miRTarBase - #MIRT443464


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pre-miRNA Information
pre-miRNA hsa-mir-548s   
Genomic Coordinates chr2: 11767444 - 11767525
Description Homo sapiens miR-548s stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-548s
Sequence 52| AUGGCCAAAACUGCAGUUAUUUU |74
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 1 2 + 11767495 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1187825186 1 dbSNP
rs1161985266 4 dbSNP
rs1476642595 6 dbSNP
rs772377981 6 dbSNP
rs1427306684 19 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ACPP   
Synonyms 5'-NT, ACP-3, ACP3
Description acid phosphatase, prostate
Transcript NM_001099   
Other Transcripts NM_001134194   
Expression
Putative miRNA Targets on ACPP
3'UTR of ACPP
(miRNA target sites are highlighted)		 
>ACPP|NM_001099|3'UTR
   1 TGTGCACAGAGATCTCTGTAGAAGGAGTAGCTGCCCTTTCTCAGGGCAGATGATGCTTTGAGAACATACTTTGGCCATTA
  81 CCCCCAGCTTTGAGGAAAATGGGCTTTGGATGATTATTTTATGTTTTAGGGACCCCCAACCTCAGGCAATTCCTACCTCT
 161 TCACCTGACCCTGCCCCCACTTGCCATAAAACTTAGCTAAGTTTTGTTTTGTTTTTCAGCGTTAATGTAAAGGGGCAGCA
 241 GTGCCAAAATATAATCAGAGATAAAGCTTAGGTCAAAGTTCATAGAGTTCCCATGAACTATATGACTGGCCACACAGGAT
 321 CTTTTGTATTTAAGGATTCTGAGATTTTGCTTGAGCAGGATTAGATAAGGCTGTTCTTTAAATGTCTGAAATGGAACAGA
 401 TTTCAAAAAAAAACCCCACAATCTAGGATGGGAACAAGGAAGGAAAGATGTGAATAGGCTGATGGGCAAAAAACCAATTT
 481 ACCCATCAGTTCCAGCCTTCTCTCAAGGAGAGGCAAAGAAAGGAGATACAGTGGAGACATCTGGAAAGTTTTCTCCACTG
 561 GAAAACTGCTACTATCTGTTTTTATATTTCTGTTAAAATATATGAGGCTACAGAACTAAAAATTAAAACCTCTTTGTGTC
 641 CCTTGGTCCTGGAACATTTATGTTCCTTTTAAAGAAACAAAAATCAAACTTTACAGAAAGATTTGATGTATGTAATACAT
 721 ATAGCAGCTCTTGAAGTATATATATCATAGCAAATAAGTCATCTGATGAGAACAAGCTATTTGGGCACAACACATCAGGA
 801 AAGAGAGCACCACGTGATGGAGTTTCTCTAGAAGCTCCAGTGATAAGAGATGTTGACTCTAAAGTTGATTTAAGGCCAGG
 881 CATGGTGGTTTACGCCTATAATCCCAGCATTTTGGGAGTCCGAGGTGGGCAGATCACTTGAGCTCAGGAGGTCAAGATCA
 961 GCCTGGGCAACATGGTGAAACCTGGTCTCTACATAAAATACAAAAACTTAGATGGGCATGGTGGTGTGTGCCTATAGTCC
1041 CACTACTTGTGGGGCTAAGGCAGGAGGATCACTTGAGCCCCGGAGGTCGAGGCTACAGTGAGCCAAGAGTGCACTACTGT
1121 ACTCCAGCCAGGGCAAGAGAGCGAGACCCTGTCTCAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
1201 AAACAAAGTTGATTAAGAAAGGAAGTATAGGCCAGGCACAGTGGCTCACACCTGTAATCCTTGCATTTTGGAAGGCTGAG
1281 GCAGGAGGATCACTTTAGGCCTGGTGTGTTCAAGACCAGCCTGGTCAACATAGTGAGACACTGTCTCTACCAAAAAAAGG
1361 AAGGAAGGGACACATATCAAACTGAAACAAAATTAGAAATGTAATTATGTTCTAAGTGCCTCCAAGTTCAAAACTTATTG
1441 GAATGTTGAGAGTGTGGTTACGAAATACGTTAGGAGGACAAAAGGAATGTGTAAGTCTTTAATGCCGATATCTTCAGAAA
