miRTarBase - #MIRT442633


—
pre-miRNA Information
pre-miRNA hsa-mir-548s   
Genomic Coordinates chr2: 11767444 - 11767525
Description Homo sapiens miR-548s stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548s
Sequence 52| AUGGCCAAAACUGCAGUUAUUUU |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 + 11767495 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1187825186 1 dbSNP
rs1161985266 4 dbSNP
rs1476642595 6 dbSNP
rs772377981 6 dbSNP
rs1427306684 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TBC1D12   
Synonyms -
Description TBC1 domain family member 12
Transcript NM_015188   
Expression
Putative miRNA Targets on TBC1D12
3'UTR of TBC1D12
(miRNA target sites are highlighted)		 
>TBC1D12|NM_015188|3'UTR
   1 TCTTCAAAATTGACAGACTAACTGACATAGAAAAAGTGGTTTTTGGATAAAGGTTTTTTGTTTCCTATGTAAAAGGCGTG
  81 GAAGAAAATGTTGGAGATACCTAAAAGAATCAAGAGGTGGAAAACTGCTGATTTTACATTTTATGGCTGAAGTAAATGAA
 161 ATAAGTAACTTATTGACAGTATTAATAAACTATTATTTTGTAGGTAGAGTCATTTTTCAAAGGAAAAAGTTTAAGTGGTG
 241 AGTTTATATTCCACAATTTGGAGTAAACAAAATGCAATAAATTTTTAAAATAGCTTTGAAGATACTTCAAATTTTTACAT
 321 CTTTTCTTTTGTAACAGTTACCACAAAGATATTCTGGAGGCTAGAGTAGGATTGTTAAATACTACTGTTAACCTCCAAAG
 401 TACTATAGTACAGACATTGTTTCCAGTTCTGACCTTTTGAAGATATTATAGACCAGTAATGAACAGATTTGGTTGTAAAT
 481 TATTTAAGTCACTGAAGATGTCATTTATCTTCATTCACAAGTTGGGGCAAATTCGAGTTACCTAGGAACTGGAAATGTTG
 561 GTGGGAGATTGTTTATTGTTTGTTTAGATGTTTTTCCATAGTATGGTGTCCATTTGTTTTTTAAGGGAAATTTTTTGTCT
 641 TCCTTAAGGAATTCCTATCACTCAGAGAATTTTAGCCATTCTGGTTCTAGTCTAACAAATTATTCATCTAATAATTTGAC
 721 ATTAAGAAAACTATAAATAACTGGTAGAAGGAAAGTGCTTTGCACTTCAGTGGATTGAAGACTTGACTTTGAGAGTAAGT
 801 CCAAAAACATATATGATGTTTCTCAGTGATAAGAGTAAAAAGTAATGAATCCTGAGAGTTCTTAAACAGCATGCTACTTG
 881 GCAAGACTTCATATTTTTTAGTTACAATTCTTCCACTGTTTAACTCCAGTTTGAAATTTGAAATCTAATATGTAGCTAAA
 961 TCTGTGACTTGTAAAACTCTATGCATAATTTTTCCTAATCAGTGGAAATAAGAATAAAAGAAAAAGGTAAAGTTAATTTT
1041 TTTTCTAAGTCTACATCCTATCTCTTGATTCAGTTGCCTGAAGAAGCTGGGTAAGGAGATTAGTCTTGTTATTGATTCTT
1121 TTATGTGTCAGTGCCATCTTAATCTCTTCACATGGTACACTAAATGCTGCCTATAACCCATCCTCATCTTCTTTACTCAT
1201 CATTGCTTTCTTCAAGGAAGGTCTTGATACTGCCCTCGTCTACCTCACTATCCGCTAGTCTAGATAGTGACTCTTTGGAA
1281 AATTGGTAGCCTCTGAATGAGTTATCCAACTTCTGCTTCCTCACATTGGCCACTTTGCATAGGTTCGGGAACTTAGCAGG
1361 TTTTAAATCATCATGCCCATGGAGGTGAAATACTTTGAGGAATGGGAACATCTCTTCACTGTGTTTTTGGATCAGCCTTC
1441 TCTCAACCGCCAAGAAATGCATGATTTCCCTGCCAACTCTAGGAAGTAGTGCTGCATGATTGAATCATTATTTGATGAAT
1521 TCTTTCATTGTAACATAGGGAGTCATTTTCAAAAAGGTAGATATGAACTTAAATTAAATTGACTTATGAATGCTTTGCCT
1601 GTGGGCCCAACAGTGTCATGACCCTCCAATTGAAACATAGCATGAATTATTTTTATGTCGAGTTCTTGAACTGCTAATCA
1681 GGTGTGTGTTTCCTTGAAGTCCAGAGCAGGATCCAGGTCAGATGAAGGAGGTGGTATGCCTGGCTTAACTGCTGAAAATA
1761 GAGCATTGAAACTCTTCACAATGTGCTGCATTGGGTTTCTGCTTGGCTTTCTCACTGAAAAGTAAATTGGGGAAAATGCT
1841 GCTTTTACTATTTTGCATTTTATAGCAACATTAACAGTCTTTTCCCAGTCAGGTGCTGTCCAGGGAACATGTTTCCCTTG
1921 GGAGGTCTGAACAGAGTGACCTGGCTTGATGTATTTCCTGAGCTCTAGTACCATATCATAGAATTAGTTAAATGTAGTCA
2001 ACAGCAATGTCAGAACAATTGACATTGTCTTTCCAAGAGTGAATGCATTGGCTTTCGGAACTGCTACTAGAGACATACAT
2081 GAGGCAGCGAACACATCTTTAGGTGGGGGCAAGGCTATATCTGATTGACAGAGATCTCTGATCTCTAATGACATATTGCT
2161 ATTGTCCTATTATGTTTAAATTTGAACCTAAATCACTTGAGTGTTATGAGTGATGGCTATATAACATGCTGTTTGGTTAG
2241 ATTTACAGTGTGTTTTTATGTTGCAGTTTAGTTTGAAACAACACTTAAGCACACTATTTCTGTTAGTGTATATAGTTTTC
2321 AAACTAACAAGCCTGCGATCCTTGTTAGTGTAGTGACTGCCTCTTTAGGAGTATGGGGCCCTAGGGTGTCCATATATTTT
2401 TACCCCATGGGTCATTCTAGTCTAAGGACTACTAGTAGAACCCTCAAAAGGTAATTGCTATTATAGGGACTTACTTATTG
2481 GAGACTGGTAATATAATAAAATATTGAAGGAGTGGCCATGGTCTTAGCAGGTTTTAGAATGACCTTTTAACTCCAGTAAC
2561 TACTTCCTTGGTATTGGTATCCTTGATAGAGGGAATATAACATCTGGCAGTAATCTCATTCAGGTTATACTACCTGACTA
2641 AATTTAATCATACTTTCATGTATTTGTTTCCTCAGTTGGACCTAAGTTACTGTATTTGTTTTTCTTATTTTTTTATTATT
2721 GTACAGTTTCTTTACCTTTCAAGTATAAATGTGTATATAAAATGTAAATACAAAGAATTCACTAAAAACCACTCATAACA
2801 ATTACTGTGTAAATAAAACTGGTAAGCAGAGTAATTACTTGAAATGAGTCTTCATTACTTTGGGGATATCTGTTTTATTT
2881 AACTGCATCTCAAGGAAACAAAGGAAATAATCTTTGTTTTTGTTTGCCAAATTTGTCTTCCAAGGAATGCACTAAGCCTT
2961 CAGTCTTTTTAGACTGACAGTACTGGCAGCTAAAATATTGTACTGTATCTTCTCTTGAGCCCAGTATGTAGGAAATATGT
3041 GATAATTCACATGGTCAGTATATGGCAGTTTTTGTTGTTGTTGTTACAGTATATTTTCAATTAAAAAAAAACTTTTCCTA
3121 AAATACTCAAAATAATGTGAAATTTAATATGGTGTTTCATTTGTTTGTCTACTCAATATATATATTTCTTACTTAATGTT
3201 CCTTTAGTCCAGGTCTACAATGCCTTATTTAAATGC
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuuuaUUGACGUC-AA-------AACCGGUa 5'
               |||| | | ||       ||||||| 
Target 5' tatccAACTTCTGCTTCCTCACATTGGCCAc 3'
 1303 - 1333 146.00 -11.12
2 
miRNA  3' uuuUAUUG-ACGUCAAAACCGGUa 5'
             ||||| ||| | |||||::| 
Target 5' tatATAACATGCTG-TTTGGTTAg 3'
 2218 - 2240 139.00 -12.70
3 
miRNA  3' uuuUAUUGACGUC----AAAACCGGUa 5'
             || ||| |||    |||| |||| 
Target 5' cctATCACT-CAGAGAATTTTAGCCAt 3'
 654 - 679 133.00 -8.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30541525 18 COSMIC
COSN21613838 25 COSMIC
COSN30110323 34 COSMIC
COSN30113867 35 COSMIC
COSN31590133 79 COSMIC
COSN31604605 105 COSMIC
COSN7075919 706 COSMIC
COSN10075645 1061 COSMIC
COSN20092171 1113 COSMIC
COSN24376087 1340 COSMIC
COSN10075646 1373 COSMIC
COSN22314844 1430 COSMIC
COSN17076202 1509 COSMIC
COSN10075647 1512 COSMIC
COSN29157795 1910 COSMIC
COSN7075920 2839 COSMIC
COSN10075648 2952 COSMIC
COSN29798794 3008 COSMIC
