miRTarBase - #MIRT442514


—
pre-miRNA Information
pre-miRNA hsa-mir-4707   
Genomic Coordinates chr14: 22956950 - 22957029
Description Homo sapiens miR-4707 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4707-3p
Sequence 52| AGCCCGCCCCAGCCGAGGUUCU |73
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1180125593 2 dbSNP
rs1390998288 5 dbSNP
rs2273626 6 dbSNP
rs765507627 7 dbSNP
rs1299611135 9 dbSNP
rs1158707105 11 dbSNP
rs535691977 15 dbSNP
rs952013388 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SYT7   
Synonyms IPCA-7, IPCA7, PCANAP7, SYT-VII, SYTVII
Description synaptotagmin 7
Transcript NM_004200   
Expression
Putative miRNA Targets on SYT7
3'UTR of SYT7
(miRNA target sites are highlighted)		 
>SYT7|NM_004200|3'UTR
   1 GTGGGGCCAAGGGAGGCCCAGGGGGCCGAGGGCCCAGGTCCCCATCATGCCCTCACCACTTTATGCACAACGCCCGGCCT
  81 GAGCCCCCTGCCATAGGGAGGGGAGGACCCTGAGGGCTCAGCCAGGGAGGGGTCCCAGGACTCAACTGGGCCCCGTTTCT
 161 AGGAAGTACCAGCCCCATCCCCCACAGTCCAGCTCCGGGGAAGGGGCTCTGGGAGGCATTTTCCTGCTTTGCCCCTTTTC
 241 TTCCTGACTTACTAATACTAAAGAAGTTGGGGGAGCTCGAGAGCCAGACGGCCAGACAGGCAGACCCCTCCAGAGGCCCG
 321 CCAGGTGGGCATGGTCCCCCATTTTCTTTAAGGCAGCACCTGGAGTGGAGAGAGGCCACTCCCTCTCCAGCCCCCGATGT
 401 GGACCCGGGGAGGGGAGGCTGAGGCGTTTGGCCCCGGCCTGGCCAGGAGAGGCCCATCCCCAGGGCAGTTTCAGGTGCCG
 481 GCTGGGCCCTGAATGTCGAGGATAGTATATAGCCCGCTCCTGGGTCCTGGAGCTGTGGCCCTTTGTACTCGTGTTGTGTC
 561 CATTGTGTGTGTGCGTGGGGACAGAGGCCTGGAAATGCGGAGGACTATACAGAGAAGGCAGGTTTTGTGAAGGCCAGGCA
 641 GGGTTGGAGGCCGGGGGTGTGAGAGGAGAGGCCCATAGGGCTGAGTGGGGTCGGGTGAGGCAGAGGTCAGAAACAGAAGA
 721 GCTGCAGTTGCTGGAGCTGGGCTGAGAACTGGGCTGCCTCCTGCCATCCCCCCGTCTCCTCCCCTTCTCCCCTTGGTGCC
 801 CCCCTCTGCTCAGAATCTGAAGTAGTTCCCTCCTCAGCAATTTCATCTCTTGAACACTGACTCACACCTTTTAGGCACCT
 881 ACTGTGTGCATAGCATTCCACCAGGACTCATCTCCCTTCCTTCTCAGGGGGTCCCGAGCCCCGACTAGCTTTGCCCTAAC
 961 TCCTTCATCAAAAGACCCCCCGCCAGCTTCCCACACCTCATACGCAGCCACATCTGCCCTATTCTCCATGCTTTCCAGCT
1041 TGCCTGCCCTTCCTCATCTCTCCCTGCCTGTGCAGACCTCCACCCTTCTTTCCTCCACCCCTCCATCCCCCAATGCTTGT
1121 AGACCTTCCATTCATTCCGTCTCATCGTGCGTGGTCTCTGATCGTCCATCACCTGACCTTCTCCAGGACTGTCTTCTCAC
1201 CCTTCCCCACTCCCTGGTCCCCGGGAGCAGCTCCTTCTGCCCGACTCACTCACAGTGCAGGGAAAGGAGGCAGGGAAAAG
1281 ACCAGGATTCTGTGAGTTCTGAGGTTGCCACACACAAAGAAGCTGTGGTTTCTCTGCCTCGGCCACTGATGAGACTAAAA
1361 CTGGCTTCCCCTTGGAGACGGCAGATTTCAGGCTGATCCCTGCTTAAGCCCTCTCATCCCCACGCTGGTCCTGGTATTGA
1441 TACAAGACCCAGCTGGTGACAAAGCCTCCAATCCTGGGGGTCCACGAGCCTGGGCCTGACATTCCCAGAACTACCGCCAG
1521 GTGGCGCCAGGCCCCCACAGTCTGTGGCCGTGGTCTTAGCCCCCAGTTCCACTCTGGATGGGCCTGTGACACCCCAAAGA
1601 GAAGAAGGGGACTCTGGATAGGGTCCCCACATCCAGGGCGTGGGGAGACCATTGGCATTTGGGAACCATTTTCCTTCGAA
1681 CGGCTTCCCCTTGAGCTGAGCATTCTGCTTGCTGCAGTAGACGGGTCGCCTTTTGCCCATACCGAAATTTTCTGAAATTA
1761 AATCGCACACCCCCACCATTTCCTCTCCCTGGGATCTGGAGGAACATCATACATAGTAGGTGAATCGTTTTGTAGAGTGA
1841 AGAATGCTAATGTAAAGCAAATAGTCACCCACGTTCCTTGTAAATCCAAATGTTTCTATATTGTAGCTTTGCTTAAAATG
1921 GGGTCGGCCCCAACTGCATCCTCCTCTTTGGCGGGCTGGGGAGCGGCCCCCAGCCGGGACGGGAGGGCAGCGACCCCGAG
2001 GCCTCGTGGACGTGGGAGAGAGTGTGGTGGGAAGTCTTGAGCGGAGGAGGGGATCTGCCCTTCTCCACTCCTCTCTTGGA
2081 TCCGCCTCGGTTTCCTGTCCCCCCACCACCCGCCTGCCCCGCGGAAGACCGCCCAGTGAGCCAGCCCCCACCTTCCAGGC
2161 GCCTTCGCCCTGGGGATCCAACCAACTTGTATCGAGTGGGCGGGGCAACGGCTCCCCATTTTTCCCGAGCCCCGCCCACA
