miRTarBase - #MIRT442617


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pre-miRNA Information
pre-miRNA hsa-mir-656   
Genomic Coordinates chr14: 101066724 - 101066801
Synonyms MIRN656, hsa-mir-656, MIR656
Description Homo sapiens miR-656 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-656-3p
Sequence 43| AAUAUUAUACAGUCAACCUCU |63
Evidence Experimental
Experiments Microarray
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs774217405 2 dbSNP
rs761669303 7 dbSNP
rs767470396 8 dbSNP
rs563910660 14 dbSNP
rs1289907362 17 dbSNP
rs1329300008 19 dbSNP
rs375626394 20 dbSNP
rs185468172 21 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol PPP3R1   
Synonyms CALNB1, CNB, CNB1
Description protein phosphatase 3 regulatory subunit B, alpha
Transcript NM_000945   
Expression
Putative miRNA Targets on PPP3R1
3'UTR of PPP3R1
(miRNA target sites are highlighted)		 
>PPP3R1|NM_000945|3'UTR
   1 CTCTTATCAGAGAGTACCACCCAACACTTTTGCTTTCTTCTCCATCTCTGAAGATCTGCTCAAGACGTCCAGCAATGCTC
  81 TCTGTGTATTTAAATGGAAGTATTTTTCTCTGTGAAGCCACATTTTCCAACATGAGCCTCATGAAGCCAACTAAGTGTTA
 161 TTGAACTGTAATTCTCTCAATAACTCAGTGTAGCACTTTAAAGTCTGAAGGACAGCAACATGAAAAGAGCATATCAATGT
 241 GGTGGAGAAAGGGAAGGGGTTGGCTTTTTAATTTATTTTTCTTCATCTTTTATAACAAGAAAGTATCTATATATACATAT
 321 GTAAATATTTATATATAGATATATGTAGCTTTCTATATATGTAGTAGGTTGGCTTTAATTTAATATACTTGATTCAGAAA
 401 CAAAACAATAGAGTACAAAAGTGCCAAGCAGAACATAAAACATCCTTACTTTTATTTCACACAGTTTTATATATAGATAG
 481 AAGACTGTACAATTTGAGCCGGGTGTTAGGCCAGCTATTTTCCTTTTCCTGTGCTTTCTCCTTTGAGAGATTGACAAAGC
 561 ATTTGTTAACGTCCTATTATTTACCTTAATTACATTTTTGTAACAAAGGAGTCTGTAACTTTATTTATACTTATGAATAT
 641 ATCCAGGGACTACTTCTCATTGCTGAGCAGCTTTTAATACACCTCTGCTTGAGGAGAAAGTCTAGTTCATTGCTACTGCC
 721 AAGAGCTAGTTCTTGTGTTCATATAGTAACTGCACAGGGCTTATAGCTGCTTCATTCTGCTACTTTGTAACTAGGAGCCA
 801 TTGCATTTATTAAATGTCCCTCAGTAACGTTAAGTGCTAGTTGTGATTTTATACATAAAGGCCAGAAGCTGTCTGAGGCA
 881 ATCATGATTGATTGTATGTATCACTTACTGAAGAATACCTGAAGTGATCATGTAACTACTTATAAGGGATATCCATTTGT
 961 TTGATTACATGGGTAAATAATTTGTCATTAAACTTGTGTTTGAATCATGAATTCCCTTGTTTCAAAAGACTTGCAGCTAA
1041 TCTAAAAAACTGGTGATATTTAATATGCATGTATGTATCTAAACACCCACATATATTTGTGGTTTAAGTGTGAGAAATCT
1121 TGCTAATCTATATGCCACAGAAGAGCAAAATTGTATCCAAATTTATGCCACTTAAATTTCTTTACCACGAGGGATAGAGC
1201 ATGCATACTGGTTTTTTTTTCTTGATTTGCCCATATAATTGGTAATGGATAACTTAATAAATTTGTGTGATATAAAAGTA
1281 GTGTATCATGTTCTACTGTTTGATCTTATCCCTTCCCATTTCTGCAAAGGTACTGTTAGCTGGAAGAAAAACATTTTGGT
1361 TAGCTTTGTATGACAGTAGTCTTTCCCTTTATAGTTTCTCTATAAAAACTGGTTTTAAAATCAGTGGAAAAGGGCAGGTT
1441 GAATCAAGGTGAATCAATCTGAAATTGAGCACACCTGCCTGCCATCGCTGTTCCTTCAACTGAGTGCTGCACATCATGGG
1521 CTCTGTCTGTGAGAGAAAAATCCCGGTGCTTGGTGTCCTTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGT
1601 ACCTCTTGTTTACATAATTTGCATAATTTTAAAAGATAATGTTGCCAAACTTTGGAAATGTTAATGTTCAGACTGAAAAT
1681 CTCCACTACATGTAACTTTCTTCCTCTGGATCAGTGGCATGGCTTATAATCCCAGCCAGTGGTTTGAACTGTTCCAGTGT
1761 CAACTGCCATGTGCTCTGCTTCAAGGGGGAACTAGCCTTTTGTGAATTTTTTGTACATAAGTATTTGTTACAAATATTTT
1841 AGCAAATGCTTTCTATTTCTCTTGCTTGTGCATATCTTGGCTGGCGTTACAGAAAAATAGTGTAAACATTATTTCCTTAC
1921 CGGGGAATGAGGGTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTAGTTTGTGTGTGGGGGTGGGTAAGGGAGGGGAT
