996 dbSNP
rs1303919151 2999 dbSNP
rs1468087628 3004 dbSNP
rs1357749561 3006 dbSNP
rs1173456224 3009 dbSNP
rs922414564 3024 dbSNP
rs1433666392 3032 dbSNP
rs592823 3037 dbSNP
rs1179901534 3041 dbSNP
rs977593418 3044 dbSNP
rs1249278433 3050 dbSNP
rs886348028 3051 dbSNP
rs1291094273 3052 dbSNP
rs7483351 3057 dbSNP
rs935661680 3058 dbSNP
rs1209926662 3059 dbSNP
rs1354600336 3059 dbSNP
rs1268235417 3091 dbSNP
rs772808860 3095 dbSNP
rs762318696 3098 dbSNP
rs1238318809 3112 dbSNP
rs1316406111 3121 dbSNP
rs1439677 3122 dbSNP
rs996358718 3128 dbSNP
rs187000494 3131 dbSNP
rs1312615452 3132 dbSNP
rs1249691920 3136 dbSNP
rs1400999629 3136 dbSNP
rs1360707314 3139 dbSNP
rs1160073949 3141 dbSNP
rs1451264772 3144 dbSNP
rs1362678663 3146 dbSNP
rs1164923625 3150 dbSNP
rs1449967736 3155 dbSNP
rs948268981 3170 dbSNP
rs552978555 3171 dbSNP
rs1459055395 3176 dbSNP
rs1186885782 3181 dbSNP
rs572832460 3182 dbSNP
rs906710923 3191 dbSNP
rs1488486043 3196 dbSNP
rs538246957 3201 dbSNP
rs1214683444 3202 dbSNP
rs1485690839 3217 dbSNP
rs1266054852 3218 dbSNP
rs1026156369 3224 dbSNP
rs1247128872 3229 dbSNP
rs1320379382 3230 dbSNP
rs1383727197 3232 dbSNP
rs1293231669 3238 dbSNP
rs1398622015 3239 dbSNP
rs1342770831 3243 dbSNP
rs1318907526 3248 dbSNP
rs1380149108 3257 dbSNP
rs996742442 3259 dbSNP
rs887182588 3264 dbSNP
rs1293534539 3267 dbSNP
rs1436437598 3270 dbSNP
rs191817721 3278 dbSNP
rs184168324 3279 dbSNP
rs1381229294 3287 dbSNP
rs963959347 3302 dbSNP
rs1425475878 3305 dbSNP
rs1190784557 3312 dbSNP
rs1428097085 3313 dbSNP
rs1268326240 3314 dbSNP
rs1211659930 3315 dbSNP
rs34821152 3322 dbSNP
rs996732090 3327 dbSNP
rs1272698451 3343 dbSNP
rs926134725 3351 dbSNP
rs958887105 3359 dbSNP
rs1276646917 3361 dbSNP
rs992005082 3363 dbSNP
rs1325427886 3366 dbSNP
rs1247007619 3369 dbSNP
rs563825326 3375 dbSNP
rs955386498 3379 dbSNP
rs977248857 3380 dbSNP
rs1324685658 3388 dbSNP
rs1466029700 3391 dbSNP
rs924390828 3392 dbSNP
rs1402408832 3394 dbSNP
rs1165873223 3398 dbSNP
rs1461308444 3406 dbSNP
rs572941414 3412 dbSNP
rs113759989 3413 dbSNP
rs915570079 3415 dbSNP
rs948342361 3422 dbSNP
rs774200791 3423 dbSNP
rs940602213 3424 dbSNP
rs928202760 3430 dbSNP
rs1371398204 3435 dbSNP
rs1037610120 3436 dbSNP
rs899022570 3438 dbSNP
rs543976406 3443 dbSNP
rs996022646 3447 dbSNP
rs1050635548 3464 dbSNP
rs939547767 3469 dbSNP
rs1302011916 3470 dbSNP
rs1187579967 3471 dbSNP
rs890221019 3478 dbSNP
rs1047224067 3488 dbSNP
rs887214725 3489 dbSNP
rs561505270 3493 dbSNP
rs1402607107 3496 dbSNP
rs1005579301 3498 dbSNP
rs1038388818 3499 dbSNP
rs899863106 3519 dbSNP
rs966986292 3528 dbSNP
rs1394740975 3539 dbSNP
rs556521758 3543 dbSNP
rs1441605227 3544 dbSNP
rs575033972 3549 dbSNP
rs1391276173 3558 dbSNP
rs1181683504 3564 dbSNP
rs540855474 3568 dbSNP
rs560601243 3573 dbSNP
rs1258638807 3579 dbSNP
rs1209213863 3580 dbSNP
rs1345208708 3581 dbSNP
rs1458033789 3598 dbSNP
rs1279181642 3604 dbSNP
rs1240499117 3605 dbSNP
rs1355228225 3614 dbSNP
rs1336497771 3617 dbSNP
rs116724296 3625 dbSNP
rs189549524 3641 dbSNP
rs1313491262 3644 dbSNP
rs991663213 3648 dbSNP
rs562877963 3649 dbSNP
rs1374684584 3653 dbSNP
rs1290514609 3659 dbSNP
