pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol COX15   
Synonyms CEMCOX2
Description COX15, cytochrome c oxidase assembly homolog
Transcript NM_078470   
Other Transcripts NM_004376   
Expression
Putative miRNA Targets on COX15
3'UTR of COX15
(miRNA target sites are highlighted)
>COX15|NM_078470|3'UTR
   1 TTCTTAGAGGACCAGCCTCCTGGGACTGTGACTGCTTTTGAGAGCTCTTCAGAGATCATAAGAACTTGGGCTTTTCTACG
  81 AGATGACCTTGACATACCAAGTGGTTTCCAAATGGTCAACTTACTTAAAAATCTTTTCCTGTTTTGAGATAGTCACTGGA
 161 TCAAGAATGCATTAAGTGTGGTTACCCTAAATGTTCCCTTTTAAATCTGCTTTTCATGTTGAAAATCAGTTTTAATGTAG
 241 AGAAAGAAATGTCTGCCATTTGCTGCTTAACAGGCTTTGTGTCAGGTTTTTCAGTGTTGGCAAGCTCTTGGTTCTACGTG
 321 GATGATTTCTACGTGGATGTTCTCCTGAGTCCTTAATTCTGCCTAAATAGAATTTCTTTATGATCTTAACTTCACTTCCA
 401 TTAGGTGAAGATTGAAAGGATAGGATTGACATACCCAAAGTAGCCAGCTGGTCTTCAGCAAAAAAAAAAAAGCTAATGTC
 481 TTCTAATATCCTGATTTTCAGAAATGGGGAAATTGCAGATTTTGACAAGCTTAATGTGTATATGTAGCAAAATGGTTTTT
 561 AAGTACTTGGAAAAGGAGGTAATCGCCAAATAGTTCCATTTTTTTTTTTTTTTTTGAGACAGAGTTTCACTCTTGTTGCC
 641 CAGGCTGGAGTACAATGGCGTGATCTCAGCTCACTCTGCAACCTCCACTTCCCAGGTTCAAGCGATTCTCATGCCTCAGC
 721 CTCCCGAGTAGCTGGGACTACAGGCACAAGTCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGAAGGGGTTTCACCA
 801 CATTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGTAATCCGCCCATCTCGGCTTCCCAAAGTGCTGAGATTACAGGCA
 881 TGGGCCACCACGCCCAGCTAGTTCCTCTTTTGATAAGGCTGTTAACATTACAAGGTCAGAGAGAGGAATGGAATCGACAG
 961 TATAAATTGGTTCCTGAGAGGGTTTCCTAACAGCTTTGTAATAAGAAAAATATGGCCTTGATGGTGTAGTGCATGGACAT
1041 CTACCCAGATAAACAAATTGTTGACTGCTGAATTAATGTGATTTTGGTCTCTATTGATATTTCATAGGGCCCTGTCTTAT
1121 TCAACTTTACTTTTAAAATCAGTGATTTGGATGAAGGCATCAGAAACATCTGATTTGAGGATGGAGCAACCCAATATTGC
1201 TAATATAATAGATGACAGTGGCAACTGAAAACAGTCCCAGAATGACCCCATCGAGATGAAATTAAACAGATTAGAAATGT
1281 AACATACTCATTTAAATTAAATAAGTTGTATAAGTTTGGGCTGAAGAAACCTGGCCTTATATCATTTCATATAAAAAAGA
1361 CGGGATTTTAGTTGTCCTCAGGTTCAATATGAACCAAGTAGTATTCATGTTGTTATTATATGATAACAGAAAAATTAGTG
1441 GTACTTCAGGTTTTATCAGTAGAAGTGTCACAGCCATAGTCAAAATACCCCTAACATACTGCATTTCACTCTGGGTACCA
1521 AATTTAAGCAAGATATTGATGGCCACTAAGTGTGTATCCAGAAGAAGAGATCAGAATGATGAGTCCAGAACCCCTGTCAC
1601 ACAGGGAATAGGTGAAGGAACTAGGGATATTTAACTGGAGCAGAGAACATCTGGAGAGAGAGCAAGATTCCTGTCCTTGA
1681 GAAGTTGAAGCCGTCTCATGCAGAAGAGGGAATGAGCTTCCATTATGCTGCAGAGCTGGCAGCAATGGATGAAAGTTGCA
1761 GGAAGTTAGTTTTAGTTCTGTAGAAGGCAAGAGTAGGGTAGACCAAATCAAATGCTCACTGGGGTCAGGCTGATGGAGAC
1841 AGTAACACTGGCGAGCAGGTGCCCCAGCTCGGACTATACTGCTGAGTTCTGGTCTGTTGCTGCCACTCTACAGGTCCAGG
1921 GTTGTTAGATCTTCTGGGTTTTTGTTTTGCTTTTTGAAATAAGGAAAATAAGCTTATCTTAAGTTTATTTTTCCTTGGAT
2001 ATACCTAGATTCCATACAGTGACAATACAAATACAAAGGAAGAACATCTGGATTTCATCCTTGACCTCATTTACAAAGCA
2081 AAAAGAGATGCTGGATTCAGATATAAATGTTTAATTTTGCAGTGTTTAAGTCAGCAAATCTTCTGTTTTTTAAAAATAAG
2161 CCACATATCTAGATTTTTCTGTGAAAGCTCTCAATTAAGTGTTGGGAACTAATTTCAAGATTTTAAAAAATGTTATGCAG
2241 GCTTAACGTGTCTGAGAGCCATAAATGACCTAACGTTTCCCGTTAGTCTCTGAACTAGGTGATCTCAGTTCTCTTTCAAC
2321 TCCAGTACTCTGTAAGTTTCTGTGACCTGTAGTGTACCATTCTCAGGTGGTGATATGGTTTGGATGTTTTGTCCCCTCCA
2401 AATCTCATGTTCAAAGTGTGACATTCAGTGTTAGAGGTGGGCCTAGTAGGAGGTATTTGGGTCATGGGGGCGGATCCCTT
