pre-miRNA Information
pre-miRNA hsa-mir-4480   
Genomic Coordinates chr10: 12578753 - 12578823
Description Homo sapiens miR-4480 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4480
Sequence 44| AGCCAAGUGGAAGUUACUUUA |64
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 10 + 12578796 23291724, 27587585 MiREDiBase
A-to-I 12 10 + 12578807 23291724, 27587585 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs929437808 7 dbSNP
rs1454494557 9 dbSNP
rs1345041659 17 dbSNP
rs561601367 21 dbSNP
Putative Targets

Gene Information
Gene Symbol VPS36   
Synonyms C13orf9, CGI-145, EAP45
Description vacuolar protein sorting 36 homolog
Transcript NM_016075   
Expression
Putative miRNA Targets on VPS36
3'UTR of VPS36
(miRNA target sites are highlighted)
>VPS36|NM_016075|3'UTR
   1 GGGTTTTGTATTTAAAATCCTTTTTGTCCATATGCTTGCGTCATGTAGAGGTTGTATGACATTGAGCTAAGAGATAAACC
  81 CCGATCAATTGAGAATTTATTGGAACTTCACAGTGCAATGTAAATCTCTTTTAATTTCTCACTAAATATGGTCCAGGAAA
 161 TTTATTTAGTATACGCATAGGAAAATTCAGAAAAGTGAATGCCAATATGAATTTAAAATCATGCTATAGTGCAGAACCCT
 241 CAGAGTTTAACTTGGAATATAGTGGATTTTAACTTGATCCTCAAATCTAATCATTTTATAAAGAAGGGAATTTAGTTTTG
 321 CAGAGAATAAAAAGAGAAGTTGCATGTTCAGACAGGTTAGATTATTATTTTGGTGTAACTGAAATTCACTGATTGCACAT
 401 GACAATGTTGGGACAAAATATACTGCAGCATGCTATATGAGGCTCCTCCCCAGGGCTTTTAGAAGCAGTCATAGACATGT
 481 CTTCAACATACCAAATAAAATACCTTTAAAAATGAAATAATTTTATTTGACACATATATTTATATATATTCTATCTAGTT
 561 TCTCTTTGTTTTTTTAAGTGATGATTTCATGACTGGCATTTAAAGAATGCAACTGTGTCATTTTGTTTCCAAATGCTGTG
 641 GATTTTGAAACTGAACTAGAGAGCTGTATAGACATGCCCAGAGTTATGATTACAAATTTAGGAGGTAGACGGCTCAGGAA
 721 TTCCCTGGGATTGTTGTGCTGGTGGAATGGCAGAGGGAACTTCACAGGAACCTTAGTGTTCTTTTACCTCAAAGCCACAG
 801 ACAGGAAATAGAAAGTGGAAAAGTAATATCTCCTTTTCTTTTCCATAAGGAGTTTCAACACTGAACTTTAAAAAGTCTAT
 881 CATATTCCAGCAATATTTTTTCTTTGTCCTTTATGTTGTAAGTTGTGTGGAAAAACTACTTCGGTAAGAAATGTTACTGA
 961 GATAACAACAACTGGCTAATACTGCATGTAGATTGCTTAGGTTTTAAAGTGACTGCCTGACTTCACATGTTATTGCTACA
1041 GCCTCCAGTATGTTCGCATTATCTCAAACTCAGGGACCCCACAGGACAGGAGACACCCTTTCTGAAACTGAGTTGGAAGT
1121 GAAAGGGTGGTGATGGTTTTGGCCAAGCCTGCGGGAGGGAAAGTATTGTATTGGGAGCACCCTTGGGACCAGGAAGAGGG
1201 ATGCCCAGGTTCACACTCTGGGACCCCTAAGACATTGTCAGTGGGTAAGGTGGAGGGCCACTGCCAGAGGCTGCTGCAGT
1281 GCCCTCTGGGAAGTGCCAGGGACCCTCAGCTGCAGACCCAGGGGATCCCAATCCCTTATCTCTGCCTGAAAAGTGGCTAT
1361 TGCTGCTTCGTATCCTCCAGTGTCACAGGAATGCTGTGCCTGAGACATCCCACTTTAGTTTTTGTTTTCCAAACCTGTCA
1441 CTGACTCTTCATTGTGGTGACAGATCCTCTGGTTCCCCCATTGCTCAGCCTCAGGTTTATTTTGAGGGTAACTCAGTGTC
1521 TGACTGCCCAAGTCTTTTAGGGGTTAGTTGGACCATTGTGTAAGCTTGTTTGTATGTCTCACCTCTTTCTGGTTGGTACT
1601 TACTGTCTCACACTGCTCTGGCAAACTTGTACACACACACACACTCTCTCTCTCTCTCACCTGGCTAAGGCTTTTAAAAT
1681 TATGAAGATAAATAATCTGTTTCACCAGCTGGAGTGAGTTGCAAGGAAGATTGCTGGAGCTACTCAATCTAGCGCTAATG
1761 GTTTGGATTCATTACTGCAAACCTACATAATTTAACATATTTGTTTACTTTAGTGTGACAACTGATGAAAAAAAATGGAG
1841 CAATCTGAATTGTATAAAATAACTTAAGAAGGAAGAAAAGTGATATATAAATATATTTTGCAAATGTCACATTAATTTAA
1921 AAATGAGTATGATTGATTTTATTTTTAAAGTGGGCATTCTTCACTGTTTCGAGACCTTTGTATGTATTTGTGTATTTTTA
2001 TCTTTTTTTTTCAGGCCATTATTATAAGGTGTTATTTTGGCCCTCTAATGTAGAAGTTATGTTTAAATACAACCAATCAG
2081 GCCCTAAGTGCAAAAAAGTTCTGTCTTGGTGCTTATCACTGGTATAATTATTATTTTTTTGTTTTCCTAACTTTGCTCTT
2161 AGGAGCATGAGCCTCTTTGTAGCTTTATGGTAATGCAATATTTCTGGTCATTTACTGTCAAAAAATTTTTTTACATTGTG
2241 TTAGTGAAGACTGTGTTTTCAGGGTTAAATGATTGGTATCAATGTATATAGAGTAAAATTATTGCAAAATTTAAAAATGA
2321 TTTTTCTTGGCATTCTTTTTAAATACTCTGAAACATATATGCAAATGAGAAACCTTTAATCATACTAAAGCCAGTTATGT