1521 ACCTAAGCAAACTTACAGGTCCTGCTGAAACTGCCCACTCTGCAAGAAGAAATCATGATATAGCTTTGCCATGTGGCAGA
1601 TCTACATGTCTAGAGAACACTGTGCTCTATTACCATTATGGATAAAGATGAGATGGTTTCTAGAGATGGTTTCTACTGGC
1681 TGCCAGAATCTAGAGCAAAGCCATCCCCGCTCCTGGTTGGTCACAGAATGACTGACAAAGACATCGATTGATATGCTTCT
1761 TTGTGTTATTTCCCTCCCAAGTAAATGTTTGTCCTTGGGTCCATTTTCTATGCTTGTAACTGTCTTCTAGCAGTGAGCCA
1841 AATGTAAAATAGTGAATAAAGTCATTATTAGGAAGTTCAAAAGCATTGCTTTTATAATGAACTTAGAAAAACGTATGTGT
1921 GTGTGTTTAATTAGAATAAAATTCCTCTAGGCAGATTTCAGGAGCTCCAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuUUAUUG-ACGUCAAAACCGGUa 5'
            :| ||| | |   |||||||| 
Target 5' ttGAGAACATAC---TTTGGCCAt 3'
 58 - 78 150.00 -11.30
2 
miRNA  3' uuUUAUUGACGUCAAAACCGGUa 5'
            || ||  | ||| | ||||| 
Target 5' ttAAGAAAGGAAGTATAGGCCAg 3'
 1213 - 1235 133.00 -8.50
3 
miRNA  3' uuuuauUGACGUCAAAACCGGUa 5'
                :|| | |  ||||:|| 
Target 5' atccccGCTCCTG-GTTGGTCAc 3'
 1703 - 1724 128.00 -7.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26727670 25 COSMIC
COSN30484846 26 COSMIC
COSN30524761 27 COSMIC
COSN30453355 37 COSMIC
COSN30167242 45 COSMIC
COSN30176465 75 COSMIC
COSN30510688 88 COSMIC
COSN27647049 140 COSMIC
COSN31528339 158 COSMIC
COSN30167250 201 COSMIC
COSN20896693 221 COSMIC
COSN7818010 245 COSMIC
COSN31565276 405 COSMIC
COSN14589775 415 COSMIC
COSN14814491 454 COSMIC
COSN18298974 511 COSMIC
COSN16205045 1031 COSMIC
COSN26043309 1204 COSMIC
COSN4997832 1207 COSMIC
COSN1267721 1264 COSMIC
COSN20069111 1359 COSMIC
COSN9237427 1404 COSMIC
COSN32079625 1472 COSMIC
COSN24407481 1683 COSMIC
COSN29313020 1761 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs150662127 2 dbSNP
rs752360156 6 dbSNP
rs1431518620 7 dbSNP
rs757989402 8 dbSNP
rs1484513730 10 dbSNP
rs1184659703 11 dbSNP
rs7625966 22 dbSNP
rs1042330 25 dbSNP
rs1190692284 30 dbSNP
rs1169613563 31 dbSNP
rs1420344787 32 dbSNP
rs756608663 35 dbSNP
rs1174003267 37 dbSNP
rs73215937 38 dbSNP
rs547310027 48 dbSNP
rs754061450 51 dbSNP
rs1186629252 55 dbSNP
rs562221924 66 dbSNP
rs1242249524 73 dbSNP
rs919953708 78 dbSNP
rs1307050245 91 dbSNP
rs931284152 93 dbSNP
rs1049026131 94 dbSNP
rs886328247 110 dbSNP
rs529510064 112 dbSNP
rs1050273091 113 dbSNP
rs1462994081 121 dbSNP
rs1264153922 123 dbSNP
rs779314422 132 dbSNP
rs140893577 138 dbSNP
rs1482078689 171 dbSNP
rs1260206040 175 dbSNP
rs1000144114 176 dbSNP
rs144839895 177 dbSNP
rs1282430276 178 dbSNP
rs756958439 184 dbSNP
rs1450134219 187 dbSNP
rs1383365796 189 dbSNP
rs1330456380 203 dbSNP
rs1242953586 207 dbSNP
rs892028795 211 dbSNP