2481 ATGTATGACTTTGTGCCATCCCCATAGTAATGAGTGAGTTCTCACTCTGGTTGTTTATGCAAGAGCTGGTTGTTTAAAAG
2561 AGCCTGGAACTTCCTCCTCTCTCGCTTGCTCTCTCTCACCATGTGACACACTGGCTCCCCTTCACCTTCTGCCATGATTG
2641 TAAGCTTCGTGAGGCCCTCACCAGAAGCAGATGCCAGCGCCATGCTTCCTATACAGTTCTATGCAGAACAGTGAGCCAAA
2721 TAAACCTCTTTTCTTTCTAAAAATTGTCAGTATTTCCTTATAGCAATGCAAGCCGACTAACACAGGTGATTCTTAGCAAA
2801 ACAGTTTGTCAATTTTTCATAAATGCTGGACCCTGGCTGGGCTTATGCTATTGCCTAGAAGAGATTCCCAACTTCTCTCT
2881 TATTTGAATCTTAGAAAAATCCCAAAGCCCAAGCCTCATCTAAGACCAATTAAGTCACAATCCCTGGAGGAAGTAAAAGG
2961 CATATTTTTAAAGTTCCCCAGGTGATTCCAATGTGCAGACAAGTCTAGGGACCACTGGCTTAGGTCCTAATAGCCTAGTT
3041 ACCTTAGAAAGTTCTGACTAGCTTATTCCCATTCCCTTCTAATTTCCACCCCACCTTATCATTTGATCTGCTATGTTGCT
3121 CCTATTAGTATGTTAGTAGGATATGGTCTCTTCTGGATAGAATCCTTCAAAGAAAGGGAACTGTAGTTCCTGAGGCAGGT
3201 TCCCACACCATCCTCTCCTGATCCTCAAACCCAGGTTGTCCTTAGTTAGTAACTGAGTCAGCAGAGGGCAGTATGACCCA
3281 ACCCAAAGAACCATATATTAATGCTTCTACAGTTGCCTCCAAGGAAGTAGCAACTCATGAGTAAGTTAAGGTTTCAGATG
3361 TTTTACTTCATTTTTCTTTTATTACAGATGATGAGTACATTTGGAAAAACAACTGGTTGCATTTAGCTATATAACTGTAT
3441 TATATCTATGAGCTTCTGGTGAATGATTATCTTAGGGTTTTTTTTGTATTTATGTTATTCCCAGCACTCCCAGACACATA
3521 TCAAATATTGAATTAGTGAATGCATGAATGGAAAATGGATAATTACAGATTGATGTTCCAAATACCTTTTTCCAAAAAAA
3601 CAAGTCATCACATACCTATAGGATTAAATAGATTTCCCTTAATATTTTCAAAGGTCTCTCTGCACTTACGTCCATTGTTT
3681 TTAAAACATGAAGGAAATTAAAACACATGGCTTTCTTAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auUUCAUUGAAG----GUGAACCga 5'
            || |:::||:    :||||||  
Target 5' caAAATGGTTTTTAAGTACTTGGaa 3'
548 - 572 133.00 -9.60
2
miRNA  3' auUUCAUUGAA--GGUG-AACCGa 5'
            ||| :::||  |||| ||||| 
Target 5' agAAGGGGTTTCACCACATTGGCc 3'
785 - 808 133.00 -14.00
3
miRNA  3' auUUCAUUGAA---GGUGAACCGa 5'
            ||| || ||    ||| |||| 
Target 5' tgAAGGAAATTAAAACACATGGCt 3'
3689 - 3712 127.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
1201693 316 ClinVar
683434 809 ClinVar
298412 1122 ClinVar
128836 1126 ClinVar
298411 1197 ClinVar
878697 1242 ClinVar
298410 1309 ClinVar
878696 1349 ClinVar
298409 1361 ClinVar
878695 1362 ClinVar
298408 1431 ClinVar
298407 1474 ClinVar
878694 1590 ClinVar
878693 1591 ClinVar
298406 1594 ClinVar
298405 1693 ClinVar
298404 1716 ClinVar
298403 1776 ClinVar
298402 1793 ClinVar
298401 1850 ClinVar
298400 1851 ClinVar
877675 1876 ClinVar
880433 1957 ClinVar
298399 2060 ClinVar
880432 2167 ClinVar
298398 2193 ClinVar
298397 2282 ClinVar
880430 2301 ClinVar
880431 2301 ClinVar
298396 2459 ClinVar
298395 2490 ClinVar
879245 2594 ClinVar
879244 2595 ClinVar
879243 2620 ClinVar
298394 2649 ClinVar
298393 2668 ClinVar
298392 2701 ClinVar
879242 2745 ClinVar
298391 2756 ClinVar
878646 2839 ClinVar
878645 2850 ClinVar
298390 2857 ClinVar
298389 2898 ClinVar
878644 2959 ClinVar
298388 3247 ClinVar
878643 3362 ClinVar
298387 3417 ClinVar
298385 3486 ClinVar
298386 3486 ClinVar
877634 3638 ClinVar
298384 3670 ClinVar
COSN30125739 20 COSMIC
COSN19663253 23 COSMIC
COSN30136823 49 COSMIC
COSN30516072 91 COSMIC
COSN30543328 159 COSMIC
COSN31600078 165 COSMIC
COSN28986113 460 COSMIC