rs1031492619 3665 dbSNP
rs1330092244 3674 dbSNP
rs759234463 3675 dbSNP
rs1405857066 3687 dbSNP
rs1158088567 3697 dbSNP
rs1473386737 3707 dbSNP
rs957139752 3715 dbSNP
rs1370705641 3717 dbSNP
rs1186181012 3731 dbSNP
rs1485543968 3734 dbSNP
rs989913580 3746 dbSNP
rs1264435163 3748 dbSNP
rs1202736079 3750 dbSNP
rs982836282 3752 dbSNP
rs1261048367 3753 dbSNP
rs1484171954 3762 dbSNP
rs1281463079 3778 dbSNP
rs908573309 3781 dbSNP
rs1356881210 3788 dbSNP
rs144576762 3794 dbSNP
rs973355968 3799 dbSNP
rs776602433 3800 dbSNP
rs969717984 3810 dbSNP
rs180987462 3819 dbSNP
rs931855765 3821 dbSNP
rs1343681080 3827 dbSNP
rs568576612 3837 dbSNP
rs1416855947 3842 dbSNP
rs114086309 3843 dbSNP
rs890259398 3845 dbSNP
rs1475192835 3848 dbSNP
rs939599607 3852 dbSNP
rs1041437342 3853 dbSNP
rs1476167121 3856 dbSNP
rs1047706230 3860 dbSNP
rs1214387352 3866 dbSNP
rs185622800 3869 dbSNP
rs1376321523 3875 dbSNP
rs367608701 3876 dbSNP
rs941508585 3877 dbSNP
rs1278556617 3881 dbSNP
rs1038420475 3882 dbSNP
rs1033259833 3886 dbSNP
rs542821260 3902 dbSNP
rs147876881 3904 dbSNP
rs1437542688 3905 dbSNP
rs139276687 3909 dbSNP
rs1051101356 3911 dbSNP
rs1461336064 3913 dbSNP
rs1401703580 3917 dbSNP
rs1024495862 3919 dbSNP
rs1408588575 3921 dbSNP
rs369053866 3921 dbSNP
rs376601996 3925 dbSNP
rs1478179395 3934 dbSNP
rs998771817 3938 dbSNP
rs750508605 3947 dbSNP
rs1467923496 3953 dbSNP
rs1258643752 3956 dbSNP
rs1031566401 3970 dbSNP
rs1206608192 3989 dbSNP
rs1309953186 3992 dbSNP
rs1272077726 4011 dbSNP
rs1220016953 4013 dbSNP
rs538555651 4015 dbSNP
rs1015683008 4016 dbSNP
rs1373501727 4023 dbSNP
rs962737046 4031 dbSNP
rs1440270388 4037 dbSNP
rs892974669 4038 dbSNP
rs1011377882 4039 dbSNP
rs1300404965 4048 dbSNP
rs1440698023 4050 dbSNP
rs1022753874 4060 dbSNP
rs969829647 4061 dbSNP
rs981537809 4062 dbSNP
rs1035348432 4070 dbSNP
rs1453251571 4079 dbSNP
rs1238326576 4091 dbSNP
rs1178850128 4099 dbSNP
rs558083236 4100 dbSNP
rs1232046684 4105 dbSNP
rs1210601174 4107 dbSNP
rs1350243122 4110 dbSNP
rs758541213 4116 dbSNP
rs71466368 4117 dbSNP
rs71466369 4119 dbSNP
rs1233919512 4120 dbSNP
rs983072469 4127 dbSNP
rs1313792552 4133 dbSNP
rs71036027 4135 dbSNP
rs10899054 4137 dbSNP
rs944526649 4140 dbSNP
rs1222515571 4145 dbSNP
rs1373291285 4147 dbSNP
rs941539842 4156 dbSNP
rs189477870 4162 dbSNP
rs1417022344 4165 dbSNP
rs685116 4166 dbSNP
rs932735939 4174 dbSNP
rs181547211 4175 dbSNP
rs891143289 4187 dbSNP
rs934636099 4200 dbSNP
rs1160689452 4216 dbSNP
rs540945767 4222 dbSNP
rs1490074282 4230 dbSNP
rs1196900066 4232 dbSNP
rs1182173626 4236 dbSNP
rs540467620 4240 dbSNP
rs894110063 4250 dbSNP
rs1013196909 4256 dbSNP
rs560705038 4259 dbSNP
rs1435346170 4260 dbSNP
rs1488752257 4271 dbSNP
rs1053030199 4280 dbSNP
rs893048990 4299 dbSNP
rs1213740708 4308 dbSNP
rs1316781241 4309 dbSNP
rs1314043862 4321 dbSNP
rs755257142 4326 dbSNP
rs1177247596 4336 dbSNP
rs1046385720 4338 dbSNP
rs1011453475 4354 dbSNP
rs1413738598 4371 dbSNP
rs1385265926 4372 dbSNP
rs764185732 4385 dbSNP
rs1451011643 4390 dbSNP
rs1428408178 4396 dbSNP
rs907406411 4402 dbSNP
rs562274385 4407 dbSNP
rs1476173789 4414 dbSNP
rs1415329558 4416 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucucguucuggggcaGAGAUUu 5'
                         |||||| 
Target 5' -----------uuggCUCUAAa 3'
 		1 - 11
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000294064.4 | 3UTR | UUGGCUCUAAAUCAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.65 2.9e-4 0.726 3.0e-5 24 Click to see details
GSE38226 Liver fibrosis 0.411 3.2e-2 0.518 8.1e-3 21 Click to see details
GSE32688 Pancreatic cancer 0.209 1.3e-1 0.223 1.1e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.156 2.3e-1 -0.116 2.9e-1 24 Click to see details
GSE28260 Renal cortex and medulla 0.128 3.4e-1 -0.038 4.5e-1 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.052 4.0e-1 -0.028 4.5e-1 25 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
186 hsa-miR-1303 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035871 SOAT1 sterol O-acyltransferase 1 1 1
MIRT035872 FHOD3 formin homology 2 domain containing 3 1 1
MIRT035873 RPL7A ribosomal protein L7a 1 1
MIRT035874 NCAPD2 non-SMC condensin I complex subunit D2 1 1
MIRT035875 RPS8 ribosomal protein S8 1 1
MIRT035876 AHNAK AHNAK nucleoprotein 1 1
MIRT035877 ACTB actin beta 1 1
MIRT035878 DEF8 differentially expressed in FDCP 8 homolog 1 1
MIRT035879 MET MET proto-oncogene, receptor tyrosine kinase 1 1
MIRT035880 MED13 mediator complex subunit 13 1 1
MIRT035881 FAT3 FAT atypical cadherin 3 1 1
MIRT035882 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 1 1
MIRT035883 RPS16 ribosomal protein S16 1 1
MIRT035884 CDK6 cyclin dependent kinase 6 1 1
MIRT035885 GEMIN5 gem nuclear organelle associated protein 5 1 1
MIRT035886 PITRM1 pitrilysin metallopeptidase 1 1 1
MIRT035887 PRRC2A proline rich coiled-coil 2A 1 1
MIRT035888 KIAA0226 RUN and cysteine rich domain containing beclin 1 interacting protein 1 1
MIRT035889 MLLT6 MLLT6, PHD finger containing 1 1
MIRT035890 EIF3I eukaryotic translation initiation factor 3 subunit I 1 1
MIRT035891 FASN fatty acid synthase 1 1
MIRT035892 LEPREL4 prolyl 3-hydroxylase family member 4 (non-enzymatic) 1 1
MIRT035893 HSCB HscB mitochondrial iron-sulfur cluster cochaperone 1 1
MIRT035894 PSME4 proteasome activator subunit 4 1 1
MIRT035895 FRS2 fibroblast growth factor receptor substrate 2 1 1
MIRT035896 ZNF264 zinc finger protein 264 1 1
MIRT035897 HYLS1 HYLS1, centriolar and ciliogenesis associated 1 1
MIRT035898 USP54 ubiquitin specific peptidase 54 1 1
MIRT035899 L1TD1 LINE1 type transposase domain containing 1 1 1
MIRT035900 OR51E2 olfactory receptor family 51 subfamily E member 2 1 1
MIRT053762 CLDN18 claudin 18 3 1
MIRT060730 RPS3 ribosomal protein S3 2 2
MIRT083986 RAB22A RAB22A, member RAS oncogene family 2 2
MIRT098550 TBPL1 TATA-box binding protein like 1 2 6
MIRT134983 TWF1 twinfilin actin binding protein 1 2 4
MIRT136956 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT222065 PURB purine rich element binding protein B 2 2
MIRT239574 UBN2 ubinuclein 2 2 4
MIRT261820 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT264698 C11ORF57 chromosome 11 open reading frame 57 2 4
MIRT308476 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT377481 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 2 2