rs1458569333 212 dbSNP
rs1181028886 220 dbSNP
rs1001324523 221 dbSNP
rs1804138 222 dbSNP
rs758606177 224 dbSNP
rs1024448640 227 dbSNP
rs1418575326 231 dbSNP
rs1176960182 235 dbSNP
rs1379534128 244 dbSNP
rs780219198 254 dbSNP
rs1464757532 261 dbSNP
rs1178451550 265 dbSNP
rs1244245783 265 dbSNP
rs1011171426 283 dbSNP
rs1020504091 301 dbSNP
rs1205485789 307 dbSNP
rs1335777184 308 dbSNP
rs971992856 311 dbSNP
rs967618406 314 dbSNP
rs746959450 319 dbSNP
rs1360113495 326 dbSNP
rs750271426 331 dbSNP
rs979839283 337 dbSNP
rs551484240 339 dbSNP
rs372784570 346 dbSNP
rs557576163 367 dbSNP
rs1376141923 369 dbSNP
rs1042332 371 dbSNP
rs1298466231 373 dbSNP
rs951811819 374 dbSNP
rs964548257 378 dbSNP
rs1042333 385 dbSNP
rs189681210 389 dbSNP
rs940587315 394 dbSNP
rs1158563092 398 dbSNP
rs919984804 398 dbSNP
rs779847996 400 dbSNP
rs1232105454 401 dbSNP
rs1438305415 405 dbSNP
rs759194452 405 dbSNP
rs1178080513 414 dbSNP
rs181128421 414 dbSNP
rs1042334 415 dbSNP
rs1224871816 421 dbSNP
rs564956128 422 dbSNP
rs1490529781 424 dbSNP
rs907794942 427 dbSNP
rs309995 429 dbSNP
rs1237874345 437 dbSNP
rs147525822 440 dbSNP
rs1307463600 444 dbSNP
rs1218382593 447 dbSNP
rs1480601862 448 dbSNP
rs907062872 453 dbSNP
rs889849966 457 dbSNP
rs2239698 475 dbSNP
rs1431557693 476 dbSNP
rs1054378135 512 dbSNP
rs555974908 513 dbSNP
rs1359348506 540 dbSNP
rs186013868 543 dbSNP
rs1295740784 544 dbSNP
rs1804127 548 dbSNP
rs1418427860 558 dbSNP
rs1160328171 568 dbSNP
rs769611339 573 dbSNP
rs1432936744 576 dbSNP
rs1423388076 585 dbSNP
rs140195846 587 dbSNP
rs772909078 608 dbSNP
rs1480847241 613 dbSNP
rs1262585683 632 dbSNP
rs1424688046 646 dbSNP
rs1466979126 657 dbSNP
rs1486822892 666 dbSNP
rs1393324073 679 dbSNP
rs1261203557 681 dbSNP
rs1168288710 693 dbSNP
rs1209219877 695 dbSNP
rs1310207194 697 dbSNP
rs1011201158 698 dbSNP
rs891805280 703 dbSNP
rs1223757248 705 dbSNP
rs1339385390 707 dbSNP
rs559882805 709 dbSNP
rs1275787063 713 dbSNP
rs1383377752 717 dbSNP
rs1353787509 718 dbSNP
rs1458376097 726 dbSNP
rs1387829643 729 dbSNP
rs762588641 731 dbSNP
rs1289945170 742 dbSNP
rs1465911229 743 dbSNP
rs1010447636 744 dbSNP
rs1019949763 748 dbSNP
rs1178953541 749 dbSNP
rs1024995294 750 dbSNP
rs1423134203 755 dbSNP
rs907338091 765 dbSNP
rs902842089 777 dbSNP
rs1294725157 778 dbSNP
rs534475776 781 dbSNP
rs1008510092 784 dbSNP
rs1262410596 786 dbSNP
rs1020267871 787 dbSNP
rs1482197652 798 dbSNP
rs572015722 806 dbSNP
rs1204008379 808 dbSNP
rs1364850496 812 dbSNP
rs1385774134 814 dbSNP
rs765876801 815 dbSNP