COSN1110964 492 COSMIC
COSN16866308 725 COSMIC
COSN31960532 956 COSMIC
COSN30536289 1009 COSMIC
COSN31603962 1015 COSMIC
COSN30454146 1048 COSMIC
COSN28750055 1061 COSMIC
COSM7526718 1155 COSMIC
COSM8169390 1165 COSMIC
COSN30145575 1177 COSMIC
COSN31614107 1205 COSMIC
COSN30180246 1210 COSMIC
COSN28424356 1215 COSMIC
COSN30477471 1220 COSMIC
COSN18734770 1253 COSMIC
COSN31580669 1269 COSMIC
COSN17182226 1280 COSMIC
COSN30501159 1288 COSMIC
COSN30543881 1335 COSMIC
COSN30497407 1357 COSMIC
COSN30497120 1405 COSMIC
COSN27954778 2555 COSMIC
COSN26615992 2610 COSMIC
COSN1466483 2736 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs774848108 4 dbSNP
rs533184828 7 dbSNP
rs893167777 10 dbSNP
rs1422741626 12 dbSNP
rs769129948 13 dbSNP
rs187834743 21 dbSNP
rs1031629521 24 dbSNP
rs368724833 26 dbSNP
rs1418309809 27 dbSNP
rs1423671888 28 dbSNP
rs1406018110 31 dbSNP
rs779894822 31 dbSNP
rs998930038 40 dbSNP
rs1162945397 44 dbSNP
rs775826954 46 dbSNP
rs770105479 47 dbSNP
rs756347746 54 dbSNP
rs1295319182 58 dbSNP
rs1347356956 72 dbSNP
rs577370211 74 dbSNP
rs1477289235 78 dbSNP
rs1277399311 79 dbSNP
rs1277384449 80 dbSNP
rs1198258555 94 dbSNP
rs1216037302 96 dbSNP
rs1287317937 104 dbSNP
rs1051576333 108 dbSNP
rs1320690602 109 dbSNP
rs1221699409 110 dbSNP
rs1266660854 118 dbSNP
rs552769230 119 dbSNP
rs1260777005 124 dbSNP
rs1241554473 128 dbSNP
rs1376803045 130 dbSNP
rs932518024 132 dbSNP
rs899633120 134 dbSNP
rs1454860850 136 dbSNP
rs1038322425 137 dbSNP
rs913415402 138 dbSNP
rs989350767 144 dbSNP
rs540891515 148 dbSNP
rs1413378747 152 dbSNP
rs573862490 168 dbSNP
rs941242672 175 dbSNP
rs750637877 178 dbSNP
rs183099521 187 dbSNP
rs1341330300 188 dbSNP
rs1406133791 191 dbSNP
rs957648457 195 dbSNP
rs1333696956 205 dbSNP
rs1417850369 213 dbSNP
rs1297504859 215 dbSNP
rs1340986517 216 dbSNP
rs982437774 237 dbSNP
rs1394489887 240 dbSNP
rs938982807 245 dbSNP
rs1432663869 246 dbSNP
rs1282171671 247 dbSNP
rs767534714 254 dbSNP
rs112354052 257 dbSNP
rs1419087202 269 dbSNP
rs996429493 271 dbSNP
rs191301593 275 dbSNP
rs1287385209 281 dbSNP
rs1018877322 285 dbSNP
rs1237236366 286 dbSNP
rs556480730 294 dbSNP
rs377068774 296 dbSNP
rs564417512 302 dbSNP
rs1378621661 308 dbSNP
rs1439176916 314 dbSNP
rs115979585 316 dbSNP
rs796678570 317 dbSNP
rs188062046 318 dbSNP
rs1358346765 322 dbSNP
rs994444450 332 dbSNP
rs117493763 333 dbSNP
rs1374129279 334 dbSNP
rs776219862 336 dbSNP
rs1038723654 337 dbSNP
rs937257506 342 dbSNP
rs763489824 345 dbSNP
rs1045399044 346 dbSNP
rs1278434226 347 dbSNP
rs748620970 361 dbSNP
rs1205901010 367 dbSNP
rs535269284 374 dbSNP
rs949789721 379 dbSNP
rs912947764 385 dbSNP
rs1179378222 393 dbSNP
rs1382220624 394 dbSNP
rs1471152240 396 dbSNP
rs770567516 399 dbSNP
rs891095090 401 dbSNP
rs11190254 404 dbSNP
rs1029758302 407 dbSNP
rs1353638783 412 dbSNP
rs544383972 414 dbSNP
rs1284419600 417 dbSNP
rs549459347 418 dbSNP
rs997324000 422 dbSNP
rs530484825 426 dbSNP
rs899686266 431 dbSNP
rs1283943639 433 dbSNP
rs113350367 435 dbSNP
rs1231794744 438 dbSNP
rs1038210154 443 dbSNP