2401 TAAGAATTTTTCCTTTGGATTTTATAATTAAGAGTTGCTTATAAATACTTATGACATTGAGCTCTTACTGTTTTAGTTGT
2481 CTTAAAACAATGGGACATGTCATGAACTGGTTTCTTTTTTTAAAAAATTCTTGATGTGAATTCCACTGTTACCTGACCAT
2561 GTATATTCAGATGAATGTACTCTTTCTTGTTCCTTGTTACCAGATTAATCTGAGAGAATGTGGATTCATCCTGTCATCTT
2641 TCTCATACTCAAATACTTAAAATGGTTCTTTTGCCCAAAAGTCTCAGAGTCTTCATTTTGGTACAGTGGAGTCACAACTT
2721 GTAAGGTGGTTAGGTTTTAAAGACCGTGCCTAAGGACAAAATTGAGCATGCTCAGAATGGTCCTTGAAAATCTCCTAAAT
2801 TACCAATAAATTTCTCTTTGTAGTCTTAAAGTTTAAATCCCTGTGGAGTGATATGTAGGTATGAATATATTATGCTTATA
2881 TTAAGTACAAAAATACAAACTGCATATCAAGAGATTCTTATAGCATTAATAATTTCCATGCATGTGTCTTTTTCCAGTAG
2961 GTATGGTTGAATTTATGTAAATTTATTGCTAATCCCATCCCTTACGATCTAGAGTATAAGCTGCGCAAGGGCAGAAGTTT
3041 TTATCTGGTTTGTTCATGGATGTATTCTAAGAGCTGAGAACAGGGCCTGGACACAATAAGCATTCAATAAATATTTACTG
3121 AATGAATGAACTCCTACCTATATTCCTATTTATAATTTGGCTCCACTTTATCCTACTTTAGCTCCCATTCAATTCAATAA
3201 AAAAAACATTTTTTTGAACACATAGCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' auuucAUUGAAGGUGAACCGa 5'
               || :| : |:||||| 
Target 5' attccTATTTATAATTTGGCt 3'
3142 - 3162 132.00 -9.80
2
miRNA  3' auuucaUUGAAGGUGAACCga 5'
                :| ||: ||||||  
Target 5' ccctcaGAGTTTAACTTGGaa 3'
237 - 257 131.00 -9.30
3
miRNA  3' auUUCAUUGAAGGUGAACCGa 5'
            || |:| ||:: |||||| 
Target 5' aaAAATGA-TTTTTCTTGGCa 3'
2313 - 2332 130.00 -11.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN27004711 23 COSMIC
COSN30182179 26 COSMIC
COSN30459728 28 COSMIC
COSN30500073 38 COSMIC
COSN13444726 39 COSMIC
COSN27004710 40 COSMIC
COSN27004709 44 COSMIC
COSN31552372 51 COSMIC
COSN30143950 86 COSMIC
COSN31492669 90 COSMIC
COSN18737565 102 COSMIC
COSN31560107 106 COSMIC
COSN1612055 146 COSMIC
COSN30544858 151 COSMIC
COSN31553103 202 COSMIC
COSN7404230 243 COSMIC
COSN14958688 1369 COSMIC
COSN21017426 1516 COSMIC
COSN8130656 1643 COSMIC
COSN27441149 1644 COSMIC
COSN8130655 1645 COSMIC
COSN20143412 1712 COSMIC
COSN15911157 1826 COSMIC
COSN30331697 1828 COSMIC
COSN31960919 1954 COSMIC
COSN31542839 1955 COSMIC
COSN17076380 1970 COSMIC
COSN31532294 2091 COSMIC
COSN8340614 2192 COSMIC
COSN31526469 2218 COSMIC
COSN31530479 2228 COSMIC
COSN21289816 2358 COSMIC
COSN5191280 2608 COSMIC
COSN1612054 2717 COSMIC
COSN26748935 2746 COSMIC
COSN31548432 2814 COSMIC
COSN31528177 2859 COSMIC
COSN31779001 2885 COSMIC
COSN26547729 2913 COSMIC
COSN31543510 3005 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1430500318 1 dbSNP
rs1446325281 15 dbSNP
rs369935549 16 dbSNP
rs1207847701 18 dbSNP
rs1486110621 19 dbSNP
rs1471824266 21 dbSNP
rs776119057 23 dbSNP
rs764673286 26 dbSNP
rs746231851 30 dbSNP
rs1320150969 32 dbSNP
rs1456707318 32 dbSNP
rs1318285680 35 dbSNP
rs1386913251 37 dbSNP
rs375229564 39 dbSNP
rs554676994 40 dbSNP
rs200453598 43 dbSNP
rs1234515808 44 dbSNP
rs372220620 50 dbSNP
rs768160153 51 dbSNP
rs1336090716 57 dbSNP
rs1228372052 58 dbSNP
rs1259301178 71 dbSNP
rs1420182013 72 dbSNP
rs1206116408 79 dbSNP
rs953842941 82 dbSNP
rs1255663730 83 dbSNP
rs534442538 83 dbSNP
rs1190153776 87 dbSNP
rs1418744385 89 dbSNP
rs1028014517 93 dbSNP
rs1056335 102 dbSNP
rs962465633 106 dbSNP
rs761055064 112 dbSNP
rs775879204 114 dbSNP
rs772642985 118 dbSNP
rs1211733611 119 dbSNP
rs746014098 122 dbSNP
rs1015297297 124 dbSNP
rs779124330 135 dbSNP
rs896356908 139 dbSNP
rs1349381612 148 dbSNP
rs1407490392 153 dbSNP
rs1484909420 171 dbSNP
rs1017054406 174 dbSNP
rs546887961 175 dbSNP
rs749441132 176 dbSNP
rs1213356529 208 dbSNP