2241 GAGCTCTTAGCCAATCCTATGCAGAGAGCATCTCCTGGCAGGGGTCTCTTCCCAACCAGACCCCACCCAGGCACATTAGC
2321 GACCAGGCTTGGGCTTCCCCAGCGCCCCACCACCACCACGTGCAGGTGGAGCTCTGGGATGCTATGTTGGGGCGGCAAGC
2401 GGTGGGCCGAGGGCCGGGTAGGCTAGCACGGGAGGTAAGGGTGGTATGGGATGGGGCGGGGGCGGTCTAGGGCAATAGGA
2481 GAGCAGAGAATGGGGGAACTTGAGGGTGGGGGGAGGGCACCGGAGCCTTGCCACCATCCCAGGACTTTGGGCAAGTCACC
2561 CGCACTCCCTGGGCCTCGGTTTCCCCATCTGTAAAATGATGGTAATAATACTTCACCTACCTCATAGGGGAGGTTGTGAG
2641 GCCACCATCACCTGACCTGGGGGTCAAGGCAGGAGGACTCCGAAGGTGCTACCCGTGAGCAAAGTGTAATTACCGAATCC
2721 TGACTGCAAGGCCCACCTGCCCCTCCCCCACAGAGCCTCCAGAGCTAGCTGAGGCCAACGCAGGCCCATCCGTCTCTTCA
2801 CTCTGTCGCAGGCCCTTTCATGGGCTTCGTCTGCCATCTTTGTGGGTGCCCTAGACTTAGTCCTTATCTTGTCCTGGTTT
2881 CCTTTCTTGTGACCATCTCCCCATGAAAGTGCTGTACAAATTCCACCCGCCCCAGGACCCCCGCACCTGCCCTCTGGCAC
2961 CAGATGCCAGGGAAGGGACAGAGGAAAACAGCCACAAACAAGCCAGGGGGGCTCCCCGGAGCCCCAGGGGTGGGGATTGG
3041 TGGCCACTGTTTGTATGTTCTTGAGTGCAAGTGTTTTATAAAAAATAAAACAAAAACCCACCATCACAAAAAAAAAAATT
3121 TTGCAGCGAAGAGAAATGAAGAAAAACTGAAGAAAAAAAAAAAACAGGAAAAAAAGAACCATACAAAATTTTTCCACCAC
3201 ACATACCCTCTAAGCCAGCAAGATTTCCTCTTTGCAAAATCATATTTTTGTGGGAATGGGCCCTGCTTTTTGTGGCAAGG
3281 CCTGTTCTGATTAATAAAGGATCGTGAAAAAGTAGGGCCTTGGCTGTTTCCTCCGTGGGTCCCAGCCCTCCCTCACCTCC
3361 CTGGGGGCAGAGGCAGTGGGGTGAAGGGGATGGGGGCCCCGGGGCTGAGCCTCCCCTCAGTGTGTCACCTTTGGGATTTG
3441 ACTTCACTGGTGACCAGGCCCTTCCCGAGTGTCCAGCCATCCTCAGATCTCTATAGAATATGATCCCACTGGCTTCCCAG
3521 AAAGCAGAGAGGCAGCTACATCTCCCAGATCAGGCCTGACACAAGGCTTTTTGGGAGTAGAGTCCTCTCTAGGCCTCAGG
3601 GGTGCCCTCCAGGGTCACCCAGCCTGACGTCCCCTCCCTCAGTTCCCAGAGGACACTTGCCACCCTCCAAGGCAGCTCAG
3681 ACAAACCAAAGGGGGACGCTCCAGCTTTCCCACCACCATCCATGGGGCCACTGTAGTTTCAGGCCAGCGCCTCCTTCCTG
3761 GTCCCTGAGGTGGGAAAAGGAAAGACAATGAGCTCTGTGTCTGTTGGCTGGACCTGCGGCTTCTCTCAGCCCTCTTCTAG
3841 TTTCATTCTTTAGGATTAGAAAAGTCTCTTCCACTCAATAGAACAGGTTCCAGCCTGAGGTGTGGGAAGCTGGGTTGTAA
3921 TCCCTTCTGCAGCCTCTGTGGCCCTGGGCAAGCTCTTTCCTTCCACCTGTTTCTTCTGGCCACAACAAAGCAATAACCAT
4001 CCCCATCCCCTGCCCTTTCTTCCCCACCCAGCCCAGGGGAAGCTGAGCCCCCGCAGCTCTCAGGGTACTTCAGAAGGAAG
4081 GTGCTACATCTGGTTCAGACACAGGCACAAAAGGAACGAGCACATCCCCATTGTCATGTGTCCACCTGCTGGCCCCTGCC
4161 CCCACCAGGAGTGAAGCGGGCCATCCCATCCGCCCTCTGCTCCCAGCACTTGGGGCCAGCAGCTGCCTCCCGGAGCTGCA
4241 CTAAGTACCCCATCCAAAGCTGTCTGTCCCTCATTTCCCACAACCTGGTTTAGATATCACTTCTGATCTCTGTTCCAGAG
4321 ATCAGAGGAAGCCCCGGGGTCAGGTAAGTAGCCTCAGGGGCTCCCTTGGCCAGAGCTTCTGTTCAGGCGCTCTCCATGAA
4401 AGCAGCCCTGGAAAACTGAGCCTGAAGTCAGAGACAGCTCAGGCCCAGCACAGGGGGCAGTCCCTTGCCACTGGCTCGGG
4481 CCCTTCCCTGGACTTTTTGCCTTCCTCCATTTTTGCTTCTCTGGGTCTGTCTTCGTCCATGCCTGCTCTGAGATGCTCCC
4561 CCACCCCTCCCTGTACCTGGGACCACCGCCCTCTGGTGTTTTCTTTCTCCTGTGAGTCCCCCCCTGGATACTGCTGCTTT
4641 CTGGAAGGCTGTCCTGGGTTACGTCCTGCGCTCCTCTCCCTCCCACGCAAAGACAACCAGAAGGACAAGCCTTGAGCACG
4721 CCGATGCCCCAGCTCGTGGCTCCCCAGACCATCTGTTTCCCGTGAAGACGCCCCGCTCCCCGTGTCTGTGTCCTGCGTGT
4801 ATGTGTCGTGTCTTGTGTAGATTGTGAGCCCCCTGGGCAGGGATCCCTGTCTGCATACATGTTCCATGTGGCACGCCCAG
4881 GTGTGCTAATAAACGTTCATCTTCAGAACAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucUUGGAGCCGACCCCGCCCGa 5'
            | ||||  ||  ||||||| 
Target 5' gcATCCTCCTCTTTGGCGGGCt 3'
 1936 - 1957 160.00 -24.40
2 
miRNA  3' ucuuggAGCCGACCCCGCCCga 5'
                | || |||||||||  
Target 5' gtggtaTGGGATGGGGCGGGgg 3'
 2441 - 2462 144.00 -24.20
3 
miRNA  3' ucuuggaGCCG-ACCCCGCCCGa 5'
