miRTarBase - #MIRT442365


—
pre-miRNA Information
pre-miRNA hsa-mir-548ap   
Genomic Coordinates chr15: 85825635 - 85825730
Description Homo sapiens miR-548ap stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548ap-3p
Sequence 58| AAAAACCACAAUUACUUUU |76
Evidence Not_experimental
Experiments
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 8 15 + 85825699 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1391959840 4 dbSNP
rs1164149363 6 dbSNP
rs150751643 7 dbSNP
rs1414633461 15 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZC3H12C   
Synonyms MCPIP3
Description zinc finger CCCH-type containing 12C
Transcript NM_033390   
Expression
Putative miRNA Targets on ZC3H12C
3'UTR of ZC3H12C
(miRNA target sites are highlighted)		 
>ZC3H12C|NM_033390|3'UTR
   1 AAGATGATGCATCTTTGTGGTGTTTAGTAGTTTTTTGTTCAGCTCAAATGCTGAGGGAGGTTTGCTACAATAGCACATGT
  81 GATCTCCTTCTCAGCAAGGAGGTTATATAGTATCCATTTATGTGAAATACTGTATCATGGAATCTGTATGTATAGCCCCA
 161 CATGGTGGAAGTATCACGGGATTGCTTTACATTTAAACTTTTTTTTTTTAACATTTCCTTTTTAAAGCTATATCCTTGGC
 241 TGGAAATTTTTCCAGTTTGATTTAATAGATGTATCTGTGATCTTTGATATTAATCTTTGGTGCATCAGGGGTTTATATGC
 321 AGCACTTTTTATCCTTGTTTTGTGTTTTATTAACTTGGTGTTTGTCTATCAATTGCAAGCAATTACAATACCTTCAGAAT
 401 GTGGGACATTTGACTAGACCTAGCAAACTGTTTTTTCGAGCCAAGCTTAGTTAGACTCTTTTACAGCTTTTTAAGTTATT
 481 TTTATTTGGGGAAAGTGGGCTTCTTTGTGCTATAATCATTATTTATAGAAACAAAGTTATACTACAGCACTGACTTTATA
 561 TTTTAAACAGAATGTAAGTTACCAGTTTTATGTTGAAATGTGTTACAGTATATATATATTAGAATGATTTACAATATGGC
 641 ACTTTTCGATGTGTTATTTTTGTTTGGATTTTTTTTTCTGTTAAGAAATTAGTTAATTTAATATGGTCAATTTAAAAGAA
 721 AGCAGATGCAATCAATGGAAAAATGTTTCCATTTTTTAAAAATGAATAAGGCAAAAGCTGTAACTGTTACAGGTTAGAGC
 801 TTTGTTATCCAGCTATGATGTGCTTCTTGACAGTAGAAGTGGAATTGAATTCCTAGATTTCCATTAACCTGTATTTTTAA
 881 TATGTCTGTCTTTTTGTTTTGGGGCACAACAATACTGGATAAAATAACCCTTTCACAGCACTTGCCTGTTTTTAATGAAT
 961 CTAATTATTCACAATGCAACTTTTATATTTAACATACTCTTTAGCTTTCCTGCTATTTATCAAGGCTGGCCTGAGGTGGG
1041 TTTATGTGTTGAGGTTATGCAACATTTCTTGATACTGCACTATAGAGAAATGGTGATGGAGGAGTTGTAAATGGTAACTT
1121 AAAATTTTTGTAAGATATTGTATATTTTCCATTTTCCTGAAGGTAGTTTTCTTGGGGGGGCCTGTTATATTATTAAGGCC
1201 AGACTCTTGCCACAAATAGTGTAGTTTTAGATACAGACTAAGGTCTGTTCTAGTATTAGTAAGGGATATTTCTGGTTTCA
1281 AAGTCATGGGTTTTGCTAGTGGTGAATACATTTCTGCGGAGTAGAAGATAGATTTTGCAGTCAGTGGCAGACAGTTGTGT
1361 GATTGACATCACTTGACTGTTGCGTCCAGGTTTTGAATTGTACTTCACGTAACAGATGCATTCAGATCTTTTTCTGTAGT
1441 CTGCTTAGATGCCCTGGCTATTCTGATTATCCTACATGCTACAGTTTGAAGTGAAGCCCTGAAAAACCAGAAAGTACCTT
1521 TTACTGTTGATACAAATTGTATCTTTTTAACTATAAGAACTATTTTGATTTGTAGATCTAGTTAAAACACAAGTATGTAA
1601 CTATGATTAGACTTTTGGGCAACATTTTATCCCTTATTTAAATACAAATTTTTAAAGTAAAATTGAGGTCTAGAATAGAT
1681 TAGAAAATAAAAATAACAATTTAGATAAATAGAAATGTCTGTCTTAGTTTTATATAATATATTAAAACACAGTAAATAAA
1761 TTTATTGGCATTTTCTTTCTCCTAAAACTTACCTAGTGTGAACTTAAAATAAAGGTAAAATGCTGCCTGAAAATAATGTC
1841 CAAGCACCTTTGACTAGGATAACATTTTCACTACTTGTGTGACACTGTGTGTTGCACGAAGTAGGATTTGGGTATACAGT
1921 AAATGCTTCTAAAAGGCATTGTGCATATTGACATAACCAATAATCTGAACCGTGTTCAGCAAACTTAATTCAGGAAAGTG
2001 GTATTCTACACAATTATTGCTGTTGTGTTTGAAATGAGTGTGGCACTCATCTGTATCCAGAAATAATATGGGTGAGGCCA
2081 CACAACCCATTCTGAGTGGTGTCTGTCTGAAAGCAACCCTACTCGCATGTGAAATTGTTCTCCTTGATTTGGTCACTATA
2161 AAGCAAGTTTAAATGTAGAGGCTAACTCAGTGCCAAAAACAGGGTTACAAATGTGTAGTATCTTTTATTTTAGTCATATT
2241 CTAAGACTTCTTTTTAGTATGAAATCACTTTTAAATTATACATGTAGGTTTTGCTTCCATTTTCTTCATTTTACCATTTT
2321 AATTATTTGAACATTCGCCAAATTTTACATTTATTTAAATGAGATCTTAGGTGAGATGTGTGTGACACTTTGAATTTGAC
2401 CTTCTTGTGTTATTAGCTGACTATTTGTCATTGCCTCATGGATTTTAAATTATGGGAAAATAGTGTAGCCAGCTGCCACC