2001 GGTTTATGTTGAATGTTTAGTTTTTCTTCTGCATGATACGTCATGTTGTGGGATCTTTAGAAAACTTCATACTGTATGAA
2081 TAAGAAAATAAAATATTTGAAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2161 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ucUCCAACUGA---CAUAUUAUAa 5'
            ||||||:||    | |||||| 
Target 5' gtAGGTTGGCTTTAATTTAATATa 3'
 364 - 387 139.00 -12.00
2 
miRNA  3' ucucCAACUGACAUAUUAUAa 5'
              | ||| | | |||||| 
Target 5' aactGGTGA-TATTTAATATg 3'
 1048 - 1067 124.00 -5.94
3 
miRNA  3' ucuccaacuGACAUAUUAUAa 5'
                   :|||:|:|||| 
Target 5' ttaataaatTTGTGTGATATa 3'
 1254 - 1274 124.00 -7.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30160040 3 COSMIC
COSN31584214 15 COSMIC
COSN30134866 16 COSMIC
COSN26182194 43 COSMIC
COSN31613256 56 COSMIC
COSN30123653 108 COSMIC
COSN9384683 141 COSMIC
COSN5509314 151 COSMIC
COSN5954864 160 COSMIC
COSN24294812 309 COSMIC
COSN5954863 335 COSMIC
COSN30172424 668 COSMIC
COSN20160962 731 COSMIC
COSN14942272 784 COSMIC
COSN15662112 1187 COSMIC
COSN22104187 1209 COSMIC
COSN21133429 1348 COSMIC
COSN31538023 1561 COSMIC
COSN14448827 1669 COSMIC
COSN31571525 1688 COSMIC
COSN7992334 1806 COSMIC
COSN30542732 1923 COSMIC
COSN19659820 1940 COSMIC
COSN17904347 1946 COSMIC
COSN8609452 1954 COSMIC
COSN26580306 1998 COSMIC
COSN26505095 2090 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1384414049 2 dbSNP
rs1444144548 3 dbSNP
rs1243845111 7 dbSNP
rs372874240 10 dbSNP
rs1460179959 18 dbSNP
rs1015047800 21 dbSNP
rs767424295 21 dbSNP
rs751824649 24 dbSNP
rs1196231833 27 dbSNP
rs764476662 30 dbSNP
rs1268292053 31 dbSNP
rs762565592 36 dbSNP
rs935085030 37 dbSNP
rs1382837978 38 dbSNP
rs775168479 45 dbSNP
rs368622412 48 dbSNP
rs754945144 49 dbSNP
rs1186061249 52 dbSNP
rs553214918 56 dbSNP
rs981793424 57 dbSNP
rs776266611 63 dbSNP
rs770282462 66 dbSNP
rs1056760421 67 dbSNP
rs1460187001 71 dbSNP
rs916529940 75 dbSNP
rs1310361928 79 dbSNP
rs1396611593 84 dbSNP
rs984035591 96 dbSNP
rs939563741 99 dbSNP
rs905229661 114 dbSNP
rs1384663793 118 dbSNP
rs1246415033 122 dbSNP
rs1045081449 130 dbSNP
rs1225372988 132 dbSNP
rs1296652727 135 dbSNP
rs1305983173 138 dbSNP
rs1206963938 141 dbSNP
rs946671137 142 dbSNP
rs1482967493 150 dbSNP
rs1298753287 151 dbSNP
rs1409303179 157 dbSNP
rs748964144 161 dbSNP
rs915350038 161 dbSNP
rs875 169 dbSNP
rs935195151 175 dbSNP
rs371265804 180 dbSNP
rs1425583097 182 dbSNP
rs1426355349 190 dbSNP
rs191957824 190 dbSNP
rs1163152251 200 dbSNP
rs3730336 202 dbSNP
rs972551487 205 dbSNP
rs1409354120 218 dbSNP
rs965862551 219 dbSNP
rs1019625922 220 dbSNP
rs1029290976 221 dbSNP
rs1453375218 224 dbSNP
rs973094528 231 dbSNP
rs1471315251 233 dbSNP
rs1270494304 237 dbSNP
rs1216476542 240 dbSNP
rs1222729896 250 dbSNP
rs1311626253 253 dbSNP
rs1396542327 254 dbSNP
rs1221737581 259 dbSNP
rs1265119559 266 dbSNP
rs773512158 276 dbSNP
rs1208713878 297 dbSNP
rs866273916 301 dbSNP
rs1263404938 302 dbSNP
rs1487072726 304 dbSNP
rs1187858573 309 dbSNP
rs1217684583 311 dbSNP
rs954029852 316 dbSNP
rs553786924 320 dbSNP
rs1430862171 328 dbSNP
rs1470198753 342 dbSNP
rs1021874635 348 dbSNP
rs1287638904 350 dbSNP
rs1343178163 355 dbSNP
