pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol EDAR   
Synonyms DL, ECTD10A, ECTD10B, ED1R, ED3, ED5, EDA-A1R, EDA1R, EDA3, HRM1
Description ectodysplasin A receptor
Transcript NM_022336   
Expression
Putative miRNA Targets on EDAR
3'UTR of EDAR
(miRNA target sites are highlighted)
>EDAR|NM_022336|3'UTR
   1 AAAGCATGCCTGTGGGCTGTCCTCCCAGGACAAGCCAAGGAGCCAACGAGGGCTCTGGAGCTGTGAGTGGTGCCAAAAGA
  81 CTGCCAAGAATCAAGGCTTTTGTGATATGTCACCGTATGCCTTAGGATGTTCAAGGAGCCAGACGAAATAAGGCCTGTCT
 161 TCCAATTTAACCAAAGATAAAGGACTAGAGCCGGGATACTTTCAGATGCTCGCCTGTACCTCACCAGGCAGAGTAAATAT
 241 CTACTCACTCATACAGCCAGCCCACCAGCCCACCATTAACTCACTGAACAATGAGACAATGTTGAGGACTCAAATGAATC
 321 AAACCCCGTGGGAATGACAGAAGTGAAGAATCTGGTCCCTGTCTTTAAGGAGTTTGCACTCCAGTAGAAGACAGAAGGAA
 401 CGTATGTTTACAAACCACTTCACTGGAAGACGTCAAACAAGCTGAATGAAGGGGCGCTTAGAAAACGTTAATAGAAGTTC
 481 TAAGCGGGAGATGACTCCCTACTGGGATGATGAAGGATGGCATCCTAGTGAAGAAGCAGCTCAAACATTTTGATAAAATG
 561 GCAACAAAATGCAGACACCCTGCTCCAGGTATTATTTCAGGTTTAGTACAAGTCTGTTAATACCCTATGTGGTTTCATTA
 641 GGATAACTTTTTACCTATCCTTGAGGTCATCCATATTCTTACAGGCCTTCCAGTCAATAATGGAAGAGCTCACTCTATAC
 721 AAAACCAATATGCAAGGCATGTGTTTGTCCAAGCAATTGGATGTGTGCAGTAGCCAATTTCATTTACTGCATTACTCTTT
 801 GGCCTGGGAACCCTGTGGTCTGCACTACATGTGAATGGCCTTCCACTTCAGTCTTAGGCAGATTTGACCTTTTAGGGGCA
 881 GCAATGCTGAAGGACACAGCAATTTAAATTATAATGTGTCAGGCTGTGTTTTCACTTCAAACATGTATGAGTAGTCAGCT
 961 GTAATTAGAGAAATGATGACTTCCTAAGAGTTCAGCCACGCATAATTCTAGATTTCAAGAGCATCTAAGACTTGTGGATT
1041 AGCCTCATGGCATGAGAGTTTCAGACTCAGCCTTCTGAGCCAGTCAGGGAAAGTGGAGTTCTGCAGCGCAAATGAGAGCC
1121 TGGGCTTGATGTCGAGGGAGCTGGCTTCTAGTTGTGCCACCTTGGGCCTTGTCTTTTCCTCTCTCTGCCTCAGTTTCTCG
1201 TCTGCCAATGAGATGTTAGTTAGTGATTCTATAATTGGGGCAGGTAGGGTTCAGGTGAGCAAAAAGAAAGTGGAGCTATA
1281 GGAAATGCCAGGCCTTTGAGGTGCTCTATGGAAGTCAACACAGTGTGGTTTGTCCATTTAAATGGGAATAAAAACAGAAA
1361 AACTCAGACTTGGCATTTTCACAATAACTGCAATGGTTTGACATAACATTTATAGGCAGAAAGTTAATAAACTGGCATTG
1441 TTCTTGGCATATTATTGTACTATCCCTGTAACTGCCAAGAGCTCAGGAGCCAGGCTAGTGATCACACCAGGGGTTAGAGT
1521 TCACTGCTGAACTCCCTGATGGCAGGTCTGTGTTTATTACTACATTAAAACAAAGTCTCTGACTTATAAAGCGAGGTTGT
1601 AAAAATTACAAGTTGCATGACTGAAAAAATGCTTTAGGGGGAAAATCAGTCATATCTTTAACACCAACAAGCAATTTCCC
1681 ACCAACGAATGTAGTACATACTGTGAGAGGATCATAATGAGGTCCTGAATATTTAATATCATCATTTACTGTGTCTGTTT
1761 GCTGCTGTTTTTCGAACCTATTTGGTTTACCCTGCAAGCTAAATACTCCACGGCAGAGCTTAATTATCCTTTTAATTCCT
1841 CTTTGAAATCCTGTGGTGCCCCCTTCCCCCTGCCTTGTGATGATGATGAGTGAGTCTCCCCTTAATTAGACTGCAAATGT
1921 CACTTGTGATGAGTGTGCCATTCCAGGATAACAGCTTGCACCCTCCTCAGAATGTTTTCAGCGAAAGAGTGGGGTGGCTG