2481 TCTACTGAAGTGAGTAGCTCTGAACTACCCACACTAAATCCTTCAGTGTAATTAATTATGAGTTTAAAAATAGCAGTTTT
2561 CTTATGTGAAGAGGACAGTTTGTCCCCTTTTTTTGAAGCACCGATGTTGCGTTCAGAGCTGTAGAATGAGATAATTGGCA
2641 GACTTTAGGTACAGCAAATTCTTACTTATCTAAAGCAATAAGTCAAAGGAGTCCATCATTAAATTAAATCCATAGCTGAT
2721 CACAAGCCTTCATTTTAGCCAAAACTTTCTCTCTAACCAAATCTTTTACCAGACTTGCTAATAAATAACCAGAGAGATGT
2801 GTTAATAAGTGAAGTTGCCAGAAATGGTCAACTGATCGGAAAAAAAAGGATTCAGACTGGAGTATTTTGCCCCTGAATAA
2881 TTGACAGTTGACTGTGCTTTACACAGTAACTAGCCAGTCTGTTGTCTCTGTGTCTTAGTCCAGAGGGAATAGTACCCAAT
2961 TGGCCAAATACTGGCCCTTAGTATCTCCTCCTTTCTTGCATGGGATACAGACGTTTTCAGTCTTGTTTTTATGATCTCTC
3041 TCTATATCCTGATAAGAGTTTGTCATTGACTTACACATTTGGAAGAAATGCACACCAGTGTAATATATTTGATACTGGTG
3121 GAAACTTGAACTTTGTGTTTTTATGAAAATTCATTTATGAGAATATGTAATATAACTGAAGAGTATTTTATGTATATCTA
3201 TATACACAAATATGTATTTGTTATGAGGTATTAAAAACAGGGGTTGGGGGGAGTGCTTCTGATGGCTAACTTTTCTCTAA
3281 TTAAACTATGTTTCTTTGAGTTGTGAACGACCGAGTCTGGGGTCTGGACGGCCAATGATAAGATTTAGAACCACTTGGAT
3361 GGAAAGCAGTTCTTCACTGGTTTTATTCTTGGTATTTTCAAAGAATTATTTTGATATTTTTAATAGAATGTGTAATTTTA
3441 AAATACACAAAAAACTTAAAGTAGTATTGATTATACAAATAATTATTTAACATGTCTTATGGATGTATCTATATGTATAT
3521 AGACAGTAATATATTTATAAAACAAATATACTTTGCTTATGTTATAGCTCTTAGTTTGTGACAGGTGGGAGGATGGCTCT
3601 GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAAAACTCTCAAGCTGTTTTCCCTCTGATTTAC
3681 AATGGTATTTACTTTAAAGTATGTTTGGTTTTCATTATTCTTTTTGCTCTCCAACTTCCTTATTCAAGATAAAATAAGAC
3761 ATACAGTTTTCTGGCCATTCTGTTGGTGTGTGGTGCACCCATTTTATTGTCATCTAACTCCTGGAGAATTCCCACGTGAC
3841 CTGAAATCAAACAGATTCTGGCTGGACATATGCTTATGTTCCAAATATATTAAAGATGTTAATTCAGCTAACAGTTAAGT
3921 TTCCAAGGTATACACCAACAAATAAAATGAGGTATTAAAAAGAGATGGATTACACACATGCATTAGAATAAGAGAAAACA
4001 GTAGTGTTAATAAAAGTAAAGAAACATACACTATCTTAGCCCCCTAGGGCAGGGGTTGACTTTTTCTGTAAAGGATCAGA
4081 TAGTAAATAATACAGGAATCATATGGACTTCAAATGCCATTGTAAAAACTACTCAGCTCTGCCTTTAGAGCATAAGAACA
4161 GCCACAGATAACATGTAAATTAGTGTGGCTGTGTTCCAATAAAACTTTATTTACAGAAACGGGAAGCCGGTCAGATTGGG
4241 CCTGTGGGCCATAATTTGCTGATCTCAAGCAGTAAATCCTGGTATATGTTAATAGAAGAAATCATAATTGCATTTCAGTT
4321 GACATTAAAAGAAAATCTGGTAGTTTTTGATGTCCTTCAAAAGAGGATTGTTAGACATTGATGTTAAAGCATCTTAATTC
4401 ATTTGAGTTTTCTTACCTGTTTACACCCATTATTTATTAGAGATATTTCTTGTGTTTAACCACAAAAAAAAGCACTCTGT
4481 TAAAATGTTTTAATATGTATTGAATTTCTTTCATAAACTTTTCATTTCTGTTGATAAATGGGAATCCCTTACCAACCTTT
4561 TGTTTTTTAAAAGTCTCATAGACCAAAAAAAATCTGTTGCAGCATTTAATTAGCCACAGATACATTTTGGCTGCATTTAC
4641 CAGTTACATTTTTCCATTGGTTTTGGCTTCTAATAAATAACATATCTGCCATTCTTTAAAAATGATTTTAAAGAAGATAA
4721 ATATATTGTAATTTCACATGCTATAGCTTTATTCTGTAAGATTAAAAATTGTGACTAGTATAATTGTAGCTATAATGTGA
4801 GTGGCATGTTACAATGTAACTCTTTATGAGAAATAAAATGTATCTCTGCTTTGTCTGTCCAGATCTTTAGGATTTTTAGA
4881 TGCCTTGGGACTGTCCTTGGTGAATGATATTCTTCATATGATCATATGTAATTTTGAATTCGTTGGAAGTACACGCTGCT
4961 GAGCATGTTTATTCACAGTGCTTTATACCGGGTGTTGCATCAGTAATCATTTTCATAAGAACATTTAAACAGCATGAACA
5041 TCATCATCCACTTAAATAGTTAAACTTTCTTTTAAAATTGGAATGCAACTGTAGGTTTTAACAATGTTTATTGTTTTTTA
5121 AGTGGTTACTTTGTTTTTCCTTAATACTTTCTGTTAACTTAATTATTACTCCTGTTGCAGTGTTACTGTTATGTATTAGA
5201 AGTGGCTTTTCCCCCTAAGATCCTTAGTCTTTTAAAGACAATTTAAGGTATTGGCCATTTGGCAGTAGAAAATGTGCATG
5281 TTTTAACTTGGTTTTATAAAATCTGTAATGTTTCACTTCTTGAACCATGTACCAAATTTGCCAATTTTCTGTCCAAGTGT
5361 TTCAGATGAATAACAAAACGCTGTTCATTGAAGCTTTCGCCACCTTTCTTAAAGCAGCGTATGTTCCAAGGGAAAAAGGC
5441 ATTGAAAAGCAATCGTTTGTTTTTATGAAGAATAGGTGTTCAGATTCCTTCAGTTTTTTTGAAATTAGAAATTTCTTACC
5521 TTATGTGAAATATTCACAAACGTGCACACTTCTGCAGAGACAAAGCATTTCACTGCACGTGTACCAGGTTATTGATTTTA
5601 TCTTTTCCTTTCAGGGTTTTGTCCTCCCAAACCAGAGTCATATGCTGCTAGTAGAATTTTTTATTTGATCCTGCGAACTT
5681 TTCTTATAGGAAAAGTAAGGCAAAGGATGTGTAGTGCAACCATCTGATAAACTAGTGTGATTGTATTTATCCTCTGTTCT