rs1027079468 821 dbSNP
rs1311300832 822 dbSNP
rs14192 830 dbSNP
rs1220788636 831 dbSNP
rs1256569704 842 dbSNP
rs982861019 843 dbSNP
rs1339136302 846 dbSNP
rs1222916969 855 dbSNP
rs1804126 865 dbSNP
rs149980810 875 dbSNP
rs369547523 881 dbSNP
rs929252083 882 dbSNP
rs1463654709 883 dbSNP
rs542530466 886 dbSNP
rs1164146717 889 dbSNP
rs188916832 891 dbSNP
rs1487542277 894 dbSNP
rs928516546 895 dbSNP
rs1264097203 900 dbSNP
rs1478926980 901 dbSNP
rs1184019139 909 dbSNP
rs1457140025 913 dbSNP
rs1236046874 917 dbSNP
rs1126658 919 dbSNP
rs1197184386 922 dbSNP
rs11710175 923 dbSNP
rs1418555184 946 dbSNP
rs962033986 947 dbSNP
rs1126659 952 dbSNP
rs1357978764 968 dbSNP
rs533260678 982 dbSNP
rs892971926 983 dbSNP
rs1804136 985 dbSNP
rs1041437183 994 dbSNP
rs1327193959 1000 dbSNP
rs1393375582 1005 dbSNP
rs1348125247 1009 dbSNP
rs1397419850 1019 dbSNP
rs1423442783 1022 dbSNP
rs902873913 1024 dbSNP
rs1126660 1025 dbSNP
rs1041313407 1031 dbSNP
rs900048888 1035 dbSNP
rs925152526 1048 dbSNP
rs1378263565 1052 dbSNP
rs765680525 1053 dbSNP
rs1438075137 1061 dbSNP
rs1027194726 1068 dbSNP
rs952848275 1082 dbSNP
rs368290611 1083 dbSNP
rs1361657755 1086 dbSNP
rs1353544969 1087 dbSNP
rs1229315454 1090 dbSNP
rs1016074428 1094 dbSNP
rs946050231 1097 dbSNP
rs1323121462 1101 dbSNP
rs1045757530 1108 dbSNP
rs970769812 1112 dbSNP
rs1221756471 1114 dbSNP
rs982491080 1120 dbSNP
rs1489365867 1124 dbSNP
rs928575537 1138 dbSNP
rs1214699156 1143 dbSNP
rs958656988 1144 dbSNP
rs1340057274 1154 dbSNP
rs1470377071 1154 dbSNP
rs145212565 1155 dbSNP
rs1221918710 1156 dbSNP
rs1347562744 1156 dbSNP
rs370635160 1156 dbSNP
rs530394249 1156 dbSNP
rs537521424 1156 dbSNP
rs563006412 1156 dbSNP
rs755490700 1156 dbSNP
rs774292936 1156 dbSNP
rs777705181 1156 dbSNP
rs914435879 1156 dbSNP
rs758638758 1158 dbSNP
rs1411465456 1162 dbSNP
rs1443940211 1164 dbSNP
rs1320192016 1166 dbSNP
rs1343408803 1166 dbSNP
rs1158685820 1174 dbSNP
rs1401139590 1176 dbSNP
rs1381597909 1182 dbSNP
rs1417362008 1184 dbSNP
rs1317186921 1186 dbSNP
rs1359438151 1188 dbSNP
rs879608200 1190 dbSNP
rs758508644 1192 dbSNP
rs1381172610 1194 dbSNP
rs747147098 1195 dbSNP
rs947205145 1195 dbSNP
rs1245916964 1196 dbSNP
rs1470765920 1196 dbSNP
rs1055940465 1198 dbSNP
rs1192351076 1198 dbSNP
rs1310693036 1198 dbSNP
rs145366277 1199 dbSNP
rs9289427 1199 dbSNP
rs1406426477 1201 dbSNP
rs1454349005 1201 dbSNP
rs68002697 1201 dbSNP
rs202070207 1202 dbSNP
rs1169503595 1203 dbSNP
rs1005952770 1204 dbSNP
rs57884203 1204 dbSNP
rs1167935237 1205 dbSNP