rs1344749577 215 dbSNP
rs115336219 225 dbSNP
rs559116922 226 dbSNP
rs1180123420 229 dbSNP
rs1252495042 237 dbSNP
rs1419669645 249 dbSNP
rs1175073234 259 dbSNP
rs1375769379 269 dbSNP
rs41292814 275 dbSNP
rs3196949 276 dbSNP
rs905844367 278 dbSNP
rs1369584532 279 dbSNP
rs1221388397 281 dbSNP
rs191169441 282 dbSNP
rs1301492315 286 dbSNP
rs1299391952 296 dbSNP
rs568195391 298 dbSNP
rs1392542510 314 dbSNP
rs116436227 316 dbSNP
rs1236981013 320 dbSNP
rs1281231346 321 dbSNP
rs1341725212 322 dbSNP
rs1014159367 326 dbSNP
rs1253201418 330 dbSNP
rs186055128 337 dbSNP
rs1480905582 339 dbSNP
rs866818911 342 dbSNP
rs893181993 343 dbSNP
rs536513807 351 dbSNP
rs1251095434 375 dbSNP
rs559450815 376 dbSNP
rs879453944 391 dbSNP
rs1194043801 398 dbSNP
rs1389101680 399 dbSNP
rs1427502187 403 dbSNP
rs1053202340 405 dbSNP
rs1354663604 407 dbSNP
rs1391390413 410 dbSNP
rs1174748717 413 dbSNP
rs1392932207 437 dbSNP
rs779969608 443 dbSNP
rs114095999 445 dbSNP
rs912776248 464 dbSNP
rs1213079668 471 dbSNP
rs1426933811 487 dbSNP
rs1051331656 488 dbSNP
rs1261196080 501 dbSNP
rs1187179299 504 dbSNP
rs1271131918 513 dbSNP
rs183192851 518 dbSNP
rs932948941 519 dbSNP
rs921529990 534 dbSNP
rs973742848 540 dbSNP
rs1201569965 544 dbSNP
rs962699227 546 dbSNP
rs908289722 565 dbSNP
rs982533457 575 dbSNP
rs1256347769 576 dbSNP
rs771992533 576 dbSNP
rs1235034666 588 dbSNP
rs563607879 591 dbSNP
rs1326968067 592 dbSNP
rs903893801 595 dbSNP
rs1388416025 596 dbSNP
rs1044193753 606 dbSNP
rs1429099987 608 dbSNP
rs1305402050 609 dbSNP
rs942831189 612 dbSNP
rs1290804690 621 dbSNP
rs543420406 625 dbSNP
rs1362938547 626 dbSNP
rs911361672 628 dbSNP
rs1051183504 629 dbSNP
rs960508426 633 dbSNP
rs1291589941 640 dbSNP
rs1294242018 647 dbSNP
rs1233880011 648 dbSNP
rs1435121600 656 dbSNP
rs771061988 668 dbSNP
rs1445031670 672 dbSNP
rs760440568 673 dbSNP
rs1242268052 686 dbSNP
rs1482760592 697 dbSNP
rs1185138725 704 dbSNP
rs934175535 710 dbSNP
rs1034844449 711 dbSNP
rs149073958 715 dbSNP
rs1002459359 724 dbSNP
rs969308992 733 dbSNP
rs1161743054 737 dbSNP
rs972961097 753 dbSNP
rs1447651680 755 dbSNP
rs1407355570 770 dbSNP
rs962688779 775 dbSNP
rs893176817 777 dbSNP
rs554283881 783 dbSNP
rs145006853 791 dbSNP
rs980245901 797 dbSNP
rs572050766 802 dbSNP
rs1372654040 803 dbSNP
rs1287577390 809 dbSNP
rs1171237510 811 dbSNP
rs998965397 824 dbSNP
rs1241323695 829 dbSNP
rs553529467 845 dbSNP
rs1311227187 856 dbSNP
rs1051238737 860 dbSNP
rs932833089 866 dbSNP
rs1014066088 874 dbSNP
rs1180843757 876 dbSNP
rs539687498 879 dbSNP
rs1039056555 901 dbSNP
rs570795361 908 dbSNP
rs1256679976 909 dbSNP
rs1201901601 910 dbSNP
rs955863835 912 dbSNP
rs866507541 924 dbSNP
rs758325932 925 dbSNP
rs1434311024 931 dbSNP
rs1479464054 937 dbSNP
rs1031592453 940 dbSNP
rs941032535 941 dbSNP
rs908239610 942 dbSNP
rs1000149607 943 dbSNP
rs1435343290 949 dbSNP
rs1328346456 957 dbSNP
rs903841047 962 dbSNP
rs1444349513 963 dbSNP
rs960415146 965 dbSNP
rs1228544883 973 dbSNP
rs1043758424 977 dbSNP
rs1231835819 980 dbSNP
rs1281948055 990 dbSNP
rs1348160904 995 dbSNP
rs1007320589 998 dbSNP
rs546692355 1014 dbSNP
rs1270344658 1015 dbSNP
rs1436557920 1016 dbSNP
rs1343724956 1020 dbSNP
rs1234001941 1026 dbSNP
rs1454074424 1027 dbSNP
rs528119845 1029 dbSNP
rs889848754 1035 dbSNP
rs1051134394 1038 dbSNP
rs528148712 1055 dbSNP
rs957340694 1056 dbSNP
rs1394468599 1057 dbSNP
rs1411757846 1081 dbSNP
rs1329399368 1096 dbSNP