                 ||||  | ||:|||| 
Target 5' gttggggCGGCAAGCGGTGGGCc 3'
 2386 - 2408 135.00 -20.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31490739 11 COSMIC
COSN30542836 116 COSMIC
COSN1540017 257 COSMIC
COSN31578531 289 COSMIC
COSN31533004 300 COSMIC
COSN31535017 346 COSMIC
COSN26525297 798 COSMIC
COSN29439522 891 COSMIC
COSN23588186 1004 COSMIC
COSN10090203 1187 COSMIC
COSN15793650 1534 COSMIC
COSN26489370 2371 COSMIC
COSN19605077 2464 COSMIC
COSN30164447 2623 COSMIC
COSN2508374 2640 COSMIC
COSN8584386 2714 COSMIC
COSN26569205 2715 COSMIC
COSN28825035 2728 COSMIC
COSN1135586 2751 COSMIC
COSN31521720 2758 COSMIC
COSN31555438 2838 COSMIC
COSN31483841 2842 COSMIC
COSN31606222 2909 COSMIC
COSN31555443 2917 COSMIC
COSN28731386 2949 COSMIC
COSN5915958 3014 COSMIC
COSN25415731 3091 COSMIC
COSN23671010 3118 COSMIC
COSN30544871 3123 COSMIC
COSN15920893 3138 COSMIC
COSN28731475 3141 COSMIC
COSN20108341 3153 COSMIC
COSN31585760 3157 COSMIC
COSN31618028 3188 COSMIC
COSN16389581 3198 COSMIC
COSN29350591 3259 COSMIC
COSN21804185 3303 COSMIC
rs3741259 3749 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs749555398 1 dbSNP
rs1332389452 2 dbSNP
rs1046632411 4 dbSNP
rs558621458 8 dbSNP
rs189778032 11 dbSNP
rs1471691249 13 dbSNP
rs1163767505 16 dbSNP
rs1364444671 17 dbSNP
rs753134254 21 dbSNP
rs569580920 22 dbSNP
rs1038793726 23 dbSNP
rs755559433 25 dbSNP
rs1484214899 26 dbSNP
rs202186007 27 dbSNP
rs1209911476 28 dbSNP
rs1441467165 30 dbSNP
rs1248484090 33 dbSNP
rs561002493 34 dbSNP
rs769689841 39 dbSNP
rs1220385249 41 dbSNP
rs1326472037 49 dbSNP
rs1287592602 51 dbSNP
rs1053400416 63 dbSNP
rs1197378814 64 dbSNP
rs1263089725 70 dbSNP
rs752205455 71 dbSNP
rs928566605 72 dbSNP
rs529833746 75 dbSNP
rs186202749 76 dbSNP
rs1159926012 81 dbSNP
rs548801217 84 dbSNP
rs948718547 86 dbSNP
rs915869347 90 dbSNP
rs1469570813 93 dbSNP
rs1337711924 94 dbSNP
rs1315875291 102 dbSNP
rs1245796923 114 dbSNP
rs1204102406 117 dbSNP
rs1309206904 119 dbSNP
rs1350764829 120 dbSNP
rs759152240 125 dbSNP
rs111352609 126 dbSNP
rs963080627 134 dbSNP
rs908623804 142 dbSNP
rs983381814 145 dbSNP
rs3802949 146 dbSNP
rs1204695127 149 dbSNP
rs1459684272 151 dbSNP
rs546212000 154 dbSNP
rs1029885405 155 dbSNP
rs1417934337 155 dbSNP
rs1363348509 164 dbSNP
rs1317891365 179 dbSNP
rs998574050 182 dbSNP
rs975605382 185 dbSNP
rs902716284 188 dbSNP
rs1387251757 196 dbSNP
rs964354439 197 dbSNP
rs1017649240 199 dbSNP
rs1396179844 202 dbSNP
rs1390834876 207 dbSNP
rs1011237442 224 dbSNP
rs1347932556 246 dbSNP
rs1448033407 262 dbSNP
rs1224550708 268 dbSNP
rs1418420125 272 dbSNP
rs1321809086 276 dbSNP
rs375852156 278 dbSNP
rs1031407865 283 dbSNP
rs770874000 289 dbSNP
rs907011230 290 dbSNP
rs1198535368 297 dbSNP
rs1198188270 298 dbSNP
rs1045692300 299 dbSNP
rs1430008612 300 dbSNP
rs898458018 300 dbSNP
rs1172824126 304 dbSNP
rs760634457 314 dbSNP
rs948586503 316 dbSNP
rs1461602931 317 dbSNP
rs1037563478 319 dbSNP
rs1367476707 320 dbSNP
rs1406129419 323 dbSNP
rs1283129356 330 dbSNP
rs894481154 336 dbSNP
rs1038818134 339 dbSNP
rs1216680308 352 dbSNP
rs941364717 357 dbSNP
rs908642528 364 dbSNP
rs368480180 370 dbSNP
rs934172287 377 dbSNP
rs1490358439 379 dbSNP
rs866122911 381 dbSNP