MIRT442304 NEU3 neuraminidase 3 2 2
MIRT446083 SLC30A10 solute carrier family 30 member 10 2 2
MIRT449606 PRPF4 pre-mRNA processing factor 4 2 2
MIRT453767 NUCB1 nucleobindin 1 2 10
MIRT455603 SRSF3 serine and arginine rich splicing factor 3 2 2
MIRT455913 KIF2C kinesin family member 2C 2 2
MIRT460091 ZYG11B zyg-11 family member B, cell cycle regulator 2 4
MIRT460866 UBE2S ubiquitin conjugating enzyme E2 S 2 2
MIRT461339 NUP133 nucleoporin 133 2 2
MIRT463769 YOD1 YOD1 deubiquitinase 2 2
MIRT466368 THAP1 THAP domain containing 1 2 4
MIRT467168 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT468703 SDHD succinate dehydrogenase complex subunit D 2 2
MIRT469122 RNF126 ring finger protein 126 2 2
MIRT472426 NCBP2 nuclear cap binding protein subunit 2 2 4
MIRT479420 CDKN1B cyclin dependent kinase inhibitor 1B 2 8
MIRT484260 FAM177A1 family with sequence similarity 177 member A1 2 2
MIRT485468 IL6ST interleukin 6 signal transducer 2 10
MIRT490237 H2AFZ H2A histone family member Z 2 6
MIRT491002 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT492127 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT499169 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT499825 PCSK9 proprotein convertase subtilisin/kexin type 9 2 8
MIRT501794 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT503441 GINS4 GINS complex subunit 4 2 4
MIRT503688 MAVS mitochondrial antiviral signaling protein 2 5
MIRT506926 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT511430 HOXA10 homeobox A10 2 6
MIRT512415 LAYN layilin 2 4
MIRT513791 NIPAL3 NIPA like domain containing 3 2 4
MIRT516163 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 2 4
MIRT516513 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516915 HINFP histone H4 transcription factor 2 2
MIRT517102 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT517350 NLRP9 NLR family pyrin domain containing 9 2 2
MIRT518019 ABHD15 abhydrolase domain containing 15 2 2
MIRT520945 SRSF10 serine and arginine rich splicing factor 10 2 2
MIRT525250 RNF213 ring finger protein 213 2 2
MIRT530634 PPIC peptidylprolyl isomerase C 2 4
MIRT530671 CHRNB1 cholinergic receptor nicotinic beta 1 subunit 2 4
MIRT531563 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT538205 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT538419 COLEC10 collectin subfamily member 10 2 2
MIRT541964 ZNF485 zinc finger protein 485 2 2
MIRT543088 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT543257 ZNF662 zinc finger protein 662 2 2
MIRT543589 KIAA1549 KIAA1549 2 2
MIRT543955 RNF20 ring finger protein 20 2 2
MIRT544043 C9orf64 chromosome 9 open reading frame 64 2 4
MIRT548064 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548240 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT548442 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548623 DAZAP1 DAZ associated protein 1 2 4
MIRT548770 COLEC12 collectin subfamily member 12 2 2
MIRT549506 HDDC2 HD domain containing 2 2 4
MIRT551924 AKAP8 A-kinase anchoring protein 8 2 4
MIRT555656 PGRMC1 progesterone receptor membrane component 1 2 2