COSN6530698 3033 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs748989982 1 dbSNP
rs1476927928 2 dbSNP
rs770298893 2 dbSNP
rs1339703990 7 dbSNP
rs1240560866 11 dbSNP
rs778520687 16 dbSNP
rs768037309 17 dbSNP
rs1437044110 20 dbSNP
rs747412566 21 dbSNP
rs773814679 28 dbSNP
rs1484641422 29 dbSNP
rs1026450044 31 dbSNP
rs769222951 32 dbSNP
rs777338811 33 dbSNP
rs547022006 34 dbSNP
rs1202604879 42 dbSNP
rs1417592299 46 dbSNP
rs770328616 52 dbSNP
rs1313810796 53 dbSNP
rs933439473 54 dbSNP
rs747824540 78 dbSNP
rs771692125 79 dbSNP
rs1385589914 91 dbSNP
rs1283084503 95 dbSNP
rs1224636295 96 dbSNP
rs910726970 104 dbSNP
rs1347999830 112 dbSNP
rs943509681 120 dbSNP
rs980377744 125 dbSNP
rs1440848650 130 dbSNP
rs12260063 136 dbSNP
rs1314461376 138 dbSNP
rs1319934952 139 dbSNP
rs1412504989 142 dbSNP
rs939068372 146 dbSNP
rs894092842 161 dbSNP
rs1470913269 162 dbSNP
rs1409668894 170 dbSNP
rs1009815901 172 dbSNP
rs1042487762 177 dbSNP
rs1261485745 180 dbSNP
rs946522325 188 dbSNP
rs1485441557 192 dbSNP
rs529240240 201 dbSNP
rs1262890504 204 dbSNP
rs117917573 205 dbSNP
rs1003713307 207 dbSNP
rs569185326 208 dbSNP
rs1007584184 217 dbSNP
rs1373468661 220 dbSNP
rs567617096 229 dbSNP
rs901937125 232 dbSNP
rs1381664031 239 dbSNP
rs1033401868 244 dbSNP
rs1411010024 247 dbSNP
rs538115728 251 dbSNP
rs1158329112 272 dbSNP
rs543878687 281 dbSNP
rs1401256013 282 dbSNP
rs959211417 287 dbSNP
rs1466983778 288 dbSNP
rs1420300676 289 dbSNP
rs79460475 312 dbSNP
rs777007255 313 dbSNP
rs1016763408 320 dbSNP
rs760078319 322 dbSNP
rs1240824866 329 dbSNP
rs972672299 343 dbSNP
rs114530985 346 dbSNP
rs970241491 347 dbSNP
rs1243143507 349 dbSNP
rs1358213232 360 dbSNP
rs954698287 365 dbSNP
rs1319145540 371 dbSNP
rs1454340398 380 dbSNP
rs1359563156 397 dbSNP
rs987527757 398 dbSNP
rs910610703 399 dbSNP
rs943436367 401 dbSNP
rs1053916320 409 dbSNP
rs1431367195 411 dbSNP
rs915410933 412 dbSNP
rs1302690763 417 dbSNP
rs1300045675 432 dbSNP
rs1203021982 433 dbSNP
rs1377218928 435 dbSNP
rs1422841430 444 dbSNP
rs980410294 452 dbSNP
rs1034680385 453 dbSNP
rs960647961 455 dbSNP
rs571766420 467 dbSNP
rs945623649 478 dbSNP
rs1393396285 481 dbSNP
rs1042611363 490 dbSNP
rs1486477615 491 dbSNP
rs1244348750 498 dbSNP
rs1219561055 501 dbSNP
rs1490052144 504 dbSNP
rs1291916826 511 dbSNP
rs752564302 520 dbSNP
rs757390922 521 dbSNP
rs1226432359 524 dbSNP
rs1305461839 529 dbSNP
rs1264927101 532 dbSNP
rs533697994 535 dbSNP
rs116616431 536 dbSNP
rs1363922162 538 dbSNP
rs1235566197 540 dbSNP
rs1281326279 543 dbSNP
rs946583532 545 dbSNP
rs979236313 553 dbSNP
rs1303889843 556 dbSNP
rs573717324 561 dbSNP
rs536234099 562 dbSNP
rs894924914 564 dbSNP
rs1170116027 567 dbSNP
rs765429077 577 dbSNP
rs1422220634 596 dbSNP
rs1040307829 599 dbSNP
rs377612027 601 dbSNP
rs556169752 616 dbSNP
rs537093990 623 dbSNP
rs1178049157 624 dbSNP
rs1479414016 627 dbSNP
rs545246122 628 dbSNP
rs369984657 631 dbSNP
rs564932760 631 dbSNP
rs1309075520 632 dbSNP
rs1281191587 636 dbSNP
rs1029550451 638 dbSNP
rs954890926 643 dbSNP
rs143904537 644 dbSNP
rs1023052992 645 dbSNP
rs12268719 652 dbSNP
rs1371394051 658 dbSNP
rs758730680 658 dbSNP
rs1003116716 660 dbSNP
rs1350178117 661 dbSNP
rs1402878676 664 dbSNP
rs1408067759 670 dbSNP
rs1174792108 677 dbSNP
rs1469732941 679 dbSNP
rs560197212 680 dbSNP
rs989486598 685 dbSNP
rs915404712 705 dbSNP
rs960431836 708 dbSNP
rs988182678 713 dbSNP
rs1177399506 717 dbSNP
rs764214229 748 dbSNP
rs1261009008 758 dbSNP
rs1202874988 770 dbSNP
rs1324104316 774 dbSNP
rs750287669 782 dbSNP
rs1264951101 789 dbSNP
rs945537417 798 dbSNP
rs1020721182 809 dbSNP
rs978769123 810 dbSNP
rs1315170150 812 dbSNP
rs1218609864 813 dbSNP
rs928261561 814 dbSNP
rs939570551 817 dbSNP
rs1309053453 829 dbSNP
rs1204696316 830 dbSNP
rs145688606 834 dbSNP
rs1481901634 837 dbSNP
rs1452383190 843 dbSNP
rs755872161 845 dbSNP
rs979267627 852 dbSNP
rs910421911 859 dbSNP
rs943182174 870 dbSNP
rs941090351 871 dbSNP
rs1240892385 872 dbSNP
rs1182691093 876 dbSNP
rs1461628113 878 dbSNP
rs1244785719 881 dbSNP
rs976021708 894 dbSNP
rs1269023621 906 dbSNP
rs548987064 908 dbSNP
rs1260211384 911 dbSNP
rs1239863807 914 dbSNP
rs896992092 916 dbSNP
rs1313222634 917 dbSNP
rs1481025504 922 dbSNP
rs1383955140 925 dbSNP
rs74150811 926 dbSNP
rs1381009842 927 dbSNP
rs1423423491 927 dbSNP
rs566965805 930 dbSNP
rs1384957996 933 dbSNP
rs531915902 933 dbSNP
rs527889234 941 dbSNP
rs753806824 946 dbSNP
rs891068828 961 dbSNP
rs1006761732 962 dbSNP
rs1411998937 972 dbSNP
rs376098158 977 dbSNP
rs1421003189 982 dbSNP
rs1171635203 989 dbSNP
rs1370164353 997 dbSNP
rs41300227 998 dbSNP
rs1304993543 999 dbSNP
rs1369964478 1005 dbSNP
rs1044455103 1016 dbSNP
rs1446284695 1036 dbSNP
rs1262357631 1037 dbSNP
rs1217367014 1038 dbSNP
rs148940058 1040 dbSNP
rs989538591 1045 dbSNP
rs1435603455 1046 dbSNP
rs1273011431 1048 dbSNP
rs1364074924 1049 dbSNP
rs1002982929 1061 dbSNP
rs1022355870 1072 dbSNP
rs1286319157 1073 dbSNP
rs879179398 1076 dbSNP
rs1443965130 1077 dbSNP
rs1225705624 1089 dbSNP
rs1035916334 1097 dbSNP
rs1296950716 1098 dbSNP
rs1214926350 1099 dbSNP
rs1402439464 1099 dbSNP
rs967178722 1113 dbSNP
rs1296659489 1118 dbSNP
rs978314080 1124 dbSNP
rs1302050370 1145 dbSNP
rs1224287865 1151 dbSNP
rs201120679 1153 dbSNP
rs1165876490 1155 dbSNP