rs1336561818 1098 dbSNP
rs867637941 1119 dbSNP
rs918793590 1121 dbSNP
rs1371262548 1127 dbSNP
rs1227280754 1129 dbSNP
rs1267866744 1144 dbSNP
rs1340794457 1147 dbSNP
rs190646095 1148 dbSNP
rs1274237598 1149 dbSNP
rs1468473874 1151 dbSNP
rs116574964 1152 dbSNP
rs186181699 1153 dbSNP
rs1192686015 1154 dbSNP
rs1359426037 1155 dbSNP
rs1371588651 1157 dbSNP
rs1476395242 1160 dbSNP
rs1168583125 1171 dbSNP
rs1417061690 1191 dbSNP
rs1459870836 1205 dbSNP
rs1327631577 1209 dbSNP
rs1395005675 1215 dbSNP
rs909520685 1217 dbSNP
rs528581453 1220 dbSNP
rs1030166208 1235 dbSNP
rs566079612 1242 dbSNP
rs764701024 1243 dbSNP
rs1383530499 1244 dbSNP
rs756971272 1246 dbSNP
rs181426865 1247 dbSNP
rs1232055846 1254 dbSNP
rs948401157 1255 dbSNP
rs753460280 1258 dbSNP
rs1335861546 1261 dbSNP
rs1204922921 1262 dbSNP
rs1259844497 1278 dbSNP
rs887372539 1283 dbSNP
rs1193985908 1285 dbSNP
rs530415948 1292 dbSNP
rs1368928775 1294 dbSNP
rs1256949062 1297 dbSNP
rs1412608073 1298 dbSNP
rs772031645 1298 dbSNP
rs1474171272 1300 dbSNP
rs149949299 1303 dbSNP
rs763749593 1304 dbSNP
rs1156604243 1305 dbSNP
rs1031539968 1312 dbSNP
rs980964138 1322 dbSNP
rs979071493 1324 dbSNP
rs532374010 1325 dbSNP
rs968641019 1328 dbSNP
rs772759726 1342 dbSNP
rs1352967818 1347 dbSNP
rs947911382 1348 dbSNP
rs1017952792 1356 dbSNP
rs139432807 1369 dbSNP
rs889788178 1375 dbSNP
rs1259409959 1380 dbSNP
rs1289037845 1389 dbSNP
rs1217681568 1393 dbSNP
rs1029698394 1399 dbSNP
rs1484707815 1400 dbSNP
rs1190155436 1403 dbSNP
rs1258065296 1406 dbSNP
rs989401031 1410 dbSNP
rs189048804 1415 dbSNP
rs1179362585 1427 dbSNP
rs1357688952 1432 dbSNP
rs1365375268 1446 dbSNP
rs532243533 1451 dbSNP
rs1172587160 1453 dbSNP
rs1373245452 1454 dbSNP
rs998257951 1471 dbSNP
rs1313018593 1485 dbSNP
rs1380524425 1492 dbSNP
rs1391362832 1493 dbSNP
rs530026796 1494 dbSNP
rs560895942 1502 dbSNP
rs1030944070 1503 dbSNP
rs977383128 1505 dbSNP
rs540717677 1508 dbSNP
rs561058997 1510 dbSNP
rs1213087724 1514 dbSNP
rs572099811 1515 dbSNP
rs1289363792 1517 dbSNP
rs558405808 1519 dbSNP
rs888673742 1526 dbSNP
rs879073391 1533 dbSNP
rs1045048734 1534 dbSNP
rs545969524 1543 dbSNP
rs1252622264 1546 dbSNP
rs1029741943 1549 dbSNP
rs1192789901 1551 dbSNP
rs997361322 1556 dbSNP
rs576998519 1559 dbSNP
rs557140098 1560 dbSNP
rs916954655 1565 dbSNP
rs992565917 1568 dbSNP
rs1460044268 1573 dbSNP
rs934423205 1578 dbSNP
rs537298423 1585 dbSNP
rs1399263149 1596 dbSNP
rs1447903499 1599 dbSNP
rs1005692325 1609 dbSNP
rs568705122 1611 dbSNP
rs887320329 1612 dbSNP
rs9536067 1615 dbSNP
rs1302277299 1618 dbSNP
rs978589578 1622 dbSNP
rs61958027 1628 dbSNP
rs760100653 1630 dbSNP
rs968965221 1643 dbSNP
rs1017483582 1645 dbSNP
rs140174538 1645 dbSNP
rs527363329 1645 dbSNP
rs748015039 1645 dbSNP
rs754069902 1645 dbSNP
rs986493457 1646 dbSNP
rs954037786 1650 dbSNP
rs1469515069 1652 dbSNP
rs147796681 1659 dbSNP
rs564899556 1659 dbSNP
rs754817308 1659 dbSNP
rs906231443 1659 dbSNP
rs1426150633 1663 dbSNP
rs774614389 1669 dbSNP
rs186187701 1684 dbSNP
rs1375270945 1688 dbSNP
rs1466660625 1693 dbSNP
rs1411030756 1695 dbSNP
rs1325629168 1701 dbSNP
rs749340994 1705 dbSNP
rs1182620143 1707 dbSNP
rs1473369156 1717 dbSNP
rs1266252193 1718 dbSNP
rs998205582 1719 dbSNP
rs1361545941 1722 dbSNP
rs1380592731 1730 dbSNP
rs1451635679 1732 dbSNP
rs1291376014 1734 dbSNP
rs1203955609 1745 dbSNP
rs1271220868 1746 dbSNP
rs566142023 1754 dbSNP
rs77368849 1759 dbSNP