MIRT556286 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT557012 HOXD13 homeobox D13 2 4
MIRT563907 CLSPN claspin 2 2
MIRT565527 SON SON DNA binding protein 2 2
MIRT568000 COMMD2 COMM domain containing 2 2 2
MIRT569831 PLA2G16 phospholipase A2 group XVI 2 4
MIRT573905 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT616589 KLHL9 kelch like family member 9 2 2
MIRT617137 ZNF556 zinc finger protein 556 2 2
MIRT617400 API5 apoptosis inhibitor 5 2 2
MIRT617455 CCS copper chaperone for superoxide dismutase 2 2
MIRT617799 ZNF793 zinc finger protein 793 2 2
MIRT618190 MACC1 MACC1, MET transcriptional regulator 2 2
MIRT618303 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase 2 2
MIRT618329 ZNF813 zinc finger protein 813 2 2
MIRT618820 PHF20 PHD finger protein 20 2 2
MIRT619153 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT619530 ZNF708 zinc finger protein 708 2 2
MIRT619849 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 2 2
MIRT620806 SLC26A2 solute carrier family 26 member 2 2 2
MIRT621312 YIPF4 Yip1 domain family member 4 2 2
MIRT621358 GUCA1B guanylate cyclase activator 1B 2 2
MIRT621366 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) 2 2
MIRT621547 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT621883 TAOK1 TAO kinase 1 2 2
MIRT622451 RNF19B ring finger protein 19B 2 2
MIRT623404 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT623587 IPO9 importin 9 2 2
MIRT623974 FAM63A MINDY lysine 48 deubiquitinase 1 2 2
MIRT624086 DPP8 dipeptidyl peptidase 8 2 2
MIRT624108 DNAH10OS dynein axonemal heavy chain 10 opposite strand 2 2
MIRT632486 RNF8 ring finger protein 8 2 2
MIRT634057 PLIN3 perilipin 3 2 2
MIRT634657 GDE1 glycerophosphodiester phosphodiesterase 1 2 2
MIRT640682 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641242 CENPN centromere protein N 2 2
MIRT642260 ZNF677 zinc finger protein 677 2 2
MIRT642954 RELA RELA proto-oncogene, NF-kB subunit 2 2
MIRT644326 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT644632 ICA1L islet cell autoantigen 1 like 2 2
MIRT645721 POLR3A RNA polymerase III subunit A 2 2
MIRT647850 LYPLA1 lysophospholipase I 2 2
MIRT649281 NEK8 NIMA related kinase 8 2 2
MIRT650038 VHL von Hippel-Lindau tumor suppressor 2 2
MIRT650354 RRP36 ribosomal RNA processing 36 2 2
MIRT651144 ZNF384 zinc finger protein 384 2 2
MIRT651778 UTP6 UTP6, small subunit processome component 2 2
MIRT652576 TLCD2 TLC domain containing 2 2 2
MIRT654621 PTPRJ protein tyrosine phosphatase, receptor type J 2 2
MIRT656023 MYO5A myosin VA 2 2
MIRT656105 MSRB3 methionine sulfoxide reductase B3 2 2
MIRT657749 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT657924 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT658848 DUSP19 dual specificity phosphatase 19 2 2
MIRT659100 DENND6A DENN domain containing 6A 2 2
MIRT659153 DCX doublecortin 2 2
MIRT660870 ADRBK2 G protein-coupled receptor kinase 3 2 2
MIRT661941 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT663577 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT664625 WDPCP WD repeat containing planar cell polarity effector 2 4
MIRT666562 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT669992 GPR156 G protein-coupled receptor 156 2 4