rs1474971384 1180 dbSNP
rs543260174 1183 dbSNP
rs778446441 1186 dbSNP
rs1195720342 1187 dbSNP
rs928114622 1199 dbSNP
rs1479446178 1202 dbSNP
rs1009237174 1214 dbSNP
rs1291804916 1215 dbSNP
rs142870352 1224 dbSNP
rs1452335936 1232 dbSNP
rs939622702 1233 dbSNP
rs115603777 1238 dbSNP
rs118030862 1239 dbSNP
rs151071329 1246 dbSNP
rs1038544635 1248 dbSNP
rs1476703743 1251 dbSNP
rs780636662 1254 dbSNP
rs746604270 1264 dbSNP
rs1187442323 1268 dbSNP
rs964570499 1272 dbSNP
rs1332412878 1311 dbSNP
rs975887352 1321 dbSNP
rs929700054 1326 dbSNP
rs556202524 1331 dbSNP
rs923213592 1340 dbSNP
rs1396920433 1344 dbSNP
rs950666924 1347 dbSNP
rs1428523242 1348 dbSNP
rs983377787 1351 dbSNP
rs1478410666 1375 dbSNP
rs1248633768 1379 dbSNP
rs771228974 1380 dbSNP
rs890922123 1387 dbSNP
rs1006773021 1392 dbSNP
rs1039569395 1397 dbSNP
rs569622360 1400 dbSNP
rs1437521101 1403 dbSNP
rs555617146 1404 dbSNP
rs561445966 1421 dbSNP
rs1010930447 1430 dbSNP
rs1200920395 1438 dbSNP
rs942035728 1446 dbSNP
rs1263081977 1448 dbSNP
rs760168403 1449 dbSNP
rs537828741 1450 dbSNP
rs927348522 1458 dbSNP
rs1441014077 1462 dbSNP
rs938855886 1470 dbSNP
rs1333041730 1471 dbSNP
rs1450201319 1475 dbSNP
rs1405203767 1477 dbSNP
rs1177108402 1480 dbSNP
rs182200598 1490 dbSNP
rs1156967796 1497 dbSNP
rs1427337309 1497 dbSNP
rs1346868427 1499 dbSNP
rs1431440370 1501 dbSNP
rs1469759019 1510 dbSNP
rs1057477886 1516 dbSNP
rs1180844920 1521 dbSNP
rs1319596070 1523 dbSNP
rs1242959916 1525 dbSNP
rs892060317 1528 dbSNP
rs541196996 1529 dbSNP
rs1010933289 1536 dbSNP
rs1222714838 1537 dbSNP
rs554314668 1539 dbSNP
rs1311029226 1541 dbSNP
rs1243448767 1553 dbSNP
rs1315311405 1560 dbSNP
rs1355283055 1561 dbSNP
rs1035196259 1562 dbSNP
rs1343369599 1569 dbSNP
rs1316239143 1578 dbSNP
rs960830355 1583 dbSNP
rs184901463 1586 dbSNP
rs763109550 1599 dbSNP
rs916808055 1605 dbSNP
rs1449200919 1607 dbSNP
rs1209931271 1609 dbSNP
rs962934565 1621 dbSNP
rs1000524193 1624 dbSNP
rs1384993459 1626 dbSNP
rs749661619 1627 dbSNP
rs1182878810 1630 dbSNP
rs973793347 1631 dbSNP
rs1247735585 1632 dbSNP
rs1240880289 1641 dbSNP
rs918238437 1642 dbSNP
rs964416760 1643 dbSNP
rs1488350399 1645 dbSNP
rs997366670 1654 dbSNP
rs74150812 1660 dbSNP
rs1358368112 1661 dbSNP
rs549751083 1663 dbSNP
rs1313078747 1671 dbSNP
rs1229833814 1675 dbSNP
rs1051254222 1680 dbSNP
rs912410523 1683 dbSNP
rs942513670 1689 dbSNP
rs562590784 1709 dbSNP
rs1400576863 1717 dbSNP
rs531722940 1718 dbSNP
rs571337379 1735 dbSNP
rs1369255992 1737 dbSNP
rs1472620027 1743 dbSNP
rs1161502100 1747 dbSNP
rs1425949151 1752 dbSNP
rs983814504 1755 dbSNP
rs545414306 1757 dbSNP
rs893085744 1766 dbSNP
rs565553444 1767 dbSNP
rs1011901573 1774 dbSNP
rs1264699156 1777 dbSNP
rs527952004 1792 dbSNP
rs751738602 1807 dbSNP
rs1158350667 1812 dbSNP
rs999623912 1814 dbSNP
rs1265686806 1815 dbSNP
rs1454369495 1834 dbSNP
rs980034194 1835 dbSNP
rs1272084286 1837 dbSNP
rs74150813 1838 dbSNP
rs1342366106 1839 dbSNP
rs1280102357 1851 dbSNP
rs1403195559 1852 dbSNP
rs938740029 1853 dbSNP
rs1294376899 1877 dbSNP
rs567817097 1880 dbSNP
rs1459680198 1889 dbSNP
rs529815238 1891 dbSNP
rs1012441712 1892 dbSNP
rs1023794264 1910 dbSNP
rs1426422633 1910 dbSNP
rs1445402635 1912 dbSNP
rs1173563173 1919 dbSNP
rs1280739689 1925 dbSNP
rs549898081 1930 dbSNP
rs569589076 1931 dbSNP
rs1479486707 1940 dbSNP
rs1232089858 1941 dbSNP
rs918268726 1949 dbSNP
rs753611606 1952 dbSNP
rs951093408 1955 dbSNP
rs1043736442 1957 dbSNP
rs1311651558 1968 dbSNP
rs904740723 1974 dbSNP
rs1388730799 1975 dbSNP
rs936322295 1976 dbSNP
rs1038692950 1980 dbSNP
rs1448007624 1994 dbSNP
rs2281791 1999 dbSNP
rs1257348464 2002 dbSNP
rs997700995 2003 dbSNP
rs1442016601 2008 dbSNP
rs1185713171 2011 dbSNP
rs1416873031 2012 dbSNP
rs140822126 2014 dbSNP
rs752263794 2017 dbSNP
rs565986701 2020 dbSNP
rs1234611840 2021 dbSNP
rs1483571681 2028 dbSNP
rs34834151 2033 dbSNP
rs1004686207 2034 dbSNP
rs1256593081 2042 dbSNP
rs1235525449 2045 dbSNP
rs534578260 2054 dbSNP
rs1181630664 2057 dbSNP
rs1409636162 2058 dbSNP
rs113012949 2062 dbSNP
rs1039547549 2064 dbSNP
rs574289887 2067 dbSNP
rs963242432 2070 dbSNP
rs980085249 2077 dbSNP
rs914404605 2080 dbSNP
rs542754170 2089 dbSNP
rs1041990095 2095 dbSNP
rs1441220772 2104 dbSNP
rs1383144757 2105 dbSNP
rs145914395 2106 dbSNP
rs1336050339 2110 dbSNP
rs1258205401 2113 dbSNP
rs935305266 2118 dbSNP
rs1285967488 2120 dbSNP
rs189765618 2127 dbSNP
rs1217605738 2130 dbSNP
rs1356202517 2131 dbSNP
rs978911760 2134 dbSNP
rs1256905098 2142 dbSNP
rs1244535876 2143 dbSNP
rs896598165 2146 dbSNP
rs545409048 2149 dbSNP
rs1023846527 2154 dbSNP
rs1381066077 2157 dbSNP
rs138848031 2160 dbSNP
rs900210016 2165 dbSNP
rs995788072 2166 dbSNP
rs1363341576 2170 dbSNP
rs1483536014 2173 dbSNP
rs770595615 2175 dbSNP
rs1026295496 2179 dbSNP
rs74150814 2182 dbSNP
rs1190909583 2187 dbSNP
rs1477487683 2188 dbSNP
rs986457926 2194 dbSNP
rs1481351280 2202 dbSNP
rs541696574 2208 dbSNP
rs1262560689 2219 dbSNP
rs963802963 2235 dbSNP
rs1489361617 2236 dbSNP
rs561509685 2240 dbSNP
rs141387219 2247 dbSNP
rs1357460946 2249 dbSNP
rs576942672 2258 dbSNP
rs975092422 2264 dbSNP
rs914412886 2266 dbSNP
rs1005142184 2267 dbSNP
rs1376791425 2270 dbSNP
rs1476916388 2271 dbSNP
rs1169491417 2278 dbSNP