rs1226572840 357 dbSNP
rs149881293 361 dbSNP
rs544783950 366 dbSNP
rs1289282181 368 dbSNP
rs574390985 368 dbSNP
rs1004619662 371 dbSNP
rs187546083 380 dbSNP
rs183274593 384 dbSNP
rs557152932 385 dbSNP
rs1046166881 388 dbSNP
rs758631487 388 dbSNP
rs1216913444 394 dbSNP
rs1035182036 405 dbSNP
rs1292077098 409 dbSNP
rs1455682532 411 dbSNP
rs947740832 415 dbSNP
rs1196848612 416 dbSNP
rs1270325391 417 dbSNP
rs1480498646 417 dbSNP
rs3770643 418 dbSNP
rs1405679246 425 dbSNP
rs748693617 426 dbSNP
rs1402419220 430 dbSNP
rs781545680 432 dbSNP
rs1004234966 434 dbSNP
rs905448061 442 dbSNP
rs1422913195 448 dbSNP
rs1430761494 453 dbSNP
rs1199538132 454 dbSNP
rs1305220780 457 dbSNP
rs1346175551 458 dbSNP
rs558768977 467 dbSNP
rs916241199 476 dbSNP
rs1045702107 478 dbSNP
rs946752322 485 dbSNP
rs1312379729 489 dbSNP
rs538733552 490 dbSNP
rs1357741342 491 dbSNP
rs866775529 500 dbSNP
rs1052498050 501 dbSNP
rs768268555 524 dbSNP
rs566650181 527 dbSNP
rs374215447 528 dbSNP
rs546708904 528 dbSNP
rs574424609 528 dbSNP
rs972989482 531 dbSNP
rs1230745925 535 dbSNP
rs1471113011 551 dbSNP
rs1486070402 560 dbSNP
rs1384307338 570 dbSNP
rs1442567346 571 dbSNP
rs1165290723 576 dbSNP
rs1267311317 580 dbSNP
rs1366392059 611 dbSNP
rs1409673810 613 dbSNP
rs912667695 615 dbSNP
rs554319134 617 dbSNP
rs1206721539 618 dbSNP
rs1315001350 620 dbSNP
rs1380980760 621 dbSNP
rs935417136 622 dbSNP
rs1248600465 626 dbSNP
rs911761769 629 dbSNP
rs530007431 634 dbSNP
rs1213688267 637 dbSNP
rs1021590357 650 dbSNP
rs1011539638 651 dbSNP
rs567658950 652 dbSNP
rs921888785 653 dbSNP
rs1031895574 655 dbSNP
rs1185192975 656 dbSNP
rs1299445993 658 dbSNP
rs754046174 658 dbSNP
rs1475173390 659 dbSNP
rs202123533 659 dbSNP
rs568541898 667 dbSNP
rs1410629824 675 dbSNP
rs1336221738 677 dbSNP
rs1404504486 685 dbSNP
rs74553156 687 dbSNP
rs1337789285 690 dbSNP
rs1326224970 691 dbSNP
rs1429512648 694 dbSNP
rs1268078339 700 dbSNP
rs1341097474 710 dbSNP
rs749626191 716 dbSNP
rs907352881 718 dbSNP
rs1262038126 720 dbSNP
rs1321317646 721 dbSNP
rs1243453701 732 dbSNP
rs983237792 746 dbSNP
rs1191235701 753 dbSNP
rs1244042202 755 dbSNP
rs1475889718 757 dbSNP
rs746447955 763 dbSNP
rs959768696 770 dbSNP
rs780591290 774 dbSNP
rs894857655 784 dbSNP
rs1384649522 787 dbSNP
rs1399298270 802 dbSNP
rs1320736302 805 dbSNP
rs114706405 812 dbSNP
rs930962748 815 dbSNP
rs1003733891 816 dbSNP
rs1176447245 822 dbSNP
rs758085224 824 dbSNP
rs562663123 828 dbSNP
rs190358091 829 dbSNP
rs1172050548 834 dbSNP
rs1256537028 837 dbSNP
rs1011559572 845 dbSNP
rs532369961 846 dbSNP
rs1286171382 855 dbSNP
rs1052380115 858 dbSNP
rs1447787853 862 dbSNP
rs1198983992 863 dbSNP
rs1247133454 868 dbSNP
rs1266781428 874 dbSNP
rs999449763 887 dbSNP
rs1481478089 892 dbSNP
rs1200721528 893 dbSNP
rs1363696120 894 dbSNP
rs1452339537 896 dbSNP
rs781334368 904 dbSNP
rs757223763 907 dbSNP
rs1386150260 908 dbSNP
rs1419856538 914 dbSNP
rs1302179359 934 dbSNP
rs1363106462 938 dbSNP
rs1406219911 940 dbSNP
rs1051772805 943 dbSNP
rs368363688 949 dbSNP
rs1243686198 954 dbSNP
rs931845486 963 dbSNP
rs921745371 969 dbSNP
rs751826079 986 dbSNP
rs1221975343 989 dbSNP
rs941939585 991 dbSNP