rs921193491 382 dbSNP
rs1228458009 383 dbSNP
rs990046820 384 dbSNP
rs1420540024 388 dbSNP
rs773289636 391 dbSNP
rs1428117075 392 dbSNP
rs563362843 394 dbSNP
rs543376941 395 dbSNP
rs574596767 396 dbSNP
rs148702966 397 dbSNP
rs971103971 398 dbSNP
rs1289796988 405 dbSNP
rs964684752 406 dbSNP
rs1013723166 407 dbSNP
rs1359546640 411 dbSNP
rs1315353089 412 dbSNP
rs541507129 415 dbSNP
rs1033897044 417 dbSNP
rs1389958628 418 dbSNP
rs373148138 419 dbSNP
rs572182874 425 dbSNP
rs1216295434 426 dbSNP
rs780034323 432 dbSNP
rs957043404 435 dbSNP
rs1031857687 436 dbSNP
rs1184841077 437 dbSNP
rs545031192 443 dbSNP
rs78847698 444 dbSNP
rs958533519 445 dbSNP
rs1412330219 451 dbSNP
rs117566820 458 dbSNP
rs1344975237 459 dbSNP
rs1051152182 474 dbSNP
rs781475681 479 dbSNP
rs921057803 480 dbSNP
rs1272064123 488 dbSNP
rs1312252244 493 dbSNP
rs1352153427 494 dbSNP
rs538580466 497 dbSNP
rs757621115 498 dbSNP
rs1282632941 500 dbSNP
rs548384711 503 dbSNP
rs924296817 508 dbSNP
rs1038279683 512 dbSNP
rs1232824534 514 dbSNP
rs569933820 515 dbSNP
rs887083952 516 dbSNP
rs971011651 518 dbSNP
rs553326640 524 dbSNP
rs1047140904 525 dbSNP
rs1471160345 525 dbSNP
rs1178292860 526 dbSNP
rs934038064 529 dbSNP
rs1408556972 534 dbSNP
rs536401466 539 dbSNP
rs73496241 541 dbSNP
rs536205384 550 dbSNP
rs975585602 551 dbSNP
rs1330012769 553 dbSNP
rs1442286574 559 dbSNP
rs942868939 562 dbSNP
rs868074429 563 dbSNP
rs915502965 564 dbSNP
rs1162341573 569 dbSNP
rs182501346 571 dbSNP
rs957274848 572 dbSNP
rs924240230 573 dbSNP
rs751985312 574 dbSNP
rs1004229800 575 dbSNP
rs564033014 575 dbSNP
rs201235198 576 dbSNP
rs1439341960 577 dbSNP
rs1480281792 587 dbSNP
rs79712007 598 dbSNP
rs1024055481 599 dbSNP
rs1327579623 603 dbSNP
rs1368110018 606 dbSNP
rs1406734429 607 dbSNP
rs1283769032 608 dbSNP
rs1012786756 610 dbSNP
rs958540000 618 dbSNP
rs1017274700 623 dbSNP
rs1275155256 639 dbSNP
rs1273361140 641 dbSNP
rs1341696324 649 dbSNP
rs369763990 650 dbSNP
rs758877065 652 dbSNP
rs569057549 653 dbSNP
rs935810621 655 dbSNP
rs752221992 669 dbSNP
rs1280633364 671 dbSNP
rs78906365 672 dbSNP
rs1490308404 675 dbSNP
rs1197162589 677 dbSNP
rs1374488773 683 dbSNP
rs1444895867 688 dbSNP
rs1475551521 690 dbSNP
rs1387792161 691 dbSNP
rs903116077 691 dbSNP
rs368229816 692 dbSNP
rs566168274 695 dbSNP
rs901293882 704 dbSNP
rs552709640 714 dbSNP
rs1320017927 731 dbSNP
rs1326754543 733 dbSNP
rs916911847 743 dbSNP
rs942881366 751 dbSNP
rs915383132 767 dbSNP
rs1394727778 769 dbSNP
rs1340203908 771 dbSNP
rs1054455111 773 dbSNP
rs1208529495 774 dbSNP
rs72914250 774 dbSNP
rs1264340170 780 dbSNP
rs924188096 783 dbSNP
rs974285900 789 dbSNP
rs1192037373 798 dbSNP
rs1245798661 800 dbSNP
rs3019201 801 dbSNP
rs1407255631 803 dbSNP
rs1015855241 804 dbSNP
rs200117942 805 dbSNP
rs749365936 808 dbSNP
rs543704331 828 dbSNP
rs917028360 829 dbSNP
rs1363253078 831 dbSNP
rs991223045 832 dbSNP
rs1454695221 837 dbSNP
rs1315852977 848 dbSNP
rs191576157 854 dbSNP
rs958793002 858 dbSNP
rs1243265478 862 dbSNP
rs955395836 865 dbSNP
rs1016726975 872 dbSNP
rs1208486602 877 dbSNP
rs1265895684 881 dbSNP
rs1005794789 883 dbSNP
rs1183767776 885 dbSNP
rs1254908430 887 dbSNP
rs1421474722 888 dbSNP
rs996958905 901 dbSNP
rs951332845 903 dbSNP