2001 TTCTCTGCTCCTGGTGCTTTGGCCTCATTTCACACTATTAGAATTCTGGGGCTGTAAGGCCAGCCAGTGTCAGCTCATGT
2081 TCCATTGGCTCTCCACCTGCCATTTTTAGGGAGCTATTCCTTATATAGTTACAAATTCCCTTGTCATTTACTTATTTGGA
2161 AACATGGGATTTACTCTGACAAGCTTTAGCCTATGTTATGGGATTCAGAACAATGAGATCATAATAATTCTCACTGACCA
2241 AAGCTGGGACTCCATCCTGCCATTTTTGTGTGGAGATATTCATAATTCTGCAATACTTTAAAACATTTAGAAAACACCCC
2321 AGGGTAGGTCTGTGGCCCTTAGACAGTGAAGTCTTAATTGTCAATATTATTTTTGTCTAATTCTGTATATATATAACTTA
2401 TTATATTTTATAATCTCAATAAACACATTAATAAGAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuucaUUGAAGGUGAACCGa 5'
                ||||   ||||||| 
Target 5' cagaaaAACTCAGACTTGGCa 3'
1355 - 1375 151.00 -10.70
2
miRNA  3' auUUCAUUG-AAGGUGAACCGa 5'
            || |::| || : |||||| 
Target 5' taAACTGGCATTGTTCTTGGCa 3'
1428 - 1449 127.00 -9.10
3
miRNA  3' auuuCAUUGAA--GGUGAACCga 5'
              || |:||  ::|:||||  
Target 5' ccttGTCATTTACTTATTTGGaa 3'
2139 - 2161 119.00 -7.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
261570 16 ClinVar
155862 42 ClinVar
330704 188 ClinVar
893277 191 ClinVar
893276 242 ClinVar
893275 254 ClinVar
330703 328 ClinVar
893274 402 ClinVar
893273 447 ClinVar
893069 485 ClinVar
893068 486 ClinVar
330702 499 ClinVar
893067 546 ClinVar
330701 602 ClinVar
330700 625 ClinVar
893066 639 ClinVar
893065 714 ClinVar
330699 757 ClinVar
894492 791 ClinVar
894491 867 ClinVar
330698 895 ClinVar
330697 935 ClinVar
894490 976 ClinVar
330696 999 ClinVar
330695 1107 ClinVar
894098 1108 ClinVar
330694 1129 ClinVar
894097 1133 ClinVar
330693 1181 ClinVar
894096 1199 ClinVar
330692 1226 ClinVar
330691 1248 ClinVar
893246 1298 ClinVar
330690 1319 ClinVar
893245 1364 ClinVar
893244 1366 ClinVar
893243 1435 ClinVar
330689 1535 ClinVar
893242 1563 ClinVar
330688 1598 ClinVar
893029 1647 ClinVar
893028 1678 ClinVar
893027 1703 ClinVar
893026 1710 ClinVar
330687 1761 ClinVar
893025 1774 ClinVar
893024 1798 ClinVar
330686 1896 ClinVar
330685 1900 ClinVar
894457 2016 ClinVar
894456 2078 ClinVar
894455 2141 ClinVar
330684 2155 ClinVar
894454 2189 ClinVar
894453 2376 ClinVar
330683 2426 ClinVar
330682 2431 ClinVar
COSN6673496 42 COSMIC
COSN30146874 65 COSMIC
COSN26563018 73 COSMIC
COSN31545316 84 COSMIC
COSN30121899 145 COSMIC
COSN31546525 176 COSMIC
COSN8981749 189 COSMIC
COSN31566933 196 COSMIC
COSN17181662 208 COSMIC
COSN28291755 266 COSMIC
COSN15306585 486 COSMIC
COSN23795170 737 COSMIC
COSN6673495 757 COSMIC
COSN25529401 867 COSMIC
COSN24014061 889 COSMIC
COSN6673494 935 COSMIC