rs926122958 448 dbSNP
rs1346264759 449 dbSNP
rs1242973639 455 dbSNP
rs1328415518 456 dbSNP
rs1298901182 458 dbSNP
rs1399413868 459 dbSNP
rs1358587000 464 dbSNP
rs941295040 469 dbSNP
rs1317566623 472 dbSNP
rs765618742 472 dbSNP
rs964902736 472 dbSNP
rs1018906661 478 dbSNP
rs368877701 493 dbSNP
rs375534906 493 dbSNP
rs1178375089 501 dbSNP
rs887033287 503 dbSNP
rs182550670 505 dbSNP
rs1161236537 510 dbSNP
rs551033116 513 dbSNP
rs939049806 515 dbSNP
rs532879210 528 dbSNP
rs1384585850 535 dbSNP
rs577264951 536 dbSNP
rs1332216232 543 dbSNP
rs1407269711 544 dbSNP
rs1044850163 545 dbSNP
rs1373229175 553 dbSNP
rs1276760193 563 dbSNP
rs1340293338 572 dbSNP
rs947777473 578 dbSNP
rs1219557580 584 dbSNP
rs191560618 585 dbSNP
rs1354447862 591 dbSNP
rs1486994502 596 dbSNP
rs1270387680 597 dbSNP
rs1225421724 598 dbSNP
rs1490507472 599 dbSNP
rs1452689597 602 dbSNP
rs796939018 611 dbSNP
rs1201490854 615 dbSNP
rs1162177513 616 dbSNP
rs1260849244 616 dbSNP
rs1480769822 616 dbSNP
rs397940591 616 dbSNP
rs879104248 616 dbSNP
rs1390804091 617 dbSNP
rs1289690286 619 dbSNP
rs1296891486 622 dbSNP
rs1340390240 624 dbSNP
rs1226908288 626 dbSNP
rs1341746544 627 dbSNP
rs1298134912 628 dbSNP
rs1401013654 628 dbSNP
rs1279035386 631 dbSNP
rs1338968002 632 dbSNP
rs1244308220 635 dbSNP
rs1284915770 640 dbSNP
rs1361681161 648 dbSNP
rs994920269 652 dbSNP
rs1283818762 654 dbSNP
rs990284699 655 dbSNP
rs898348107 657 dbSNP
rs1338578256 662 dbSNP
rs957495620 669 dbSNP
rs924884270 681 dbSNP
rs1421744314 686 dbSNP
rs1285234939 687 dbSNP
rs1437185889 691 dbSNP
rs770184980 699 dbSNP
rs1349214428 703 dbSNP
rs746879138 704 dbSNP
rs1321355093 709 dbSNP
rs1001873759 711 dbSNP
rs955428994 717 dbSNP
rs1400615067 725 dbSNP
rs1030056771 736 dbSNP
rs1395736645 737 dbSNP
rs540803712 738 dbSNP
rs1476618562 753 dbSNP
rs1385192988 754 dbSNP
rs996982285 760 dbSNP
rs11190253 764 dbSNP
rs1352955658 779 dbSNP
rs1239657797 786 dbSNP
rs527637185 789 dbSNP
rs1262335330 802 dbSNP
rs1191257145 808 dbSNP
rs7073616 809 dbSNP
rs1199606408 819 dbSNP
rs1243397735 824 dbSNP
rs949739454 828 dbSNP
rs1176285581 832 dbSNP
rs772944700 835 dbSNP
rs1420266090 836 dbSNP
rs186268155 842 dbSNP
rs879807462 843 dbSNP
rs1376364290 845 dbSNP
rs886918446 851 dbSNP
rs1337748672 855 dbSNP
rs1259079526 867 dbSNP
rs1198293213 873 dbSNP
rs1444806166 884 dbSNP
rs543364106 885 dbSNP
rs1003858948 888 dbSNP
rs183112534 891 dbSNP
rs1310316844 892 dbSNP
rs1219825931 897 dbSNP
rs533269655 898 dbSNP
rs1045117957 899 dbSNP
rs748016439 901 dbSNP
rs947711103 908 dbSNP
rs914994825 931 dbSNP
rs1053444621 936 dbSNP
rs1325307964 938 dbSNP
rs936183204 940 dbSNP
rs924766757 942 dbSNP
rs557414294 955 dbSNP
rs190507435 959 dbSNP
rs1178375681 988 dbSNP
rs578133881 1001 dbSNP
rs1330422038 1005 dbSNP
rs1463788781 1011 dbSNP
rs1407774476 1035 dbSNP
rs912182941 1040 dbSNP
rs1170239086 1041 dbSNP
rs922663595 1042 dbSNP
rs975828980 1044 dbSNP
rs987672655 1046 dbSNP
rs950745940 1052 dbSNP
rs1413372201 1053 dbSNP
rs1291816695 1056 dbSNP
rs1365452525 1056 dbSNP
rs745984532 1061 dbSNP
