miRTarBase - #MIRT442523


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pre-miRNA Information
pre-miRNA hsa-mir-19a   
Genomic Coordinates chr13: 91350891 - 91350972
Synonyms MIRN19A, hsa-mir-19a, miR-19a, miRNA19A, MIR19A
Description Homo sapiens miR-19a stem-loop
Comment This sequence maps to chromosome 13 and is named miR-19a precursor-13 in reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-19a-5p
Sequence 14| AGUUUUGCAUAGUUGCACUACA |35
Evidence Experimental
Experiments Cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs756288295 2 dbSNP
rs1051963210 6 dbSNP
rs780315531 8 dbSNP
rs1162564162 9 dbSNP
rs1170543143 13 dbSNP
rs1388542964 15 dbSNP
rs1442807536 18 dbSNP
rs1403138754 20 dbSNP
rs764765453 21 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Biomarker Information
Biomarker ID Name Type Discovered From Mode Level Source Testing Methods
BST0O9 miR-19a Predictive Biomarker (PRD) Clinical/Experimental Data Expression Decrease Tumor tissue Quantitative real-time PCR
Gene Information
Gene Symbol MOB3B   
Synonyms C9orf35, MOB1D, MOBKL2B
Description MOB kinase activator 3B
Transcript NM_024761   
Expression
Putative miRNA Targets on MOB3B
3'UTR of MOB3B
(miRNA target sites are highlighted)		 
>MOB3B|NM_024761|3'UTR
   1 TGCTCCACCTCACCCTTTGGAAGAAAGGAAAGCTGTTTCCTCCTGGTGCCCTGAGCGGGCAGGAGGTGGACCACCCTGGC
  81 TGAAATGACACACCTACTCCCAGGAACAGCAGAGGTGGAGGCAAGCAGTGACTCCTGAGAGACATTCCCCACTCACTTTG
 161 TGTGCTCTTAACCTTCTGAGTGCTGCTAGCCCAGACCTGTGGACGAGGCAGACCACAACGTGAAAGAAGGACCAGCCCCT
 241 TGACCGTTCTGGCTGGGGAATTGTCCACGAGGAAGCCTCTGCACTTCCACACATGGCACAGTTCTGCCTGTGACCTGCCG
 321 CCTAAGCTTTACTGGAATTCAGGTTTTGAGACTGAGATGCGTGTTCGTATTTTTCCACTTATCTGTCTTGTCAGCTGGCC
 401 GACTTCTCTGTGATTGGTTTTTTAAGTGCCGGGTGAATTTTGGACCTCTGGATGTGCAGCAAGTTTTTATGCAATAAGCC
 481 TTCCTTTCAGGTCTCTAAAAGCTCCTGCTCTGATCTGTGGTTTAACACTGTGCAGGGCTGTGGAGCTCTGAGACACCTGA
 561 ACCCCTACCCATCCCCTGCACCTCCCTACTCTCCCTGCCGAGGCGTCCATAGCATTTCCCTAATAAATAGTTTTATCAGG
 641 GACACTCCATGGGGTGGCTTGTCTCTGCCCCAAACAGGGTCTTCACGTTCTAACTGCAGGGAAGAGACTGGTTACTAGCG
 721 TAAAGCTGACAAGTTACCAGTTCACCTGATCAGAATGTATTTTTTATAACCACCATCATTCCTTGTCTCTTCAGTGGAAG
 801 ATATTCTTTCCTGTTTCCCAGAAGAGAGAAATAAAAGTCCTAAATAACTAAGAATGATCAGCGGGAGCGTTGGGCATGAT
 881 TACTGCAGTGTTTGTTCTTTATTAAAGACAGGGAGTCGTGGCTGTCTCTACATAATACTAACATTTCAGTGAAAAAAGTA
 961 CAATTGGTTATTTGGTACGTGTAGATTTAACACCCAGACGGCTGACTTGTAACCCTCCCCACTAGCCTTCTGAGCATTTA
1041 AACCCAGCCGTCATTCTCTCCCCACTCCACGCTCCCCACTCCTCTGCCACGTTATGTTACGGCACAAAATTAATTTCTGC
1121 CCCTGTGATTGGGCCACGGTTGCCAAGGTAACAGTGGAGCTGGAGCTAACTTCCTTCTTTCATCCTTTCCAATTTTTCTA
1201 TTCCAGAAGACAGTCAGAATAATGCATTCTGTACTACATCCTGCCTTTTGAAACCTAAATGAGTTTTCGTTGATGAAATG
1281 TTGCCTTCTCTGATTCATTCACAAAACTGTGGTGGTTCTGACCACCTGTGACGAGGGGGGTCATAATACTTCCAGTGATC
1361 CTTTTAATTTAGCAAAATATTTGTCGGTGGAGGGAAGTAGATAAGAATGTATTAGTGTATTTTAAAGTAATAATGATTAA
1441 AGAATAACTAAATGACTCTGATTTTGTTTTATCAATCATAATGTGTTAAAGCCCTCTGTGGCTGCCACAAAAGACTAGAA
1521 TCATGAAATCTTTGTCCAAGCTAAGAAAGGGCTGTCTCTGTGGGTACAGTGGCATTCTCTGTTGACCTAACCAAGCAGCC
1601 TGAACCTTGCTTTGTGTCTCGTAAAGGTCATCTCACGGAATCCAATTGCTGCTACCTCACCATGTTGCTGTGCCCTGGTC
1681 AACAATAAACATACTTTTGTCCCCCTTCCTAAGTAACTTTGAGAGGACAAGATAGGCAAAGTTTTTTCCCTACATCTCTT
1761 TTGGCCAAAAGAATATCTGACCATCACAGAGATCCAGAGAACAGAAACAAGAGCCCCTAAGTCCCAGCCTCTGCAATACA
1841 CAGTTACCAGATGGGAATGCAGCACAGTGGCACAGAGAGGTAACTACGGAGCCCATGCCCTGGAGGAACTCTGTAGCTGT
1921 GCATCATGGAACGCCACAGGATTTTTACATTAAAAAGTTGAATATGTTCCTGCATTTCAGCAGTGCATAATCGAGCAGGA
2001 GGCTGGAATCTGGAGACCTTTGTTATTCATTCTTTTTAAGGTTATTTTTTATTAACTGTGCATATGAAATTTCCACTCAA
2081 TTTAAAAATCCAAATCTTTTTAAGCTTCTTGGAAGAATTTCCTCCTGCTTATATTGTTAATTGCACTAATGAACTCTTCT
2161 AGGGTAAATTCTGGCAAACTACCCTTTTTTTTTTTTTAATCACAGAATATTCCTGTTCCCACAGAACTTTGGCACATTCT
2241 GAAGAAAATCTCTGCAGTCAATTTTTATCTCCTCTGCTTGACTGCATCTAACTGTTCATCTCTGTTATAAATGGAGCTTC
2321 AGCCCTCTGGGTCAGAGACTGACAACCCTCCTTCTTCTTCCTAACCTGTCCTACTCTCCTTCTTTTTCTGCTTTCATTTT
2401 AATTTTGGGAAATTTTAAAGTAAAAGTTTCAAAGTTGAAAGATTATAGTGAGTACCCTTATGTCCTTTAGTGCATCAGTT
2481 GTTAATGTTTTGCCTTGTTTTCTTTTCTTCCTTTTTTTTTTTTAAGAGAAGGGGTCTCTCCCTATTTTACCCAAGCTGGC
2561 CTTGAACCCCTTGCCTCAAGTGAGCTTCAACCTTAGCCTCCTGAGTAGCCAGGACTATGGCATGTACCACCGCACCTGCC
2641 TCACATTTTCTTTCTCACTGTAAATACACATTCTTATTCTTGAACCTTCTGAAAATAAGTTGCAGACATCATGAAAATGT
2721 AAAATACTTCATCATATTCTTTCTTTTAATAAGAGCATTGTCCTATAAATCTGCAATATTTTCACGCCCATGAAACTGAA
2801 CACTGATACTGCATAAATCTAATATATGATCCATATTCAAAATTCTCCAGTTGTCCCCAAAATATCCTTTATAGCTGTTT
