pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol SCARF1   
Synonyms SREC, SREC-I, SREC1
Description scavenger receptor class F member 1
Transcript NM_145350   
Other Transcripts NM_003693   
Expression
Putative miRNA Targets on SCARF1
3'UTR of SCARF1
(miRNA target sites are highlighted)
>SCARF1|NM_145350|3'UTR
   1 CTCGGGCCAAGCGGCCATCGGTCTCCTTCGCGGAAGGTACCAAGTTTGCACCACAGAGTCGCCGAAGCTCAGGGGAGCTC
  81 TCCAGCCCGCTCCGAAAGCCCAAGAGGCTCTCCCGGGGGGCGCAGTCGGGTCCTGAGGGCCGGGAAGCCGAAGAGTCCAC
 161 AGGCCCAGAGGAAGCAGAAGCCCCCGAGTCCTTTCCGGCGGCTGCCAGTCCCGGGGATTCAGCCACTGGCCACCGGCGGC
 241 CCCCACTTGGTGGCCGGACAGTGGCTGAGCACGTGGAAGCCATTGAGGGCAGCGTCCAGGAGAGCTCGGGCCCTGTGACC
 321 ACGATCTACATGCTGGCAGGGAAGCCCCGCGGATCCGAAGGCCCTGTCCGCTCTGTCTTCCGCCATTTTGGTAGCTTCCA
 401 GAAAGGCCAGGCGGAAGCCAAGGTCAAGAGGGCCATCCCTAAGCCTCCGCGCCAGGCCCTGAATCGGAAAAAGGGCAGCC
 481 CTGGCCTTGCCTCTGGCTCTGTCGGCCAGAGCCCCAACTCAGCCCCAAAAGCTGGGCTTCCTGGGGCCACAGGGCCTATG
 561 GCAGTCAGACCAGAGGAAGCGGTCCGGGGGCTGGGGGCTGGCACCGAGAGTTCAAGGAGAGCCCAGGAGCCAGTCTCTGG
 641 CTGTGGCTCCCCAGAACAGGATCCCCAGAAGCAGGCTGAAGAGGAAAGGCAGGAGGAACCTGAGTATGAGAATGTTGTAC
 721 CCATCTCCAGGCCACCAGAACCCTGATGACCTTGAATTTGGGGAGTGGGGAGAGTGGATGGACTAGACTGTGCTGTGTGC
 801 TGGAAAATGATCCCGGGGCCAGGACAGACAAACCAGAGCCTCTGCGCCTCCACAGGGAAAAGGCAAGGCTTCCAGGCCAG
 881 TTGGCCCAGGCCCCTGGCAGTGCTCCCGGAGGGGCCCAGGAAGGCCTGGGCAGAGACCCTGTAGGATGGGGTCAGGAAGG
 961 GTTGCCTGCAGGGACTTTTGCTCTGCTGTCCTGGACCCTGTGTGCCTCATAAGGGCTATTCTTTCTTTCACGTGCAAAAC
1041 ATTTTTCTGAAATAGCAAACAACCTACATGTTTGCTGATAAAAGATTGGCTAAACAAATTTTTTTTTTTTTTTTTGAGAC
1121 AGAATCTCCCTCTGTCCCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGC
1201 CCTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCTCCACCACGCTTGGCTAATTTTTTTGTATATTTA
1281 ATAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAA
1361 GTGCTGGGATGACAGGCATGAGCCACCACGCCTGGTCTATGAACTTTTTAAAAAGGATGTATGTGTATAAAAACAGATTC
1441 AAGGGAAAGGCACTAAATGGTTTTTTCCTCTGGAAGATGAGATTGTAGGTGATATTTATTTTCTTCTGAAACTTTTGTAT
1521 AGTTTGCAAATTTTCTACAGTGAACATTCTTTTTTACTTTTGTTACTAGATTGAATTTGATAAAGTATAATAAAAAGCAA
1601 TGATCTTTGTTAAAAAAATAAAAAGTACTAACATTACAGACATGTAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccuACGUUUAAAAu 5'
                 |||||||||| 
Target 5' tatagttTGCAAATTTTc 3'
1518 - 1535 155.00 -6.90
2
miRNA  3' agGACC--UACGUUUAAAAu 5'
            :|||  |  |||||||| 
Target 5' gaTTGGCTAAACAAATTTTt 3'
1084 - 1103 150.00 -6.80
3
miRNA  3' agGACC---UACGUUUAAAAu 5'
            ||||   ||| || |||| 
Target 5' gcCTGGTCTATG-AACTTTTt 3'