rs1452841730 906 dbSNP
rs1156659657 907 dbSNP
rs1033484586 911 dbSNP
rs1000044125 912 dbSNP
rs1025503557 931 dbSNP
rs756028366 932 dbSNP
rs902976371 932 dbSNP
rs1309865748 935 dbSNP
rs560933104 936 dbSNP
rs1228214377 940 dbSNP
rs569765263 942 dbSNP
rs572475975 943 dbSNP
rs1039776982 946 dbSNP
rs1006943648 948 dbSNP
rs893969814 958 dbSNP
rs879214427 970 dbSNP
rs893837276 975 dbSNP
rs367922422 976 dbSNP
rs1482027950 977 dbSNP
rs936983522 980 dbSNP
rs760544501 981 dbSNP
rs558489981 982 dbSNP
rs559929641 982 dbSNP
rs941538749 982 dbSNP
rs34043604 997 dbSNP
rs1177500439 1001 dbSNP
rs1299941656 1003 dbSNP
rs1358792877 1003 dbSNP
rs983063854 1024 dbSNP
rs955593145 1026 dbSNP
rs1046666720 1030 dbSNP
rs949710487 1032 dbSNP
rs1224493523 1035 dbSNP
rs1300213825 1036 dbSNP
rs1310051999 1042 dbSNP
rs1229098792 1046 dbSNP
rs1327500094 1051 dbSNP
rs1482405546 1052 dbSNP
rs916883130 1055 dbSNP
rs1029897980 1070 dbSNP
rs1490472511 1075 dbSNP
rs1190377124 1076 dbSNP
rs1424781721 1077 dbSNP
rs975426429 1080 dbSNP
rs991648724 1081 dbSNP
rs1390869012 1085 dbSNP
rs1429120452 1087 dbSNP
rs1428138753 1088 dbSNP
rs1306783354 1098 dbSNP
rs1367969310 1100 dbSNP
rs1405988083 1105 dbSNP
rs964358447 1106 dbSNP
rs1365881629 1107 dbSNP
rs1033103627 1110 dbSNP
rs545150195 1113 dbSNP
rs576409707 1114 dbSNP
rs187149170 1118 dbSNP
rs1020062743 1122 dbSNP
rs374984899 1124 dbSNP
rs536539106 1130 dbSNP
rs895755324 1133 dbSNP
rs115999571 1137 dbSNP
rs537198768 1139 dbSNP
rs761684761 1141 dbSNP
rs898787643 1147 dbSNP
rs1242798802 1148 dbSNP
rs147371444 1150 dbSNP
rs940425954 1151 dbSNP
rs1387115538 1153 dbSNP
rs1280229537 1163 dbSNP
rs908737849 1164 dbSNP
rs1164613487 1167 dbSNP
rs1350512529 1182 dbSNP
rs1295789145 1186 dbSNP
rs1018237042 1187 dbSNP
rs1007300884 1190 dbSNP
rs1047242735 1192 dbSNP
rs893926506 1195 dbSNP
rs1316558365 1196 dbSNP
rs181761229 1206 dbSNP
rs999720790 1207 dbSNP
rs1288980133 1212 dbSNP
rs902662229 1223 dbSNP
rs975623966 1225 dbSNP
rs1318561972 1228 dbSNP
rs763223853 1231 dbSNP
rs1216232324 1236 dbSNP
rs964119007 1238 dbSNP
rs1312192212 1239 dbSNP
rs1046688608 1242 dbSNP
rs925940573 1243 dbSNP
rs552505153 1251 dbSNP
rs949574810 1269 dbSNP
rs895395940 1271 dbSNP
rs1055498587 1272 dbSNP
rs1160330817 1279 dbSNP
rs1388306535 1283 dbSNP
rs1455347575 1285 dbSNP
rs557686181 1290 dbSNP
rs1359251973 1294 dbSNP
rs1446637205 1296 dbSNP
rs1282425623 1299 dbSNP
rs1375402961 1315 dbSNP
rs1224222799 1319 dbSNP
rs1326728736 1323 dbSNP
rs1207070516 1338 dbSNP
rs1265216253 1339 dbSNP
rs909655795 1340 dbSNP
rs1020301123 1341 dbSNP
rs1428175756 1343 dbSNP
rs1236280009 1347 dbSNP
rs1420467100 1361 dbSNP
rs1183486468 1379 dbSNP
rs1014053572 1380 dbSNP
rs1471783057 1394 dbSNP
rs1178218355 1397 dbSNP
rs569906129 1400 dbSNP
rs1413451610 1413 dbSNP
rs1474265817 1423 dbSNP
rs959829857 1434 dbSNP
rs1410362134 1438 dbSNP
rs746033599 1441 dbSNP
rs1486914271 1443 dbSNP
rs1001855711 1446 dbSNP
rs929825114 1453 dbSNP
rs898865028 1456 dbSNP
rs1345946490 1457 dbSNP
rs550096567 1458 dbSNP
rs1276632803 1463 dbSNP
rs1004658312 1467 dbSNP
rs886204028 1471 dbSNP
rs530309912 1473 dbSNP
rs1295827144 1476 dbSNP
rs1215880891 1480 dbSNP
rs1202003820 1493 dbSNP
rs1353024355 1496 dbSNP