rs1476043493 1209 dbSNP
rs1041467658 1210 dbSNP
rs780305977 1213 dbSNP
rs1283812212 1233 dbSNP
rs1126661 1234 dbSNP
rs943726194 1239 dbSNP
rs376736034 1248 dbSNP
rs1182178817 1250 dbSNP
rs1462922050 1251 dbSNP
rs1244045022 1264 dbSNP
rs1041069975 1275 dbSNP
rs1211898534 1276 dbSNP
rs961850420 1280 dbSNP
rs899495228 1283 dbSNP
rs1454433212 1286 dbSNP
rs1383257602 1287 dbSNP
rs1460739965 1288 dbSNP
rs1179141775 1290 dbSNP
rs1240019126 1291 dbSNP
rs755055574 1294 dbSNP
rs1355878186 1298 dbSNP
rs1328990541 1302 dbSNP
rs1404215407 1302 dbSNP
rs1030037614 1317 dbSNP
rs1446901358 1318 dbSNP
rs1157495280 1331 dbSNP
rs1425351708 1341 dbSNP
rs567207684 1348 dbSNP
rs997134028 1350 dbSNP
rs953410057 1351 dbSNP
rs1178625973 1352 dbSNP
rs986019135 1366 dbSNP
rs529581127 1367 dbSNP
rs1289592978 1368 dbSNP
rs772357078 1369 dbSNP
rs1248092311 1371 dbSNP
rs888638585 1372 dbSNP
rs1306055910 1378 dbSNP
rs1221825564 1384 dbSNP
rs1004358598 1385 dbSNP
rs957882991 1394 dbSNP
rs990163669 1396 dbSNP
rs1332627455 1401 dbSNP
rs10115 1408 dbSNP
rs1379839852 1420 dbSNP
rs1304371438 1427 dbSNP
rs775761918 1439 dbSNP
rs1015690006 1451 dbSNP
rs1345933293 1462 dbSNP
rs971183742 1463 dbSNP
rs1480196756 1469 dbSNP
rs570964378 1470 dbSNP
rs1261538908 1472 dbSNP
rs1224755491 1480 dbSNP
rs1322552067 1483 dbSNP
rs865885804 1489 dbSNP
rs1337220770 1491 dbSNP
rs1387544795 1492 dbSNP
rs1034132595 1494 dbSNP
rs16839134 1497 dbSNP
rs1299312517 1502 dbSNP
rs991391021 1507 dbSNP
rs549700839 1508 dbSNP
rs1284680629 1511 dbSNP
rs779110364 1523 dbSNP
rs1314536800 1524 dbSNP
rs1006382789 1530 dbSNP
rs1452171461 1536 dbSNP
rs538486055 1557 dbSNP
rs1463785848 1559 dbSNP
rs1804131 1562 dbSNP
rs1210855785 1563 dbSNP
rs1242952288 1564 dbSNP
rs924387952 1565 dbSNP
rs1189601891 1566 dbSNP
rs569431522 1567 dbSNP
rs13131 1571 dbSNP
rs1804129 1572 dbSNP
rs1427343912 1573 dbSNP
rs897568340 1574 dbSNP
rs943823954 1577 dbSNP
rs1480795736 1578 dbSNP
rs1261031546 1579 dbSNP
rs748313487 1580 dbSNP
rs1030377182 1581 dbSNP
rs976520343 1589 dbSNP
rs1320022753 1590 dbSNP
rs1345480484 1596 dbSNP
rs12817 1600 dbSNP
rs1261116710 1603 dbSNP
rs550543458 1609 dbSNP
rs1804135 1613 dbSNP
rs1435305262 1620 dbSNP
rs1291292950 1622 dbSNP
rs149159018 1630 dbSNP
rs1224685337 1636 dbSNP
rs773337775 1638 dbSNP
rs1032232570 1640 dbSNP
rs1804134 1654 dbSNP
rs957975470 1656 dbSNP
rs1327658121 1658 dbSNP
rs1804132 1660 dbSNP
rs770883702 1663 dbSNP
rs187212981 1665 dbSNP
rs1451315146 1666 dbSNP
rs1219559647 1668 dbSNP
rs1321686774 1669 dbSNP