1390 - 1409 123.00 -9.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
709150 715 ClinVar
COSM4400896 2 COSMIC
COSM3514490 3 COSMIC
COSM7572916 4 COSMIC
COSM3514489 7 COSMIC
COSM4064093 12 COSMIC
COSM4531125 13 COSMIC
COSM9030222 20 COSMIC
COSM4472332 29 COSMIC
COSM4829567 31 COSMIC
COSM975721 39 COSMIC
COSM4723895 62 COSMIC
COSM3514488 64 COSMIC
COSM7616251 75 COSMIC
COSM5604785 78 COSMIC
COSM7352467 84 COSMIC
COSM9738055 87 COSMIC
COSM975720 88 COSMIC
COSM9173326 93 COSMIC
COSM2738414 94 COSMIC
COSM7302842 109 COSMIC
COSM9478534 113 COSMIC
COSM2738410 114 COSMIC
COSM2738411 115 COSMIC
COSM7347658 115 COSMIC
COSM1381014 121 COSMIC
COSM1381013 122 COSMIC
COSM8914154 125 COSMIC
COSM1679353 141 COSMIC
COSM7673748 142 COSMIC
COSM5055232 143 COSMIC
COSM5550292 147 COSMIC
COSM4064092 149 COSMIC
COSM4993933 161 COSMIC
COSM9061105 171 COSMIC
COSM1709546 174 COSMIC
COSM3514487 190 COSMIC
COSM7968191 191 COSMIC
COSM7176155 195 COSMIC
COSM2738406 197 COSMIC
COSM9149968 199 COSMIC
COSM8282228 200 COSMIC
COSM5055231 201 COSMIC
COSM7567352 209 COSMIC
COSM4723894 212 COSMIC
COSM9736694 214 COSMIC
COSM4930888 225 COSMIC
COSM5628912 234 COSMIC
COSM3755270 252 COSMIC
COSM4723893 253 COSMIC
COSM9174726 254 COSMIC
COSM8205870 256 COSMIC
COSM9175856 259 COSMIC
COSM7804990 264 COSMIC
COSM4436100 267 COSMIC
COSM6772591 272 COSMIC
COSM5055230 294 COSMIC
COSM9648835 299 COSMIC
COSM3514486 302 COSMIC
COSM3514485 311 COSMIC
COSM1324154 312 COSMIC
COSM2738405 323 COSMIC
COSM8375659 327 COSMIC
COSM3514484 341 COSMIC
COSM9664112 345 COSMIC
COSM4534547 352 COSMIC
COSM975719 357 COSMIC
COSM5899167 360 COSMIC
COSM5899166 361 COSMIC
COSM6772586 364 COSMIC
COSM3742089 369 COSMIC
COSM4064091 377 COSMIC
COSM8626975 381 COSMIC
COSM4064090 382 COSMIC
COSM7633372 399 COSMIC
COSM6585858 401 COSMIC
COSM3514483 405 COSMIC
COSM975718 412 COSMIC
COSM6002891 413 COSMIC
COSM4395947 414 COSMIC
COSM1189354 422 COSMIC
COSM9859457 449 COSMIC
COSM7295662 450 COSMIC
COSM9229749 451 COSMIC
COSM8426150 466 COSMIC
COSM4535650 467 COSMIC
COSM7987968 473 COSMIC
COSM9546727 486 COSMIC
COSM9684530 486 COSMIC
COSM8625844 503 COSMIC
COSM6388492 504 COSMIC
COSM4535951 505 COSMIC
COSM9898695 507 COSMIC
COSM6209363 515 COSMIC
COSM4064089 544 COSMIC
COSM3514482 561 COSMIC
COSM3988784 567 COSMIC
COSM9747973 584 COSMIC
COSM2738398 585 COSMIC
COSM4746491 586 COSMIC
COSM704946 586 COSMIC
COSM315000 590 COSMIC
COSM6772582 593 COSMIC
COSM9665149 595 COSMIC
COSM7154207 613 COSMIC
COSM4263476 616 COSMIC
COSM139029 619 COSMIC