rs947179778 2290 dbSNP
rs1370763826 2301 dbSNP
rs79766136 2313 dbSNP
rs1305596355 2315 dbSNP
rs1366919801 2320 dbSNP
rs924544925 2329 dbSNP
rs1171415884 2338 dbSNP
rs1478862711 2342 dbSNP
rs545631273 2346 dbSNP
rs938596869 2348 dbSNP
rs1331099115 2353 dbSNP
rs1231506877 2358 dbSNP
rs1056510923 2361 dbSNP
rs1269910706 2364 dbSNP
rs896483543 2367 dbSNP
rs1259302017 2370 dbSNP
rs1221043039 2374 dbSNP
rs1320764910 2379 dbSNP
rs948127581 2380 dbSNP
rs1233515623 2384 dbSNP
rs1204735981 2385 dbSNP
rs1045146327 2387 dbSNP
rs992807936 2395 dbSNP
rs1272501714 2408 dbSNP
rs1020789462 2411 dbSNP
rs1333251195 2417 dbSNP
rs1468213169 2428 dbSNP
rs967463085 2433 dbSNP
rs1490862745 2435 dbSNP
rs1172138673 2443 dbSNP
rs1210583733 2451 dbSNP
rs979349890 2455 dbSNP
rs563373849 2470 dbSNP
rs942845755 2471 dbSNP
rs1239217267 2474 dbSNP
rs182427602 2475 dbSNP
rs932984790 2481 dbSNP
rs1219317213 2489 dbSNP
rs552166016 2495 dbSNP
rs1346622111 2506 dbSNP
rs996103377 2527 dbSNP
rs1051414378 2536 dbSNP
rs907630818 2541 dbSNP
rs1377335169 2542 dbSNP
rs1311261952 2555 dbSNP
rs1450356419 2563 dbSNP
rs1390592992 2567 dbSNP
rs940480829 2572 dbSNP
rs1404489614 2582 dbSNP
rs1157054062 2583 dbSNP
rs1439376847 2591 dbSNP
rs1037395408 2592 dbSNP
rs72814685 2594 dbSNP
rs1001315698 2596 dbSNP
rs534647096 2602 dbSNP
rs1166342059 2605 dbSNP
rs1443612674 2610 dbSNP
rs1283322055 2616 dbSNP
rs1386486822 2625 dbSNP
rs548072032 2627 dbSNP
rs1014686711 2639 dbSNP
rs1287815447 2641 dbSNP
rs567949783 2648 dbSNP
rs1292491040 2659 dbSNP
rs1390614478 2664 dbSNP
rs887390687 2665 dbSNP
rs1378291288 2672 dbSNP
rs118185422 2675 dbSNP
rs556711108 2680 dbSNP
rs1019243230 2682 dbSNP
rs963647219 2689 dbSNP
rs1450184069 2692 dbSNP
rs967767561 2693 dbSNP
rs12773011 2700 dbSNP
rs1000322962 2702 dbSNP
rs576499512 2704 dbSNP
rs1361425503 2707 dbSNP
rs1419256544 2707 dbSNP
rs1160772094 2708 dbSNP
rs1403982529 2716 dbSNP
rs1033088720 2721 dbSNP
rs1182929319 2722 dbSNP
rs12773174 2723 dbSNP
rs193072556 2724 dbSNP
rs776200111 2726 dbSNP
rs1488381985 2727 dbSNP
rs867442388 2731 dbSNP
rs1366398839 2740 dbSNP
rs558911043 2775 dbSNP
rs1227865357 2776 dbSNP
rs373656011 2782 dbSNP
rs1361935843 2785 dbSNP
rs1229952476 2792 dbSNP
rs1245585162 2796 dbSNP
rs555609810 2799 dbSNP
rs1021769234 2807 dbSNP
rs567427872 2812 dbSNP
rs968478793 2817 dbSNP
rs977685104 2830 dbSNP
rs924458349 2841 dbSNP
rs1487441596 2849 dbSNP
rs955623032 2855 dbSNP
rs938617993 2861 dbSNP
rs907557272 2865 dbSNP
rs992702901 2866 dbSNP
rs917938520 2877 dbSNP
rs572343903 2878 dbSNP
rs1349650320 2886 dbSNP
rs1464274499 2888 dbSNP
rs541784754 2894 dbSNP
rs1166014638 2895 dbSNP
rs1186511567 2900 dbSNP
rs948013517 2904 dbSNP
rs1037446324 2906 dbSNP
rs920310494 2907 dbSNP
rs937176660 2911 dbSNP
rs1264761541 2914 dbSNP
rs1045072988 2917 dbSNP
rs1487989976 2922 dbSNP
rs561547943 2932 dbSNP
rs1223509235 2934 dbSNP
rs1456346900 2938 dbSNP
rs759339370 2939 dbSNP
rs931407258 2941 dbSNP
rs1219215080 2944 dbSNP
rs574268852 2955 dbSNP
rs147012097 2965 dbSNP
rs768653221 2979 dbSNP
rs563696421 2981 dbSNP
rs769529074 2983 dbSNP
rs1294429834 2989 dbSNP
rs1443599933 2990 dbSNP
rs1162010681 3003 dbSNP
rs1390108774 3006 dbSNP
rs1042005256 3013 dbSNP
rs1374286217 3015 dbSNP
rs903219473 3018 dbSNP
rs1434811763 3025 dbSNP
rs1319022351 3030 dbSNP
rs1000165897 3033 dbSNP
rs183597816 3035 dbSNP
rs1425457414 3036 dbSNP
rs1033098571 3038 dbSNP
rs1041252197 3040 dbSNP
rs1237394932 3056 dbSNP
rs1199178923 3072 dbSNP
rs1396858519 3072 dbSNP
rs1312033790 3075 dbSNP
rs1320012870 3077 dbSNP
rs1208132596 3078 dbSNP
rs1241013387 3103 dbSNP
rs1302288177 3103 dbSNP
rs1236824255 3104 dbSNP
rs1375126109 3108 dbSNP
rs1309068756 3109 dbSNP
rs899527072 3111 dbSNP
rs1399271582 3112 dbSNP
rs1465133569 3113 dbSNP
rs964103673 3116 dbSNP
rs996492022 3118 dbSNP
rs997030929 3119 dbSNP
rs137894908 3121 dbSNP
rs1179030941 3124 dbSNP
rs1420745301 3134 dbSNP
rs1206560376 3140 dbSNP
rs955709937 3150 dbSNP
rs1264812437 3151 dbSNP
rs1180154259 3155 dbSNP
rs560957846 3160 dbSNP
rs908778494 3160 dbSNP
rs1213281962 3171 dbSNP
rs961695965 3174 dbSNP
rs1285681965 3175 dbSNP
rs1483347070 3176 dbSNP
rs1338007562 3184 dbSNP
rs1311167586 3199 dbSNP
rs559341344 3205 dbSNP
rs149469778 3210 dbSNP
rs920361432 3211 dbSNP
rs1314245758 3216 dbSNP
rs1417409939 3221 dbSNP
rs371647881 3227 dbSNP
rs1001559102 3231 dbSNP
rs1031923023 3236 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuuauugacgucaaAACCGGUa 5'
                         ||||||| 
Target 5' ---------------UUGGCCAc 3'
 		1 - 8
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000225235.4 | 3UTR | UUGGCCACUUUGCAUAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
UCEC 0.62 0.02 0.655 0.01 11 Click to see details
PRAD 0.83 0.04 0.900 0.02 5 Click to see details
BRCA -0.282 0.05 -0.208 0.12 35 Click to see details
THCA -0.235 0.09 -0.257 0.07 34 Click to see details
CHOL -0.715 0.14 -0.800 0.1 4 Click to see details
STAD 0.346 0.16 0.442 0.1 10 Click to see details
LIHC 0.16 0.18 0.153 0.19 34 Click to see details
HNSC -0.239 0.24 -0.227 0.25 11 Click to see details
KICH -0.213 0.26 -0.209 0.27 11 Click to see details
ESCA 0.586 0.3 0.500 0.33 3 Click to see details
PAAD -0.301 0.4 -0.500 0.33 3 Click to see details