rs1452341031 1674 dbSNP
rs1804130 1682 dbSNP
rs1248537822 1686 dbSNP
rs1020822928 1687 dbSNP
rs538312809 1690 dbSNP
rs1804122 1698 dbSNP
rs1804125 1701 dbSNP
rs1470385499 1708 dbSNP
rs888671047 1709 dbSNP
rs553831491 1710 dbSNP
rs1262304706 1718 dbSNP
rs1182810326 1723 dbSNP
rs1459804099 1726 dbSNP
rs1804128 1730 dbSNP
rs1244667723 1743 dbSNP
rs1804133 1744 dbSNP
rs1203910479 1746 dbSNP
rs571917599 1747 dbSNP
rs748951409 1755 dbSNP
rs542657584 1758 dbSNP
rs1804123 1765 dbSNP
rs906695843 1773 dbSNP
rs370151650 1775 dbSNP
rs937340467 1777 dbSNP
rs574385738 1788 dbSNP
rs1298969102 1794 dbSNP
rs1033752519 1800 dbSNP
rs1245780610 1811 dbSNP
rs1381042283 1820 dbSNP
rs1339036627 1827 dbSNP
rs1259779123 1835 dbSNP
rs895170793 1839 dbSNP
rs15096 1849 dbSNP
rs991517637 1857 dbSNP
rs1337323228 1858 dbSNP
rs1390773649 1862 dbSNP
rs1010834595 1865 dbSNP
rs1442631917 1867 dbSNP
rs1386876569 1870 dbSNP
rs1183922689 1871 dbSNP
rs1195125427 1873 dbSNP
rs1021505221 1876 dbSNP
rs909446803 1882 dbSNP
rs544964224 1884 dbSNP
rs1480668816 1898 dbSNP
rs562903036 1899 dbSNP
rs374434740 1900 dbSNP
rs1062686 1907 dbSNP
rs1031955833 1913 dbSNP
rs965227420 1914 dbSNP
rs1426269097 1919 dbSNP
rs73215943 1924 dbSNP
rs1335448286 1936 dbSNP
rs920989244 1938 dbSNP
rs932317816 1948 dbSNP
rs1393283946 1950 dbSNP
rs759004971 1961 dbSNP
rs983751355 1962 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuuuauugacgucaaAACCGGUa 5'
                         ||||||| 
Target 5' ---------------UUGGCCAu 3'
 		1 - 8
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000336375.5 | 3UTR | UUGGCCAUUACCCCC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
PRAD -0.921 0.01 -0.700 0.09 5 Click to see details
THCA -0.232 0.09 -0.134 0.22 34 Click to see details
LUSC 0.323 0.13 0.354 0.11 14 Click to see details
BRCA -0.191 0.14 -0.164 0.17 35 Click to see details
CHOL -0.728 0.14 -0.800 0.1 4 Click to see details
HNSC -0.36 0.14 -0.173 0.31 11 Click to see details
KIRC 0.228 0.2 0.291 0.14 16 Click to see details
ESCA 0.812 0.2 0.500 0.33 3 Click to see details
UCEC -0.242 0.24 -0.264 0.22 11 Click to see details
KICH -0.217 0.26 -0.200 0.28 11 Click to see details
LIHC 0.066 0.36 0.084 0.32 34 Click to see details
STAD -0.126 0.36 -0.006 0.49 10 Click to see details
KIRP -0.052 0.46 0.071 0.44 7 Click to see details
PAAD 0.094 0.47 -0.500 0.33 3 Click to see details
PAAD 0.094 0.47 -0.500 0.33 3 Click to see details
PAAD 0.094 0.47 -0.500 0.33 3 Click to see details
PAAD 0.094 0.47 -0.500 0.33 3 Click to see details