COSM7258986 623 COSMIC
COSM4537021 627 COSMIC
COSM1224767 628 COSMIC
COSM5706298 640 COSMIC
COSM704947 666 COSMIC
COSM8879667 674 COSMIC
COSM5538554 680 COSMIC
COSM8016166 684 COSMIC
COSM6488503 689 COSMIC
COSM8005535 700 COSMIC
COSM6478284 705 COSMIC
COSM9066426 710 COSMIC
COSM8265389 720 COSMIC
COSM6225395 721 COSMIC
COSM9573332 725 COSMIC
COSM3514481 739 COSMIC
COSM9788673 742 COSMIC
COSM1640595 744 COSMIC
COSN31505980 748 COSMIC
COSN26993845 774 COSMIC
COSN31504950 788 COSMIC
COSN26993844 798 COSMIC
COSN26993846 815 COSMIC
COSN30131279 815 COSMIC
COSN30449389 816 COSMIC
COSN30122277 845 COSMIC
COSN30166823 908 COSMIC
COSN17181634 974 COSMIC
COSN20113239 1099 COSMIC
COSN1193342 1100 COSMIC
COSN7160814 1118 COSMIC
COSN24378418 1160 COSMIC
COSN21067089 1257 COSMIC
COSN7160813 1389 COSMIC
rs3744644 170 GWAS
rs57812361 1115 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs775211125 3 dbSNP
rs1350045146 4 dbSNP
rs968699666 8 dbSNP
rs775242912 12 dbSNP
rs1440016527 13 dbSNP
rs1006483856 15 dbSNP
rs200063321 19 dbSNP
rs952398138 20 dbSNP
rs1228189704 26 dbSNP
rs756534892 29 dbSNP
rs748502265 30 dbSNP
rs371673485 31 dbSNP
rs3744643 32 dbSNP
rs369553841 33 dbSNP
rs533141188 37 dbSNP
rs780110267 40 dbSNP
rs1268307873 42 dbSNP
rs758412678 42 dbSNP
rs139666183 43 dbSNP
rs1409221528 44 dbSNP
rs765334408 48 dbSNP
rs143320036 49 dbSNP
rs771659806 58 dbSNP
rs1231949615 60 dbSNP
rs753620477 63 dbSNP
rs763980515 64 dbSNP
rs573328543 68 dbSNP
rs775514039 70 dbSNP
rs758931389 71 dbSNP
rs939711501 72 dbSNP
rs773881549 76 dbSNP
rs1244302729 80 dbSNP
rs61738531 84 dbSNP
rs536614166 88 dbSNP
rs199935845 89 dbSNP
rs747526710 93 dbSNP
rs780488988 94 dbSNP
rs374858815 101 dbSNP
rs148112294 103 dbSNP
rs146375226 104 dbSNP
rs35455643 106 dbSNP
rs367744850 107 dbSNP
rs1407641653 109 dbSNP
rs965197068 112 dbSNP
rs34681910 115 dbSNP
rs760501209 115 dbSNP
rs139029063 116 dbSNP
rs1235877392 119 dbSNP
rs372378145 120 dbSNP
rs763259984 121 dbSNP
rs377102796 122 dbSNP
rs770470840 127 dbSNP
rs762516708 128 dbSNP
rs36108564 129 dbSNP
rs769028671 130 dbSNP
rs371382517 132 dbSNP
rs1293642458 133 dbSNP
rs1234179450 137 dbSNP
rs1357585594 141 dbSNP
rs528173063 142 dbSNP
rs772501119 143 dbSNP
rs1362670292 148 dbSNP
rs144909941 149 dbSNP
rs757307268 150 dbSNP
rs986137646 152 dbSNP
rs1388415996 153 dbSNP
rs953477959 154 dbSNP
rs1462741811 155 dbSNP
rs749546230 156 dbSNP
rs1404629219 157 dbSNP
rs778104207 160 dbSNP
rs1428603983 161 dbSNP
rs149035622 164 dbSNP
rs1184746046 167 dbSNP