rs976641089 1500 dbSNP
rs373861178 1504 dbSNP
rs1018602282 1509 dbSNP
rs1421040787 1510 dbSNP
rs1429809489 1511 dbSNP
rs547736984 1516 dbSNP
rs1167954193 1517 dbSNP
rs527794189 1525 dbSNP
rs922763339 1527 dbSNP
rs1330262220 1530 dbSNP
rs1436037935 1532 dbSNP
rs1320074446 1534 dbSNP
rs958262626 1535 dbSNP
rs1296288387 1537 dbSNP
rs1032448162 1538 dbSNP
rs999575019 1539 dbSNP
rs1040015203 1546 dbSNP
rs902683217 1547 dbSNP
rs565336296 1548 dbSNP
rs1172816595 1558 dbSNP
rs1449581065 1560 dbSNP
rs112630956 1563 dbSNP
rs979190955 1565 dbSNP
rs1426511307 1566 dbSNP
rs1417279894 1568 dbSNP
rs1389768388 1569 dbSNP
rs1403380748 1570 dbSNP
rs946039008 1572 dbSNP
rs1367583006 1573 dbSNP
rs1435971842 1576 dbSNP
rs1188703193 1581 dbSNP
rs1296994335 1584 dbSNP
rs1363040323 1585 dbSNP
rs913325248 1586 dbSNP
rs1266531592 1590 dbSNP
rs1476498715 1597 dbSNP
rs1356169012 1607 dbSNP
rs1208397039 1608 dbSNP
rs1269680527 1608 dbSNP
rs576342702 1630 dbSNP
rs1249000830 1632 dbSNP
rs1207664307 1638 dbSNP
rs1055765940 1640 dbSNP
rs562655012 1641 dbSNP
rs542970111 1648 dbSNP
rs1367818132 1652 dbSNP
rs1471712300 1654 dbSNP
rs1253376799 1656 dbSNP
rs1048151387 1658 dbSNP
rs1389041961 1663 dbSNP
rs992831526 1665 dbSNP
rs1320071877 1669 dbSNP
rs1386617823 1673 dbSNP
rs11230730 1678 dbSNP
rs1314112253 1684 dbSNP
rs573954540 1687 dbSNP
rs1243187659 1688 dbSNP
rs1290627913 1691 dbSNP
rs566002129 1700 dbSNP
rs929689278 1706 dbSNP
rs1207732819 1710 dbSNP
rs1332152201 1722 dbSNP
rs918334006 1723 dbSNP
rs1200501668 1727 dbSNP
rs138264335 1732 dbSNP
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rs1184207255 1742 dbSNP
rs1412452650 1752 dbSNP
rs1472134643 1764 dbSNP
rs1233330702 1774 dbSNP
rs1357353181 1776 dbSNP
rs533740176 1777 dbSNP
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rs1390684123 1809 dbSNP
rs980071292 1818 dbSNP
rs911166229 1821 dbSNP
rs577667144 1824 dbSNP
rs985760599 1830 dbSNP
rs1351553983 1838 dbSNP
rs1228163219 1842 dbSNP
rs1286116902 1851 dbSNP
rs150889472 1856 dbSNP
rs1016157027 1862 dbSNP
rs758899369 1863 dbSNP
rs1004964305 1872 dbSNP
rs1165807166 1873 dbSNP
rs1342186908 1874 dbSNP
rs1207278869 1891 dbSNP
rs1252442824 1898 dbSNP
rs925233502 1922 dbSNP
rs1179718692 1926 dbSNP
rs886066841 1927 dbSNP
rs1030126471 1928 dbSNP
rs997261828 1933 dbSNP
rs978082552 1936 dbSNP
rs1464602418 1952 dbSNP
rs1053851301 1957 dbSNP
rs966817143 1959 dbSNP
rs935430907 1966 dbSNP
rs1025049122 1973 dbSNP
rs1013783545 1975 dbSNP
rs1040260013 1976 dbSNP
rs537531781 1980 dbSNP
rs536029271 1981 dbSNP
rs1306589805 1991 dbSNP
rs569944781 1997 dbSNP
rs1006850825 1998 dbSNP
rs550789669 2005 dbSNP
rs1370130998 2016 dbSNP
rs888122515 2023 dbSNP
rs570181485 2027 dbSNP
rs1309998545 2033 dbSNP
rs1043279103 2034 dbSNP
rs1275321708 2066 dbSNP
rs1048089817 2073 dbSNP
rs1341391828 2075 dbSNP
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rs1202886061 2089 dbSNP
rs1466890152 2098 dbSNP
rs532575843 2099 dbSNP
rs866883610 2102 dbSNP
rs1488649814 2103 dbSNP
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rs1266942021 2114 dbSNP
rs1452705431 2123 dbSNP
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rs1390814273 2141 dbSNP
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rs2241001 2161 dbSNP