COSN32057610 999 COSMIC
COSN9854905 1012 COSMIC
COSN6673493 1133 COSMIC
COSN1777692 1141 COSMIC
COSN31607157 1577 COSMIC
COSN31537696 1592 COSMIC
COSN26561582 1686 COSMIC
COSN24299225 1703 COSMIC
COSN8981748 1749 COSMIC
COSN31596032 1801 COSMIC
COSN26635207 1828 COSMIC
COSN21857005 2204 COSMIC
COSN31585194 2227 COSMIC
COSN23710654 2288 COSMIC
COSN20961071 2310 COSMIC
COSN31596009 2355 COSMIC
COSN25008423 2401 COSMIC
COSN31541061 2435 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1205358316 4 dbSNP
rs530945702 9 dbSNP
rs764443374 12 dbSNP
rs199984607 16 dbSNP
rs748617098 19 dbSNP
rs1218370064 21 dbSNP
rs1345919094 24 dbSNP
rs754345329 26 dbSNP
rs1407947908 34 dbSNP
rs1369930024 39 dbSNP
rs7607563 42 dbSNP
rs889617202 46 dbSNP
rs111591018 47 dbSNP
rs370147384 48 dbSNP
rs1270414987 50 dbSNP
rs768162724 51 dbSNP
rs897053285 68 dbSNP
rs188257661 69 dbSNP
rs982753996 73 dbSNP
rs951344216 80 dbSNP
rs1375905910 82 dbSNP
rs1471102339 88 dbSNP
rs1027045768 102 dbSNP
rs769136515 114 dbSNP
rs1189903497 115 dbSNP
rs1418116382 118 dbSNP
rs964464421 119 dbSNP
rs1196707859 122 dbSNP
rs1404475259 130 dbSNP
rs1018132137 135 dbSNP
rs534753987 144 dbSNP
rs1008476829 145 dbSNP
rs1240344482 152 dbSNP
rs1279364739 152 dbSNP
rs757716764 153 dbSNP
rs1248613532 158 dbSNP
rs1242584959 162 dbSNP
rs1215023101 166 dbSNP
rs1052320183 182 dbSNP
rs1445002426 183 dbSNP
rs768401042 188 dbSNP
rs780909525 191 dbSNP
rs559802013 192 dbSNP
rs903490347 193 dbSNP
rs927493621 195 dbSNP
rs979302277 197 dbSNP
rs540186842 211 dbSNP
rs1281417985 212 dbSNP
rs1043396400 219 dbSNP
rs748843905 222 dbSNP
rs1165227402 232 dbSNP
rs1220595974 235 dbSNP
rs947851463 237 dbSNP
rs746557228 240 dbSNP
rs1398672274 242 dbSNP
rs1055999776 243 dbSNP
rs938814773 252 dbSNP
rs928893721 253 dbSNP
rs148961371 254 dbSNP
rs965366133 261 dbSNP
rs1454959659 266 dbSNP
rs1316130434 268 dbSNP
rs1429238524 272 dbSNP
rs1243550122 286 dbSNP
rs879053670 288 dbSNP
rs951398066 289 dbSNP
rs1019743215 293 dbSNP
rs1340777369 294 dbSNP
rs1195869151 302 dbSNP
rs1335359255 316 dbSNP
rs985570452 317 dbSNP
rs1469971083 327 dbSNP
rs75703116 328 dbSNP
rs1026836713 331 dbSNP
rs995718536 332 dbSNP
rs1374994642 340 dbSNP
rs1462608849 348 dbSNP
rs897107382 360 dbSNP
rs947430925 375 dbSNP
rs368952407 381 dbSNP
rs1337826574 385 dbSNP
rs1173845056 390 dbSNP
rs1395095856 390 dbSNP
rs112630241 392 dbSNP
rs1419620683 394 dbSNP
rs1327819359 401 dbSNP
rs758376546 402 dbSNP
rs201228294 404 dbSNP