2881 ATTTTTAAATCCAGGATCCAATCAAGAATTATACGTTATATGTAGTTGTCATTCTCTTTTGTTTCCTTTAATTGATTAGA
2961 GTTGCCCTTTTGTGTGTGTCTGAGTGGTGGGTGGTGGGGTGGTGTTTGTGTATGATGTGCAGTGTGTGTGTGTGTGGTGT
3041 GTCTTTCATGACACTGACATTATTAAAGAGTTCAGGCAAGTTTGTGGAATGTCCCACAATCTAGACTTTTTTACTGATTG
3121 TTTCCTCATTACGAGATACAGGTTACATTTTTTTTCCCAAGACTGCTACATGTGTGATGTTGTTTCCTTACTACTGCCTC
3201 ACCTCAGGAAGCACATAATGTCTACTTGTCTCTTTTCTGATATTAGGACTGATCAGGTGTTGTCTGCCTGATCCAATCAT
3281 TATCAAGTTCCATAATTCATTATTAAGCTCTGAAATTCAGGACACATACATTTATAGAGTGTGAGGCTGTGCATACGTAC
3361 ATTCATCCCTTAATGTTCTCAAGGAGGCCCAGGATCCCCAAAATATTATAAGCATTGCAGTCAGATGATATAGCACTAGC
3441 AAAGCATTCATCCCTTTCCATATAACAGGAGGGAGGGGAAGAAGGAAGTTTCCATGTGCAGGCAATACGTGAGAGCATGG
3521 GCAAGTGAGGATTTGTATGCTCCCTGTAGCCAGAGGTGAAATATTCAACGCTTTTATTTTTTCTCCCGTCTTCAATGACC
3601 TCCCATTTGGACCCATAGTTTATTTATAGAGAGCACACACTCCCTAATTGTCAGATGGTTTTTTTGGGAAAACTCTTAGA
3681 TAGTACAGTGAGTTGTGACCCTCCAAAGGATCACAAGTACATAAACAGATACAAAGTATTTATGTGGTATTAAAATTTCA
3761 TGGTGATGGTGCAAGGGAGAGATGATTAGGAAGAAAATGTCTTACACGGCTGTAATTGAGAAATACTGATCTAGAGTCAT
3841 TTCCTGCTTCTTAAATTGTTCGTTTTCTCTTCCCTGGGTATTTTCTCATTTCCAAAGACCCAGAGTCTCAGAGCCAGGTT
3921 AAGTGGAAGAAACTTTGAGAGGTTTCTTAATCAATTCCTTCTATCTCTCAAACCATGCCAGTAACTTCCTTGGTGAAAAA
4001 ATCTATACTCCTCTCACAGTTCTTCGGGCATGGAAATTCTATAGCATTCTTTGGTATAACCAACCCACTGAACCCTCCAC
4081 AACATCTTGAATTCCATTCAACTCGAGCTGAAGTATTCTTTTTGAGTTTCAGTATATCTTTTCTAGTGTCCCACTTTTAG
4161 AAAGGTCCAAAGATGATATATAATAAGTGAAAATACAATTAATCAGAGCTTTATTTGCATATCCATTAAATATCTGAAGG
4241 CTATTACCAGTTGTGCTTCAGCCTCCTTTCCCTTGCAATTCTCCCAGGGTGGCATCCTCTACGGAGTCTTGTTGCTCCAT
4321 TGTTGACCACTGATGTAACTCAACGTGAAACCTTCCCAAAGCTCTCCACATCACTCTCTGTTATGGCTGTGACCAGCAGT
4401 GAACATGAAAAGAACTTATTTCATGCCTTCTCCAAACTATATTGTTTCTTTGCTAAGTCCAGACCTGCTTTTTCTACATT
4481 TATAGGTTTTCTATTTTAATCGCCATGCAAAATTCTTTATCATACTCAATCATTTTGGTTTATCTTCCTGACTTCTTACC
4561 TTTAACATCCCTGTTAAAGATTACACTGTTGTTGTTTCAAAAAAAAAAAAAAAAAAACCTTAATTGGCAAAACATTAAGG
4641 GACTTGAATAGAATTACACTTATCTTTTTGTGCTGATTTATGTCAATCCATCATTCTGGTTATTGATGGAAGCAAATTGC
4721 TTCCTATGTTCTCTAAACCTTATGTCCCTTCCATACTCCATGAGTACCACACTGGGAGAAAACAAAAGCAAAAAGATTGT
4801 GGGAAAAGTATAGCCATTATCTTTGAGGAAATGTGTACCAAGGCACAATCATTAAAAGGAGTTGGAGGCATCATTTGGTT
4881 GACACTGTTGTCATTCTTGTTCTGATCATTTTGGACCTTGAAGAAATTGGTGATTCTCTCCTAGAATTAGACAAACAAAG
4961 TGTGTTTGGAAATAATGATTGTTTTCCTGCCTTAAAAAATATATTAACAGAAAGCTTTTATAACAGGCTGTTTCCCTCTG
5041 GACAGGTATTAATTCTGAGTAAGAATTTTCAGTGACTACATAAGGATTTGTGTAACTTATGAAGGAAGAGTCCATTTCTA
5121 ATCAAATAATTCGCCTGTTTTACTAGCTTATAGTGATCTGATTTCAGAATTTTCCTGTATCTTTTTTACATACATCAGAA
5201 AAAGAAATGTTTACTATATTTTTGGTTCCATTTATGATTGTATTAAGCATTTGACTATAAGGAAAACTAACAATTAAATC
5281 AATTAGAAAAGCAACATAAAATTAAATGATATTTAGGAAATCAGTTATATGTGAGCTTGGGTATTCAAATGTCACAAATA
5361 AAAAGCATATAACCATTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acaucacGUUGAUACGUUUUGa 5'
                 :||:|: ||||||| 
Target 5' aaaacctTAATTG-GCAAAACa 3'
 4614 - 4634 150.00 -7.70
2 
miRNA  3' acAUCACGUU---GAUACGUUUUGa 5'
            || | :||   | ||||||||: 
Target 5' tcTATTTTAATCGCCATGCAAAATt 3'
 4490 - 4514 144.00 -8.70
3 
miRNA  3' acAUCACGUUGAUACGUUUUGa 5'
            ||  || |||| |||||:| 
Target 5' gaTATAGC-ACTA-GCAAAGCa 3'
 3427 - 3446 142.00 -10.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30185266 5 COSMIC
COSN30184694 9 COSMIC
COSN30478036 9 COSMIC
COSN30454233 20 COSMIC
COSN1377276 22 COSMIC
COSN26984854 33 COSMIC
COSN14679320 71 COSMIC
COSN30161984 72 COSMIC
COSN31610782 143 COSMIC
COSN30172929 212 COSMIC
COSN20076791 320 COSMIC
COSN31590911 479 COSMIC
COSN21427654 565 COSMIC
COSN16308675 612 COSMIC
COSN28787737 793 COSMIC
COSN30175941 863 COSMIC
COSN8520437 899 COSMIC
COSN28668745 963 COSMIC
COSN8520436 974 COSMIC
COSN7564457 1071 COSMIC
COSN27373902 1206 COSMIC
COSN30172300 1556 COSMIC
COSN24303019 1740 COSMIC
COSN31577036 1741 COSMIC
COSN23813353 2182 COSMIC
COSN27419472 2184 COSMIC
COSN32057346 2184 COSMIC
COSN20106102 2185 COSMIC
COSN9462708 2507 COSMIC
COSN14775451 2753 COSMIC
COSN9281301 2862 COSMIC
COSN16033856 2935 COSMIC
COSN21511158 3699 COSMIC
COSN32056830 4275 COSMIC
COSN2318758 4341 COSMIC
COSN20626636 4360 COSMIC
COSN27039664 4412 COSMIC
COSN14764516 4525 COSMIC
COSN20106101 4587 COSMIC
COSN20091905 4594 COSMIC
COSN20106098 4598 COSMIC
COSN2318757 4598 COSMIC
COSN27192875 4598 COSMIC
COSN20106099 4599 COSMIC
COSN20106100 4599 COSMIC
COSN28246087 5040 COSMIC
