miRTarBase - #MIRT442610


—
pre-miRNA Information
pre-miRNA hsa-mir-660   
Genomic Coordinates chrX: 50013241 - 50013337
Synonyms MIRN660, hsa-mir-660, MIR660
Description Homo sapiens miR-660 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-660-5p
Sequence 16| UACCCAUUGCAUAUCGGAGUUG |37
Evidence Experimental
Experiments Microarray
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 13 X + 50013268 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs781983430 4 dbSNP
rs782127597 6 dbSNP
rs782718206 15 dbSNP
rs781967068 16 dbSNP
rs782056730 20 dbSNP
rs1247999576 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CRIPT   
Synonyms HSPC139, SSMDF
Description CXXC repeat containing interactor of PDZ3 domain
Transcript NM_014171   
Expression
Putative miRNA Targets on CRIPT
3'UTR of CRIPT
(miRNA target sites are highlighted)		 
>CRIPT|NM_014171|3'UTR
   1 ATGTATTGATGGAATTTCTGGCTTTCTAAATGATTTTACTTTCTGCCTTGAATTTTCAAGGCATAGATGTCAACTTACAG
  81 AATAACATGTTTTAAGATAATTAAGTTTAAACCAGAGAATTTGATTGTTACTCATTTTGCTCTCATGTTCTAAACAGCAA
 161 CAGTGTAACTAGTCTTTTGTTGTAAATGGTTATTTTCCTTATAAGAATTTTAAGAACTAAGTGGCAAATTCCATGAAAAT
 241 ATTTCTCAGTTCTGTATGCACTTTTATTTAACATTATTCATATAATTCTCCCCCCACCACTTTATTTATAGATACTGCAA
 321 AAGTGAGAAGGAGATAATAGATACTTTGCTCTGAATTTGGCATCCAGAGTTAACATTTCTCCCCTCACTCCCTTGCTGGT
 401 GTCATAGTTATTAGAATCAGCAGCCTCTTAACTAATTGCGGTTTCATAGGATATATAAATGTTTCAAGCCATTATTGCTG
 481 AATGGTTCTTTAGTTATTAACCTAGACCCAAATCAAAGACCAGTTGGATTTATGATATTTTTTATTTGTTCTTGCAGCCA
 561 AAGTGCCAGTTTCTTTAATATGTGACCAAGAACACAAGGAGCATCCATATGGCCAAATAAATACACTGAATTTTAGAAAA
 641 ACATATTACTTTGAATTCAAATTGTCATGAAAACCAGAACAGTGTTTGTCCATGTTGCATGTAATGAAAATAAATCCCTG
 721 CTCTGAGAAAAGCTCTTTGAAGCAAAAACCAAACTTTTTTTTTTTTTTTTTTACCTCCTGTCTTGCCCCCTAAAAGAAAT
 801 AAATAGAGCAAACATCTTGACTCTCCCTTTTTAAAATTTGTTTGTTTTTTTTTTTTTTTTTTGGATACAAGAGCTCACTC
 881 TGTTGCCCAGGGTGGAGTGCAGAGGTATCATCAGGCTCTCTGCAGCCTCCATCTGCTGGGCTCAAGCAATTCTTCCCCCT
 961 CAGCCTCCTAAGTAGCTGGGGACTACAGGCGTGTGCCACTGTGCTCAGCTAGTTTTTATTTTTAGTAGAGATGAGGACTC
1041 ACTATGTTGCCCAAGCTGTTCTCGAACTTCTGATCTCAAGCAATCCTCTGGCCTCAGCCTTCCGAAGTGCTGGGATACAG
1121 GTGTGAGCCACAGAACTTGGCCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACTACAGGTTTCAAATGAATA
1201 CTTTTCTTATGTTGCCTTCAGAGGTTCAGGACTTCTGCTTTTAAAACCTGCAGCCTACCGTGGGAAACCAAAAAAGCATT
1281 CCCTATTTCCAACTGCAGTATGTATAAATACATATCACTACAAAATGTATAGAAAGTGTGATGAGATACATGAATGGCAT
1361 TTTTATTGGTCATAACATTTTGATGAAAAGCATTTAAAGTTTTAACTTTATAAGGCTTTTCAAAATGTGTTTTTCTGAGA
1441 TACATTGTTATTTATTCATATCCAGAAAAATTACAAGGATAATACAGAATATAATAAATAATTTATCTGAGAGCAGGAAG