rs1316026020 405 dbSNP
rs1205435412 418 dbSNP
rs1263547606 422 dbSNP
rs1238982747 428 dbSNP
rs1179884390 432 dbSNP
rs1264182094 447 dbSNP
rs1018769457 451 dbSNP
rs1008071854 455 dbSNP
rs752604739 456 dbSNP
rs74995065 457 dbSNP
rs80134954 458 dbSNP
rs75543689 460 dbSNP
rs539526981 462 dbSNP
rs1421508488 466 dbSNP
rs1471250047 467 dbSNP
rs896148214 472 dbSNP
rs1405989997 474 dbSNP
rs1464909871 476 dbSNP
rs970440390 485 dbSNP
rs1386736657 486 dbSNP
rs1382400802 490 dbSNP
rs1001966080 493 dbSNP
rs1337698895 495 dbSNP
rs1200788713 497 dbSNP
rs1283909321 498 dbSNP
rs886054743 499 dbSNP
rs1207802868 522 dbSNP
rs1272389336 525 dbSNP
rs999469049 534 dbSNP
rs1486328512 543 dbSNP
rs778750667 545 dbSNP
rs745732871 548 dbSNP
rs1261130926 553 dbSNP
rs1481497918 559 dbSNP
rs1043436453 560 dbSNP
rs1316148385 568 dbSNP
rs1012317487 570 dbSNP
rs1200217496 572 dbSNP
rs1425146490 576 dbSNP
rs1452315127 578 dbSNP
rs1381087468 582 dbSNP
rs1204636278 584 dbSNP
rs1419948579 588 dbSNP
rs1297130590 589 dbSNP
rs575275838 593 dbSNP
rs35582767 598 dbSNP
rs1358214270 599 dbSNP
rs886054742 602 dbSNP
rs754756964 612 dbSNP
rs1466876795 616 dbSNP
rs913524730 618 dbSNP
rs781048595 625 dbSNP
rs1169217454 627 dbSNP
rs1408110249 629 dbSNP
rs182887413 631 dbSNP
rs1308894044 633 dbSNP
rs1317221403 638 dbSNP
rs750539909 639 dbSNP
rs192325555 642 dbSNP
rs1284216360 651 dbSNP
rs985841317 659 dbSNP
rs1223375354 661 dbSNP
rs1047205062 662 dbSNP
rs1246163701 665 dbSNP
rs1487805938 666 dbSNP
rs767683116 679 dbSNP
rs1179406713 680 dbSNP
rs954166468 682 dbSNP
rs568304883 696 dbSNP
rs974137125 698 dbSNP
rs1378136383 703 dbSNP
rs1426119091 707 dbSNP
rs919990828 713 dbSNP
rs1348733331 714 dbSNP
rs1340271474 720 dbSNP
rs762476513 722 dbSNP
rs1180676761 725 dbSNP
rs1299883751 731 dbSNP
rs1481113368 741 dbSNP
rs1445837141 749 dbSNP
rs973957221 749 dbSNP
rs3749097 757 dbSNP
rs1361905015 758 dbSNP
rs768322073 762 dbSNP
rs146782206 776 dbSNP
rs1013464727 777 dbSNP
rs1206716463 783 dbSNP
rs1234013612 795 dbSNP
rs987267711 797 dbSNP
rs955426967 804 dbSNP
rs1457683565 807 dbSNP
rs1030860763 811 dbSNP
rs1245296607 812 dbSNP
rs977915742 814 dbSNP
rs1182013472 825 dbSNP
rs1412615563 827 dbSNP
rs960574686 833 dbSNP
rs1171876669 835 dbSNP
rs570496455 837 dbSNP
rs1245891334 847 dbSNP
rs1465002526 855 dbSNP
rs1002250129 857 dbSNP
rs903623499 858 dbSNP
rs1449039622 862 dbSNP
rs967989414 867 dbSNP
rs1311994726 868 dbSNP
rs1283895559 871 dbSNP
rs1377235904 873 dbSNP
rs1216440061 880 dbSNP