rs907572883 992 dbSNP
rs1490913330 998 dbSNP
rs1223315527 999 dbSNP
rs1249976669 1000 dbSNP
rs1417789897 1006 dbSNP
rs983122693 1011 dbSNP
rs1229854187 1019 dbSNP
rs1343166780 1028 dbSNP
rs956053598 1030 dbSNP
rs1226667427 1043 dbSNP
rs1385510769 1048 dbSNP
rs1364696803 1050 dbSNP
rs1444418369 1060 dbSNP
rs764177737 1067 dbSNP
rs535003691 1069 dbSNP
rs1396002558 1073 dbSNP
rs1449599589 1079 dbSNP
rs971604200 1079 dbSNP
rs1023141733 1081 dbSNP
rs1013066030 1082 dbSNP
rs1330852295 1086 dbSNP
rs894908301 1087 dbSNP
rs980247285 1092 dbSNP
rs1312734807 1094 dbSNP
rs540334299 1101 dbSNP
rs1299409859 1103 dbSNP
rs752517347 1108 dbSNP
rs1361843640 1113 dbSNP
rs574306332 1118 dbSNP
rs896814353 1121 dbSNP
rs1251800059 1122 dbSNP
rs1239293713 1125 dbSNP
rs111963921 1130 dbSNP
rs182876239 1134 dbSNP
rs762648649 1151 dbSNP
rs575570216 1153 dbSNP
rs943966818 1155 dbSNP
rs1011193275 1156 dbSNP
rs1446025372 1157 dbSNP
rs1165048403 1160 dbSNP
rs72892489 1167 dbSNP
rs1460048089 1175 dbSNP
rs1031172137 1184 dbSNP
rs1169194683 1184 dbSNP
rs1049568687 1188 dbSNP
rs999498861 1191 dbSNP
rs753771228 1192 dbSNP
rs1334381299 1195 dbSNP
rs1384731882 1197 dbSNP
rs914670224 1199 dbSNP
rs990233276 1200 dbSNP
rs1051882717 1201 dbSNP
rs1229659166 1203 dbSNP
rs538816425 1211 dbSNP
rs1202344645 1221 dbSNP
rs1323440616 1221 dbSNP
rs191552564 1221 dbSNP
rs200637143 1221 dbSNP
rs1182036332 1224 dbSNP
rs867710115 1229 dbSNP
rs1260581754 1241 dbSNP
rs1426411066 1244 dbSNP
rs1254112094 1246 dbSNP
rs1195194632 1247 dbSNP
rs1423738924 1248 dbSNP
rs1037930696 1249 dbSNP
rs1174224222 1253 dbSNP
rs1407961530 1265 dbSNP
rs941807764 1265 dbSNP
rs1288108138 1267 dbSNP
rs1197661520 1273 dbSNP
rs907813219 1282 dbSNP
rs1278863220 1285 dbSNP
rs1023192374 1294 dbSNP
rs1222182374 1298 dbSNP
rs1313349319 1302 dbSNP
rs1483466415 1309 dbSNP
rs991683359 1313 dbSNP
rs1259411604 1315 dbSNP
rs1484655649 1325 dbSNP
rs553150084 1327 dbSNP
rs1263225498 1330 dbSNP
rs1047651318 1334 dbSNP
rs1196709358 1338 dbSNP
rs1427138481 1349 dbSNP
rs1433766002 1367 dbSNP
rs376258107 1370 dbSNP
rs1158089710 1371 dbSNP
rs1343232219 1374 dbSNP
rs185904896 1375 dbSNP
rs995261383 1378 dbSNP
rs1299068328 1381 dbSNP
rs896865704 1388 dbSNP
rs552830796 1400 dbSNP
rs928267212 1400 dbSNP
rs1285320914 1413 dbSNP
rs1362000733 1420 dbSNP
rs979917918 1424 dbSNP
rs532704300 1434 dbSNP
rs1305222633 1439 dbSNP
rs1319138559 1443 dbSNP
rs1218277843 1448 dbSNP
rs891055705 1451 dbSNP
rs1490094797 1457 dbSNP
rs1219612368 1459 dbSNP
rs1049619311 1467 dbSNP
rs1488735398 1472 dbSNP
rs932510842 1477 dbSNP
rs914295308 1479 dbSNP
rs1441341259 1486 dbSNP
rs892969161 1487 dbSNP
rs139002103 1489 dbSNP
rs570020591 1495 dbSNP
rs1384809397 1501 dbSNP
rs1423051408 1503 dbSNP
rs1308437643 1512 dbSNP
rs1325596905 1515 dbSNP
rs958174700 1519 dbSNP
rs1031224461 1520 dbSNP
rs1054662058 1526 dbSNP
rs978298874 1530 dbSNP
rs1305788647 1531 dbSNP
rs934763756 1539 dbSNP
rs1241284470 1542 dbSNP
rs1314869738 1543 dbSNP
rs549915119 1544 dbSNP
rs1045773971 1545 dbSNP
rs950016657 1548 dbSNP
rs916187086 1560 dbSNP
rs1231082834 1564 dbSNP
rs1459068040 1568 dbSNP