rs3744644 170 dbSNP
rs199807550 171 dbSNP
rs563123106 176 dbSNP
rs765820227 178 dbSNP
rs762474903 180 dbSNP
rs772880874 181 dbSNP
rs1327125566 182 dbSNP
rs764907690 183 dbSNP
rs544932307 185 dbSNP
rs775886804 186 dbSNP
rs200313658 187 dbSNP
rs1443567511 188 dbSNP
rs377631015 189 dbSNP
rs774876799 192 dbSNP
rs770950799 196 dbSNP
rs531229068 197 dbSNP
rs777980552 199 dbSNP
rs756463060 200 dbSNP
rs748376091 201 dbSNP
rs1195354190 204 dbSNP
rs1165005678 207 dbSNP
rs1463003157 207 dbSNP
rs1466980352 208 dbSNP
rs565482664 209 dbSNP
rs754744100 210 dbSNP
rs751472595 212 dbSNP
rs766299562 213 dbSNP
rs112951326 214 dbSNP
rs773463460 214 dbSNP
rs758297610 216 dbSNP
rs1330424130 223 dbSNP
rs749981648 225 dbSNP
rs1336023034 228 dbSNP
rs764709175 229 dbSNP
rs893929451 233 dbSNP
rs761516517 234 dbSNP
rs776212525 235 dbSNP
rs1194368176 236 dbSNP
rs8072430 237 dbSNP
rs759907989 238 dbSNP
rs1234363643 239 dbSNP
rs1398174396 240 dbSNP
rs774552190 242 dbSNP
rs771519515 247 dbSNP
rs749802403 248 dbSNP
rs935357705 249 dbSNP
rs4790250 252 dbSNP
rs1175465160 253 dbSNP
rs1452456561 254 dbSNP
rs553402990 255 dbSNP
rs781426380 256 dbSNP
rs1057057324 257 dbSNP
rs943832555 258 dbSNP
rs373556006 259 dbSNP
rs1203210164 263 dbSNP
rs1482780644 264 dbSNP
rs1273446414 267 dbSNP
rs746859739 272 dbSNP
rs779688884 273 dbSNP
rs373375993 278 dbSNP
rs1346319126 280 dbSNP
rs369956990 283 dbSNP
rs1240207183 284 dbSNP
rs1476068440 285 dbSNP
rs750351848 287 dbSNP
rs1337836810 289 dbSNP
rs201572579 293 dbSNP
rs756711666 294 dbSNP
rs201460712 299 dbSNP
rs763850810 300 dbSNP
rs574011580 304 dbSNP
rs202114778 307 dbSNP
rs1159005823 308 dbSNP
rs766848812 311 dbSNP
rs1015155372 313 dbSNP
rs1357689323 315 dbSNP
rs780161507 320 dbSNP
rs1180326322 321 dbSNP
rs536994425 322 dbSNP
rs773796651 323 dbSNP
rs770016576 325 dbSNP
rs924488257 329 dbSNP
rs1229679078 331 dbSNP
rs571159389 337 dbSNP
rs1278543357 339 dbSNP
rs1206180146 341 dbSNP
rs776540813 342 dbSNP
rs1259291667 344 dbSNP
rs768969490 345 dbSNP
rs747183547 349 dbSNP
rs779962244 350 dbSNP
rs1347425359 351 dbSNP
rs771784314 352 dbSNP
rs557537238 356 dbSNP
rs200053516 357 dbSNP
rs753440439 365 dbSNP
rs1382557390 366 dbSNP
rs777136009 367 dbSNP
rs368925073 368 dbSNP
rs374817862 369 dbSNP
rs147793367 370 dbSNP
rs763360443 381 dbSNP
rs750999193 382 dbSNP
rs1194559123 384 dbSNP
rs1194687266 389 dbSNP
rs765884105 391 dbSNP
rs1246636375 392 dbSNP
rs1208490178 394 dbSNP
rs1421938210 403 dbSNP
rs762203824 405 dbSNP
rs1274676996 406 dbSNP
rs144425748 412 dbSNP