KIRC 0.066 0.4 -0.032 0.45 16 Click to see details
KIRP -0.084 0.43 -0.286 0.27 7 Click to see details
LUSC 0.014 0.48 0.029 0.46 14 Click to see details
LUSC 0.014 0.48 0.029 0.46 14 Click to see details
LUSC 0.014 0.48 0.029 0.46 14 Click to see details
LUSC 0.014 0.48 0.029 0.46 14 Click to see details
LUSC 0.014 0.48 0.029 0.46 14 Click to see details
374 hsa-miR-548s Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075229 PHF13 PHD finger protein 13 2 4
MIRT090370 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT096411 C5ORF22 chromosome 5 open reading frame 22 2 2
MIRT153366 MAVS mitochondrial antiviral signaling protein 2 2
MIRT194890 DCTN5 dynactin subunit 5 2 8
MIRT195549 NIP7 NIP7, nucleolar pre-rRNA processing protein 2 2
MIRT219209 LYRM4 LYR motif containing 4 2 2
MIRT234472 ZNF652 zinc finger protein 652 2 2
MIRT235966 BACH1 BTB domain and CNC homolog 1 2 2
MIRT271874 ZNF678 zinc finger protein 678 2 2
MIRT294224 U2AF2 U2 small nuclear RNA auxiliary factor 2 2 2
MIRT334729 BTG2 BTG anti-proliferation factor 2 2 4
MIRT441397 SOX5 SRY-box 5 2 2
MIRT441551 TBCEL tubulin folding cofactor E like 2 2
MIRT441568 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT441581 POLR1B RNA polymerase I subunit B 2 2
MIRT441681 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit 2 2
MIRT442049 KLHDC10 kelch domain containing 10 2 2
MIRT442633 TBC1D12 TBC1 domain family member 12 2 2
MIRT442694 ZNF646 zinc finger protein 646 2 4
MIRT443108 DENND5B DENN domain containing 5B 2 2
MIRT443110 VLDLR very low density lipoprotein receptor 2 2
MIRT443423 MAPT microtubule associated protein tau 2 2
MIRT443464 ACPP acid phosphatase, prostate 2 2
MIRT443763 HLF HLF, PAR bZIP transcription factor 2 2
MIRT443806 SIDT2 SID1 transmembrane family member 2 2 2
MIRT451031 ZNF610 zinc finger protein 610 2 2
MIRT451275 ZNF101 zinc finger protein 101 2 6
MIRT451671 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 6
MIRT454144 FLYWCH2 FLYWCH family member 2 2 8
MIRT454595 MAG myelin associated glycoprotein 2 4
MIRT459352 AGXT alanine-glyoxylate aminotransferase 2 2
MIRT460053 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460737 HEXA hexosaminidase subunit alpha 2 2
MIRT463084 ZNF618 zinc finger protein 618 2 2
MIRT465757 TMPPE transmembrane protein with metallophosphoesterase domain 2 8
MIRT471102 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472939 MSMO1 methylsterol monooxygenase 1 2 6
MIRT473686 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT474288 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT476935 FAM83G family with sequence similarity 83 member G 2 2
MIRT477130 FAM118A family with sequence similarity 118 member A 2 2
MIRT477321 EPHA2 EPH receptor A2 2 2
MIRT478310 DDN dendrin 2 2
MIRT494936 IFFO2 intermediate filament family orphan 2 2 2
MIRT495287 RASL10B RAS like family 10 member B 2 2
MIRT495310 GDF11 growth differentiation factor 11 2 2
MIRT495323 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 4
MIRT496580 RGMA repulsive guidance molecule family member a 2 2
MIRT496647 TNPO2 transportin 2 2 2
MIRT496804 SLC16A10 solute carrier family 16 member 10 2 2
MIRT496850 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496910 RTKN rhotekin 2 2
MIRT496955 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT497149 PRDM15 PR/SET domain 15 2 2
MIRT498253 ELAVL1 ELAV like RNA binding protein 1 2 2
MIRT498380 GPRC5B G protein-coupled receptor class C group 5 member B 2 2
MIRT500426 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500482 ZBTB4 zinc finger and BTB domain containing 4 2 6
MIRT505372 TMEM154 transmembrane protein 154 2 4
MIRT505674 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT509787 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512344 ZNF665 zinc finger protein 665 2 4
MIRT512404 CD84 CD84 molecule 2 2
MIRT512526 ATCAY ATCAY, caytaxin 2 4
MIRT513223 RYK receptor-like tyrosine kinase 2 2
MIRT514247 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT514276 ZNF345 zinc finger protein 345 2 4
MIRT514426 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514551 PTGR2 prostaglandin reductase 2 2 2
MIRT514776 RBM4B RNA binding motif protein 4B 2 2
MIRT514854 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515033 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515265 CSNK1E casein kinase 1 epsilon 2 2
MIRT515283 MSRB1 methionine sulfoxide reductase B1 2 2
MIRT515587 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515898 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515945 C9orf156 tRNA methyltransferase O 2 2
MIRT516281 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516517 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516932 THAP1 THAP domain containing 1 2 4
MIRT517201 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517379 METTL7A methyltransferase like 7A 2 2
MIRT517467 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517564 SNX22 sorting nexin 22 2 2
MIRT517617 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT518210 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518545 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT519089 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519103 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519138 C2orf49 chromosome 2 open reading frame 49 2 2