rs1179019843 1581 dbSNP
rs150911779 1599 dbSNP
rs772961304 1604 dbSNP
rs201974332 1608 dbSNP
rs1414565971 1609 dbSNP
rs1409428879 1610 dbSNP
rs900591754 1613 dbSNP
rs1168471770 1614 dbSNP
rs1403075668 1614 dbSNP
rs1448238394 1617 dbSNP
rs1365468603 1618 dbSNP
rs1381049682 1620 dbSNP
rs1449966386 1622 dbSNP
rs1285621731 1626 dbSNP
rs1356676897 1642 dbSNP
rs569203346 1647 dbSNP
rs1472957357 1648 dbSNP
rs1270354292 1656 dbSNP
rs530252705 1671 dbSNP
rs1319898923 1673 dbSNP
rs1199209717 1684 dbSNP
rs181065973 1690 dbSNP
rs1203259596 1691 dbSNP
rs1238234296 1692 dbSNP
rs1475244789 1696 dbSNP
rs961174627 1697 dbSNP
rs1425887429 1700 dbSNP
rs1466542265 1704 dbSNP
rs1176378077 1708 dbSNP
rs1404307676 1709 dbSNP
rs1416501740 1712 dbSNP
rs1490909144 1714 dbSNP
rs1340695247 1718 dbSNP
rs1290991106 1727 dbSNP
rs1275695863 1731 dbSNP
rs1341866483 1731 dbSNP
rs1015270896 1733 dbSNP
rs1209625316 1748 dbSNP
rs1006072290 1751 dbSNP
rs1007877572 1754 dbSNP
rs1262408138 1756 dbSNP
rs955023378 1757 dbSNP
rs1262999527 1758 dbSNP
rs552514873 1763 dbSNP
rs1028236752 1769 dbSNP
rs1349299923 1784 dbSNP
rs1213912206 1789 dbSNP
rs532306876 1801 dbSNP
rs776426077 1814 dbSNP
rs868234157 1817 dbSNP
rs1427781397 1818 dbSNP
rs1406338791 1819 dbSNP
rs893003008 1826 dbSNP
rs1173513160 1833 dbSNP
rs1384719334 1835 dbSNP
rs1399691208 1835 dbSNP
rs1295985629 1854 dbSNP
rs1054312642 1855 dbSNP
rs1400046728 1855 dbSNP
rs1282161941 1859 dbSNP
rs938578410 1872 dbSNP
rs906904332 1876 dbSNP
rs1044464459 1886 dbSNP
rs1275150905 1888 dbSNP
rs903293503 1890 dbSNP
rs1322565663 1892 dbSNP
rs1403406906 1897 dbSNP
rs1288404000 1898 dbSNP
rs948375445 1901 dbSNP
rs914323599 1902 dbSNP
rs770318852 1909 dbSNP
rs1221838964 1911 dbSNP
rs1266938371 1916 dbSNP
rs1159775159 1920 dbSNP
rs989884853 1921 dbSNP
rs950068611 1922 dbSNP
rs1468902352 1931 dbSNP
rs936867791 1933 dbSNP
rs1381775752 1934 dbSNP
rs201762572 1940 dbSNP
rs1180149708 1941 dbSNP
rs1301924478 1942 dbSNP
rs924090998 1942 dbSNP
rs1388402006 1943 dbSNP
rs1479093374 1943 dbSNP
rs1247530055 1944 dbSNP
rs1324154398 1944 dbSNP
rs1335153140 1944 dbSNP
rs978352926 1945 dbSNP
rs1311277273 1946 dbSNP
rs1354668019 1946 dbSNP
rs879178383 1946 dbSNP
rs375058985 1947 dbSNP
rs954950729 1948 dbSNP
rs1030548030 1949 dbSNP
rs867926671 1950 dbSNP
rs1239182444 1951 dbSNP
rs975150808 1951 dbSNP
rs1439851863 1952 dbSNP
rs1458977896 1952 dbSNP
rs964713772 1952 dbSNP
rs1016791058 1953 dbSNP
rs1271216232 1953 dbSNP
rs1395683707 1953 dbSNP
rs200226217 1954 dbSNP
rs560363918 1954 dbSNP
rs58611793 1954 dbSNP
rs1006292828 1955 dbSNP
rs1209879990 1955 dbSNP
rs1463938893 1955 dbSNP
rs1329100806 1956 dbSNP
rs1400699341 1958 dbSNP
rs886312171 1958 dbSNP
rs1026146431 1959 dbSNP
rs1265649482 1959 dbSNP
rs1055771566 1960 dbSNP
rs1338556901 1961 dbSNP
rs1220945165 1962 dbSNP
rs1279366931 1965 dbSNP
rs1224822882 1966 dbSNP
rs1323502395 1967 dbSNP
rs1173624814 1968 dbSNP
rs1195259636 1968 dbSNP
rs1200682656 1968 dbSNP
rs1208459881 1968 dbSNP
rs1258202033 1968 dbSNP
rs1261787297 1968 dbSNP
rs1350204867 1968 dbSNP
rs1360684339 1968 dbSNP
rs1424241830 1968 dbSNP
rs1432579214 1968 dbSNP