rs1016103858 1766 dbSNP
rs1005683104 1770 dbSNP
rs1230561645 1775 dbSNP
rs935156441 1778 dbSNP
rs1263318165 1787 dbSNP
rs923822888 1797 dbSNP
rs888613488 1817 dbSNP
rs1282841164 1819 dbSNP
rs1437422873 1822 dbSNP
rs1332954257 1823 dbSNP
rs1316291675 1824 dbSNP
rs1398944918 1826 dbSNP
rs1387723489 1827 dbSNP
rs987422533 1828 dbSNP
rs1159649334 1835 dbSNP
rs199811930 1836 dbSNP
rs1044648503 1844 dbSNP
rs1290685895 1848 dbSNP
rs1190311027 1850 dbSNP
rs922621327 1853 dbSNP
rs181854004 1855 dbSNP
rs1357301112 1859 dbSNP
rs1248019371 1865 dbSNP
rs964451373 1868 dbSNP
rs1314728389 1872 dbSNP
rs949017870 1876 dbSNP
rs1446946215 1880 dbSNP
rs1485022464 1882 dbSNP
rs1249141164 1884 dbSNP
rs895467535 1885 dbSNP
rs1256011208 1909 dbSNP
rs1474098601 1924 dbSNP
rs74085776 1930 dbSNP
rs1407779832 1933 dbSNP
rs1005641434 1935 dbSNP
rs1160638524 1941 dbSNP
rs951582091 1942 dbSNP
rs1434120362 1947 dbSNP
rs746844671 1947 dbSNP
rs934327601 1954 dbSNP
rs924323638 1970 dbSNP
rs41292812 1971 dbSNP
rs375184362 1975 dbSNP
rs906186694 1981 dbSNP
rs1370863017 1984 dbSNP
rs1225266416 1986 dbSNP
rs1045098583 1995 dbSNP
rs769198676 2010 dbSNP
rs1262889211 2011 dbSNP
rs200727137 2012 dbSNP
rs1220088462 2019 dbSNP
rs1208097198 2024 dbSNP
rs947239819 2028 dbSNP
rs910410227 2033 dbSNP
rs1281891947 2040 dbSNP
rs1347388686 2041 dbSNP
rs893509937 2050 dbSNP
rs550004123 2052 dbSNP
rs1268494739 2070 dbSNP
rs1430033824 2073 dbSNP
rs1364399858 2074 dbSNP
rs986050925 2076 dbSNP
rs189521129 2086 dbSNP
rs1180912675 2098 dbSNP
rs1437149868 2103 dbSNP
rs1454048466 2109 dbSNP
rs1171806972 2115 dbSNP
rs747114122 2126 dbSNP
rs1404497462 2132 dbSNP
rs1442003283 2141 dbSNP
rs1415143815 2146 dbSNP
rs1053542922 2148 dbSNP
rs1352703611 2156 dbSNP
rs184728103 2160 dbSNP
rs143203427 2163 dbSNP
rs1369749567 2164 dbSNP
rs976690001 2165 dbSNP
rs139861420 2167 dbSNP
rs564920961 2170 dbSNP
rs1015637877 2173 dbSNP
rs921888965 2175 dbSNP
rs1272850681 2187 dbSNP
rs544671911 2198 dbSNP
rs1200904469 2205 dbSNP
rs1239211619 2207 dbSNP
rs1006087746 2214 dbSNP
rs1191926672 2215 dbSNP
rs1379597169 2216 dbSNP
rs964085373 2225 dbSNP
rs41292810 2226 dbSNP
rs909949648 2226 dbSNP
rs150523445 2228 dbSNP
rs1171099768 2229 dbSNP
rs543648180 2232 dbSNP
rs879090508 2235 dbSNP
rs1393396857 2237 dbSNP
rs1438479519 2243 dbSNP
rs896043863 2244 dbSNP
rs951531254 2253 dbSNP
rs1390228332 2265 dbSNP
rs1331341752 2270 dbSNP
rs778779269 2271 dbSNP
rs1003681785 2275 dbSNP
rs1327749767 2276 dbSNP
rs998484247 2276 dbSNP
rs902890907 2277 dbSNP
rs1212229092 2286 dbSNP
rs756735328 2291 dbSNP
rs191926349 2304 dbSNP
rs753326190 2317 dbSNP
rs910365464 2318 dbSNP
rs1240482174 2319 dbSNP
rs1050659227 2326 dbSNP
rs933165471 2349 dbSNP
rs923157547 2360 dbSNP
rs1417083724 2364 dbSNP
rs1444354802 2375 dbSNP
rs1459622664 2375 dbSNP
rs1390996417 2382 dbSNP
rs1271087121 2383 dbSNP
rs1315580639 2385 dbSNP
rs971957734 2391 dbSNP
rs1341780737 2395 dbSNP
rs1279328565 2397 dbSNP
rs1400110240 2397 dbSNP
rs554990125 2398 dbSNP
rs1243069758 2399 dbSNP
rs1267649961 2402 dbSNP
rs1268029448 2403 dbSNP
rs893508835 2404 dbSNP
rs1204724244 2405 dbSNP
rs535346747 2416 dbSNP
rs1053512715 2434 dbSNP
rs1489273340 2438 dbSNP
rs1299891318 2442 dbSNP
rs1194492343 2447 dbSNP
rs999303414 2451 dbSNP
rs1368880091 2452 dbSNP
rs367817882 2452 dbSNP
rs574195816 2452 dbSNP
rs149617054 2453 dbSNP
rs908570467 2456 dbSNP
rs190305146 2459 dbSNP