5761 GTGTATTTCTGTAATGGAATCTTTACAATTCCCAAAACGGTATTTTAGACCTACTGGAAATCTGTATCGAAACAGCTATG
5841 TGATTCTGCCACTGAGAAAAAAAAAATTTTTAATTCGTTTTTCTTATGCTGGTTTGTTTTTCTTTAATGAAGAAATTGAT
5921 CTCATATGGCATCATAGATGCTAAATAAATAAAAGCATCATACTTCTCTAGTTTGCCTGCATTCAGTGGCTAACATTATG
6001 AGCATTGTGTAAGATAAACACATGGTCAGTATCAATGTAAATGTTAGAGCCATGATTAATTCCTATGAAAATTGAAATTA
6081 AATGTCAAAGACAACTAGACATAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUUCAUUAACACCAAAAa 5'
            |||||  | ||||||| 
Target 5' taAAGTATGTTTGGTTTTc 3'
 3695 - 3713 161.00 -9.10
2 
miRNA  3' uuUUCAUUAA--CACCAAAAa 5'
            ||||::||   | ||||| 
Target 5' ttAAGTGGTTACTTTGTTTTt 3'
 5118 - 5138 127.00 -5.50
3 
miRNA  3' uuUUCAUUA---ACA-CCAAAAa 5'
            || | ||   ||| |||||| 
Target 5' ttAAATTATACATGTAGGTTTTg 3'
 2271 - 2293 125.00 -5.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31559046 34 COSMIC
COSN30106335 48 COSMIC
COSN31533928 56 COSMIC
COSN18713781 87 COSMIC
COSN28775100 100 COSMIC
COSN22357379 147 COSMIC
COSN31588377 177 COSMIC
COSN31536789 178 COSMIC
COSN29218473 199 COSMIC
COSN29079538 210 COSMIC
COSN6406101 210 COSMIC
COSN6984853 244 COSMIC
COSN20092424 308 COSMIC
COSN6606929 696 COSMIC
COSN5894481 704 COSMIC
COSN19554762 714 COSMIC
COSN32063049 913 COSMIC
COSN17741328 1180 COSMIC
COSN32058722 1286 COSMIC
COSN26285543 1546 COSMIC
COSN17296761 1633 COSMIC
COSN8938661 1790 COSMIC
COSN24703335 1953 COSMIC
COSN29781405 2337 COSMIC
COSN1513434 2418 COSMIC
COSN23251901 2848 COSMIC
COSN25374354 3043 COSMIC
COSN8533261 3100 COSMIC
COSN28198139 3331 COSMIC
COSN6984854 3982 COSMIC
COSN27129217 4255 COSMIC
COSN24376570 4436 COSMIC
COSN16047049 4665 COSMIC
COSN25005499 4981 COSMIC
COSN22191373 5251 COSMIC
COSN8213432 5307 COSMIC
COSN21309712 5380 COSMIC
COSN25279856 5732 COSMIC
COSN16550571 5866 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1345126081 1 dbSNP
rs1403277322 4 dbSNP
rs1332115461 8 dbSNP
rs1285305302 9 dbSNP
rs982209924 14 dbSNP
rs780816667 16 dbSNP
rs747708899 20 dbSNP
rs1271571970 23 dbSNP
rs1309776836 24 dbSNP
rs1206318814 26 dbSNP
rs755709266 28 dbSNP
rs779884827 30 dbSNP
rs1201086549 31 dbSNP
rs746870693 31 dbSNP
rs928148428 31 dbSNP
rs1465336037 38 dbSNP
rs1377983000 47 dbSNP
rs777815201 48 dbSNP
rs749253739 49 dbSNP
rs761625969 52 dbSNP
rs1165026541 87 dbSNP
rs1473174083 88 dbSNP
rs1052494991 90 dbSNP
rs1237344458 91 dbSNP
rs1186132294 97 dbSNP
rs1459360619 107 dbSNP
rs1239223393 118 dbSNP
rs1439307471 127 dbSNP
rs1197590274 129 dbSNP
rs755204564 131 dbSNP
rs1315644212 134 dbSNP
rs1274691675 138 dbSNP
rs1228325300 142 dbSNP
rs1351780988 156 dbSNP
rs1355114959 158 dbSNP
rs1016046233 163 dbSNP
rs893783300 178 dbSNP
rs1444349334 183 dbSNP
rs1377322002 184 dbSNP
rs1330376329 186 dbSNP
rs961399499 188 dbSNP
rs771792072 189 dbSNP
rs1040022180 192 dbSNP
rs1406023760 199 dbSNP
rs35138658 199 dbSNP
rs200771253 200 dbSNP
rs576986954 206 dbSNP
rs959250452 215 dbSNP
rs1381513483 231 dbSNP
rs1189317796 234 dbSNP
rs1178364774 236 dbSNP
rs990672087 239 dbSNP
rs917720629 261 dbSNP
rs746773394 264 dbSNP
rs998112103 265 dbSNP
rs1417424763 271 dbSNP
rs1287175660 279 dbSNP
rs1241723418 280 dbSNP
rs1029474849 290 dbSNP
rs1308462233 291 dbSNP
rs886961262 308 dbSNP
rs1003946258 319 dbSNP
rs565458733 322 dbSNP
rs936330755 326 dbSNP
rs1349342607 327 dbSNP
rs990389705 331 dbSNP
rs1421619527 333 dbSNP
rs1172768113 334 dbSNP
rs1361672657 335 dbSNP
rs643433 342 dbSNP
rs1158640241 350 dbSNP
rs1305055923 355 dbSNP
rs914837914 358 dbSNP