rs1220898219 1065 dbSNP
rs781078683 1066 dbSNP
rs1404235846 1067 dbSNP
rs1026297638 1086 dbSNP
rs1266559076 1089 dbSNP
rs1238718591 1091 dbSNP
rs376504979 1093 dbSNP
rs777588996 1094 dbSNP
rs879273942 1096 dbSNP
rs758154482 1104 dbSNP
rs373426498 1105 dbSNP
rs1206052083 1106 dbSNP
rs764891474 1106 dbSNP
rs754528085 1111 dbSNP
rs368386864 1112 dbSNP
rs1200773961 1114 dbSNP
rs1294072515 1118 dbSNP
rs1452740270 1120 dbSNP
rs142892403 1122 dbSNP
rs1477052318 1123 dbSNP
rs2231687 1126 dbSNP
rs764593739 1127 dbSNP
rs1420531846 1139 dbSNP
rs760647511 1139 dbSNP
rs377239224 1149 dbSNP
rs1162827735 1152 dbSNP
rs1435005100 1156 dbSNP
rs186460666 1158 dbSNP
rs1349359181 1159 dbSNP
rs1268620585 1161 dbSNP
rs146008497 1166 dbSNP
rs1303694614 1167 dbSNP
rs770156735 1170 dbSNP
rs776825933 1175 dbSNP
rs770889501 1176 dbSNP
rs1329348691 1179 dbSNP
rs1269338829 1180 dbSNP
rs1282265040 1181 dbSNP
rs1230381847 1186 dbSNP
rs747005189 1191 dbSNP
rs149696723 1197 dbSNP
rs758281199 1198 dbSNP
rs747947854 1201 dbSNP
rs1322226826 1203 dbSNP
rs778611852 1209 dbSNP
rs375177450 1210 dbSNP
rs202111313 1212 dbSNP
rs372034566 1219 dbSNP
rs1003502153 1229 dbSNP
rs1243031921 1231 dbSNP
rs1276552467 1236 dbSNP
rs891485696 1239 dbSNP
rs906449340 1243 dbSNP
rs549605625 1252 dbSNP
rs904230733 1258 dbSNP
rs1165499636 1267 dbSNP
rs1012343886 1273 dbSNP
rs893444127 1278 dbSNP
rs1039189422 1280 dbSNP
rs537366039 1284 dbSNP
rs912046815 1286 dbSNP
rs987708429 1287 dbSNP
rs935061479 1288 dbSNP
rs1384587653 1296 dbSNP
rs556850599 1309 dbSNP
rs558512012 1313 dbSNP
rs919266489 1319 dbSNP
rs1356966493 1321 dbSNP
rs973397513 1324 dbSNP
rs760631047 1330 dbSNP
rs550945375 1335 dbSNP
rs532790726 1348 dbSNP
rs779762294 1349 dbSNP
rs755907089 1355 dbSNP
rs1223702047 1359 dbSNP
rs886046610 1361 dbSNP
rs750145039 1362 dbSNP
rs1208388768 1363 dbSNP
rs1237142262 1379 dbSNP
rs139851090 1382 dbSNP
rs1185545590 1403 dbSNP
rs1236413244 1404 dbSNP
rs1437819966 1409 dbSNP
rs1438178666 1415 dbSNP
rs547128653 1427 dbSNP
rs886046609 1431 dbSNP
rs942691713 1433 dbSNP
rs1402252054 1444 dbSNP
rs909871987 1451 dbSNP
rs1014192186 1455 dbSNP
rs1338199441 1457 dbSNP
rs955949055 1471 dbSNP
rs886046608 1474 dbSNP
rs1031755895 1476 dbSNP
rs1182703183 1487 dbSNP
rs781589361 1493 dbSNP
rs1262879858 1510 dbSNP
rs999901316 1510 dbSNP
rs1235864143 1519 dbSNP
rs1218812087 1525 dbSNP
rs529046851 1535 dbSNP
rs984229270 1536 dbSNP
rs1182552878 1546 dbSNP
rs1233414326 1560 dbSNP
rs904177546 1565 dbSNP
rs951441830 1568 dbSNP
rs757498127 1570 dbSNP
rs1189300619 1572 dbSNP
rs1428320420 1589 dbSNP
rs181768654 1590 dbSNP
rs190369277 1591 dbSNP
rs1397605252 1592 dbSNP
rs886046607 1594 dbSNP
rs1313116253 1596 dbSNP
rs576276908 1600 dbSNP
rs1338092422 1604 dbSNP
rs1376498303 1608 dbSNP
rs1283113989 1609 dbSNP
rs1346542200 1609 dbSNP
rs1012149988 1611 dbSNP
rs1225666084 1611 dbSNP
rs1290128507 1611 dbSNP
rs564407801 1612 dbSNP
rs1338933785 1619 dbSNP
rs1361768768 1626 dbSNP
rs1298071841 1644 dbSNP
rs1275177448 1646 dbSNP
rs1031964537 1654 dbSNP
rs999263210 1660 dbSNP