PAAD 0.094 0.47 -0.500 0.33 3 Click to see details
374 hsa-miR-548s Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT075229 PHF13 PHD finger protein 13 2 4
MIRT090370 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT096411 C5ORF22 chromosome 5 open reading frame 22 2 2
MIRT153366 MAVS mitochondrial antiviral signaling protein 2 2
MIRT194890 DCTN5 dynactin subunit 5 2 8
MIRT195549 NIP7 NIP7, nucleolar pre-rRNA processing protein 2 2
MIRT219209 LYRM4 LYR motif containing 4 2 2
MIRT234472 ZNF652 zinc finger protein 652 2 2
MIRT235966 BACH1 BTB domain and CNC homolog 1 2 2
MIRT271874 ZNF678 zinc finger protein 678 2 2
MIRT294224 U2AF2 U2 small nuclear RNA auxiliary factor 2 2 2
MIRT334729 BTG2 BTG anti-proliferation factor 2 2 4
MIRT441397 SOX5 SRY-box 5 2 2
MIRT441551 TBCEL tubulin folding cofactor E like 2 2
MIRT441568 PLEKHA2 pleckstrin homology domain containing A2 2 2
MIRT441581 POLR1B RNA polymerase I subunit B 2 2
MIRT441681 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit 2 2
MIRT442049 KLHDC10 kelch domain containing 10 2 2
MIRT442633 TBC1D12 TBC1 domain family member 12 2 2
MIRT442694 ZNF646 zinc finger protein 646 2 4
MIRT443108 DENND5B DENN domain containing 5B 2 2
MIRT443110 VLDLR very low density lipoprotein receptor 2 2
MIRT443423 MAPT microtubule associated protein tau 2 2
MIRT443464 ACPP acid phosphatase, prostate 2 2
MIRT443763 HLF HLF, PAR bZIP transcription factor 2 2
MIRT443806 SIDT2 SID1 transmembrane family member 2 2 2
MIRT451031 ZNF610 zinc finger protein 610 2 2
MIRT451275 ZNF101 zinc finger protein 101 2 6
MIRT451671 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 6
MIRT454144 FLYWCH2 FLYWCH family member 2 2 8
MIRT454595 MAG myelin associated glycoprotein 2 4
MIRT459352 AGXT alanine-glyoxylate aminotransferase 2 2
MIRT460053 RPL22L1 ribosomal protein L22 like 1 2 2
MIRT460737 HEXA hexosaminidase subunit alpha 2 2
MIRT463084 ZNF618 zinc finger protein 618 2 2
MIRT465757 TMPPE transmembrane protein with metallophosphoesterase domain 2 8
MIRT471102 PHLDA2 pleckstrin homology like domain family A member 2 2 2
MIRT472939 MSMO1 methylsterol monooxygenase 1 2 6
MIRT473686 MAPK8 mitogen-activated protein kinase 8 2 4
MIRT474288 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 2 2
MIRT476935 FAM83G family with sequence similarity 83 member G 2 2
MIRT477130 FAM118A family with sequence similarity 118 member A 2 2
MIRT477321 EPHA2 EPH receptor A2 2 2
MIRT478310 DDN dendrin 2 2