rs184641725 2460 dbSNP
rs386771041 2461 dbSNP
rs1311822742 2462 dbSNP
rs1428686220 2464 dbSNP
rs748761322 2468 dbSNP
rs1390316042 2476 dbSNP
rs1023062500 2483 dbSNP
rs1315465129 2486 dbSNP
rs13431 2488 dbSNP
rs549992011 2498 dbSNP
rs1356189589 2499 dbSNP
rs984157623 2501 dbSNP
rs1182825139 2504 dbSNP
rs1482221145 2505 dbSNP
rs930034549 2510 dbSNP
rs918690685 2514 dbSNP
rs192969112 2521 dbSNP
rs1204764791 2522 dbSNP
rs1179472000 2523 dbSNP
rs201412093 2528 dbSNP
rs999143713 2530 dbSNP
rs759939511 2535 dbSNP
rs1172455249 2538 dbSNP
rs1392670357 2540 dbSNP
rs1043137472 2545 dbSNP
rs1011258498 2552 dbSNP
rs888832555 2553 dbSNP
rs1220278660 2560 dbSNP
rs1329815014 2563 dbSNP
rs970929756 2571 dbSNP
rs1311873056 2575 dbSNP
rs775021168 2577 dbSNP
rs1050141615 2579 dbSNP
rs1024301795 2581 dbSNP
rs1310475151 2585 dbSNP
rs1228790353 2587 dbSNP
rs1256506347 2591 dbSNP
rs1480307885 2593 dbSNP
rs991108353 2604 dbSNP
rs1381142803 2624 dbSNP
rs1277545878 2627 dbSNP
rs141686798 2639 dbSNP
rs933114917 2644 dbSNP
rs1458065148 2658 dbSNP
rs901723828 2660 dbSNP
rs1370714320 2663 dbSNP
rs1031979364 2665 dbSNP
rs1309328314 2668 dbSNP
rs999195643 2690 dbSNP
rs1036228806 2701 dbSNP
rs1349840409 2707 dbSNP
rs1166158217 2715 dbSNP
rs1378713403 2733 dbSNP
rs1407553643 2736 dbSNP
rs902242450 2740 dbSNP
rs1406312172 2744 dbSNP
rs766851432 2745 dbSNP
rs762946157 2746 dbSNP
rs1365768418 2748 dbSNP
rs984499971 2755 dbSNP
rs80135460 2756 dbSNP
rs113413429 2758 dbSNP
rs1302122378 2765 dbSNP
rs116348993 2768 dbSNP
rs1197403897 2770 dbSNP
rs1216674627 2778 dbSNP
rs991613303 2784 dbSNP
rs769967041 2787 dbSNP
rs1318249963 2795 dbSNP
rs1212853885 2797 dbSNP
rs1263302941 2798 dbSNP
rs148761044 2800 dbSNP
rs1191236260 2807 dbSNP
rs1222295701 2814 dbSNP
rs1476565626 2821 dbSNP
rs1323432046 2824 dbSNP
rs73184401 2827 dbSNP
rs1426413265 2836 dbSNP
rs1466412420 2839 dbSNP
rs1164745547 2840 dbSNP
rs977649697 2846 dbSNP
rs1048342181 2854 dbSNP
rs531294449 2859 dbSNP
rs1294367970 2867 dbSNP
rs968009253 2870 dbSNP
rs929995415 2878 dbSNP
rs543587310 2885 dbSNP
rs574906428 2888 dbSNP
rs1366348121 2893 dbSNP
rs1293591557 2896 dbSNP
rs561546942 2921 dbSNP
rs1343890165 2922 dbSNP
rs1232450548 2923 dbSNP
rs1011621952 2934 dbSNP
rs1323121753 2956 dbSNP
rs1221783183 2958 dbSNP
rs888789852 2963 dbSNP
rs1486982011 2964 dbSNP
rs1028696453 2968 dbSNP
rs144349087 2976 dbSNP
rs901670087 2977 dbSNP
rs572702668 2984 dbSNP
rs1412018024 2992 dbSNP
rs867378867 2994 dbSNP
rs1425963066 3000 dbSNP
rs1165666040 3001 dbSNP
rs1268231024 3002 dbSNP
rs1192922796 3005 dbSNP
rs1036132118 3006 dbSNP
rs1246062376 3008 dbSNP
rs187549606 3012 dbSNP
rs539077098 3024 dbSNP
rs144068104 3025 dbSNP
rs931306107 3027 dbSNP
rs915949168 3037 dbSNP
rs966396173 3043 dbSNP
rs1241647466 3053 dbSNP
rs1286172156 3056 dbSNP
rs1485074076 3057 dbSNP
rs991559868 3059 dbSNP
rs1301378276 3060 dbSNP
rs1484409400 3065 dbSNP
rs112697116 3066 dbSNP
rs1379915607 3067 dbSNP
rs997314702 3071 dbSNP
rs192507841 3081 dbSNP
rs1380942335 3093 dbSNP
rs567317326 3100 dbSNP
rs1436437901 3107 dbSNP
rs770902058 3108 dbSNP
rs1360838887 3117 dbSNP
rs887670769 3118 dbSNP
rs1297456720 3119 dbSNP
rs1047649432 3126 dbSNP
rs1241810642 3127 dbSNP
rs1335141003 3128 dbSNP
rs1309577184 3131 dbSNP
rs1465739380 3132 dbSNP
rs372252769 3147 dbSNP
rs1216983467 3180 dbSNP
rs967577437 3187 dbSNP
rs1277104463 3194 dbSNP
rs748810511 3199 dbSNP
rs1022254801 3206 dbSNP