rs1273748135 882 dbSNP
rs1043862203 888 dbSNP
rs1197235129 893 dbSNP
rs115259025 895 dbSNP
rs1462097049 899 dbSNP
rs1373655494 908 dbSNP
rs891974426 910 dbSNP
rs1236587167 911 dbSNP
rs1053239903 918 dbSNP
rs1471588492 918 dbSNP
rs3749096 935 dbSNP
rs1477464001 939 dbSNP
rs1168370705 940 dbSNP
rs1439332079 942 dbSNP
rs372660681 942 dbSNP
rs912777078 944 dbSNP
rs1333219740 945 dbSNP
rs1366930868 945 dbSNP
rs1357671474 946 dbSNP
rs1433093057 950 dbSNP
rs1312759107 952 dbSNP
rs1278929435 971 dbSNP
rs142529386 976 dbSNP
rs1049780271 982 dbSNP
rs548719602 984 dbSNP
rs1216868893 985 dbSNP
rs10206737 999 dbSNP
rs1383136184 1000 dbSNP
rs1160303360 1002 dbSNP
rs1419877151 1005 dbSNP
rs10182877 1006 dbSNP
rs541739469 1009 dbSNP
rs1217423426 1020 dbSNP
rs1047259835 1025 dbSNP
rs1263281587 1027 dbSNP
rs930137796 1029 dbSNP
rs898760791 1031 dbSNP
rs1489469120 1033 dbSNP
rs1431425265 1034 dbSNP
rs1038989715 1035 dbSNP
rs1171801438 1037 dbSNP
rs1300433813 1045 dbSNP
rs974555751 1048 dbSNP
rs942736970 1057 dbSNP
rs1269714812 1064 dbSNP
rs1402667027 1065 dbSNP
rs1299101449 1066 dbSNP
rs1360117836 1076 dbSNP
rs1398281175 1079 dbSNP
rs1305000371 1083 dbSNP
rs1332210101 1086 dbSNP
rs911239512 1087 dbSNP
rs986797695 1090 dbSNP
rs1222384685 1096 dbSNP
rs567489279 1098 dbSNP
rs73952545 1107 dbSNP
rs564052014 1108 dbSNP
rs991931867 1116 dbSNP
rs977925773 1121 dbSNP
rs13001699 1129 dbSNP
rs1034002759 1131 dbSNP
rs114097029 1133 dbSNP
rs968109537 1134 dbSNP
rs1244903797 1135 dbSNP
rs865818088 1140 dbSNP
rs991115756 1141 dbSNP
rs1159000828 1142 dbSNP
rs1379972312 1144 dbSNP
rs959305571 1154 dbSNP
rs1021925756 1156 dbSNP
rs1391454424 1157 dbSNP
rs755510725 1158 dbSNP
rs1009321120 1161 dbSNP
rs892195694 1167 dbSNP
rs1338042002 1174 dbSNP
rs1448030778 1178 dbSNP
rs1035122385 1180 dbSNP
rs886054741 1181 dbSNP
rs1346783434 1182 dbSNP
rs1303289047 1183 dbSNP
rs1031857099 1187 dbSNP
rs372575462 1199 dbSNP
rs535590543 1200 dbSNP
rs1025987840 1203 dbSNP
rs994299662 1205 dbSNP
rs1459017475 1220 dbSNP
rs750450058 1225 dbSNP
rs886054740 1226 dbSNP
rs1438070227 1229 dbSNP
rs1454086607 1231 dbSNP
rs10171700 1234 dbSNP
rs75155869 1248 dbSNP
rs1399315190 1251 dbSNP
rs1466567035 1253 dbSNP
rs1375075153 1257 dbSNP
rs534581644 1259 dbSNP
rs570435289 1261 dbSNP
rs766788164 1270 dbSNP
rs926593888 1273 dbSNP
rs1243494590 1275 dbSNP
rs1281874191 1280 dbSNP
rs1198840415 1285 dbSNP
rs1051127761 1288 dbSNP
rs1199119170 1293 dbSNP
rs1257203979 1303 dbSNP
rs1479729543 1310 dbSNP