rs780978704 359 dbSNP
rs1191379251 361 dbSNP
rs932879660 365 dbSNP
rs532631410 369 dbSNP
rs991211441 370 dbSNP
rs1218092465 373 dbSNP
rs868244914 381 dbSNP
rs1023060335 387 dbSNP
rs944159160 388 dbSNP
rs541259356 389 dbSNP
rs1313719718 392 dbSNP
rs1279116376 401 dbSNP
rs1436472351 405 dbSNP
rs1037100651 418 dbSNP
rs559498260 423 dbSNP
rs1273315540 429 dbSNP
rs969583123 429 dbSNP
rs1401854188 432 dbSNP
rs982346992 438 dbSNP
rs529783993 439 dbSNP
rs995521201 442 dbSNP
rs1349284105 447 dbSNP
rs1361434633 449 dbSNP
rs1177176921 450 dbSNP
rs1414270965 461 dbSNP
rs747533956 465 dbSNP
rs1389193375 467 dbSNP
rs1195481217 469 dbSNP
rs1477855213 477 dbSNP
rs1308617314 484 dbSNP
rs1261901235 492 dbSNP
rs1026965208 497 dbSNP
rs1484172685 500 dbSNP
rs769193184 510 dbSNP
rs1209095260 527 dbSNP
rs935528227 533 dbSNP
rs895068812 534 dbSNP
rs1261479285 537 dbSNP
rs547967374 544 dbSNP
rs1024846408 546 dbSNP
rs1350539775 553 dbSNP
rs1212157432 555 dbSNP
rs1277596589 569 dbSNP
rs7126755 571 dbSNP
rs1381898640 575 dbSNP
rs1303937518 582 dbSNP
rs1479659261 596 dbSNP
rs1447754818 597 dbSNP
rs1357845721 606 dbSNP
rs1172344587 609 dbSNP
rs1422514631 611 dbSNP
rs1465855212 611 dbSNP
rs1197623724 620 dbSNP
rs1167861166 621 dbSNP
rs1251405920 635 dbSNP
rs1425055936 648 dbSNP
rs1256695265 649 dbSNP
rs768738854 650 dbSNP
rs978267197 650 dbSNP
rs530428495 662 dbSNP
rs957998132 665 dbSNP
rs1039675896 668 dbSNP
rs921562485 669 dbSNP
rs989122901 669 dbSNP
rs932912311 670 dbSNP
rs899848603 689 dbSNP
rs985674556 693 dbSNP
rs1455441032 695 dbSNP
rs1174122060 700 dbSNP
rs912746536 705 dbSNP
rs1333742564 708 dbSNP
rs1353866720 711 dbSNP
rs944207749 714 dbSNP
rs1037578377 716 dbSNP
rs1328881107 721 dbSNP
rs933875321 724 dbSNP
rs897258193 729 dbSNP
rs1051034360 732 dbSNP
rs772869878 736 dbSNP
rs1163946486 739 dbSNP
rs931347973 739 dbSNP
rs886928348 740 dbSNP
rs1382118710 742 dbSNP
rs1299376076 743 dbSNP
rs1048437055 744 dbSNP
rs545919839 751 dbSNP
rs1237795836 764 dbSNP
rs1012207709 766 dbSNP
rs1323501468 767 dbSNP
rs530327295 787 dbSNP
rs1017093515 806 dbSNP
rs1373568207 816 dbSNP
rs151135311 835 dbSNP
rs1357863205 837 dbSNP
rs34643526 837 dbSNP
rs570775952 841 dbSNP
rs34134034 843 dbSNP
rs1297412834 853 dbSNP
rs1241248465 864 dbSNP
rs1376719691 869 dbSNP
rs1304402401 871 dbSNP
rs139013503 874 dbSNP
rs1391037539 887 dbSNP
rs1292384902 891 dbSNP
rs1422225995 892 dbSNP
rs1362303365 893 dbSNP
rs546846350 894 dbSNP
rs1031227380 896 dbSNP
rs1378305847 899 dbSNP
rs957784880 903 dbSNP
rs1022605851 906 dbSNP
rs971060922 913 dbSNP
rs1268348130 926 dbSNP
rs982316286 931 dbSNP
rs1489882363 939 dbSNP
rs1035267602 949 dbSNP
rs760190384 951 dbSNP
rs988286873 953 dbSNP
rs915401476 954 dbSNP
rs968132729 955 dbSNP
rs975922316 957 dbSNP
rs1028649115 958 dbSNP
rs114622708 973 dbSNP
rs536796001 974 dbSNP
rs1194027985 977 dbSNP
rs934010961 980 dbSNP
rs762148511 995 dbSNP
rs912827209 1000 dbSNP
rs1298707786 1005 dbSNP
rs768075426 1014 dbSNP
rs1419066041 1016 dbSNP
rs1382740745 1030 dbSNP
rs1426644948 1032 dbSNP
rs1172499960 1037 dbSNP
rs1373099683 1040 dbSNP
rs1460474934 1048 dbSNP
rs370337320 1054 dbSNP
rs1199058271 1055 dbSNP
rs965991393 1058 dbSNP
rs1265495353 1063 dbSNP
rs1323395454 1079 dbSNP
rs576452198 1081 dbSNP
rs1260274760 1083 dbSNP
rs1441252406 1084 dbSNP
rs1202472887 1086 dbSNP
rs1288630756 1086 dbSNP
rs1360362096 1100 dbSNP
rs762070488 1104 dbSNP
rs972929412 1105 dbSNP
rs898339821 1108 dbSNP
rs1319346165 1135 dbSNP
rs565439799 1137 dbSNP
rs1278235123 1144 dbSNP