rs1046911745 3207 dbSNP
rs202218230 3207 dbSNP
rs754104381 3207 dbSNP
rs949465961 3208 dbSNP
rs916656297 3209 dbSNP
rs990455297 3214 dbSNP
rs1055276956 3216 dbSNP
rs1415022936 3216 dbSNP
rs953153360 3220 dbSNP
rs1028643909 3221 dbSNP
rs997158023 3222 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000378060.4 | 3UTR | UUGGCAUUCUUUUUAAAUAC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
117 hsa-miR-4480 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT056040 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT091259 FXR1 FMR1 autosomal homolog 1 2 4
MIRT117347 MAPRE2 microtubule associated protein RP/EB family member 2 2 2
MIRT234960 ZNF439 zinc finger protein 439 2 4
MIRT441356 ZNF75A zinc finger protein 75a 2 2
MIRT441426 STXBP2 syntaxin binding protein 2 2 2
MIRT441455 ZNF488 zinc finger protein 488 2 4
MIRT441524 ZBTB10 zinc finger and BTB domain containing 10 2 2
MIRT441576 EXOC5 exocyst complex component 5 2 2
MIRT441597 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT441610 ATP13A4 ATPase 13A4 2 2
MIRT441698 CIT citron rho-interacting serine/threonine kinase 2 2
MIRT441714 FGF9 fibroblast growth factor 9 2 2
MIRT441784 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT441795 EXOSC2 exosome component 2 2 2
MIRT441868 RNASEL ribonuclease L 2 2
MIRT441900 SLC9A8 solute carrier family 9 member A8 2 6
MIRT441919 FAM217B family with sequence similarity 217 member B 2 2
MIRT441928 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT441938 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT442157 DPY19L1 dpy-19 like C-mannosyltransferase 1 2 2
MIRT442172 AZF1 azoospermia factor 1 2 2
MIRT442208 IRS1 insulin receptor substrate 1 2 2
MIRT442237 DDX19A DEAD-box helicase 19A 2 2
MIRT442366 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like 2 2
MIRT442572 SDC1 syndecan 1 2 2
MIRT442604 ZNF391 zinc finger protein 391 2 2
MIRT442609 MRC1 mannose receptor C-type 1 2 2
MIRT442647 POP4 POP4 homolog, ribonuclease P/MRP subunit 2 2
MIRT442658 OIP5 Opa interacting protein 5 2 6
MIRT442686 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT442773 JAG1 jagged 1 2 2
MIRT442785 CHD8 chromodomain helicase DNA binding protein 8 2 2
MIRT442895 PLCB3 phospholipase C beta 3 2 2
MIRT442941 C17orf105 chromosome 17 open reading frame 105 2 2
MIRT442959 SGCD sarcoglycan delta 2 2
MIRT442998 EDAR ectodysplasin A receptor 2 2
MIRT443017 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443064 CASP5 caspase 5 2 2
MIRT443069 ABLIM1 actin binding LIM protein 1 2 2
MIRT443208 VPS36 vacuolar protein sorting 36 homolog 2 2
MIRT443237 ANKRD26 ankyrin repeat domain 26 2 2
MIRT443253 A1CF APOBEC1 complementation factor 2 2
MIRT443329 JUN Jun proto-oncogene, AP-1 transcription factor subunit 2 2
MIRT443333 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT443349 STX7 syntaxin 7 2 2
MIRT443452 CLIC5 chloride intracellular channel 5 2 2
MIRT443547 GPR35 G protein-coupled receptor 35 2 2
MIRT443616 AVPR1A arginine vasopressin receptor 1A 2 2
MIRT443626 CPSF2 cleavage and polyadenylation specific factor 2 2 2
MIRT443730 ALPK3 alpha kinase 3 2 2
MIRT443786 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443852 RGS6 regulator of G protein signaling 6 2 2
MIRT445483 KLF5 Kruppel like factor 5 2 2
MIRT471105 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472329 NETO2 neuropilin and tolloid like 2 2 4