1521 TATCCTCTCATGCTTAATCAGTTTGGGGTTTTTAATTATAACACAGGAAACTCATAACAGGACCTGGTCAGAGAGCATCC
1601 CAGATCCATTAAAGATTGGATTCATTGACTTGGAGAAAAGTACATTTCTCAGGGATCAGCTAGAATCTGGACTTGCCTAA
1681 CTCACATTTCATTTTTTTTGTTGTTGTTGTTGTTTTTATAATTTCAACTTTTATTTTAGATGTAGGGGTACATGTGCAGG
1761 TGAGTTATATGGGTATATTTTGTGATGCTGAGGTTTGGGGTACAAATGATCCTGTCACCCAGGTAGTGAGCATAGAGTCC
1841 AACAGGTGGTTTTTCACCCCTTCCCTCCCCTCTTCCCTCCAGTAGTCCCCTATGTCTGTTCTCATTTTTATGTCCATGTG
1921 TACCCATTGCTTAGTTCCCACTGATAAGTGAGAACATGCGGTCTTTGGTTTTCTGTTCCTGTGTATATTCACTATAATGA
2001 CCTCCAGCTGCATCCATGTTGCTGCAAAAGACATGATTTTCATTCTTTTTTATGGCTGCATAGTATTCTGTGGTGTATAT
2081 GTACCAATTTTCTTTATCCAGTCCACTATTAATGAGCATCTAGGTTGATTCTGTGTCTTTGCTGTTGTGAATAGTGCTGT
2161 GATGAATATGTGAGTGTATGTGTCTTTTTGGTAGAACAATTTATTTTCATTTGGATTTATATCCAGTCATGGGATTGCTG
2241 GTTCAAATGGTAGTTCTGTTTTAACTTCTTTGAGAAATCTCCAAACTGCTTTCACAGTGGCTGAACTAATTTGCATTTCC
2321 ATCAGTGTAGGCGCATTCTACACTGCACTGGCTTCTACAGTGTTGAAGCATTCCGTTTTTCCCACAGCCTCACCAGCATC
2401 TGTTATTTTTTTGACTTTTTGATAATAGCCATTCTGACTGGTGTGAGATTGTAACTCATTGTGGTTTTGATTTGCATTTA
2481 TCTGATTAGTAATGTTGAGCATTTTTTCATGTTTGTTAACCGCTTGTATGTTGTCTTTTGAGAAGTGTCTGTTCAAGTCT
2561 TTTGGCATTTTTTTAATGGGTTTTTGTTTGTGTGTGTGTATTTTTGTTTTTGTTTTTGTTTTGAGATGGAGTTTCACTGT
2641 TGTCACCCAGGCTAGAGTGCAATGGCACCATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCC
2721 CCAGCCTCCTGAGTTGCTGGGATTACAGGTGCCTGCCACCAAGCGTGGCTAATTTTGGTACTTTTAGTAGAGACAGGGTT
2801 TCACCATGTTGGCCAGCCTGGTCTCGAATTCCTGACCTCAGGTGATCCACCCATCTCAGCCTCCCAAAGTGCTGGGATTA
2881 CAGGAGTGAGCCACCACACCTGGCCACGAGTTACTTGGTTTTCGTTTTCTGAATTGTTTTAGTTCCTTATAGATTTTGGA
2961 CATTAGACCTTTTTCAGATGCACAGTTTGTGAATATTCTCTCCCATTCTGTAGGTTGTCTGTTTACTGTATTGATAGTTC
3041 CTTTTGCGGTGCAGAAGCTCTTTAGTTTGATTAGGTTCCACTTGTCAATTTTTGTTTTTGTTGCAATTGCTTTTGAGGAC
3121 TTAGCCGTAAGTTCTTTCCCATAGCTGATGTCCAGATGTTATTTCGTAGGTTTTCTTCTAGGACTCTTATAGCTTGAAGT
3201 CTTACATTTAAATCTTTTTTTTTTTTTTTCCCCAAAGACAGAGTCTCCTTCTGTTGCCCAGGCTGGAGTACAGTGGTACA
3281 ATCTTGGCTCACCACAACCTCCACCTCCCAGGCTCAAGCGATTCTCATGCCTCAGCCTCCCAACCTAACTGGGATTACAG
3361 GCACATGCCACCACGCCTGGCTAATTTTTCTATTTTTAGTAGGAATGGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAA
3441 TTCCGAGCCTCAAGTGATCCACCCACCTCAGTCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCCCT
3521 TATATTTAAATCTTTAATCTATCTTGAGGTAATTTTATATATATGGTGAAAGGGGTCCAGTTTGAGTCTTCTGCATATGG
3601 CTAGACAGCTGTTCCAGCACCATTTATTGAATTAGGGAATCCTTTCTCTGTTGCTTATTTTTGTTAACTTTGTCAAAGGT
3681 CAGATGGCTGTAGGTGTGTAGCTTTATTTCTGTCTGTTCCATTCCATTGGTCTATGGGTCTGTTTTTATATCTGTACCAT
3761 GCTGTTTTGGTTACTGTAGCTTCCTTATAGTATAGTTTAACTCAGGTAATGTGATACCTCAGCTTTGTTTTATTTGCTTA