MIRT670445 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670853 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671942 SPPL3 signal peptide peptidase like 3 2 2
MIRT674269 LMOD3 leiomodin 3 2 2
MIRT674424 MIOX myo-inositol oxygenase 2 4
MIRT674982 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) 2 2
MIRT675038 BACE2 beta-site APP-cleaving enzyme 2 2 4
MIRT675309 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT675641 TTPAL alpha tocopherol transfer protein like 2 2
MIRT688688 CPS1 carbamoyl-phosphate synthase 1 2 2
MIRT689369 ZNF101 zinc finger protein 101 2 2
MIRT689605 AKAP6 A-kinase anchoring protein 6 2 2
MIRT691715 LARS leucyl-tRNA synthetase 2 2
MIRT695473 TRAT1 T-cell receptor associated transmembrane adaptor 1 2 2
MIRT695530 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695878 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696586 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 2 2
MIRT703007 HEATR5A HEAT repeat containing 5A 2 2
MIRT707942 PHKA1 phosphorylase kinase regulatory subunit alpha 1 2 2
MIRT709765 GPR183 G protein-coupled receptor 183 2 2
MIRT710332 ZNF669 zinc finger protein 669 2 2
MIRT713249 ZFP30 ZFP30 zinc finger protein 2 2
MIRT716613 RBM18 RNA binding motif protein 18 2 2
MIRT733414 BAG2 BCL2 associated athanogene 2 2 0
MIRT756135 THSD7A thrombospondin type 1 domain containing 7A 3 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (RKO)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1303 Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor cell line (882R-NC, 882R-OE, 882R-KD)
hsa-miR-1303 Fulvestrant 17756771 NSC719276 approved sensitive High Breast Cancer cell line (MCF-7)
hsa-miR-1303 Rituximab sensitive High Diffuse Large B-Cell Lymphoma cell line (DB, NU-DHL-1, NU-DUL-1, MC-116, SU-DHL-4, SU-DHL-5, FARAGE, HBL-1, OCI-Ly3, OCI-Ly7, OCI-Ly8, OCI-Ly19, RIVA, SU-DHL-8, U2932)
hsa-miR-1303 Etoposide 36462 NSC141540 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vinorelbine 44424639 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Vincristine 5978 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant High Colorectal Cancer cell line (HCT8)
hsa-mir-1303 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-1303 Topotecan 60699 NSC609699 approved resistant cell line (W1)
hsa-mir-1303 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-1303 Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1303 Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-1303 Palbociclib 5330286 NSC758247 approved resistant tissue (breast cancer)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1303 Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-1303 Paclitaxel 36314 NSC125973 approved resistant cell line (BAS)
hsa-miR-1303 Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved resistant cell line (CP20)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-1303 Oxaliplatin 6857599 NSC266046 approved sensitive cell line (IGROV-1)
hsa-miR-1303 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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