rs1476568914 1968 dbSNP
rs1483996076 1968 dbSNP
rs772073707 1968 dbSNP
rs1233461250 1969 dbSNP
rs1284841941 1969 dbSNP
rs202192214 1969 dbSNP
rs1345214080 1970 dbSNP
rs1273878111 1973 dbSNP
rs1433900656 1975 dbSNP
rs72832008 1983 dbSNP
rs1488076545 1984 dbSNP
rs1189431773 1994 dbSNP
rs1433531781 2019 dbSNP
rs370531080 2019 dbSNP
rs868381199 2039 dbSNP
rs367782147 2040 dbSNP
rs1386370259 2047 dbSNP
rs1159268424 2050 dbSNP
rs1002675800 2058 dbSNP
rs142228295 2071 dbSNP
rs140149409 2073 dbSNP
rs1426038298 2076 dbSNP
rs1368981922 2080 dbSNP
rs1391171928 2092 dbSNP
rs948402609 2093 dbSNP
rs962509609 2096 dbSNP
rs892789201 2105 dbSNP
rs560709392 2107 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000234310.3 | 3UTR | UUGGCUUUAAUUUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUAD -0.767 0.04 -0.600 0.1 6 Click to see details
LUSC -0.326 0.06 -0.321 0.06 24 Click to see details
CHOL -0.687 0.07 -0.829 0.02 6 Click to see details
BRCA -0.187 0.08 -0.232 0.04 56 Click to see details
UCEC -0.399 0.09 -0.429 0.07 13 Click to see details
KICH 0.565 0.12 0.371 0.23 6 Click to see details
KIRC -0.458 0.13 -0.571 0.07 8 Click to see details
PCPG 0.852 0.18 1.000 0.5 3 Click to see details
STAD -0.149 0.23 -0.104 0.31 26 Click to see details
LIHC 0.126 0.24 0.183 0.15 35 Click to see details
CESC -0.612 0.29 -0.500 0.33 3 Click to see details
PAAD 0.409 0.3 0.400 0.3 4 Click to see details
HNSC -0.092 0.3 -0.047 0.39 36 Click to see details
THCA 0.142 0.33 0.322 0.15 12 Click to see details
KIRP -0.095 0.4 -0.050 0.45 9 Click to see details
PRAD -0.022 0.45 0.090 0.29 39 Click to see details
ESCA -0.026 0.48 -0.071 0.44 7 Click to see details
BLCA 0.007 0.49 0.108 0.34 17 Click to see details
BLCA 0.007 0.49 0.108 0.34 17 Click to see details
117 hsa-miR-656-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT054590 BMPR1A bone morphogenetic protein receptor type 1A 3 1
MIRT070954 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT080090 C18ORF25 chromosome 18 open reading frame 25 2 6
MIRT107594 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 8
MIRT113091 CCND2 cyclin D2 2 2
MIRT156603 COQ10B coenzyme Q10B 2 2
MIRT216714 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT261132 TRIM8 tripartite motif containing 8 2 2
MIRT262930 ARID5B AT-rich interaction domain 5B 2 4
MIRT267010 ZDHHC5 zinc finger DHHC-type containing 5 2 6
MIRT338333 IKZF4 IKAROS family zinc finger 4 2 6
MIRT378852 ITGB8 integrin subunit beta 8 2 2
MIRT441577 EXOC5 exocyst complex component 5 2 2
MIRT441972 RNF41 ring finger protein 41 2 2
MIRT442617 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha 2 2
MIRT447730 DGKH diacylglycerol kinase eta 2 2
MIRT449237 KIAA0408 KIAA0408 2 2
MIRT449884 PRMT7 protein arginine methyltransferase 7 2 2
MIRT452912 ZNF138 zinc finger protein 138 2 2
MIRT458867 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT480582 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT483118 SH3BP5 SH3 domain binding protein 5 2 2
MIRT493755 GNG5 G protein subunit gamma 5 2 8
MIRT504369 ARID1B AT-rich interaction domain 1B 2 4