rs768612341 413 dbSNP
rs760951767 417 dbSNP
rs549098464 418 dbSNP
rs528973386 421 dbSNP
rs771888714 422 dbSNP
rs375338375 423 dbSNP
rs1396336432 424 dbSNP
rs1370262465 427 dbSNP
rs774112560 428 dbSNP
rs770915817 432 dbSNP
rs889738253 434 dbSNP
rs749178878 435 dbSNP
rs1348928996 436 dbSNP
rs777343516 437 dbSNP
rs1168547296 439 dbSNP
rs370443375 448 dbSNP
rs142139534 449 dbSNP
rs780951678 450 dbSNP
rs201667370 451 dbSNP
rs569682010 452 dbSNP
rs549465599 453 dbSNP
rs773604062 453 dbSNP
rs761938810 454 dbSNP
rs765680418 457 dbSNP
rs1218406740 458 dbSNP
rs1433471689 461 dbSNP
rs1158831921 462 dbSNP
rs750671486 465 dbSNP
rs147642060 466 dbSNP
rs1296804304 468 dbSNP
rs1455687725 470 dbSNP
rs1234871547 475 dbSNP
rs1321753388 478 dbSNP
rs372315017 480 dbSNP
rs1291541706 486 dbSNP
rs919659791 488 dbSNP
rs760634839 492 dbSNP
rs775520807 493 dbSNP
rs3760460 496 dbSNP
rs777229187 498 dbSNP
rs148478683 503 dbSNP
rs144257456 504 dbSNP
rs770566724 517 dbSNP
rs1397321157 518 dbSNP
rs1189825731 520 dbSNP
rs749262027 522 dbSNP
rs772974924 525 dbSNP
rs182595261 528 dbSNP
rs754378450 531 dbSNP
rs747651795 532 dbSNP
rs368378773 536 dbSNP
rs1211560744 540 dbSNP
rs754733472 541 dbSNP
rs970966912 543 dbSNP
rs1298999538 547 dbSNP
rs374751391 550 dbSNP
rs1023921534 555 dbSNP
rs779421859 558 dbSNP
rs757502682 560 dbSNP
rs541363286 561 dbSNP
rs754388692 562 dbSNP
rs1368832223 570 dbSNP
rs1307470404 573 dbSNP
rs764553441 580 dbSNP
rs200619498 581 dbSNP
rs1377798184 582 dbSNP
rs756626887 584 dbSNP
rs373490715 585 dbSNP
rs149977313 586 dbSNP
rs1178609807 590 dbSNP
rs1160433525 591 dbSNP
rs958466471 605 dbSNP
rs557325340 606 dbSNP
rs1250492610 610 dbSNP
rs774498375 613 dbSNP
rs1486328334 615 dbSNP
rs1254190842 616 dbSNP
rs768982418 616 dbSNP
rs1209274479 617 dbSNP
rs766220239 618 dbSNP
rs761115910 619 dbSNP
rs762616585 619 dbSNP
rs775705670 620 dbSNP
rs1230514428 621 dbSNP
rs770685590 621 dbSNP
rs773026702 622 dbSNP
rs769667984 623 dbSNP
rs1415484349 625 dbSNP
rs761828450 626 dbSNP
rs1209068296 627 dbSNP
rs776344012 629 dbSNP
rs1465947827 631 dbSNP
rs1231309854 632 dbSNP
rs768210816 633 dbSNP
rs746671065 634 dbSNP
rs12950497 635 dbSNP
rs748910318 635 dbSNP
rs1274992742 636 dbSNP
rs1321746147 637 dbSNP
rs771728050 641 dbSNP
rs749666238 643 dbSNP
rs778191507 644 dbSNP
rs756649650 647 dbSNP
rs577529995 649 dbSNP
rs139315899 651 dbSNP
rs751813163 653 dbSNP
rs1243686634 656 dbSNP
rs1249237879 658 dbSNP
rs1481444267 659 dbSNP
rs1206581360 663 dbSNP
rs1328151937 664 dbSNP