rs933943915 1313 dbSNP
rs1022396786 1318 dbSNP
rs886054739 1319 dbSNP
rs987777418 1320 dbSNP
rs1423438391 1322 dbSNP
rs1185533619 1323 dbSNP
rs1425787951 1336 dbSNP
rs1478444653 1339 dbSNP
rs867857347 1342 dbSNP
rs1170673144 1343 dbSNP
rs1398735302 1347 dbSNP
rs1471184729 1353 dbSNP
rs147757790 1364 dbSNP
rs187951842 1366 dbSNP
rs1395050457 1371 dbSNP
rs1309961673 1380 dbSNP
rs1341771296 1384 dbSNP
rs570082808 1393 dbSNP
rs1218695350 1395 dbSNP
rs1277562582 1403 dbSNP
rs1213190988 1409 dbSNP
rs1235203097 1411 dbSNP
rs1256315882 1420 dbSNP
rs548388313 1420 dbSNP
rs915087368 1421 dbSNP
rs990650429 1423 dbSNP
rs1488698282 1427 dbSNP
rs1193003358 1435 dbSNP
rs1422170163 1440 dbSNP
rs959591022 1449 dbSNP
rs1177289053 1461 dbSNP
rs1377358545 1463 dbSNP
rs1343133441 1467 dbSNP
rs927895952 1474 dbSNP
rs1300774984 1477 dbSNP
rs1362056735 1484 dbSNP
rs981752056 1496 dbSNP
rs1297557765 1499 dbSNP
rs1297013056 1502 dbSNP
rs796414428 1507 dbSNP
rs898726152 1510 dbSNP
rs1301740250 1512 dbSNP
rs1311453273 1518 dbSNP
rs1230792830 1520 dbSNP
rs1038349688 1531 dbSNP
rs886054738 1535 dbSNP
rs1354659877 1540 dbSNP
rs1216016425 1546 dbSNP
rs950348930 1551 dbSNP
rs1261072074 1556 dbSNP
rs1286970464 1557 dbSNP
rs1489757225 1559 dbSNP
rs530251560 1561 dbSNP
rs1026040778 1572 dbSNP
rs1192223559 1579 dbSNP
rs1267256934 1581 dbSNP
rs1431867467 1583 dbSNP
rs994519313 1587 dbSNP
rs1176005698 1589 dbSNP
rs754846548 1592 dbSNP
rs1157557471 1593 dbSNP
rs10865025 1598 dbSNP
rs1017557584 1599 dbSNP
rs764446843 1601 dbSNP
rs548040744 1605 dbSNP
rs1056465311 1608 dbSNP
rs1377575136 1609 dbSNP
rs1384913952 1609 dbSNP
rs1311121343 1613 dbSNP
rs1007048609 1625 dbSNP
rs890040265 1634 dbSNP
rs1260077687 1637 dbSNP
rs1051307286 1644 dbSNP
rs926448622 1645 dbSNP
rs1222392638 1649 dbSNP
rs1265409653 1651 dbSNP
rs1184001467 1655 dbSNP
rs200168149 1657 dbSNP
rs1421268695 1667 dbSNP
rs182138755 1668 dbSNP
rs946638269 1675 dbSNP
rs565595816 1678 dbSNP
rs915148623 1682 dbSNP
rs1405344478 1685 dbSNP
rs1202649180 1686 dbSNP
rs1164839259 1691 dbSNP
rs545744696 1697 dbSNP
rs902486310 1698 dbSNP
rs1459775112 1703 dbSNP
rs1333124744 1706 dbSNP
rs987828286 1707 dbSNP
rs1042398708 1710 dbSNP
rs1307431830 1713 dbSNP
rs1228060830 1719 dbSNP
rs1229010868 1735 dbSNP
rs1312030477 1736 dbSNP
rs1320471457 1741 dbSNP
rs1325827715 1745 dbSNP
rs1018740359 1751 dbSNP
rs987227738 1756 dbSNP
rs1028928428 1759 dbSNP
rs953118893 1759 dbSNP
rs886054737 1761 dbSNP