MIRT519316 TIMELESS timeless circadian clock 2 2
MIRT519393 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519441 GLA galactosidase alpha 2 2
MIRT519465 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519705 ZNF584 zinc finger protein 584 2 4
MIRT519822 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT520236 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT520259 URGCP upregulator of cell proliferation 2 2
MIRT520409 TXNL1 thioredoxin like 1 2 4
MIRT521401 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521511 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522644 MANEAL mannosidase endo-alpha like 2 2
MIRT522789 KPNA4 karyopherin subunit alpha 4 2 4
MIRT523502 GMPS guanine monophosphate synthase 2 4
MIRT523686 FHL2 four and a half LIM domains 2 2 2
MIRT523902 EMC7 ER membrane protein complex subunit 7 2 4
MIRT524126 DMXL1 Dmx like 1 2 2
MIRT524770 BCKDK branched chain ketoacid dehydrogenase kinase 2 2
MIRT528264 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528675 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT529138 CLCC1 chloride channel CLIC like 1 2 4
MIRT530704 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT531620 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533399 TXNIP thioredoxin interacting protein 2 2
MIRT535650 NLN neurolysin 2 2
MIRT539958 SPRY1 sprouty RTK signaling antagonist 1 2 2
MIRT551760 MED21 mediator complex subunit 21 2 2
MIRT552021 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT557187 HOXA10 homeobox A10 2 2
MIRT560435 GOLGA7B golgin A7 family member B 2 2
MIRT561596 SKI SKI proto-oncogene 2 2
MIRT563915 STAT2 signal transducer and activator of transcription 2 2 2
MIRT565964 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT567313 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT572687 NCMAP non-compact myelin associated protein 2 2
MIRT574419 SOX4 SRY-box 4 2 2
MIRT575235 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576186 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576301 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576477 Lhx4 LIM homeobox protein 4 2 3
MIRT576576 Ptbp1 polypyrimidine tract binding protein 1 2 2
MIRT576602 Ccdc117 coiled-coil domain containing 117 2 2
MIRT576655 Fam216a family with sequence similarity 216, member A 2 2
MIRT576666 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT576703 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576845 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576944 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT608646 ABCF3 ATP binding cassette subfamily F member 3 2 2
MIRT609892 C1S complement C1s 2 2
MIRT613517 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614073 XRCC2 X-ray repair cross complementing 2 2 2
MIRT618202 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT618350 CDKL1 cyclin dependent kinase like 1 2 2
MIRT618619 GREB1 growth regulation by estrogen in breast cancer 1 2 4
MIRT618826 PHF20 PHD finger protein 20 2 2
MIRT619371 SYT2 synaptotagmin 2 2 2
MIRT620103 HARBI1 harbinger transposase derived 1 2 2
MIRT620220 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT621183 FAM153B family with sequence similarity 153 member B 2 2
MIRT621477 GPKOW G-patch domain and KOW motifs 2 2
MIRT621874 TAZ tafazzin 2 2
MIRT624054 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT624689 AR androgen receptor 2 2
MIRT625234 C6orf89 chromosome 6 open reading frame 89 2 2
MIRT626070 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629490 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT629861 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630995 ZNF573 zinc finger protein 573 2 2
MIRT631087 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631279 SGSM1 small G protein signaling modulator 1 2 2
MIRT631526 MYO6 myosin VI 2 2
MIRT631637 WDR91 WD repeat domain 91 2 4
MIRT632773 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633272 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633588 ABRACL ABRA C-terminal like 2 2
MIRT634152 YME1L1 YME1 like 1 ATPase 2 2
MIRT634920 CHMP1B charged multivesicular body protein 1B 2 2
MIRT635848 PRR11 proline rich 11 2 2
MIRT636006 SAMD15 sterile alpha motif domain containing 15 2 4
MIRT639203 RAD51 RAD51 recombinase 2 2
MIRT639378 FFAR4 free fatty acid receptor 4 2 2
MIRT639535 GSG2 histone H3 associated protein kinase 2 2
MIRT639635 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT640224 TOMM40 translocase of outer mitochondrial membrane 40 2 2
MIRT640297 PRR13 proline rich 13 2 2
MIRT640683 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641118 NPHP3 nephrocystin 3 2 2
MIRT641451 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT642306 FPR1 formyl peptide receptor 1 2 2
MIRT642712 ZNF273 zinc finger protein 273 2 2
MIRT642840 ZNF891 zinc finger protein 891 2 2
MIRT643694 KIAA0586 KIAA0586 2 2
MIRT644309 NFKBID NFKB inhibitor delta 2 2
MIRT644504 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT645171 NOL9 nucleolar protein 9 2 4
MIRT645728 POLR3A RNA polymerase III subunit A 2 2
MIRT646120 SLC26A9 solute carrier family 26 member 9 2 2