COSN18956360 5155 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1436660606 2 dbSNP
rs371091836 3 dbSNP
rs377467078 5 dbSNP
rs766593518 8 dbSNP
rs1445733072 10 dbSNP
rs1400710590 11 dbSNP
rs1200851497 13 dbSNP
rs767171147 18 dbSNP
rs757254079 19 dbSNP
rs1424377916 20 dbSNP
rs1173229251 24 dbSNP
rs751386695 25 dbSNP
rs201496531 29 dbSNP
rs775753898 33 dbSNP
rs1051288608 36 dbSNP
rs765413541 38 dbSNP
rs1208475551 39 dbSNP
rs1268356556 40 dbSNP
rs1442349344 42 dbSNP
rs759942373 45 dbSNP
rs1219285450 47 dbSNP
rs1240560566 48 dbSNP
rs1349471732 49 dbSNP
rs1317154088 51 dbSNP
rs533794383 55 dbSNP
rs1264759860 56 dbSNP
rs1321034304 58 dbSNP
rs3739530 71 dbSNP
rs186229664 74 dbSNP
rs559554236 77 dbSNP
rs1448250831 89 dbSNP
rs1190329141 92 dbSNP
rs974281886 95 dbSNP
rs1481040114 98 dbSNP
rs1202103622 109 dbSNP
rs536030982 115 dbSNP
rs1427597808 117 dbSNP
rs962954953 120 dbSNP
rs951304236 125 dbSNP
rs1387340717 127 dbSNP
rs1399029248 134 dbSNP
rs542715696 135 dbSNP
rs1339827896 137 dbSNP
rs577173619 139 dbSNP
rs1197410897 149 dbSNP
rs1232198777 151 dbSNP
rs1342627039 151 dbSNP
rs1255248492 154 dbSNP
rs1035088155 160 dbSNP
rs1282912146 167 dbSNP
rs2145928 169 dbSNP
rs1490667056 172 dbSNP
rs974073805 174 dbSNP
rs550772128 182 dbSNP
rs773051698 205 dbSNP
rs958747375 210 dbSNP
rs1480321935 216 dbSNP
rs181248911 218 dbSNP
rs1365834699 219 dbSNP
rs749224472 220 dbSNP
rs369434254 222 dbSNP
rs879726904 242 dbSNP
rs1426586768 245 dbSNP
rs1304906876 246 dbSNP
rs780059990 249 dbSNP
rs755903979 252 dbSNP
rs1307420536 253 dbSNP
rs1337208426 255 dbSNP
rs1020902376 263 dbSNP
rs1236391392 266 dbSNP
rs1335768478 282 dbSNP
rs1010481825 293 dbSNP
rs893427817 296 dbSNP
rs890802771 300 dbSNP
rs1247456221 306 dbSNP
rs570931952 315 dbSNP
rs1053344855 317 dbSNP
rs1050835569 320 dbSNP
rs936348989 328 dbSNP
rs190037238 346 dbSNP
rs1402113728 352 dbSNP
rs186377252 358 dbSNP
rs943807438 360 dbSNP
rs1471147799 361 dbSNP
rs912382998 366 dbSNP
rs751845692 367 dbSNP
rs1446538425 369 dbSNP
rs1161683263 381 dbSNP
rs1383383560 382 dbSNP
rs899991780 387 dbSNP
rs983061868 390 dbSNP
rs1365548542 393 dbSNP
rs929841108 397 dbSNP
rs1185487858 400 dbSNP
rs1038542316 401 dbSNP
rs148864929 405 dbSNP
rs941606994 406 dbSNP
rs548933400 426 dbSNP
rs1247619664 430 dbSNP
rs530296717 431 dbSNP
rs919851218 432 dbSNP
rs983457051 435 dbSNP
rs1253557750 437 dbSNP
rs563044495 441 dbSNP
rs1337883822 445 dbSNP
rs958713548 446 dbSNP
rs927309912 449 dbSNP
rs1198347425 451 dbSNP
rs180734589 456 dbSNP
rs1440692012 463 dbSNP
rs1243985892 474 dbSNP
rs1462824832 476 dbSNP
rs1181873348 478 dbSNP
rs939339130 481 dbSNP
rs981537123 491 dbSNP
rs971924210 493 dbSNP
rs867305597 509 dbSNP
rs1171083768 510 dbSNP
rs544806961 511 dbSNP
rs1460279058 518 dbSNP
rs1020448087 520 dbSNP
rs980862411 521 dbSNP
rs1010823335 525 dbSNP
rs1406436366 529 dbSNP
rs576823488 531 dbSNP
rs1885380 554 dbSNP
rs1022798399 556 dbSNP
rs1033237163 562 dbSNP
rs1000461278 566 dbSNP
rs1382251376 568 dbSNP
rs1227336569 569 dbSNP
rs1298395080 573 dbSNP
rs1325133134 574 dbSNP
rs1218486627 577 dbSNP
rs989950996 581 dbSNP
rs1325970736 590 dbSNP
rs957192195 594 dbSNP
rs899487955 598 dbSNP
rs758439831 599 dbSNP
rs1007968618 600 dbSNP
rs1031566552 604 dbSNP
rs1486242233 609 dbSNP
rs775605810 614 dbSNP
rs1340452241 627 dbSNP
rs1316284068 631 dbSNP
rs1263849326 633 dbSNP
rs999189924 634 dbSNP
rs539847045 640 dbSNP
rs1386823059 644 dbSNP
rs1470811520 648 dbSNP
rs556962751 649 dbSNP
rs1401559029 658 dbSNP
rs996606899 661 dbSNP
rs1290116152 664 dbSNP
rs899626843 673 dbSNP
rs567004132 686 dbSNP
rs1387406561 687 dbSNP
rs1038092477 689 dbSNP
rs1284439275 694 dbSNP
rs772290011 699 dbSNP
rs1347801829 708 dbSNP
rs1222002903 710 dbSNP
rs890874376 717 dbSNP
rs941508768 719 dbSNP
rs1046861497 727 dbSNP
rs1259015751 728 dbSNP
rs752866100 743 dbSNP
rs189257225 745 dbSNP
rs1481304053 746 dbSNP
rs765213657 749 dbSNP
rs1340607681 750 dbSNP
rs554429505 759 dbSNP
rs937270310 766 dbSNP
rs536111906 768 dbSNP
rs927310016 771 dbSNP
rs1447263477 772 dbSNP
rs1418504673 779 dbSNP
rs555069557 785 dbSNP
rs533717181 787 dbSNP
rs777121119 792 dbSNP
rs1984008 793 dbSNP
rs760976385 801 dbSNP
rs1354990817 804 dbSNP
rs988908381 806 dbSNP
rs1293289566 824 dbSNP
rs957552914 828 dbSNP
rs1225650938 833 dbSNP
rs1248729873 840 dbSNP
rs369951588 841 dbSNP
rs779046059 848 dbSNP
rs1363622054 852 dbSNP