rs377133011 666 dbSNP
rs763210647 669 dbSNP
rs1323617167 671 dbSNP
rs1310627320 672 dbSNP
rs557661348 674 dbSNP
rs754035720 676 dbSNP
rs1190632941 682 dbSNP
rs1363256390 683 dbSNP
rs1323050447 685 dbSNP
rs374034845 686 dbSNP
rs61729426 688 dbSNP
rs1293351492 692 dbSNP
rs1165232692 695 dbSNP
rs1459093274 699 dbSNP
rs1366252493 700 dbSNP
rs1375695547 701 dbSNP
rs764472117 702 dbSNP
rs760251413 703 dbSNP
rs369658364 704 dbSNP
rs776648030 710 dbSNP
rs142148792 715 dbSNP
rs760219426 719 dbSNP
rs777354163 725 dbSNP
rs1447490926 726 dbSNP
rs139209826 736 dbSNP
rs1214600298 738 dbSNP
rs1489576352 740 dbSNP
rs962312743 741 dbSNP
rs1339050480 742 dbSNP
rs769323005 744 dbSNP
rs771682585 744 dbSNP
rs745533454 748 dbSNP
rs778008728 758 dbSNP
rs75126621 762 dbSNP
rs770087678 763 dbSNP
rs748677272 766 dbSNP
rs781636038 767 dbSNP
rs755448519 774 dbSNP
rs535540204 781 dbSNP
rs780169571 784 dbSNP
rs758613523 786 dbSNP
rs1420345323 789 dbSNP
rs1462065172 792 dbSNP
rs747589985 793 dbSNP
rs1407988412 794 dbSNP
rs1166679529 796 dbSNP
rs985013076 807 dbSNP
rs952199066 814 dbSNP
rs1423648442 815 dbSNP
rs898325284 815 dbSNP
rs1184855573 816 dbSNP
rs1036751620 819 dbSNP
rs1450184725 820 dbSNP
rs878993821 825 dbSNP
rs939759871 827 dbSNP
rs542511682 834 dbSNP
rs569609745 838 dbSNP
rs1045408824 840 dbSNP
rs948379447 845 dbSNP
rs916809382 846 dbSNP
rs1366676633 847 dbSNP
rs1035392171 850 dbSNP
rs1002478704 854 dbSNP
rs549818602 858 dbSNP
rs902826101 863 dbSNP
rs866120142 884 dbSNP
rs1238042018 885 dbSNP
rs1279868241 891 dbSNP
rs1197485600 893 dbSNP
rs576834667 894 dbSNP
rs1214205376 896 dbSNP
rs893007154 900 dbSNP
rs1193133066 902 dbSNP
rs958195541 907 dbSNP
rs1425533885 908 dbSNP
rs1399913808 911 dbSNP
rs542373228 923 dbSNP
rs539412440 924 dbSNP
rs1435158182 925 dbSNP
rs932113741 941 dbSNP
rs1368335168 942 dbSNP
rs1290320444 944 dbSNP
rs1438086138 951 dbSNP
rs774908066 968 dbSNP
rs967177265 971 dbSNP
rs1350352241 973 dbSNP
rs765561266 985 dbSNP
rs1019684853 990 dbSNP
rs1270542870 991 dbSNP
rs1330486998 993 dbSNP
rs1213137214 997 dbSNP
rs1251146913 1008 dbSNP
rs1008155814 1028 dbSNP
rs954063454 1029 dbSNP
rs1308377706 1031 dbSNP
rs1028158050 1032 dbSNP
rs1379185825 1040 dbSNP
rs1175310830 1047 dbSNP
rs1314007289 1049 dbSNP
rs1414069662 1062 dbSNP
rs570440457 1063 dbSNP
rs1391582578 1064 dbSNP
rs907842473 1070 dbSNP
rs1323764499 1074 dbSNP
rs1334844702 1075 dbSNP
rs1440442556 1078 dbSNP
rs1290670916 1081 dbSNP
rs1351491679 1086 dbSNP
rs1457593250 1093 dbSNP
rs985044330 1098 dbSNP