rs1268012348 1663 dbSNP
rs902280818 1665 dbSNP
rs1051485992 1668 dbSNP
rs919479972 1668 dbSNP
rs942076867 1672 dbSNP
rs1370628848 1679 dbSNP
rs1165913463 1686 dbSNP
rs934173786 1692 dbSNP
rs74981084 1693 dbSNP
rs1366676950 1699 dbSNP
rs1195976090 1703 dbSNP
rs1276661770 1706 dbSNP
rs1326121153 1710 dbSNP
rs1478163175 1711 dbSNP
rs186244558 1716 dbSNP
rs970772248 1726 dbSNP
rs1275418685 1740 dbSNP
rs917095645 1741 dbSNP
rs1290974965 1746 dbSNP
rs992621124 1758 dbSNP
rs546058308 1764 dbSNP
rs956062339 1769 dbSNP
rs1259376274 1773 dbSNP
rs145963002 1776 dbSNP
rs1489418524 1778 dbSNP
rs541168918 1786 dbSNP
rs574149332 1793 dbSNP
rs909924190 1796 dbSNP
rs763616218 1797 dbSNP
rs1427084410 1798 dbSNP
rs1296796514 1799 dbSNP
rs984114304 1803 dbSNP
rs753229745 1816 dbSNP
rs1319556031 1818 dbSNP
rs1279651795 1841 dbSNP
rs1245379637 1848 dbSNP
rs755134012 1850 dbSNP
rs754063121 1851 dbSNP
rs180797406 1852 dbSNP
rs555696632 1853 dbSNP
rs990733556 1858 dbSNP
rs756238457 1861 dbSNP
rs537685660 1868 dbSNP
rs957940064 1870 dbSNP
rs1205448735 1871 dbSNP
rs115287270 1876 dbSNP
rs1459673542 1879 dbSNP
rs1182497031 1886 dbSNP
rs993720053 1904 dbSNP
rs999151068 1905 dbSNP
rs902155191 1908 dbSNP
rs942259017 1913 dbSNP
rs905204275 1917 dbSNP
rs1160617451 1921 dbSNP
rs750869228 1923 dbSNP
rs1045052689 1931 dbSNP
rs1457687053 1933 dbSNP
rs1030509968 1952 dbSNP
rs997262715 1958 dbSNP
rs1385083663 1966 dbSNP
rs1444576233 1973 dbSNP
rs1173158903 1977 dbSNP
rs901361847 1980 dbSNP
rs1239549441 1981 dbSNP
rs577407869 1981 dbSNP
rs1321040835 1982 dbSNP
rs1202634100 1983 dbSNP
rs1263303382 1983 dbSNP
rs1462278212 1987 dbSNP
rs1174923407 1990 dbSNP
rs1250477665 1996 dbSNP
rs1423085742 2005 dbSNP
rs1420175036 2007 dbSNP
rs1007183374 2014 dbSNP
rs1427626001 2030 dbSNP
rs1469546207 2031 dbSNP
rs1177430984 2035 dbSNP
rs533958414 2042 dbSNP
rs1460552855 2045 dbSNP
rs886046606 2060 dbSNP
rs1372581343 2067 dbSNP
rs1391880544 2088 dbSNP
rs1802213 2090 dbSNP
rs1318773672 2104 dbSNP
rs978718543 2107 dbSNP
rs1343414429 2119 dbSNP
rs969013726 2146 dbSNP
rs1283551457 2149 dbSNP
rs1325195377 2151 dbSNP
rs55955456 2152 dbSNP
rs1201875824 2164 dbSNP
rs1250247008 2166 dbSNP
rs1487355609 2167 dbSNP
rs1198074727 2168 dbSNP
rs565343768 2169 dbSNP
rs1480324295 2181 dbSNP
rs929973697 2184 dbSNP
rs547424727 2187 dbSNP
rs557527426 2193 dbSNP
rs1426934871 2199 dbSNP
rs879397905 2199 dbSNP
rs529004838 2201 dbSNP
rs1355179865 2231 dbSNP
rs1030072316 2237 dbSNP
rs993641039 2242 dbSNP
rs898018133 2247 dbSNP
rs568214098 2248 dbSNP
rs1333361353 2262 dbSNP
rs1369347292 2267 dbSNP
rs114929589 2270 dbSNP
rs375951887 2274 dbSNP
rs1307576923 2275 dbSNP
rs1386680735 2281 dbSNP
rs762075313 2282 dbSNP
rs1490319552 2292 dbSNP
rs1333777849 2297 dbSNP
rs79573437 2301 dbSNP
rs1485052637 2315 dbSNP
rs1186149078 2318 dbSNP
rs949398841 2322 dbSNP
rs896475181 2332 dbSNP
rs1161706869 2338 dbSNP
rs1383351244 2340 dbSNP
rs1423903704 2350 dbSNP
rs1052554494 2352 dbSNP
rs138016109 2364 dbSNP
rs935388827 2367 dbSNP
rs1467615474 2373 dbSNP
rs1436692056 2376 dbSNP