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rs911020138 2172 dbSNP
rs1258372032 2174 dbSNP
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rs1023975002 4774 dbSNP
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rs1026637870 4801 dbSNP
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rs1057547 4812 dbSNP
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rs760741608 4817 dbSNP
rs1383724979 4832 dbSNP
rs1051152926 4840 dbSNP
rs575974218 4845 dbSNP
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rs1162720800 4853 dbSNP
rs186885580 4859 dbSNP
rs1337034865 4868 dbSNP
rs968827640 4871 dbSNP
rs1021697820 4874 dbSNP
rs1368867290 4875 dbSNP
rs1487764134 4876 dbSNP
rs1207294417 4878 dbSNP
rs1189323762 4881 dbSNP
rs1010424997 4884 dbSNP
rs956170644 4894 dbSNP
rs935303988 4895 dbSNP
rs1035951047 4909 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucuuggagccgaccCCGCCCGa 5'
                        ||||||| 
Target 5' ------------uuGGCGGGCu 3'
 		1 - 10
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BAC
Disease MIMAT0019808
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... "PAR-CLIP data was present in GSM1020023. RNA binding protein: AGO2. Condition:EBV B95-8-infected ...

- Skalsky RL; Corcoran DL; Gottwein E; Frank et al., 2012, PLoS pathogens.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ucuuggagccgaccCCGCCCGa 5'
                        ||||||| 
Target 5' ------------uuGGCGGGCu 3'
 		1 - 10
Article - Skalsky RL; Corcoran DL; Gottwein E; Frank et al.
- PLoS pathogens, 2012
Epstein-Barr virus (EBV) is a ubiquitous human herpesvirus linked to a number of B cell cancers and lymphoproliferative disorders. During latent infection, EBV expresses 25 viral pre-microRNAs (miRNAs) and induces the expression of specific host miRNAs, such as miR-155 and miR-21, which potentially play a role in viral oncogenesis. To date, only a limited number of EBV miRNA targets have been identified; thus, the role of EBV miRNAs in viral pathogenesis and/or lymphomagenesis is not well defined. Here, we used photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP) combined with deep sequencing and computational analysis to comprehensively examine the viral and cellular miRNA targetome in EBV strain B95-8-infected lymphoblastoid cell lines (LCLs). We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs. 24 PAR-CLIP-identified miRNA:3'UTR interactions were confirmed by reporter assays. Our results reveal that EBV miRNAs predominantly target cellular transcripts during latent infection, thereby manipulating the host environment. Furthermore, targets of EBV miRNAs are involved in multiple cellular processes that are directly relevant to viral infection, including innate immunity, cell survival, and cell proliferation. Finally, we present evidence that myc-regulated host miRNAs from the miR-17/92 cluster can regulate latent viral gene expression. This comprehensive survey of the miRNA targetome in EBV-infected B cells represents a key step towards defining the functions of EBV-encoded miRNAs, and potentially, identifying novel therapeutic targets for EBV-associated malignancies.