rs996998421 1762 dbSNP
rs1413218516 1763 dbSNP
rs1181971308 1767 dbSNP
rs189855301 1774 dbSNP
rs1336247245 1777 dbSNP
rs1017125023 1780 dbSNP
rs187935909 1784 dbSNP
rs1450740062 1788 dbSNP
rs1326580342 1789 dbSNP
rs1361135460 1792 dbSNP
rs756408508 1798 dbSNP
rs1302335227 1799 dbSNP
rs1353576747 1806 dbSNP
rs368551221 1807 dbSNP
rs750606176 1812 dbSNP
rs1279436378 1813 dbSNP
rs866004644 1826 dbSNP
rs541552562 1831 dbSNP
rs574502076 1836 dbSNP
rs147877575 1838 dbSNP
rs981973048 1851 dbSNP
rs1443794247 1853 dbSNP
rs1166054722 1858 dbSNP
rs1445548945 1859 dbSNP
rs552720761 1866 dbSNP
rs1236523878 1868 dbSNP
rs1242938902 1870 dbSNP
rs1484442585 1873 dbSNP
rs1004052299 1879 dbSNP
rs540842456 1885 dbSNP
rs1424305628 1887 dbSNP
rs1181870301 1890 dbSNP
rs1440403866 1891 dbSNP
rs145115545 1896 dbSNP
rs200762071 1900 dbSNP
rs1175689609 1909 dbSNP
rs558429529 1909 dbSNP
rs973037587 1911 dbSNP
rs1401980488 1912 dbSNP
rs946552537 1913 dbSNP
rs75934517 1916 dbSNP
rs1338208250 1917 dbSNP
rs1340485747 1918 dbSNP
rs1429157425 1921 dbSNP
rs963490576 1922 dbSNP
rs915200979 1923 dbSNP
rs1346223517 1930 dbSNP
rs1219002338 1933 dbSNP
rs1017319187 1937 dbSNP
rs1007471031 1947 dbSNP
rs1249503801 1948 dbSNP
rs1345263135 1949 dbSNP
rs1218189704 1953 dbSNP
rs954213103 1954 dbSNP
rs150055772 1965 dbSNP
rs998466541 1969 dbSNP
rs1359815934 1970 dbSNP
rs902748572 1981 dbSNP
rs1042451601 1982 dbSNP
rs1450712707 1983 dbSNP
rs1010899371 1984 dbSNP
rs1248368029 1989 dbSNP
rs1478258750 1990 dbSNP
rs1171761285 1991 dbSNP
rs1393528986 1992 dbSNP
rs35846821 1995 dbSNP
rs1421713520 1998 dbSNP
rs1159333322 2003 dbSNP
rs893891277 2008 dbSNP
rs1399009783 2010 dbSNP
rs953263473 2012 dbSNP
rs921691592 2015 dbSNP
rs1436268689 2016 dbSNP
rs1301640768 2033 dbSNP
rs1368370108 2034 dbSNP
rs1055177501 2037 dbSNP
rs1286122639 2038 dbSNP
rs569939303 2040 dbSNP
rs1349398753 2041 dbSNP
rs1390854444 2053 dbSNP
rs1202846147 2056 dbSNP
rs1292004488 2057 dbSNP
rs1197946143 2075 dbSNP
rs1452064960 2075 dbSNP
rs115501541 2078 dbSNP
rs1201120732 2085 dbSNP
rs1179560831 2086 dbSNP
rs1305435011 2093 dbSNP
rs1019755858 2095 dbSNP
rs1379915571 2096 dbSNP
rs1468703780 2098 dbSNP
rs1385002307 2099 dbSNP
rs536329204 2107 dbSNP
rs1017022242 2111 dbSNP
rs1046204185 2112 dbSNP
rs1162108170 2117 dbSNP
rs1405248013 2122 dbSNP
rs1324304194 2123 dbSNP
rs1402830188 2125 dbSNP
rs1447963790 2128 dbSNP
rs929262251 2129 dbSNP
rs1334786150 2135 dbSNP
rs566201941 2141 dbSNP
rs1285413985 2147 dbSNP