rs1033163592 853 dbSNP
rs989580085 865 dbSNP
rs551345542 868 dbSNP
rs1219182829 869 dbSNP
rs965365545 874 dbSNP
rs1328451011 879 dbSNP
rs538827120 889 dbSNP
rs1480811552 895 dbSNP
rs771793246 897 dbSNP
rs1017901945 906 dbSNP
rs1378034239 911 dbSNP
rs570853774 913 dbSNP
rs761349583 918 dbSNP
rs1387695631 921 dbSNP
rs1029321793 928 dbSNP
rs1404850133 930 dbSNP
rs1444753690 935 dbSNP
rs145584801 937 dbSNP
rs534168060 949 dbSNP
rs1165534051 951 dbSNP
rs533258076 958 dbSNP
rs1984007 963 dbSNP
rs993943826 978 dbSNP
rs1016610078 979 dbSNP
rs1307870054 982 dbSNP
rs1206269839 984 dbSNP
rs1236050458 987 dbSNP
rs1457030680 991 dbSNP
rs1005288110 992 dbSNP
rs749240804 993 dbSNP
rs898321375 999 dbSNP
rs780083144 1000 dbSNP
rs769734897 1001 dbSNP
rs1475590010 1015 dbSNP
rs371656903 1017 dbSNP
rs1047719295 1019 dbSNP
rs1470414868 1020 dbSNP
rs1038245702 1026 dbSNP
rs1338832640 1031 dbSNP
rs184622718 1041 dbSNP
rs905777010 1042 dbSNP
rs906746791 1044 dbSNP
rs1283528704 1046 dbSNP
rs1490047343 1049 dbSNP
rs1216168396 1051 dbSNP
rs1255892569 1059 dbSNP
rs530384572 1064 dbSNP
rs1316962799 1065 dbSNP
rs1203938437 1070 dbSNP
rs1291939816 1071 dbSNP
rs1440209687 1072 dbSNP
rs1186144660 1074 dbSNP
rs1243269413 1076 dbSNP
rs1045324894 1078 dbSNP
rs778355579 1082 dbSNP
rs1192018579 1086 dbSNP
rs371925495 1090 dbSNP
rs1224059448 1091 dbSNP
rs1480947743 1091 dbSNP
rs780819275 1100 dbSNP
rs563206369 1114 dbSNP
rs1414041767 1119 dbSNP
rs550850864 1129 dbSNP
rs796855436 1133 dbSNP
rs1401744762 1138 dbSNP
rs1341829947 1144 dbSNP
rs1339629873 1145 dbSNP
rs531768187 1148 dbSNP
rs1223825250 1150 dbSNP
rs1276261759 1155 dbSNP
rs1342418073 1174 dbSNP
rs1199450588 1177 dbSNP
rs1284307647 1179 dbSNP
rs1053856920 1190 dbSNP
rs988837059 1198 dbSNP
rs936115641 1199 dbSNP
rs10116870 1200 dbSNP
rs974920583 1205 dbSNP
rs1305076084 1215 dbSNP
rs1408057936 1216 dbSNP
rs1202027704 1227 dbSNP
rs564822045 1231 dbSNP
rs139643998 1235 dbSNP
rs1019628783 1239 dbSNP
rs1169604118 1255 dbSNP
rs986459779 1268 dbSNP
rs955196493 1269 dbSNP
rs1421312653 1274 dbSNP
rs1325272222 1282 dbSNP
rs192633370 1283 dbSNP
rs560511422 1284 dbSNP
rs1170577040 1286 dbSNP
rs1329032701 1289 dbSNP
rs1025345233 1290 dbSNP
rs779119555 1292 dbSNP
rs1279717386 1297 dbSNP
rs993912424 1302 dbSNP
rs543124335 1308 dbSNP
rs527843221 1310 dbSNP
rs1490655886 1314 dbSNP
rs1016738968 1317 dbSNP
rs1201015192 1331 dbSNP
rs1481765001 1332 dbSNP
rs1232817184 1333 dbSNP
rs1437918338 1333 dbSNP
rs963668789 1335 dbSNP
rs1205771768 1336 dbSNP
rs1379685889 1339 dbSNP
rs1016579087 1340 dbSNP
rs199768818 1341 dbSNP
rs554401573 1341 dbSNP
rs571000252 1341 dbSNP
rs754361996 1347 dbSNP
rs1004083141 1348 dbSNP
rs1329149277 1350 dbSNP
rs906723455 1352 dbSNP
rs1444028420 1355 dbSNP
rs1045693887 1357 dbSNP
rs1360855448 1361 dbSNP
rs766828298 1378 dbSNP
rs1218976486 1379 dbSNP
rs1324599327 1381 dbSNP
rs905749030 1381 dbSNP
rs1285377265 1383 dbSNP
rs1226683850 1384 dbSNP
rs1264163599 1385 dbSNP
rs893792098 1386 dbSNP
rs1196690852 1387 dbSNP
rs1046076179 1389 dbSNP
rs950019385 1401 dbSNP
rs552947259 1404 dbSNP
rs113066207 1405 dbSNP
rs1356200480 1406 dbSNP
rs1243796316 1408 dbSNP
rs936084284 1410 dbSNP
rs761136164 1414 dbSNP
rs926048125 1415 dbSNP
rs1189569213 1416 dbSNP
rs935394738 1418 dbSNP
rs1457273450 1431 dbSNP
rs1168281659 1433 dbSNP
rs923986023 1434 dbSNP
rs1463716451 1447 dbSNP
rs1330213113 1456 dbSNP
rs1051859957 1459 dbSNP
rs1429580180 1462 dbSNP
rs974853635 1469 dbSNP
rs750844241 1473 dbSNP
rs912087606 1474 dbSNP
rs188893010 1475 dbSNP
rs544865712 1479 dbSNP
rs951033356 1484 dbSNP
rs1481930674 1494 dbSNP
rs1316344467 1497 dbSNP
rs1198272376 1501 dbSNP
rs577801764 1504 dbSNP
rs1263941976 1510 dbSNP
rs1484277398 1513 dbSNP
rs975283460 1514 dbSNP
rs1025313952 1522 dbSNP
rs1423146064 1528 dbSNP
rs143228800 1530 dbSNP
rs962419082 1539 dbSNP
rs1169524310 1542 dbSNP
rs1406282083 1550 dbSNP
rs1467186063 1552 dbSNP
rs1462016512 1554 dbSNP
rs1402168298 1556 dbSNP
rs1383244941 1563 dbSNP
rs558759957 1564 dbSNP
rs1016704438 1575 dbSNP
rs1280593077 1581 dbSNP
rs1265234221 1595 dbSNP
rs1206995467 1597 dbSNP
rs1218329533 1603 dbSNP
rs1001349211 1606 dbSNP
rs951084775 1609 dbSNP
rs1208165233 1614 dbSNP
rs905671324 1615 dbSNP
rs1307876658 1616 dbSNP
rs865806550 1620 dbSNP
rs3739531 1621 dbSNP
rs1487193895 1626 dbSNP
rs566987356 1627 dbSNP