3841 GGATTGATTTTTTGGTTCCATATGAATTTTAGAATGGATTTTTTCTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTGTGT
3921 CTCCCAGGCTCTGAGTGCAGCTGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAATTCTCCTGCCTC
4001 AGCCTCCCAAATAGCTGGGATTACAGGAGCCCGCCAACCATGCCCAGCTAATTTATGTAATTTTAGTAGAGATGGGGTTT
4081 CATCATCTTAGCCAGGCTGGTCTTGAACTCCTGACGTTGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAG
4161 GCGTGAGCCACTGGACCCGGCAGGATTTTTCTAATTCTGTGAAAAATGATGTTTGTAGTTTGATAGGAATAGCATTGAAT
4241 CTGTGGATTGCTTTGGGCAGTATGGCCATTTTAATGATATTGATTCTTCTAGCTCATGAGCTTGGAATGTTTTTCCATTT
4321 GTTTGTGTCATCTCTGATTTCTTTCAGCGTGTTTTGTAGTTCTTGTCCAGCTCACATTTTATCTTCATACTTTGAGTAGC
4401 CTCCTTCCATGAATGGATCATCCAGTGGCCGCACTTAGGTTCTCCTATGAAGATTTTTGTTGTATTGTACCTCAGAACCA
4481 TCTCCATATTCTCTAAATAATAATAATGATGGTCATAAATTGAATAGAAGTATTTACTAGATGAGGAGGAAAACCCTAAA
4561 ACAAAACATGAACATAAAATATTTTTAAAAGGAAGACATACAAACAGACACTATAACCAAATAAGATGACAGAATTAAGG
4641 CCTTATGCCACAGCCAGAGTTGAAAAATGCAGAAAAAAAGTTTAAAAACAAGGAATTAAAGCCAAACCTAACTTTTATCA
4721 AAATAAATGTAAAAGTGATGAAAGAATCTGTTAAGATATCAGATTGTAATATAAAAGATACTAGAAACAAATGCCAATAG
4801 AACACTTAAGTACATTTTATATATTCATCCATTAGAATATATAGCTGTCAGAATGATAGAAGAATTACATATGTGTGCAA
4881 AAGTTTTTGTATCCATGTGGAAAACACAGGAAGCTAATAGTACTGTTTTTCTCTGGAGTGGGTGTAAGGGTAGAGACTTA
4961 ACTCTTTACATCCTTATGGCAGCCTTCGAATACCTTTTAACTCCCAGTTCCCTTAACTGGGGGTGTGTATCCTAGAATCC
5041 TCGACCCATTAGAAAGTATATTGTAGACATCATACTCTTTACCCTTTAACACTACACATGCACTTCATAAGAACAAGCAT
5121 GCTGTCTTACCCAAGTACAGCTATCAAGTTCAGAAATTTAACATTGCCATAATACTTTACAGTCCATATTTCAATTTCAT
5201 TTGCTGTTTTATTGGTAATTTTTTTCAGCTCCACGATCCAGCCTAGGATCATATGTTGTATTGCCATAACCCTCTAATCT
5281 GGAGCAGTTCCTCAGCTTTTCTTTGTTTTTTATAATAGTAATATATTTGAAAAATACAGGACAGCTAAAGGATAGAGTAT
5361 CCTTCTATTTGGGTTTTTCTGATGTTTCCTCATGGTTAGATTGGGGTAGTGCAGTGAGGGTTGAAATGCTGTAAGTGATA
5441 TGTATTGCAGGTATACATCCAGATGCACAGAATGTCCATTTGTCCCTTATTGGTGATGCTAATTTTGATCACTTGGGTAA
5521 GATGTCCAGTTTCTCCAGTGTATCGTTATTGTTTTTCCTTTTGCAATTAGTGGGTAATTTGTGAGGAGAAACTTTGAGAC
5601 CTTGTTGACAATTCTGTTCCTCATCAAATCTACCCCTCCTAGGTTTAGCATCCTTTGACGATTCTTGTCTGAATAAATTT
5681 TTACTAGGATGTTTCCAAAATTGTGATTGTTCTAACTCTATTATTATTTCTGTATTAATTAGTCATCATTCTACTGTAAG
5761 GAAGAGGTTTCCCTTTATCATCAACTTCGAGTAAGTACTTTTTTCTGAGCCATTTGAATATTCCTTACTAGATGTGGTGC
5841 CTCTTTACCCCAATTACTTAAGTTTGTATTTCCAAAGAACAAGGGTGTTTTCCTGCATAGCCATAGCACAATTACCAAAA
5921 TCAGAAAATTAACATTAATACTTTACTAT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guugaggcuAUACGUUACCCAu 5'
                   | | :||||||| 
Target 5' tttggcattTTTTTAATGGGTt 3'