MIRT472391 NDRG3 NDRG family member 3 2 2
MIRT473522 MAX MYC associated factor X 2 2
MIRT473874 MAFK MAF bZIP transcription factor K 2 6
MIRT476021 GTF2A1 general transcription factor IIA subunit 1 2 2
MIRT478320 DDN dendrin 2 2
MIRT492049 TNFSF9 TNF superfamily member 9 2 2
MIRT494851 ANKRD24 ankyrin repeat domain 24 2 2
MIRT494991 TSSC1 EARP complex and GARP complex interacting protein 1 2 2
MIRT495034 RASSF2 Ras association domain family member 2 2 2
MIRT495111 NOL10 nucleolar protein 10 2 2
MIRT495113 TRADD TNFRSF1A associated via death domain 2 2
MIRT495131 METTL24 methyltransferase like 24 2 2
MIRT495147 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT495297 NUP54 nucleoporin 54 2 2
MIRT495341 RTN2 reticulon 2 2 2
MIRT495347 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT496682 DUSP18 dual specificity phosphatase 18 2 2
MIRT496743 TGFBR1 transforming growth factor beta receptor 1 2 2
MIRT496841 KCNIP2 potassium voltage-gated channel interacting protein 2 2 2
MIRT496852 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496889 FOXP1 forkhead box P1 2 2
MIRT496922 CLMN calmin 2 2
MIRT496990 TMEM231 transmembrane protein 231 2 2
MIRT497002 SNAP25 synaptosome associated protein 25 2 2
MIRT497058 C6orf223 chromosome 6 open reading frame 223 2 2
MIRT500529 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 6
MIRT506048 PPP6C protein phosphatase 6 catalytic subunit 2 4
MIRT512163 CD164 CD164 molecule 2 6
MIRT527051 RDH13 retinol dehydrogenase 13 2 2
MIRT532282 TNFSF14 TNF superfamily member 14 2 2
MIRT534083 SPRY4 sprouty RTK signaling antagonist 4 2 2
MIRT534605 RNASEH1 ribonuclease H1 2 4
MIRT539509 ACSS3 acyl-CoA synthetase short chain family member 3 2 2
MIRT543069 ARID4B AT-rich interaction domain 4B 2 2
MIRT544233 CCBL2 kynurenine aminotransferase 3 2 2
MIRT544686 ZNF224 zinc finger protein 224 2 4
MIRT546269 TMEM30A transmembrane protein 30A 2 4
MIRT559069 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT562768 RMI2 RecQ mediated genome instability 2 2 2
MIRT563974 HCFC1 host cell factor C1 2 2
MIRT564086 NSA2 NSA2, ribosome biogenesis homolog 2 2
MIRT564525 PDXP pyridoxal phosphatase 2 2
MIRT564613 ZNF703 zinc finger protein 703 2 2
MIRT566252 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT614420 ZNF440 zinc finger protein 440 2 2
MIRT618789 MTHFR methylenetetrahydrofolate reductase 2 2
MIRT619160 PPDPF pancreatic progenitor cell differentiation and proliferation factor 2 2
MIRT641778 ZDHHC7 zinc finger DHHC-type containing 7 2 4
MIRT653680 SLC25A36 solute carrier family 25 member 36 2 2
MIRT657861 GJD2 gap junction protein delta 2 2 2
MIRT660879 ADCYAP1R1 ADCYAP receptor type I 2 2
MIRT668781 DAAM1 dishevelled associated activator of morphogenesis 1 2 4
MIRT688559 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT695393 WDR41 WD repeat domain 41 2 2
MIRT698680 TCEA1 transcription elongation factor A1 2 2
MIRT700974 PDIA6 protein disulfide isomerase family A member 6 2 2
MIRT705055 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705864 AFF1 AF4/FMR2 family member 1 2 2
MIRT710586 CDCA4 cell division cycle associated 4 2 2
MIRT713904 IGF2R insulin like growth factor 2 receptor 2 2
MIRT717133 SKI SKI proto-oncogene 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-4480 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)

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