rs1398873139 1145 dbSNP
rs1324557982 1152 dbSNP
rs1012648395 1160 dbSNP
rs1336098785 1172 dbSNP
rs1332461720 1174 dbSNP
rs544753854 1174 dbSNP
rs1175953339 1185 dbSNP
rs1468475606 1197 dbSNP
rs1426073211 1198 dbSNP
rs1171397733 1201 dbSNP
rs1475127164 1203 dbSNP
rs1044564089 1205 dbSNP
rs906870700 1208 dbSNP
rs1443330352 1210 dbSNP
rs1231535823 1244 dbSNP
rs1275202583 1253 dbSNP
rs1335712228 1269 dbSNP
rs1002532695 1270 dbSNP
rs773594761 1288 dbSNP
rs1202205111 1302 dbSNP
rs761183482 1303 dbSNP
rs1241276900 1318 dbSNP
rs766394765 1319 dbSNP
rs112851985 1322 dbSNP
rs1336946172 1327 dbSNP
rs1285875089 1333 dbSNP
rs1010247782 1334 dbSNP
rs916606588 1343 dbSNP
rs1334407690 1345 dbSNP
rs1448729404 1346 dbSNP
rs1402659659 1347 dbSNP
rs948021422 1348 dbSNP
rs1409449922 1349 dbSNP
rs755294557 1352 dbSNP
rs906468302 1353 dbSNP
rs968645133 1356 dbSNP
rs558894295 1358 dbSNP
rs111942214 1364 dbSNP
rs1441943587 1366 dbSNP
rs893632384 1374 dbSNP
rs1010634994 1376 dbSNP
rs541321209 1380 dbSNP
rs1419450045 1382 dbSNP
rs1435531920 1384 dbSNP
rs192090285 1385 dbSNP
rs955358464 1391 dbSNP
rs796730963 1395 dbSNP
rs1355477682 1404 dbSNP
rs369804948 1409 dbSNP
rs1157956575 1410 dbSNP
rs1377454220 1411 dbSNP
rs1008583721 1419 dbSNP
rs1441818189 1422 dbSNP
rs986762306 1424 dbSNP
rs1353000498 1429 dbSNP
rs1455687634 1438 dbSNP
rs1289896911 1455 dbSNP
rs1018988428 1459 dbSNP
rs1355381766 1463 dbSNP
rs542363562 1465 dbSNP
rs1421899246 1475 dbSNP
rs908553770 1482 dbSNP
rs1381358304 1491 dbSNP
rs1176241546 1493 dbSNP
rs1468237156 1496 dbSNP
rs939927936 1497 dbSNP
rs1038714134 1498 dbSNP
rs1227978691 1507 dbSNP
rs1490061190 1508 dbSNP
rs1289502117 1515 dbSNP
rs1282435181 1519 dbSNP
rs1314837909 1522 dbSNP
rs751458802 1551 dbSNP
rs1221891329 1554 dbSNP
rs1371374078 1555 dbSNP
rs919754074 1561 dbSNP
rs918799890 1567 dbSNP
rs1276842656 1573 dbSNP
rs563261830 1579 dbSNP
rs1345035688 1584 dbSNP
rs1485290499 1587 dbSNP
rs530596078 1588 dbSNP
rs1301800804 1591 dbSNP
rs1185763929 1592 dbSNP
rs1402448871 1604 dbSNP
rs551921732 1605 dbSNP
rs1044122209 1610 dbSNP
rs906921579 1613 dbSNP
rs1399340453 1640 dbSNP
rs1002585069 1646 dbSNP
rs1426818477 1649 dbSNP
rs1172871891 1650 dbSNP
rs1475261581 1671 dbSNP
rs984232185 1676 dbSNP
rs1052690260 1677 dbSNP
rs1195242924 1684 dbSNP
rs564051825 1686 dbSNP
rs1402155594 1711 dbSNP
rs370489796 1716 dbSNP
rs867764806 1718 dbSNP
rs1375278748 1720 dbSNP
rs1433370811 1727 dbSNP
rs753860452 1732 dbSNP
rs1376081394 1736 dbSNP
rs1322882414 1739 dbSNP
rs1281396624 1742 dbSNP
rs1441566869 1760 dbSNP
rs1009804323 1762 dbSNP
rs1277921161 1763 dbSNP
rs1022999692 1771 dbSNP
rs757114379 1777 dbSNP
rs997464503 1795 dbSNP
rs759375633 1796 dbSNP
rs1253570971 1797 dbSNP
rs780975293 1798 dbSNP
rs76316149 1799 dbSNP
rs986899790 1814 dbSNP
rs1015583106 1845 dbSNP
rs745808533 1863 dbSNP
rs546909575 1874 dbSNP
rs568323056 1878 dbSNP
rs183217102 1898 dbSNP
rs1479992145 1899 dbSNP
rs144941023 1918 dbSNP
rs1196115384 1930 dbSNP
rs948666299 1944 dbSNP
rs1230735436 1946 dbSNP
rs377030497 1949 dbSNP
rs1261497156 1952 dbSNP
rs888869333 1961 dbSNP
rs979869348 1972 dbSNP
rs928482546 1973 dbSNP
rs962014598 1995 dbSNP
rs938411944 2001 dbSNP
rs570083540 2002 dbSNP
rs1381997528 2004 dbSNP
rs994450535 2006 dbSNP
rs748773655 2014 dbSNP
rs1025886899 2026 dbSNP
rs952910241 2037 dbSNP
rs1394820583 2040 dbSNP
rs185080189 2041 dbSNP
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rs1007773414 5864 dbSNP
rs554443074 5866 dbSNP
rs1190219365 5867 dbSNP