rs111463955 2155 dbSNP
rs1182115191 2158 dbSNP
rs1212929441 2162 dbSNP
rs1271180549 2165 dbSNP
rs1436652878 2168 dbSNP
rs973484629 2177 dbSNP
rs1199008945 2180 dbSNP
rs547979348 2189 dbSNP
rs1224610258 2197 dbSNP
rs1034995068 2198 dbSNP
rs910310596 2201 dbSNP
rs1490511478 2203 dbSNP
rs1003531225 2204 dbSNP
rs1290714677 2214 dbSNP
rs985869211 2215 dbSNP
rs1163469471 2219 dbSNP
rs1466502920 2228 dbSNP
rs1045152205 2229 dbSNP
rs954598778 2239 dbSNP
rs1389259483 2244 dbSNP
rs1352596544 2245 dbSNP
rs532762971 2252 dbSNP
rs1011188944 2260 dbSNP
rs571924199 2274 dbSNP
rs550204580 2275 dbSNP
rs1232148564 2276 dbSNP
rs893651735 2276 dbSNP
rs1319882744 2279 dbSNP
rs976915843 2279 dbSNP
rs1219032174 2281 dbSNP
rs966985750 2282 dbSNP
rs543743909 2299 dbSNP
rs1238623385 2301 dbSNP
rs201862527 2306 dbSNP
rs202017304 2306 dbSNP
rs1485422980 2307 dbSNP
rs1285352750 2309 dbSNP
rs1021185059 2314 dbSNP
rs1406057677 2317 dbSNP
rs532074375 2317 dbSNP
rs1478413635 2322 dbSNP
rs1170421841 2337 dbSNP
rs935256053 2341 dbSNP
rs1011327951 2342 dbSNP
rs1318633836 2342 dbSNP
rs1301864518 2352 dbSNP
rs1413690282 2352 dbSNP
rs1310490272 2358 dbSNP
rs1294600174 2360 dbSNP
rs1342322952 2360 dbSNP
rs1402764989 2367 dbSNP
rs1235133083 2373 dbSNP
rs1256849985 2375 dbSNP
rs1288796635 2381 dbSNP
rs1386139626 2382 dbSNP
rs1208864346 2385 dbSNP
rs11680675 2386 dbSNP
rs893785281 2388 dbSNP
rs759552833 2390 dbSNP
rs1488914108 2393 dbSNP
rs1186508626 2395 dbSNP
rs1034194687 2396 dbSNP
rs1051897332 2396 dbSNP
rs1200001263 2397 dbSNP
rs1395329884 2397 dbSNP
rs1491538811 2397 dbSNP
rs1491110291 2399 dbSNP
rs1419756232 2400 dbSNP
rs1491423654 2400 dbSNP
rs544120059 2400 dbSNP
rs1359738850 2401 dbSNP
rs564142224 2401 dbSNP
rs1409123243 2402 dbSNP
rs1201002310 2403 dbSNP
rs1301675108 2404 dbSNP
rs1370540805 2405 dbSNP
rs1480708419 2407 dbSNP
rs1232298767 2408 dbSNP
rs540648913 2414 dbSNP
rs1478517 2426 dbSNP
rs1259536278 2429 dbSNP
rs1046246763 2431 dbSNP
rs1210841975 2431 dbSNP
rs555061424 2431 dbSNP
rs558155667 2435 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903831
Method / RBP HITS-CLIP / AGO
Cell line / Condition Human neurons / 124TD_shELAVL3_a
Location of target site NM_022336 | 3UTR | CUUGGCAUUUUCACA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161238
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000409271.1 | 3UTR | UUGGCAUUUUCACAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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