MIRT505523 SPATA2 spermatogenesis associated 2 2 10
MIRT505628 SLC16A1 solute carrier family 16 member 1 2 6
MIRT506382 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT507045 HIC2 HIC ZBTB transcriptional repressor 2 2 6
MIRT507416 ELK4 ELK4, ETS transcription factor 2 4
MIRT508194 PTP4A2 protein tyrosine phosphatase type IVA, member 2 2 6
MIRT508599 CREB1 cAMP responsive element binding protein 1 2 6
MIRT508617 HOXC4 homeobox C4 2 8
MIRT508692 NRIP1 nuclear receptor interacting protein 1 2 4
MIRT509017 CUL2 cullin 2 2 8
MIRT509079 RABGAP1 RAB GTPase activating protein 1 2 10
MIRT509970 CRIM1 cysteine rich transmembrane BMP regulator 1 2 4
MIRT510172 STARD8 StAR related lipid transfer domain containing 8 2 8
MIRT510370 ZNF703 zinc finger protein 703 2 6
MIRT510667 TMBIM6 transmembrane BAX inhibitor motif containing 6 2 2
MIRT511116 NFIB nuclear factor I B 2 6
MIRT511357 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 2 6
MIRT511423 HSP90AA1 heat shock protein 90 alpha family class A member 1 2 6
MIRT512295 AMER1 APC membrane recruitment protein 1 2 6
MIRT514084 MGAT4C MGAT4 family member C 2 4
MIRT516900 RAI1 retinoic acid induced 1 2 4
MIRT516944 SLC35F6 solute carrier family 35 member F6 2 8
MIRT518816 AKAP8 A-kinase anchoring protein 8 2 4
MIRT519244 TNFSF9 TNF superfamily member 9 2 4
MIRT519573 ZXDA zinc finger, X-linked, duplicated A 2 6
MIRT519870 ZFP62 ZFP62 zinc finger protein 2 6
MIRT520892 STRN striatin 2 4
MIRT520963 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 2 6
MIRT521932 PHF8 PHD finger protein 8 2 10
MIRT522188 NR2C2 nuclear receptor subfamily 2 group C member 2 2 6
MIRT523594 FZD5 frizzled class receptor 5 2 4
MIRT523810 FAM19A1 family with sequence similarity 19 member A1, C-C motif chemokine like 2 4
MIRT527780 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 2 2
MIRT528048 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT528241 SPIN4 spindlin family member 4 2 2
MIRT534474 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT538907 BRI3BP BRI3 binding protein 2 2
MIRT540705 PDPK1 3-phosphoinositide dependent protein kinase 1 2 4
MIRT542593 ZBTB18 zinc finger and BTB domain containing 18 2 4
MIRT543065 BACH2 BTB domain and CNC homolog 2 2 4
MIRT543491 MDM2 MDM2 proto-oncogene 2 2
MIRT544063 KIAA1462 junctional cadherin 5 associated 2 2
MIRT545530 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 2 2
MIRT546703 RORA RAR related orphan receptor A 2 4
MIRT548248 FBXW7 F-box and WD repeat domain containing 7 2 2
MIRT549271 ASH1L ASH1 like histone lysine methyltransferase 2 2
MIRT549402 AKAP11 A-kinase anchoring protein 11 2 2
MIRT550252 EIF2B1 eukaryotic translation initiation factor 2B subunit alpha 2 2
MIRT550552 ARSK arylsulfatase family member K 2 2
MIRT550793 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial 2 2
MIRT551098 TTC8 tetratricopeptide repeat domain 8 2 2
MIRT551417 LRRC31 leucine rich repeat containing 31 2 2
MIRT551883 EPHA1 EPH receptor A1 2 2
MIRT552558 ZFP36L2 ZFP36 ring finger protein like 2 2 2
MIRT553764 TAGLN2 transgelin 2 2 2
MIRT553817 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT554978 RAB5C RAB5C, member RAS oncogene family 2 2