rs3741339 5867 dbSNP
rs3832784 5867 dbSNP
rs901893701 5868 dbSNP
rs1208822196 5873 dbSNP
rs1156677758 5877 dbSNP
rs1464375450 5878 dbSNP
rs1382094433 5886 dbSNP
rs535202409 5892 dbSNP
rs1235103871 5897 dbSNP
rs544367877 5910 dbSNP
rs1300370430 5917 dbSNP
rs1233760012 5921 dbSNP
rs1172452285 5924 dbSNP
rs746401483 5927 dbSNP
rs1397378224 5952 dbSNP
rs371109666 5957 dbSNP
rs1384837768 5959 dbSNP
rs1335484033 5961 dbSNP
rs562928560 5969 dbSNP
rs899388428 5974 dbSNP
rs775759601 5977 dbSNP
rs1173408562 5983 dbSNP
rs533366878 5986 dbSNP
rs1445007002 5987 dbSNP
rs1312004081 5988 dbSNP
rs796193343 5995 dbSNP
rs1464081082 6000 dbSNP
rs763074324 6004 dbSNP
rs1034484913 6005 dbSNP
rs959051075 6006 dbSNP
rs1254271751 6012 dbSNP
rs1255139567 6030 dbSNP
rs1208538017 6036 dbSNP
rs1347255191 6043 dbSNP
rs959285325 6054 dbSNP
rs990579562 6057 dbSNP
rs1250070619 6073 dbSNP
rs917762638 6079 dbSNP
rs970860217 6080 dbSNP
rs1014333979 6089 dbSNP
rs1024282671 6102 dbSNP
rs967337940 6104 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000278590.3 | 3UTR | UUGGCUUCUAAUAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
168 hsa-miR-548ap-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059371 ANP32E acidic nuclear phosphoprotein 32 family member E 2 2
MIRT072854 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 6
MIRT076951 PCGF2 polycomb group ring finger 2 2 6
MIRT083943 TFAP2C transcription factor AP-2 gamma 2 2
MIRT085407 ETS2 ETS proto-oncogene 2, transcription factor 2 2
MIRT109797 KLHL15 kelch like family member 15 2 2
MIRT114053 AKAP11 A-kinase anchoring protein 11 2 10
MIRT130205 TXNIP thioredoxin interacting protein 2 6
MIRT150038 MIDN midnolin 2 2
MIRT181263 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT205597 NCL nucleolin 2 2
MIRT222256 ACTB actin beta 2 4
MIRT245657 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 4
MIRT250952 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 2 4
MIRT252500 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT271995 ARF1 ADP ribosylation factor 1 2 4
MIRT280806 RNF11 ring finger protein 11 2 2
MIRT293808 FEM1A fem-1 homolog A 2 2
MIRT318235 RREB1 ras responsive element binding protein 1 2 2
MIRT341461 ATP6V0B ATPase H+ transporting V0 subunit b 2 2
MIRT347424 CEBPG CCAAT/enhancer binding protein gamma 2 4
MIRT351865 PLEKHA3 pleckstrin homology domain containing A3 2 2
MIRT357988 GRPEL2 GrpE like 2, mitochondrial 2 2
MIRT377096 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT407313 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT441565 LMOD3 leiomodin 3 2 2
MIRT442365 ZC3H12C zinc finger CCCH-type containing 12C 2 2
MIRT443229 ARL5B ADP ribosylation factor like GTPase 5B 2 2
MIRT443405 HMX3 H6 family homeobox 3 2 2
MIRT446056 NR5A2 nuclear receptor subfamily 5 group A member 2 2 2
MIRT448278 ZNF652 zinc finger protein 652 2 2
MIRT450823 KCNB1 potassium voltage-gated channel subfamily B member 1 2 2
MIRT453017 CCDC115 coiled-coil domain containing 115 2 17
MIRT454464 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta 2 2
MIRT456361 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT460008 DNALI1 dynein axonemal light intermediate chain 1 2 2
MIRT463155 ZNF385A zinc finger protein 385A 2 6
MIRT463767 YPEL2 yippee like 2 2 2
MIRT468311 SFT2D2 SFT2 domain containing 2 2 2
MIRT470669 POLR2D RNA polymerase II subunit D 2 4
MIRT478518 CTTN cortactin 2 2
MIRT480508 C11orf57 chromosome 11 open reading frame 57 2 2
MIRT484719 INHBA inhibin beta A subunit 2 12