MIRT647725 CXCR2 C-X-C motif chemokine receptor 2 2 2
MIRT647991 PDE12 phosphodiesterase 12 2 2
MIRT648053 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648172 TMEM192 transmembrane protein 192 2 2
MIRT648789 VPS8 VPS8, CORVET complex subunit 2 2
MIRT649285 NEK8 NIMA related kinase 8 2 2
MIRT649837 LIPG lipase G, endothelial type 2 2
MIRT650004 KLB klotho beta 2 2
MIRT650563 YIPF4 Yip1 domain family member 4 2 2
MIRT651782 UTP6 UTP6, small subunit processome component 2 2
MIRT652076 TSPAN14 tetraspanin 14 2 2
MIRT653397 SLCO5A1 solute carrier organic anion transporter family member 5A1 2 2
MIRT654540 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT655362 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT655386 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT657139 ITGA1 integrin subunit alpha 1 2 2
MIRT657754 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT658821 EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 2 2
MIRT659082 DENR density regulated re-initiation and release factor 2 2
MIRT659106 DENND6A DENN domain containing 6A 2 2
MIRT659409 CORO2A coronin 2A 2 2
MIRT659829 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT660252 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT660260 BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 2 4
MIRT660933 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662986 TMEM59 transmembrane protein 59 2 2
MIRT663064 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663256 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663583 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT663755 ZNF285 zinc finger protein 285 2 2
MIRT664135 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT665143 PTK6 protein tyrosine kinase 6 2 2
MIRT665394 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665978 SYT11 synaptotagmin 11 2 2
MIRT666186 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666568 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT666772 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667018 PDF peptide deformylase, mitochondrial 2 2
MIRT667098 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667134 NT5DC3 5'-nucleotidase domain containing 3 2 4
MIRT669790 GAN gigaxonin 2 2
MIRT669920 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT669998 GPR156 G protein-coupled receptor 156 2 4
MIRT670291 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670380 EMP2 epithelial membrane protein 2 2 2
MIRT670453 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670564 GLTP glycolipid transfer protein 2 2
MIRT670859 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671055 KIF1B kinesin family member 1B 2 2
MIRT671078 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT671299 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671801 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT671851 APOL2 apolipoprotein L2 2 2
MIRT671950 SPPL3 signal peptide peptidase like 3 2 2
MIRT671990 OSTF1 osteoclast stimulating factor 1 2 2
MIRT672163 FANCF Fanconi anemia complementation group F 2 2
MIRT672267 SHE Src homology 2 domain containing E 2 2
MIRT672444 TTPAL alpha tocopherol transfer protein like 2 2
MIRT672870 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT673643 CYCS cytochrome c, somatic 2 4
MIRT674049 ATXN3 ataxin 3 2 2
MIRT674240 NUP62 nucleoporin 62 2 2
MIRT674276 LMOD3 leiomodin 3 2 2
MIRT674430 MIOX myo-inositol oxygenase 2 4
MIRT674473 BCL2L15 BCL2 like 15 2 2
MIRT674493 TIRAP TIR domain containing adaptor protein 2 2
MIRT674846 GINM1 glycoprotein integral membrane 1 2 2
MIRT675706 EMC3 ER membrane protein complex subunit 3 2 2
MIRT675972 FAM126B family with sequence similarity 126 member B 2 2
MIRT676235 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676737 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT677426 DDX19B DEAD-box helicase 19B 2 2
MIRT677454 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677576 TRIM65 tripartite motif containing 65 2 2
MIRT677639 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677827 TSPYL1 TSPY like 1 2 2
MIRT678937 MYADM myeloid associated differentiation marker 2 2
MIRT680405 SFT2D2 SFT2 domain containing 2 2 2
MIRT680475 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT683260 ZNF329 zinc finger protein 329 2 2
MIRT683564 CARD8 caspase recruitment domain family member 8 2 2
MIRT683812 CBS cystathionine-beta-synthase 2 2
MIRT684532 ZNF460 zinc finger protein 460 2 2
MIRT684939 PLA2G16 phospholipase A2 group XVI 2 2
MIRT685127 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT685164 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685429 PM20D2 peptidase M20 domain containing 2 2 2
MIRT685437 SLC10A6 solute carrier family 10 member 6 2 2
MIRT685676 TRIM45 tripartite motif containing 45 2 2
MIRT685991 NEK4 NIMA related kinase 4 2 2
MIRT687311 OTUD7B OTU deubiquitinase 7B 2 2
MIRT687535 MOB1B MOB kinase activator 1B 2 2
MIRT687710 KLF2 Kruppel like factor 2 2 2
MIRT687902 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT688044 GLUL glutamate-ammonia ligase 2 2
MIRT688891 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT689242 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT689519 ORC6 origin recognition complex subunit 6 2 2