rs1434510976 1628 dbSNP
rs891752867 1633 dbSNP
rs796666491 1636 dbSNP
rs1453801299 1637 dbSNP
rs1000167056 1645 dbSNP
rs1012503670 1646 dbSNP
rs1451656743 1654 dbSNP
rs894097473 1656 dbSNP
rs1406473186 1661 dbSNP
rs1338444714 1663 dbSNP
rs1370071241 1664 dbSNP
rs1217715927 1680 dbSNP
rs554961540 1682 dbSNP
rs999895001 1685 dbSNP
rs147224411 1691 dbSNP
rs1242335175 1695 dbSNP
rs902530959 1697 dbSNP
rs3739532 1699 dbSNP
rs1159261158 1700 dbSNP
rs184494172 1701 dbSNP
rs1420305005 1711 dbSNP
rs1489311280 1712 dbSNP
rs577910084 1715 dbSNP
rs1189126010 1721 dbSNP
rs1052269334 1723 dbSNP
rs762505244 1726 dbSNP
rs571841483 1733 dbSNP
rs912041947 1735 dbSNP
rs1051980208 1739 dbSNP
rs929510326 1744 dbSNP
rs1166048559 1749 dbSNP
rs1352018170 1753 dbSNP
rs1445631558 1754 dbSNP
rs1245415682 1765 dbSNP
rs919519423 1768 dbSNP
rs1374311871 1772 dbSNP
rs144990824 1776 dbSNP
rs942543141 1788 dbSNP
rs909761802 1790 dbSNP
rs528132839 1797 dbSNP
rs1239363353 1815 dbSNP
rs1485685880 1817 dbSNP
rs1261504528 1829 dbSNP
rs1323287666 1830 dbSNP
rs1218062716 1831 dbSNP
rs1219033937 1833 dbSNP
rs1264548370 1839 dbSNP
rs1319959319 1843 dbSNP
rs1457913609 1843 dbSNP
rs1180027627 1851 dbSNP
rs560650604 1853 dbSNP
rs962386641 1855 dbSNP
rs1182956936 1860 dbSNP
rs1416517541 1867 dbSNP
rs909570944 1870 dbSNP
rs1245231240 1872 dbSNP
rs984018641 1875 dbSNP
rs929600238 1876 dbSNP
rs1467357310 1880 dbSNP
rs980244046 1880 dbSNP
rs1376292011 1887 dbSNP
rs775600105 1888 dbSNP
rs1453378473 1889 dbSNP
rs1284720993 1891 dbSNP
rs982252765 1892 dbSNP
rs375178135 1893 dbSNP
rs1226459703 1901 dbSNP
rs542210357 1919 dbSNP
rs970544401 1927 dbSNP
rs1024555333 1932 dbSNP
rs1200178536 1933 dbSNP
rs1255693154 1934 dbSNP
rs1380290859 1940 dbSNP
rs1023802421 1952 dbSNP
rs1239788676 1953 dbSNP
rs1472078683 1954 dbSNP
rs1360864849 1959 dbSNP
rs990953623 1962 dbSNP
rs1478983389 1964 dbSNP
rs1289046554 1970 dbSNP
rs1454900258 1972 dbSNP
rs192912657 1982 dbSNP
rs139465394 1983 dbSNP
rs1032572152 1985 dbSNP
rs147366109 1987 dbSNP
rs1031568800 1992 dbSNP
rs1425923293 1993 dbSNP
rs1360877800 1994 dbSNP
rs1000093339 1996 dbSNP
rs904520155 2008 dbSNP
rs1039070059 2009 dbSNP
rs1008056295 2029 dbSNP
rs1275977644 2035 dbSNP
rs1428236711 2036 dbSNP
rs1219347881 2038 dbSNP
rs377239679 2041 dbSNP
rs545313959 2050 dbSNP
rs1262730168 2058 dbSNP
rs890550062 2060 dbSNP
rs1440148070 2065 dbSNP
rs998000488 2072 dbSNP
rs1264441487 2076 dbSNP
rs900559655 2078 dbSNP
rs188109044 2094 dbSNP
rs1052332307 2096 dbSNP
rs1490719535 2101 dbSNP
rs1039096663 2102 dbSNP
rs1423259776 2102 dbSNP
rs929471497 2111 dbSNP
rs919483695 2121 dbSNP
rs1223282183 2125 dbSNP
rs116784072 2133 dbSNP
rs888291012 2134 dbSNP
rs1293794227 2144 dbSNP
rs1401684865 2145 dbSNP
rs1296084908 2154 dbSNP
rs541239218 2159 dbSNP
rs1436776526 2160 dbSNP
rs909540140 2161 dbSNP
rs918246794 2164 dbSNP
rs1295863216 2176 dbSNP
rs1383618794 2181 dbSNP
rs10967891 2184 dbSNP
rs1302031984 2185 dbSNP
rs866440182 2185 dbSNP
rs1201292994 2186 dbSNP
rs1405001912 2189 dbSNP
rs1245147075 2196 dbSNP
rs1156712450 2198 dbSNP
rs1421420866 2198 dbSNP
rs377008877 2198 dbSNP
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rs765124517 2198 dbSNP
rs1368022835 2199 dbSNP
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rs916295043 2218 dbSNP
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rs978250220 2595 dbSNP
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rs573321310 2644 dbSNP
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rs1199981522 2793 dbSNP
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rs1231716986 2801 dbSNP
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rs763801962 2990 dbSNP
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rs200530768 3074 dbSNP
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rs775190435 3135 dbSNP
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rs919280944 3211 dbSNP
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rs577649096 3680 dbSNP
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rs901596926 3861 dbSNP
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rs186398649 3990 dbSNP
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rs1387298767 4000 dbSNP
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rs913764930 4025 dbSNP
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rs1014504454 4092 dbSNP