rs924482935 2390 dbSNP
rs977952576 2393 dbSNP
rs1378158107 2395 dbSNP
rs966809462 2401 dbSNP
rs1029980570 2407 dbSNP
rs1175336324 2409 dbSNP
rs1431338889 2416 dbSNP
rs997714204 2418 dbSNP
rs964487033 2422 dbSNP
rs534710638 2437 dbSNP
rs1242946087 2439 dbSNP
rs1486954103 2447 dbSNP
rs1181877499 2453 dbSNP
rs886046605 2459 dbSNP
rs12416 2468 dbSNP
rs150810981 2471 dbSNP
rs189947699 2472 dbSNP
rs1399149255 2473 dbSNP
rs910508833 2474 dbSNP
rs888586359 2476 dbSNP
rs954408947 2484 dbSNP
rs1254869898 2487 dbSNP
rs886046604 2490 dbSNP
rs994411264 2496 dbSNP
rs1454039637 2497 dbSNP
rs897184787 2500 dbSNP
rs541480699 2502 dbSNP
rs1046383186 2504 dbSNP
rs1233239502 2506 dbSNP
rs1370592820 2508 dbSNP
rs1222810270 2518 dbSNP
rs1346331399 2520 dbSNP
rs1284546771 2529 dbSNP
rs1330875563 2530 dbSNP
rs1201539346 2545 dbSNP
rs949378075 2567 dbSNP
rs1461700285 2570 dbSNP
rs1185392913 2573 dbSNP
rs916670654 2576 dbSNP
rs1029937550 2578 dbSNP
rs1468691243 2580 dbSNP
rs1176778787 2581 dbSNP
rs1408995808 2583 dbSNP
rs781659102 2583 dbSNP
rs1055113150 2584 dbSNP
rs936524124 2587 dbSNP
rs769571551 2591 dbSNP
rs1470572029 2594 dbSNP
rs574033399 2595 dbSNP
rs1336753881 2598 dbSNP
rs925106997 2616 dbSNP
rs1376482448 2617 dbSNP
rs1352210800 2618 dbSNP
rs1440857626 2619 dbSNP
rs1327045732 2620 dbSNP
rs978003212 2623 dbSNP
rs966650785 2625 dbSNP
rs1016434087 2642 dbSNP
rs922965227 2648 dbSNP
rs1128642 2649 dbSNP
rs1324048328 2655 dbSNP
rs1023921785 2659 dbSNP
rs886046603 2668 dbSNP
rs184628753 2678 dbSNP
rs555416400 2679 dbSNP
rs896506229 2683 dbSNP
rs1052834649 2694 dbSNP
rs964707415 2699 dbSNP
rs886046602 2701 dbSNP
rs1464494606 2704 dbSNP
rs903898142 2706 dbSNP
rs1005960992 2720 dbSNP
rs1409963634 2726 dbSNP
rs1328931170 2728 dbSNP
rs1371919839 2730 dbSNP
rs952880831 2745 dbSNP
rs1302177863 2747 dbSNP
rs1159057561 2748 dbSNP
rs947256092 2750 dbSNP
rs1235153971 2751 dbSNP
rs1438796090 2751 dbSNP
rs796344574 2751 dbSNP
rs1268273535 2752 dbSNP
rs145731044 2756 dbSNP
rs1189233812 2761 dbSNP
rs1275409784 2764 dbSNP
rs1027150532 2774 dbSNP
rs1220473949 2785 dbSNP
rs757621603 2786 dbSNP
rs1452484358 2789 dbSNP
rs922954856 2793 dbSNP
rs1371759677 2802 dbSNP
rs1475359947 2806 dbSNP
rs972099498 2812 dbSNP
rs897411508 2819 dbSNP
rs1422233446 2826 dbSNP
rs1162464890 2831 dbSNP
rs1365808976 2837 dbSNP
rs1025606598 2839 dbSNP
rs1013608233 2846 dbSNP
rs1288736424 2847 dbSNP
rs895123603 2850 dbSNP
rs1431339071 2857 dbSNP
rs576268362 2857 dbSNP
rs984543332 2861 dbSNP
rs1413144053 2865 dbSNP
rs936741923 2875 dbSNP
rs557986782 2879 dbSNP
rs1042195456 2883 dbSNP
rs181585883 2889 dbSNP
rs923216829 2891 dbSNP
rs886046601 2898 dbSNP
rs565311174 2901 dbSNP
rs960914955 2905 dbSNP
rs976374968 2907 dbSNP
rs1446814653 2913 dbSNP
rs943078180 2913 dbSNP
rs1189715417 2917 dbSNP
rs1362399998 2918 dbSNP
rs1298782034 2927 dbSNP
rs1418986361 2930 dbSNP
rs1358458882 2934 dbSNP
rs1164762883 2936 dbSNP
rs1182434801 2941 dbSNP
rs910200635 2941 dbSNP
rs1368594282 2947 dbSNP
rs1031005098 2951 dbSNP
rs1156479822 2955 dbSNP