MIRT689582 NUDT7 nudix hydrolase 7 2 2
MIRT689611 AKAP6 A-kinase anchoring protein 6 2 2
MIRT689665 RBM23 RNA binding motif protein 23 2 2
MIRT689911 ACOT13 acyl-CoA thioesterase 13 2 2
MIRT690005 LUZP2 leucine zipper protein 2 2 2
MIRT690027 CCDC90B coiled-coil domain containing 90B 2 2
MIRT690309 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690503 MDM2 MDM2 proto-oncogene 2 2
MIRT691056 CRCP CGRP receptor component 2 2
MIRT691441 CXorf36 chromosome X open reading frame 36 2 2
MIRT691918 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692269 GPR157 G protein-coupled receptor 157 2 2
MIRT692631 SUSD1 sushi domain containing 1 2 2
MIRT693378 ZNF528 zinc finger protein 528 2 2
MIRT693858 IYD iodotyrosine deiodinase 2 2
MIRT693971 ZNF70 zinc finger protein 70 2 2
MIRT694137 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT694288 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT694608 CXorf56 chromosome X open reading frame 56 2 2
MIRT694988 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695160 TCTN2 tectonic family member 2 2 2
MIRT695359 PHAX phosphorylated adaptor for RNA export 2 2
MIRT695538 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695884 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696015 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696052 ZNF264 zinc finger protein 264 2 2
MIRT696119 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696154 SLC11A2 solute carrier family 11 member 2 2 2
MIRT696158 TIPIN TIMELESS interacting protein 2 2
MIRT696295 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT696394 CORO7 coronin 7 2 2
MIRT696675 APOC3 apolipoprotein C3 2 2
MIRT696696 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT696742 RBM28 RNA binding motif protein 28 2 2
MIRT696842 WDR13 WD repeat domain 13 2 2
MIRT697179 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT697876 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT698134 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT698352 TMEM127 transmembrane protein 127 2 2
MIRT698698 TBC1D15 TBC1 domain family member 15 2 2
MIRT698824 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT699111 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699657 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT699845 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT699954 RSBN1 round spermatid basic protein 1 2 2
MIRT700447 PURB purine rich element binding protein B 2 2
MIRT700887 PER2 period circadian clock 2 2 2
MIRT700906 PDXK pyridoxal kinase 2 2
MIRT701001 PCSK6 proprotein convertase subtilisin/kexin type 6 2 2
MIRT701082 PAPOLG poly(A) polymerase gamma 2 2
MIRT701138 PANK1 pantothenate kinase 1 2 2
MIRT701204 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT701374 NOA1 nitric oxide associated 1 2 2
MIRT701627 MYO10 myosin X 2 2
MIRT701847 MRO maestro 2 2
MIRT702074 PCDHB11 protocadherin beta 11 2 2
MIRT702265 LHX4 LIM homeobox 4 2 3
MIRT702350 KLHL26 kelch like family member 26 2 2
MIRT702417 KIF5B kinesin family member 5B 2 2
MIRT702553 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT702769 IFNLR1 interferon lambda receptor 1 2 2
MIRT703300 GGCX gamma-glutamyl carboxylase 2 2
MIRT703408 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703467 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT703549 FKBP14 FK506 binding protein 14 2 2
MIRT703953 ENAH ENAH, actin regulator 2 2
MIRT703969 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704307 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704455 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT705028 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705113 C4orf29 abhydrolase domain containing 18 2 2
MIRT705837 AHCY adenosylhomocysteinase 2 2
MIRT708432 CPM carboxypeptidase M 2 2
MIRT710340 ZNF669 zinc finger protein 669 2 2
MIRT710828 PLEKHO2 pleckstrin homology domain containing O2 2 2
MIRT712615 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT714275 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT718942 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT719748 RRP8 ribosomal RNA processing 8 2 2
MIRT720035 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT720432 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT720632 SPA17 sperm autoantigenic protein 17 2 2
MIRT720728 ELOVL7 ELOVL fatty acid elongase 7 2 2
MIRT722882 MOB3A MOB kinase activator 3A 2 2
MIRT723045 YTHDC1 YTH domain containing 1 2 2
MIRT723441 NDUFAF3 NADH:ubiquinone oxidoreductase complex assembly factor 3 2 2
MIRT724404 WWC1 WW and C2 domain containing 1 2 2
MIRT725459 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548s Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-548s Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-548s Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548s Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548s Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-548s Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-548s Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548s Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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