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rs1174006545 4739 dbSNP
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rs1333027227 4753 dbSNP
rs991035647 4756 dbSNP
rs959217027 4762 dbSNP
rs1436642367 4763 dbSNP
rs1034844395 4772 dbSNP
rs1365077449 4774 dbSNP
rs765209310 4775 dbSNP
rs981986301 4776 dbSNP
rs1442504348 4781 dbSNP
rs966637868 4783 dbSNP
rs1442224458 4789 dbSNP
rs1020878654 4797 dbSNP
rs1343236652 4804 dbSNP
rs1218880801 4805 dbSNP
rs181858110 4808 dbSNP
rs139450117 4810 dbSNP
rs1206870916 4815 dbSNP
rs1246170130 4818 dbSNP
rs893860297 4821 dbSNP
rs1464405604 4832 dbSNP
rs1028391022 4835 dbSNP
rs758916612 4842 dbSNP
rs1248255606 4846 dbSNP
rs1187888547 4849 dbSNP
rs1476910593 4850 dbSNP
rs879015061 4851 dbSNP
rs10967890 4854 dbSNP
rs1408221522 4859 dbSNP
rs901336567 4862 dbSNP
rs1156340832 4869 dbSNP
rs1387220563 4870 dbSNP
rs1462434803 4877 dbSNP
rs1326048590 4879 dbSNP
rs1377545196 4881 dbSNP
rs1010199395 4888 dbSNP
rs1436205272 4890 dbSNP
rs1280401680 4891 dbSNP
rs533211836 4899 dbSNP
rs568737634 4900 dbSNP
rs1224604092 4905 dbSNP
rs1267621071 4913 dbSNP
rs1335485481 4920 dbSNP
rs1019642498 4924 dbSNP
rs1291929598 4926 dbSNP
rs1449692313 4927 dbSNP
rs940214100 4928 dbSNP
rs559424812 4932 dbSNP
rs1233191437 4937 dbSNP
rs887362330 4938 dbSNP
rs1473384616 4940 dbSNP
rs12348286 4944 dbSNP
rs1047818447 4952 dbSNP
rs867179550 4957 dbSNP
rs1050253206 4960 dbSNP
rs374531950 4960 dbSNP
rs1165580746 4964 dbSNP
rs930342883 4969 dbSNP
rs541024189 4975 dbSNP
rs899041587 4976 dbSNP
rs766264196 4980 dbSNP
rs1372757519 4984 dbSNP
rs1408248030 5000 dbSNP
rs529289408 5001 dbSNP
rs1038038932 5006 dbSNP
rs920277466 5019 dbSNP
rs1247042548 5020 dbSNP
rs1359093014 5022 dbSNP
rs10967889 5027 dbSNP
rs1056886955 5029 dbSNP
rs937792768 5030 dbSNP
rs1317782517 5031 dbSNP
rs927438176 5047 dbSNP
rs1483882949 5049 dbSNP
rs1202661588 5052 dbSNP
rs1250613958 5057 dbSNP
rs927798168 5058 dbSNP
rs1400637047 5065 dbSNP
rs1475273097 5072 dbSNP
rs980233479 5079 dbSNP
rs969295611 5080 dbSNP
rs867702734 5100 dbSNP
rs981919000 5107 dbSNP
rs914800418 5108 dbSNP
rs989496004 5110 dbSNP
rs966571238 5111 dbSNP
rs1428216479 5112 dbSNP
rs147782374 5116 dbSNP
rs1376266360 5118 dbSNP
rs1397953072 5122 dbSNP
rs1412885373 5129 dbSNP
rs7049080 5133 dbSNP
rs1008255987 5142 dbSNP
rs1370939110 5145 dbSNP
rs1192343164 5152 dbSNP
rs1298232074 5153 dbSNP
rs1477826579 5157 dbSNP
rs1344138547 5165 dbSNP
rs958053004 5166 dbSNP
rs1028365854 5167 dbSNP
rs1028777934 5168 dbSNP
rs996941048 5175 dbSNP
rs749516065 5185 dbSNP
rs1201779257 5189 dbSNP
rs1220973522 5190 dbSNP
rs1441323607 5200 dbSNP
rs1194602986 5203 dbSNP
rs1250410692 5216 dbSNP
rs1448095536 5224 dbSNP
rs775630906 5225 dbSNP
rs558038324 5228 dbSNP
rs1004395928 5235 dbSNP
rs546431723 5236 dbSNP
rs1490327198 5240 dbSNP
rs1467775840 5247 dbSNP
rs1170974836 5248 dbSNP
rs1291084327 5251 dbSNP
rs1382846888 5253 dbSNP
rs899008692 5255 dbSNP
rs1367244977 5257 dbSNP
rs553580365 5262 dbSNP
rs1037612890 5268 dbSNP
rs1296639088 5273 dbSNP
rs1005233856 5274 dbSNP
rs561726593 5278 dbSNP
rs1234978908 5283 dbSNP
rs1253878333 5284 dbSNP
rs887331442 5291 dbSNP
rs1048620448 5294 dbSNP
rs938336366 5296 dbSNP
rs905573423 5309 dbSNP
rs931584382 5327 dbSNP
rs1211977026 5330 dbSNP
rs898822618 5339 dbSNP
rs113158798 5343 dbSNP
rs373210671 5351 dbSNP
rs989074209 5356 dbSNP
rs934941395 5373 dbSNP
rs912821002 5374 dbSNP
rs553946570 5376 dbSNP
rs986721327 5378 dbSNP
rs535424842 5379 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' acaucacguugauaCGUUUUGa 5'
                        ||||||| 
Target 5' -----------uugGCAAAACa 3'
 		1 - 11
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000262244.5 | 3UTR | UUGGCAAAACAUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000262244.5 | 3UTR | UUGGCAAAACAUUAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.557 2.3e-3 -0.498 6.6e-3 24 Click to see details
GSE28260 Renal cortex and medulla -0.666 6.5e-3 -0.725 2.5e-3 13 Click to see details
GSE42095 Differentiated embryonic stem cells 0.366 4.3e-2 0.395 3.1e-2 23 Click to see details
GSE32688 Pancreatic cancer 0.214 1.2e-1 0.161 1.9e-1 32 Click to see details
GSE38226 Liver fibrosis 0.192 2.0e-1 0.323 7.7e-2 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.15 2.4e-1 -0.193 1.8e-1 25 Click to see details