rs984578663 2959 dbSNP
rs999974154 2962 dbSNP
rs1322385144 2988 dbSNP
rs1380484789 2993 dbSNP
rs1451896936 2996 dbSNP
rs951765802 3006 dbSNP
rs1367467087 3009 dbSNP
rs553504659 3010 dbSNP
rs1184823321 3020 dbSNP
rs1026032338 3029 dbSNP
rs972927448 3034 dbSNP
rs535470105 3035 dbSNP
rs1478490348 3054 dbSNP
rs1247208699 3056 dbSNP
rs1263251249 3074 dbSNP
rs1350332699 3077 dbSNP
rs1218038403 3086 dbSNP
rs1025239684 3089 dbSNP
rs1014243832 3091 dbSNP
rs1282668809 3092 dbSNP
rs1270486970 3094 dbSNP
rs1460356266 3098 dbSNP
rs1183561622 3111 dbSNP
rs1256195081 3113 dbSNP
rs1425063886 3120 dbSNP
rs1179154775 3140 dbSNP
rs895177427 3143 dbSNP
rs1472752153 3156 dbSNP
rs1161087193 3159 dbSNP
rs1033638657 3174 dbSNP
rs1469199021 3185 dbSNP
rs888969272 3197 dbSNP
rs1402938406 3201 dbSNP
rs1397868991 3202 dbSNP
rs1050189393 3206 dbSNP
rs933240513 3224 dbSNP
rs923218858 3234 dbSNP
rs568042211 3244 dbSNP
rs74775778 3247 dbSNP
rs750160851 3248 dbSNP
rs1203537160 3251 dbSNP
rs903956314 3253 dbSNP
rs531527606 3254 dbSNP
rs1042828097 3256 dbSNP
rs570670083 3257 dbSNP
rs1399387649 3260 dbSNP
rs1193566204 3262 dbSNP
rs1343299088 3262 dbSNP
rs945240919 3272 dbSNP
rs901659716 3275 dbSNP
rs1483165110 3276 dbSNP
rs1183948555 3282 dbSNP
rs1426888957 3297 dbSNP
rs984557435 3307 dbSNP
rs1176626074 3329 dbSNP
rs188763411 3337 dbSNP
rs375153079 3345 dbSNP
rs1296504635 3362 dbSNP
rs184330466 3365 dbSNP
rs1410627398 3383 dbSNP
rs540618488 3389 dbSNP
rs1162414162 3395 dbSNP
rs984461109 3399 dbSNP
rs10883407 3417 dbSNP
rs192674807 3421 dbSNP
rs1477783320 3426 dbSNP
rs1314444523 3427 dbSNP
rs919027006 3429 dbSNP
rs972196065 3436 dbSNP
rs1250234560 3439 dbSNP
rs188726020 3445 dbSNP
rs960863957 3448 dbSNP
rs1240821774 3453 dbSNP
rs1266344421 3458 dbSNP
rs1201489831 3459 dbSNP
rs1490105057 3465 dbSNP
rs1031705019 3476 dbSNP
rs1452594851 3477 dbSNP
rs1269265540 3478 dbSNP
rs11405417 3486 dbSNP
rs1430502048 3486 dbSNP
rs1289573440 3487 dbSNP
rs968479225 3488 dbSNP
rs34131206 3512 dbSNP
rs1363938860 3518 dbSNP
rs961598180 3521 dbSNP
rs1294465386 3522 dbSNP
rs1025547673 3525 dbSNP
rs992465077 3528 dbSNP
rs959607481 3538 dbSNP
rs1033859543 3540 dbSNP
rs997337758 3544 dbSNP
rs1229975315 3547 dbSNP
rs184592729 3557 dbSNP
rs1289037918 3562 dbSNP
rs752667154 3566 dbSNP
rs1221906197 3568 dbSNP
rs1266949545 3586 dbSNP
rs1484785704 3593 dbSNP
rs1185802510 3603 dbSNP
rs1000825478 3607 dbSNP
rs1451326305 3611 dbSNP
rs765785143 3619 dbSNP
rs1359824677 3631 dbSNP
rs1383520150 3636 dbSNP
rs772993193 3636 dbSNP
rs1276495612 3651 dbSNP
rs562028646 3669 dbSNP
rs886046600 3670 dbSNP
rs543904506 3672 dbSNP
rs1010047850 3699 dbSNP
rs1323642965 3704 dbSNP
rs576180531 3708 dbSNP
rs1366548548 3716 dbSNP
rs1437969188 3717 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796040. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796040
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000016171.5 | 3UTR | UUGGCACUAUUUCUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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