LinkOut: [PMID: 22291592]
CLIP-seq Support 1 for dataset GSM1020023
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC / EBV B95-8-infected, 4-thiouridine, RNase T1
Location of target site ENST00000263846.4 | 3UTR | UUGGCGGGCUGGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22291592 / GSE41437
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000263846.4 | 3UTR | UUGGCGGGCUGGGGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
91 hsa-miR-4707-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT442514 SYT7 synaptotagmin 7 2 4
MIRT457799 NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 2 2
MIRT466318 THRA thyroid hormone receptor, alpha 2 2
MIRT486129 TRAF3 TNF receptor associated factor 3 2 2
MIRT492341 SEPT8 septin 8 2 2
MIRT495690 KCNC3 potassium voltage-gated channel subfamily C member 3 2 2
MIRT496928 DPYSL5 dihydropyrimidinase like 5 2 2
MIRT499518 MAFK MAF bZIP transcription factor K 2 2
MIRT501367 REXO1 RNA exonuclease 1 homolog 2 4
MIRT501636 PIAS4 protein inhibitor of activated STAT 4 2 4
MIRT521071 SLC25A16 solute carrier family 25 member 16 2 2
MIRT525700 PCYT2 phosphate cytidylyltransferase 2, ethanolamine 2 2
MIRT532722 DDTL D-dopachrome tautomerase like 2 2
MIRT533137 WWC1 WW and C2 domain containing 1 2 4
MIRT537288 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT570555 PHF21B PHD finger protein 21B 2 2
MIRT573469 MTRNR2L9 MT-RNR2-like 9 2 2
MIRT576750 Tmem127 transmembrane protein 127 2 2
MIRT609342 DAAM2 dishevelled associated activator of morphogenesis 2 2 2
MIRT610638 PIGM phosphatidylinositol glycan anchor biosynthesis class M 2 2
MIRT612591 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT614237 WDR53 WD repeat domain 53 2 4
MIRT622784 PGK1 phosphoglycerate kinase 1 2 2
MIRT628880 MED16 mediator complex subunit 16 2 2
MIRT629550 SPN sialophorin 2 2
MIRT634714 DDX19B DEAD-box helicase 19B 2 2
MIRT634932 GTF2H2C GTF2H2 family member C 2 4
MIRT635341 RBL1 RB transcriptional corepressor like 1 2 2
MIRT637838 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT644311 NFKBID NFKB inhibitor delta 2 2
MIRT649206 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT657262 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT658919 DPY19L4 dpy-19 like 4 2 2
MIRT663608 SEC23B Sec23 homolog B, coat complex II component 2 2
MIRT667425 MFAP2 microfibril associated protein 2 2 2
MIRT667667 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT668144 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT668540 ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 2 2
MIRT670039 NFRKB nuclear factor related to kappaB binding protein 2 2
MIRT670875 RAB10 RAB10, member RAS oncogene family 2 2
MIRT672694 ZNF677 zinc finger protein 677 2 2
MIRT673107 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT673508 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT674244 NUP62 nucleoporin 62 2 4
MIRT676541 IRGQ immunity related GTPase Q 2 2
MIRT676787 CXorf38 chromosome X open reading frame 38 2 4
MIRT677600 PRKX protein kinase, X-linked 2 2
MIRT678607 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT678940 MYADM myeloid associated differentiation marker 2 2
MIRT679104 CD99 CD99 molecule (Xg blood group) 2 2
MIRT679196 WNT2B Wnt family member 2B 2 2
MIRT679325 ZMYM4 zinc finger MYM-type containing 4 2 2
MIRT679634 BRMS1L breast cancer metastasis-suppressor 1 like 2 2
MIRT679819 TMEM106B transmembrane protein 106B 2 2
MIRT679898 FBXO48 F-box protein 48 2 2
MIRT680579 ZNF784 zinc finger protein 784 2 2
MIRT680600 SZT2 SZT2, KICSTOR complex subunit 2 2
MIRT682991 RNF40 ring finger protein 40 2 4
MIRT683483 ZNF7 zinc finger protein 7 2 2
MIRT683681 MICA MHC class I polypeptide-related sequence A 2 2
MIRT684122 CEP104 centrosomal protein 104 2 2
MIRT684774 MYO1F myosin IF 2 2
MIRT685698 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT686471 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT687940 HMGB1 high mobility group box 1 2 2
MIRT688627 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 2
MIRT689110 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT690063 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT691067 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691317 KIAA1841 KIAA1841 2 2
MIRT692778 SYNPO2L synaptopodin 2 like 2 2
MIRT694087 KIAA0930 KIAA0930 2 2
MIRT696148 WDR59 WD repeat domain 59 2 2
MIRT696176 GNB5 G protein subunit beta 5 2 2
MIRT696434 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT697974 TSPAN6 tetraspanin 6 2 2
MIRT698917 SPEM1 spermatid maturation 1 2 2
MIRT699312 SLC35F5 solute carrier family 35 member F5 2 4
MIRT700500 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700557 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT701817 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702045 METTL21A methyltransferase like 21A 2 2
MIRT702215 LPCAT1 lysophosphatidylcholine acyltransferase 1 2 2
MIRT702337 KLHL7 kelch like family member 7 2 2
MIRT704139 DNAL1 dynein axonemal light chain 1 2 2
MIRT704189 LDHD lactate dehydrogenase D 2 2
MIRT705344 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706097 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 2 2
MIRT709068 FAHD1 fumarylacetoacetate hydrolase domain containing 1 2 2
MIRT717579 VTA1 vesicle trafficking 1 2 2
MIRT722440 ZBTB7B zinc finger and BTB domain containing 7B 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4707 Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Fluorouracil 3385 NSC19893 approved resistant High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4707 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-4707 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-4707-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-4707-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-4707-3p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-4707-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-4707-3p Neoadjuvant chemotherapy resistant tissue (breast cancer)
hsa-miR-4707-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)

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