GSE26953 Aortic valvular endothelial cells -0.131 2.7e-1 0.060 3.9e-1 24 Click to see details
GSE19350 CNS germ cell tumors -0.15 3.2e-1 0.406 9.5e-2 12 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.317 3.4e-1 0.000 5.0e-1 4 Click to see details
GSE21687 Ependynoma primary tumors 0.045 3.6e-1 -0.024 4.3e-1 64 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.067 3.8e-1 0.533 3.0e-3 25 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.015 4.7e-1 -0.304 9.6e-2 20 Click to see details
GSE17498 Multiple myeloma -0.004 4.9e-1 0.012 4.7e-1 40 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LIHC 0.692 0.15 0.400 0.3 4 Click to see details
UCEC -0.036 0.49 -0.500 0.33 3 Click to see details
UCEC -0.036 0.49 -0.500 0.33 3 Click to see details
UCEC -0.036 0.49 -0.500 0.33 3 Click to see details
UCEC -0.036 0.49 -0.500 0.33 3 Click to see details
UCEC -0.036 0.49 -0.500 0.33 3 Click to see details
92 hsa-miR-19a-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT038980 WDR96 cilia and flagella associated protein 43 1 1
MIRT063864 RASSF8 Ras association domain family member 8 2 6
MIRT077656 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 2 2
MIRT078461 MAP3K3 mitogen-activated protein kinase kinase kinase 3 2 2
MIRT095248 FAM13B family with sequence similarity 13 member B 2 2
MIRT109490 KLHL15 kelch like family member 15 2 6
MIRT155378 CCNT2 cyclin T2 2 2
MIRT163208 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 2 2
MIRT188326 ARID1A AT-rich interaction domain 1A 2 2
MIRT204723 BZW1 basic leucine zipper and W2 domains 1 2 4
MIRT236399 HMGXB4 HMG-box containing 4 2 2
MIRT237114 P2RY1 purinergic receptor P2Y1 2 5
MIRT286942 SOCS7 suppressor of cytokine signaling 7 2 2
MIRT442523 MOB3B MOB kinase activator 3B 2 2
MIRT473428 MDM4 MDM4, p53 regulator 2 2
MIRT476783 FOS Fos proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT476942 FAM83G family with sequence similarity 83 member G 2 2
MIRT480184 CALM2 calmodulin 2 2 6
MIRT489620 ZNF384 zinc finger protein 384 2 2
MIRT492246 SLC39A9 solute carrier family 39 member 9 2 2
MIRT492422 RGL2 ral guanine nucleotide dissociation stimulator like 2 2 2
MIRT494860 ZNF99 zinc finger protein 99 2 2
MIRT497001 SNAP25 synaptosome associated protein 25 2 2
MIRT501973 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT504917 CD38 CD38 molecule 2 4
MIRT507019 HMGA2 high mobility group AT-hook 2 2 6
MIRT510820 SBNO1 strawberry notch homolog 1 2 4
MIRT514166 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT514328 PSMG2 proteasome assembly chaperone 2 2 4
MIRT514429 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514537 ESR2 estrogen receptor 2 2 2
MIRT516117 SRPX2 sushi repeat containing protein, X-linked 2 2 4
MIRT517759 ZNF366 zinc finger protein 366 2 4
MIRT518495 FAM161B family with sequence similarity 161 member B 2 4
MIRT518512 CASP10 caspase 10 2 2
MIRT518561 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT518641 NOM1 nucleolar protein with MIF4G domain 1 2 2
MIRT518729 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT523565 GGCX gamma-glutamyl carboxylase 2 4
MIRT526523 YIPF6 Yip1 domain family member 6 2 2
MIRT530254 ZNF620 zinc finger protein 620 2 2
MIRT531658 ZFP14 ZFP14 zinc finger protein 2 2
MIRT532699 TCN2 transcobalamin 2 2 4
MIRT534019 STXBP4 syntaxin binding protein 4 2 2
MIRT535748 MYO10 myosin X 2 4
MIRT544509 GTF2E2 general transcription factor IIE subunit 2 2 2
MIRT546758 RLIM ring finger protein, LIM domain interacting 2 2
MIRT547929 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT550130 ZNF138 zinc finger protein 138 2 2
MIRT551763 MED21 mediator complex subunit 21 2 2
MIRT557727 FYCO1 FYVE and coiled-coil domain containing 1 2 2
MIRT558924 CBX1 chromobox 1 2 2
MIRT562466 CORO1C coronin 1C 2 2
MIRT562759 ZNF846 zinc finger protein 846 2 2
MIRT563061 ZNF28 zinc finger protein 28 2 2
MIRT563336 RPLP0 ribosomal protein lateral stalk subunit P0 2 2
MIRT569170 DMD dystrophin 2 2
MIRT573256 TNFAIP6 TNF alpha induced protein 6 2 2
MIRT575057 P2ry1 purinergic receptor P2Y, G-protein coupled 1 2 4
MIRT575360 Zxda zinc finger, X-linked, duplicated A 2 2
MIRT613233 CCDC39 coiled-coil domain containing 39 2 2
MIRT613347 ADRBK2 G protein-coupled receptor kinase 3 2 6
MIRT613952 TMEM59 transmembrane protein 59 2 2
MIRT615488 EDN1 endothelin 1 2 2
MIRT618710 ESD esterase D 2 2