MIRT556427 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT556464 LMNB2 lamin B2 2 4
MIRT559180 BRAP BRCA1 associated protein 2 2
MIRT559549 ARGLU1 arginine and glutamate rich 1 2 2
MIRT560578 ZNF460 zinc finger protein 460 2 2
MIRT561173 TMEM30A transmembrane protein 30A 2 2
MIRT563712 SVIP small VCP interacting protein 2 4
MIRT564563 CCDC80 coiled-coil domain containing 80 2 2
MIRT567650 EXOC8 exocyst complex component 8 2 2
MIRT568539 ALKBH5 alkB homolog 5, RNA demethylase 2 2
MIRT571343 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase 2 2
MIRT573904 SRP9 signal recognition particle 9 2 2
MIRT611915 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT612269 SEMA3F semaphorin 3F 2 2
MIRT614457 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT615492 AJAP1 adherens junctions associated protein 1 2 4
MIRT639515 FYB FYN binding protein 1 2 2
MIRT674959 PEX2 peroxisomal biogenesis factor 2 2 2
MIRT687808 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT698408 TM9SF3 transmembrane 9 superfamily member 3 2 2
MIRT698527 TFRC transferrin receptor 2 2
MIRT702313 L1CAM L1 cell adhesion molecule 2 4
MIRT707252 SIK3 SIK family kinase 3 2 2
MIRT707265 RRAGC Ras related GTP binding C 2 2
MIRT707519 HHIP hedgehog interacting protein 2 2
MIRT707529 CXCL5 C-X-C motif chemokine ligand 5 2 2
MIRT707762 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT707793 TTYH3 tweety family member 3 2 2
MIRT707815 TMEM178B transmembrane protein 178B 2 2
MIRT708108 HERPUD2 HERPUD family member 2 2 2
MIRT708173 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT711910 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT714484 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT715016 LIN9 lin-9 DREAM MuvB core complex component 2 2
MIRT715669 SCOC short coiled-coil protein 2 2
MIRT725386 METTL8 methyltransferase like 8 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-656 Androstenedione+Letrozole sensitive cell line (MCF-7)
hsa-mir-656 Fluorouracil 3385 NSC19893 approved resistant cell line (KYSE)
hsa-mir-656 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive Low Cervical Cancer tissue
hsa-miR-656-3p Fluorouracil 3385 NSC19893 approved sensitive Low Colorectal Cancer cell line (NCM460, SW480, RKO, DLD1, SW48, HCT-116, LOVO, HT-29, HCT8, SW620)
hsa-miR-656-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-656-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-656-3p Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-656-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-656-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-656-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM47)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (RPMI2650)
hsa-miR-656-3p Sunitinib 5329102 NSC750690 approved sensitive tissue (CardB)
hsa-miR-656-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (SKOV3)
hsa-miR-656-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-656-3p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)

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