 2561 - 2582 145.00 -9.50
2 
miRNA  3' guUGAGGCUAUACGUUACCCAu 5'
            ::|::  | || |:||||| 
Target 5' ctGTTTTTCTCTGGAGTGGGTg 3'
 4923 - 4944 136.00 -15.80
3 
miRNA  3' guuGAGGCUAUACGUUACCCAu 5'
             :|::|  || :|:||||| 
Target 5' tccTTTTGCAAT-TAGTGGGTa 3'
 5556 - 5576 134.00 -12.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31500285 19 COSMIC
COSN30448641 21 COSMIC
COSN30146251 48 COSMIC
COSN30129109 118 COSMIC
COSN1239373 222 COSMIC
COSN26303311 535 COSMIC
COSN10001276 637 COSMIC
COSN23631336 767 COSMIC
COSN19366110 773 COSMIC
COSN24518053 776 COSMIC
COSN24834373 797 COSMIC
COSN20090529 841 COSMIC
COSN32061078 841 COSMIC
COSN20090530 849 COSMIC
COSN26087588 1185 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1275414936 1 dbSNP
rs773001526 3 dbSNP
rs747171102 4 dbSNP
rs1392148654 7 dbSNP
rs770995457 13 dbSNP
rs1426031046 14 dbSNP
rs776845007 15 dbSNP
rs759703483 18 dbSNP
rs537906679 19 dbSNP
rs1431844750 28 dbSNP
rs1201438461 38 dbSNP
rs1378780918 39 dbSNP
rs1465107997 42 dbSNP
rs763107460 45 dbSNP
rs775872414 47 dbSNP
rs1362475986 48 dbSNP
rs200095932 49 dbSNP
rs1302818348 51 dbSNP
rs1166990694 52 dbSNP
rs917854971 60 dbSNP
rs1367641707 63 dbSNP
rs1182135490 64 dbSNP
rs945326670 68 dbSNP
rs1034985134 72 dbSNP
rs1274416492 75 dbSNP
rs1042396690 77 dbSNP
rs1386900812 79 dbSNP
rs571422001 82 dbSNP
rs925359214 83 dbSNP
rs1240148620 91 dbSNP
rs936801612 98 dbSNP
rs1404295208 100 dbSNP
rs1329492224 105 dbSNP
rs1288859939 113 dbSNP
rs972167747 120 dbSNP
rs1330971255 121 dbSNP
rs1050333848 127 dbSNP
rs889974278 140 dbSNP
rs11555853 147 dbSNP
rs952230820 151 dbSNP
rs1471632100 156 dbSNP
rs1158959816 159 dbSNP
rs1471003699 162 dbSNP
rs1008367077 163 dbSNP
rs986329309 164 dbSNP
rs1041252293 167 dbSNP
rs910778507 168 dbSNP
rs1454389351 170 dbSNP
rs897418855 186 dbSNP
rs993531327 187 dbSNP
rs1450417264 193 dbSNP
rs538825013 196 dbSNP
rs1289707864 206 dbSNP
rs1026018336 222 dbSNP
rs951874736 237 dbSNP
rs1307429513 239 dbSNP
rs553726248 240 dbSNP
rs1371874761 242 dbSNP
rs975707770 246 dbSNP
rs1276708144 252 dbSNP
rs1033449216 255 dbSNP
rs924264816 257 dbSNP
rs992002910 258 dbSNP
rs1289721976 262 dbSNP
rs1358389649 265 dbSNP
rs769349078 267 dbSNP
rs1396459095 269 dbSNP
rs13392119 271 dbSNP
rs774982146 273 dbSNP
rs948550039 277 dbSNP
rs1044225966 280 dbSNP
rs1194510579 280 dbSNP
rs1414341454 285 dbSNP
rs1417769387 291 dbSNP
rs1216280469 298 dbSNP
rs1181516653 310 dbSNP
rs1280915539 313 dbSNP
rs536185049 317 dbSNP
rs1366985236 319 dbSNP
rs1270772255 324 dbSNP