MIRT485495 HMGN2 high mobility group nucleosomal binding domain 2 2 2
MIRT487303 SLC38A9 solute carrier family 38 member 9 2 2
MIRT487772 ANKEF1 ankyrin repeat and EF-hand domain containing 1 2 16
MIRT491877 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT494305 CEP120 centrosomal protein 120 2 2
MIRT495397 TRIM24 tripartite motif containing 24 2 2
MIRT495647 CDK1 cyclin dependent kinase 1 2 2
MIRT496666 TMEM237 transmembrane protein 237 2 2
MIRT496838 ZNF460 zinc finger protein 460 2 2
MIRT498639 CHD4 chromodomain helicase DNA binding protein 4 2 10
MIRT503929 FBXL13 F-box and leucine rich repeat protein 13 2 4
MIRT506064 PPP2R2A protein phosphatase 2 regulatory subunit Balpha 2 2
MIRT506583 MIER3 MIER family member 3 2 4
MIRT506607 MAT2A methionine adenosyltransferase 2A 2 4
MIRT506845 KIF23 kinesin family member 23 2 6
MIRT508537 RPP14 ribonuclease P/MRP subunit p14 2 4
MIRT509670 ZNF354B zinc finger protein 354B 2 10
MIRT511171 MBNL3 muscleblind like splicing regulator 3 2 6
MIRT512148 COX6B1 cytochrome c oxidase subunit 6B1 2 2
MIRT512832 ID4 inhibitor of DNA binding 4, HLH protein 2 6
MIRT514559 XRCC3 X-ray repair cross complementing 3 2 4
MIRT515857 AJAP1 adherens junctions associated protein 1 2 4
MIRT521849 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT525365 SYNM synemin 2 2
MIRT527121 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT527272 FBLN2 fibulin 2 2 2
MIRT527440 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527659 CD300E CD300e molecule 2 2
MIRT528335 TBC1D22B TBC1 domain family member 22B 2 2
MIRT529035 EXOC8 exocyst complex component 8 2 2
MIRT529322 PDE5A phosphodiesterase 5A 2 2
MIRT529678 TRPV2 transient receptor potential cation channel subfamily V member 2 2 2
MIRT529847 SMTN smoothelin 2 2
MIRT530386 ZNF431 zinc finger protein 431 2 2
MIRT530914 GPR85 G protein-coupled receptor 85 2 2
MIRT531795 KDR kinase insert domain receptor 2 2
MIRT532247 KLF2 Kruppel like factor 2 2 4
MIRT532659 CBX7 chromobox 7 2 2
MIRT533632 TMX3 thioredoxin related transmembrane protein 3 2 2
MIRT534812 RAB33B RAB33B, member RAS oncogene family 2 2
MIRT534976 PSD3 pleckstrin and Sec7 domain containing 3 2 2
MIRT536589 ITPKB inositol-trisphosphate 3-kinase B 2 2
MIRT536780 HNRNPD heterogeneous nuclear ribonucleoprotein D 2 2
MIRT538765 CABLES1 Cdk5 and Abl enzyme substrate 1 2 2
MIRT539296 ANGEL2 angel homolog 2 2 2
MIRT539622 SHISA9 shisa family member 9 2 2
MIRT539652 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT540348 OPHN1 oligophrenin 1 2 2
MIRT540414 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 2 2
MIRT541397 CDC27 cell division cycle 27 2 2
MIRT542917 HSBP1 heat shock factor binding protein 1 2 2
MIRT544711 EIF5A eukaryotic translation initiation factor 5A 2 4
MIRT544999 MFF mitochondrial fission factor 2 4
MIRT553290 TSPAN3 tetraspanin 3 2 2
MIRT553456 TNRC6C trinucleotide repeat containing 6C 2 2
MIRT553783 TAF13 TATA-box binding protein associated factor 13 2 2
MIRT554657 ROBO1 roundabout guidance receptor 1 2 2
MIRT555105 PURB purine rich element binding protein B 2 2
MIRT557236 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT560862 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561544 SON SON DNA binding protein 2 2
MIRT561555 SLMO2 PRELI domain containing 3B 2 2
MIRT563765 ZNF678 zinc finger protein 678 2 2
MIRT565654 SIX4 SIX homeobox 4 2 2
MIRT568081 CELF2 CUGBP Elav-like family member 2 2 2
MIRT568760 MYBL1 MYB proto-oncogene like 1 2 2