rs11078547 1099 dbSNP
rs376173030 1099 dbSNP
rs1037272192 1100 dbSNP
rs1004074314 1103 dbSNP
rs916789689 1109 dbSNP
rs1167370568 1112 dbSNP
rs1253626108 1113 dbSNP
rs1163387104 1116 dbSNP
rs1228243762 1116 dbSNP
rs1395306025 1116 dbSNP
rs1472806202 1116 dbSNP
rs398041517 1116 dbSNP
rs543604554 1116 dbSNP
rs549617398 1116 dbSNP
rs57812361 1116 dbSNP
rs796430507 1116 dbSNP
rs1309486718 1117 dbSNP
rs1399270864 1117 dbSNP
rs1380260636 1121 dbSNP
rs1414584502 1124 dbSNP
rs1291940046 1126 dbSNP
rs991384325 1128 dbSNP
rs1439822326 1129 dbSNP
rs958507240 1138 dbSNP
rs906917051 1140 dbSNP
rs34536052 1144 dbSNP
rs185843775 1150 dbSNP
rs184062420 1155 dbSNP
rs948327443 1156 dbSNP
rs1207491948 1158 dbSNP
rs1275656021 1160 dbSNP
rs1290546434 1161 dbSNP
rs1209942730 1163 dbSNP
rs559941039 1164 dbSNP
rs1487955442 1166 dbSNP
rs1188169025 1175 dbSNP
rs1002542325 1181 dbSNP
rs1447155958 1183 dbSNP
rs1170051323 1188 dbSNP
rs1246866519 1190 dbSNP
rs1311502054 1191 dbSNP
rs1404975363 1192 dbSNP
rs1397056824 1198 dbSNP
rs1318266563 1199 dbSNP
rs1054156921 1202 dbSNP
rs766979480 1207 dbSNP
rs549261752 1208 dbSNP
rs1254096214 1210 dbSNP
rs201667832 1210 dbSNP
rs1285288079 1213 dbSNP
rs1200912801 1215 dbSNP
rs529394993 1220 dbSNP
rs1356032930 1222 dbSNP
rs1189990781 1223 dbSNP
rs978651235 1230 dbSNP
rs563594671 1233 dbSNP
rs1173520619 1236 dbSNP
rs1379678970 1242 dbSNP
rs1466898121 1244 dbSNP
rs912623581 1246 dbSNP
rs986849884 1247 dbSNP
rs142809890 1254 dbSNP
rs1028275822 1255 dbSNP
rs995562736 1263 dbSNP
rs545002115 1269 dbSNP
rs191827305 1275 dbSNP
rs1004429013 1276 dbSNP
rs1040489890 1288 dbSNP
rs907035796 1291 dbSNP
rs35426665 1293 dbSNP
rs1303703437 1297 dbSNP
rs940717473 1298 dbSNP
rs1173356594 1301 dbSNP
rs1260047384 1317 dbSNP
rs140548041 1319 dbSNP
rs770725294 1320 dbSNP
rs1210048113 1323 dbSNP
rs1012661151 1333 dbSNP
rs1467652032 1334 dbSNP
rs1189053931 1338 dbSNP
rs1192552500 1344 dbSNP
rs886479077 1346 dbSNP
rs894269079 1349 dbSNP
rs1054510037 1350 dbSNP
rs112573996 1351 dbSNP
rs1262203698 1357 dbSNP
rs540975438 1363 dbSNP
rs1401997365 1364 dbSNP
rs572201336 1366 dbSNP
rs546118074 1368 dbSNP
rs35078976 1369 dbSNP
rs1393766746 1375 dbSNP
rs916801694 1382 dbSNP
rs991065947 1384 dbSNP
rs1042663789 1389 dbSNP
rs186223526 1390 dbSNP
rs577598323 1391 dbSNP
rs1217016549 1393 dbSNP
rs867250468 1395 dbSNP
rs1299191091 1399 dbSNP
rs181716010 1403 dbSNP
rs1230088821 1411 dbSNP
rs556322358 1418 dbSNP
rs1400717038 1423 dbSNP
rs1302734634 1438 dbSNP
rs1333478226 1456 dbSNP