MIRT630609 ARHGAP1 Rho GTPase activating protein 1 2 2
MIRT630619 CXCR6 C-X-C motif chemokine receptor 6 2 2
MIRT630631 IMPAD1 inositol monophosphatase domain containing 1 2 2
MIRT630674 KLF7 Kruppel like factor 7 2 2
MIRT630746 COG6 component of oligomeric golgi complex 6 2 2
MIRT636853 ZSCAN2 zinc finger and SCAN domain containing 2 2 2
MIRT638642 GPATCH8 G-patch domain containing 8 2 2
MIRT639106 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 2 2
MIRT639422 PKP1 plakophilin 1 2 2
MIRT640187 ABCC12 ATP binding cassette subfamily C member 12 2 2
MIRT641757 SF3A1 splicing factor 3a subunit 1 2 2
MIRT666577 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT672166 FANCF Fanconi anemia complementation group F 2 2
MIRT688345 ETS1 ETS proto-oncogene 1, transcription factor 2 2
MIRT690120 ZFAND1 zinc finger AN1-type containing 1 2 2
MIRT696939 CERK ceramide kinase 2 2
MIRT701361 NR4A3 nuclear receptor subfamily 4 group A member 3 2 2
MIRT703288 GID4 GID complex subunit 4 homolog 2 2
MIRT709146 ZNF799 zinc finger protein 799 2 2
MIRT710848 FAM210A family with sequence similarity 210 member A 2 2
MIRT712621 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT714591 CMBL carboxymethylenebutenolidase homolog 2 2
MIRT716909 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT721165 FAM200B family with sequence similarity 200 member B 2 2
MIRT722404 BCAS2 BCAS2, pre-mRNA processing factor 2 2
MIRT722517 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT724599 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-19a Hydroxamic acid HDACi LAQ824 NULL NULL Microarray breast cancer cell line SKBr3 16452179 2006 down-regulated
miR-19a 5-Fluorouracil approved 3385 Quantitative real-time PCR colon cancer cells 17702597 2007 up-regulated
miR-19a Curcumin NULL 969516 Microarray BxPC-3 human pancreatic carcinoma cell line 18347134 2008 down-regulated
miR-19a 5-aza-2'-deoxycytidine (5-Aza-CdR) approved 451668 Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-19a 5-aza-2'-deoxycytidine (5-Aza-CdR) + trichostatin A(TSA) NULL NULL Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-19a Trichostatin A (TSA) NULL 444732 Microarray Pancreatic Cancer MiaPACA-2 cells 19407485 2009 up-regulated
miR-19a Histone deacetylase inhibitor ITF2357 NULL 9804992 Quantitative real-time PCR multiple myeloma 19713220 2009 down-regulated
miR-19a Activin A NULL 229455 Quantitative real-time PCR Human embryonic stem (hES) cells 19885849 2010 up-regulated
miR-19a Arsenic trioxide approved 14888 Quantitative real-time PCR bladder cancer cell line T24 20857258 2011 down-regulated
miR-19a Ibandronate approved 60852 Quantitative real-time PCR Periodontal ligament stem cells (PDLSCs) 21108928 2011 down-regulated
miR-19a Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-19a 5-azacytidine (5-AzaC) approved 9444 Quantitative real-time PCR chronic myeloid leukemia (CML)K562 cell line 21176349 2011 down-regulated
miR-19a Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-19a 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-19a Vitamin D3 approved 5280795 Quantitative real-time PCR Plasma 22594500 2012 down-regulated
miR-19a (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miR-19a Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 down-regulated
miR-19a Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-19a Dexamethasone approved 5743 Quantitative real-time PCR adrenals and granulosa cells 24205079 2014 down-regulated
miR-19a Arsenic trioxide approved 14888 Microarray bladder cancer cell line T24 20857258 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-19a Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-19a-5p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-19a-5p Fluorouracil 3385 NSC19893 approved resistant Low Colorectal Cancer cell line (HCT-8)
hsa-miR-19a-5p Oxaliplatin 6857599 NSC266046 approved sensitive Low Colorectal Cancer cell line (SW480)
hsa-miR-19a-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-19a-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-19a-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-19a-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-19a-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-19a-5p Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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