MIRT569079 CADM2 cell adhesion molecule 2 2 2
MIRT569510 THYN1 thymocyte nuclear protein 1 2 2
MIRT571269 CDKN2AIP CDKN2A interacting protein 2 2
MIRT571810 PHF19 PHD finger protein 19 2 2
MIRT572555 DKK3 dickkopf WNT signaling pathway inhibitor 3 2 2
MIRT573783 SLC24A4 solute carrier family 24 member 4 2 4
MIRT576442 Ccdc115 coiled-coil domain containing 115 2 10
MIRT576713 Slc30a3 solute carrier family 30 (zinc transporter), member 3 2 3
MIRT608378 PIWIL2 piwi like RNA-mediated gene silencing 2 2 2
MIRT608485 NKTR natural killer cell triggering receptor 2 6
MIRT610187 FAM49A family with sequence similarity 49 member A 2 2
MIRT611632 EDIL3 EGF like repeats and discoidin domains 3 2 2
MIRT613535 TRA2B transformer 2 beta homolog 2 2
MIRT616222 PTPN11 protein tyrosine phosphatase, non-receptor type 11 2 2
MIRT622371 SALL1 spalt like transcription factor 1 2 2
MIRT624372 CDK12 cyclin dependent kinase 12 2 2
MIRT624996 ZNF665 zinc finger protein 665 2 4
MIRT626876 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627738 RAP2B RAP2B, member of RAS oncogene family 2 4
MIRT628491 ADAT2 adenosine deaminase, tRNA specific 2 2 2
MIRT633648 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 2 4
MIRT634029 SLC30A3 solute carrier family 30 member 3 2 3
MIRT635924 GLTSCR2 NOP53 ribosome biogenesis factor 2 2
MIRT638288 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT641960 RNF115 ring finger protein 115 2 2
MIRT643574 CTNNA3 catenin alpha 3 2 2
MIRT645181 NOL9 nucleolar protein 9 2 4
MIRT647498 ZNF639 zinc finger protein 639 2 2
MIRT647683 PCK1 phosphoenolpyruvate carboxykinase 1 2 2
MIRT648423 MYOZ3 myozenin 3 2 2
MIRT650114 ZCCHC9 zinc finger CCHC-type containing 9 2 2
MIRT651077 ZNF518B zinc finger protein 518B 2 4
MIRT651416 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 2 2
MIRT651457 XKR4 XK related 4 2 2
MIRT653620 SLC30A4 solute carrier family 30 member 4 2 2
MIRT653638 SLC30A1 solute carrier family 30 member 1 2 2
MIRT654897 POU2F1 POU class 2 homeobox 1 2 2
MIRT656484 MAP3K9 mitogen-activated protein kinase kinase kinase 9 2 2
MIRT658017 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit 2 2
MIRT658042 FZD10 frizzled class receptor 10 2 2
MIRT660094 BTBD3 BTB domain containing 3 2 2
MIRT663924 MAGEF1 MAGE family member F1 2 2
MIRT665883 TGIF2 TGFB induced factor homeobox 2 2 2
MIRT669052 CEP128 centrosomal protein 128 2 2
MIRT669712 AAGAB alpha and gamma adaptin binding protein 2 2
MIRT686813 SNX2 sorting nexin 2 2 4
MIRT689884 SOD2 superoxide dismutase 2 2 2
MIRT693275 GLRX2 glutaredoxin 2 2 4
MIRT697057 BCAR1 BCAR1, Cas family scaffolding protein 2 2
MIRT703298 GID4 GID complex subunit 4 homolog 2 2
MIRT704088 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 2 2
MIRT707720 CDC6 cell division cycle 6 2 2
MIRT708137 GK5 glycerol kinase 5 (putative) 2 2
MIRT709213 KLHL30 kelch like family member 30 2 2
MIRT710063 RWDD2A RWD domain containing 2A 2 2
MIRT712771 POU6F2 POU class 6 homeobox 2 2 2
MIRT715074 TMTC1 transmembrane and tetratricopeptide repeat containing 1 2 2
MIRT715388 TADA3 transcriptional adaptor 3 2 2
MIRT717713 NCKAP1 NCK associated protein 1 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-548ap Tripterygium wilfordii Hook F resistant tissue
hsa-miR-548ap-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-548ap-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-548ap-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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