rs932738674 1460 dbSNP
rs981195018 1466 dbSNP
rs1195585042 1467 dbSNP
rs576015602 1467 dbSNP
rs553003516 1470 dbSNP
rs773232766 1482 dbSNP
rs990203473 1483 dbSNP
rs1177880853 1484 dbSNP
rs1417825350 1487 dbSNP
rs1422109914 1489 dbSNP
rs1167071240 1495 dbSNP
rs962759019 1511 dbSNP
rs1476640631 1515 dbSNP
rs957036842 1517 dbSNP
rs1015885065 1519 dbSNP
rs1194146890 1520 dbSNP
rs1461609675 1526 dbSNP
rs1478658944 1529 dbSNP
rs1368422085 1539 dbSNP
rs982725462 1540 dbSNP
rs769669556 1541 dbSNP
rs1483652353 1544 dbSNP
rs1378416291 1546 dbSNP
rs577667908 1550 dbSNP
rs376433285 1553 dbSNP
rs1196752028 1555 dbSNP
rs1317531140 1556 dbSNP
rs971335687 1570 dbSNP
rs1279014922 1580 dbSNP
rs1220878562 1585 dbSNP
rs996074853 1585 dbSNP
rs1339040477 1591 dbSNP
rs1484222907 1594 dbSNP
rs748267686 1594 dbSNP
rs901676160 1597 dbSNP
rs1397119349 1600 dbSNP
rs748088283 1601 dbSNP
rs1024142114 1603 dbSNP
rs539524921 1605 dbSNP
rs570501730 1607 dbSNP
rs1399132494 1619 dbSNP
rs894216637 1625 dbSNP
rs1049115917 1628 dbSNP
rs1358502880 1632 dbSNP
rs1032774522 1633 dbSNP
rs895122174 1637 dbSNP
rs1055785992 1643 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions LCL-BAC-D2
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1133252. RNA binding protein: AGO2. Condition:Untreated ...

- Majoros WH; Lekprasert P; Mukherjee N; et al., 2013, Nature methods.

Article - Majoros WH; Lekprasert P; Mukherjee N; et al.
- Nature methods, 2013
High-throughput sequencing has opened numerous possibilities for the identification of regulatory RNA-binding events. Cross-linking and immunoprecipitation of Argonaute proteins can pinpoint a microRNA (miRNA) target site within tens of bases but leaves the identity of the miRNA unresolved. A flexible computational framework, microMUMMIE, integrates sequence with cross-linking features and reliably identifies the miRNA family involved in each binding event. It considerably outperforms sequence-only approaches and quantifies the prevalence of noncanonical binding modes.
LinkOut: [PMID: 23708386]
CLIP-seq Support 1 for dataset GSM1133252
Method / RBP PAR-CLIP / AGO2
Cell line / Condition LCL-BAC-D2 / Untreated
Location of target site ENST00000571272.1 | 3UTR | UUGGCUAAACAAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23708386 / GSE46611
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000571272.1 | 3UTR | UUGGCUAAACAAAUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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