rs1458071093 327 dbSNP
rs1164602527 334 dbSNP
rs1401737518 335 dbSNP
rs1338212547 337 dbSNP
rs1363197592 341 dbSNP
rs978492767 343 dbSNP
rs1002751943 345 dbSNP
rs1360551987 350 dbSNP
rs925334290 356 dbSNP
rs936731324 358 dbSNP
rs1015501471 359 dbSNP
rs897825056 361 dbSNP
rs1419569182 362 dbSNP
rs554517471 364 dbSNP
rs1479099431 367 dbSNP
rs576034461 375 dbSNP
rs533752673 376 dbSNP
rs911318002 382 dbSNP
rs944176029 383 dbSNP
rs1305998268 385 dbSNP
rs952241231 390 dbSNP
rs1311722163 391 dbSNP
rs986275724 392 dbSNP
rs1041198240 393 dbSNP
rs1220494506 397 dbSNP
rs897409226 405 dbSNP
rs1017789758 407 dbSNP
rs1415228211 412 dbSNP
rs1358824481 413 dbSNP
rs748622797 418 dbSNP
rs966251718 423 dbSNP
rs1300758842 424 dbSNP
rs543462673 425 dbSNP
rs1446806541 428 dbSNP
rs1354699659 436 dbSNP
rs555599326 440 dbSNP
rs924880281 441 dbSNP
rs772588221 442 dbSNP
rs887428518 448 dbSNP
rs934331337 449 dbSNP
rs990236015 456 dbSNP
rs1006313605 458 dbSNP
rs1033397073 460 dbSNP
rs1483061308 461 dbSNP
rs1034697056 462 dbSNP
rs960926295 466 dbSNP
rs894900420 467 dbSNP
rs1233628404 468 dbSNP
rs1013424825 472 dbSNP
rs1456457772 477 dbSNP
rs1257414396 479 dbSNP
rs1233792827 489 dbSNP
rs1257343165 492 dbSNP
rs1310334476 496 dbSNP
rs576963767 497 dbSNP
rs8390 502 dbSNP
rs948474127 509 dbSNP
rs1310918305 510 dbSNP
rs967013994 511 dbSNP
rs1398918531 515 dbSNP
rs375508912 521 dbSNP
rs1185071906 522 dbSNP
rs1352076225 523 dbSNP
rs1163158660 525 dbSNP
rs1423536924 527 dbSNP
rs1381168162 530 dbSNP
rs1180738411 532 dbSNP
rs1437945794 536 dbSNP
rs1382938545 538 dbSNP
rs879771844 545 dbSNP
rs1489439701 551 dbSNP
rs192854805 557 dbSNP
rs1220572036 561 dbSNP
rs907036060 562 dbSNP
rs938558489 569 dbSNP
rs530390498 573 dbSNP
rs1237470363 580 dbSNP
rs1375586472 587 dbSNP
rs1168659232 589 dbSNP
rs1036892517 590 dbSNP
rs958033539 592 dbSNP
rs1387967748 595 dbSNP
rs985433893 597 dbSNP
rs897095256 598 dbSNP
rs767704653 602 dbSNP
rs1160731206 608 dbSNP
rs1418122753 611 dbSNP
rs1379871988 618 dbSNP
rs1356260530 625 dbSNP
rs542174111 629 dbSNP
rs1434920245 637 dbSNP
rs1265247988 639 dbSNP
rs1190549240 643 dbSNP
rs993486188 644 dbSNP
rs1028088590 646 dbSNP
rs1214122264 649 dbSNP
rs1352569144 662 dbSNP
rs1460376922 667 dbSNP
rs3087822 668 dbSNP
rs183906288 677 dbSNP
rs1309922937 681 dbSNP
rs531337119 683 dbSNP
rs1299867689 700 dbSNP
rs188293300 701 dbSNP
rs1341627832 710 dbSNP
rs112560095 711 dbSNP
rs1398462436 717 dbSNP
rs1048612295 718 dbSNP
rs10200194 724 dbSNP
rs888704995 728 dbSNP
rs139691368 729 dbSNP
rs1375971150 732 dbSNP