MIRT494936 IFFO2 intermediate filament family orphan 2 2 2
MIRT495287 RASL10B RAS like family 10 member B 2 2
MIRT495310 GDF11 growth differentiation factor 11 2 2
MIRT495323 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 2 4
MIRT496580 RGMA repulsive guidance molecule family member a 2 2
MIRT496647 TNPO2 transportin 2 2 2
MIRT496804 SLC16A10 solute carrier family 16 member 10 2 2
MIRT496850 GPAM glycerol-3-phosphate acyltransferase, mitochondrial 2 2
MIRT496910 RTKN rhotekin 2 2
MIRT496955 MAP1LC3B microtubule associated protein 1 light chain 3 beta 2 2
MIRT497149 PRDM15 PR/SET domain 15 2 2
MIRT498253 ELAVL1 ELAV like RNA binding protein 1 2 2
MIRT498380 GPRC5B G protein-coupled receptor class C group 5 member B 2 2
MIRT500426 ZMAT3 zinc finger matrin-type 3 2 8
MIRT500482 ZBTB4 zinc finger and BTB domain containing 4 2 6
MIRT505372 TMEM154 transmembrane protein 154 2 4
MIRT505674 SESTD1 SEC14 and spectrin domain containing 1 2 6
MIRT509787 CHAF1B chromatin assembly factor 1 subunit B 2 4
MIRT512344 ZNF665 zinc finger protein 665 2 4
MIRT512404 CD84 CD84 molecule 2 2
MIRT512526 ATCAY ATCAY, caytaxin 2 4
MIRT513223 RYK receptor-like tyrosine kinase 2 2
MIRT514247 S1PR2 sphingosine-1-phosphate receptor 2 2 2
MIRT514276 ZNF345 zinc finger protein 345 2 4
MIRT514426 SLC38A7 solute carrier family 38 member 7 2 2
MIRT514551 PTGR2 prostaglandin reductase 2 2 2
MIRT514776 RBM4B RNA binding motif protein 4B 2 2
MIRT514854 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 2
MIRT515033 EBNA1BP2 EBNA1 binding protein 2 2 2
MIRT515265 CSNK1E casein kinase 1 epsilon 2 2
MIRT515283 MSRB1 methionine sulfoxide reductase B1 2 2
MIRT515587 FBXL13 F-box and leucine rich repeat protein 13 2 2
MIRT515898 AGTPBP1 ATP/GTP binding protein 1 2 2
MIRT515945 C9orf156 tRNA methyltransferase O 2 2
MIRT516281 DBT dihydrolipoamide branched chain transacylase E2 2 2
MIRT516517 PARK2 parkin RBR E3 ubiquitin protein ligase 2 2
MIRT516932 THAP1 THAP domain containing 1 2 4
MIRT517201 OTUD6A OTU deubiquitinase 6A 2 2
MIRT517379 METTL7A methyltransferase like 7A 2 2
MIRT517467 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517564 SNX22 sorting nexin 22 2 2
MIRT517617 DEGS1 delta 4-desaturase, sphingolipid 1 2 2
MIRT518210 TRMT10B tRNA methyltransferase 10B 2 2
MIRT518545 ABCA6 ATP binding cassette subfamily A member 6 2 2
MIRT519089 SLC4A1 solute carrier family 4 member 1 (Diego blood group) 2 4
MIRT519103 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 2 2
MIRT519138 C2orf49 chromosome 2 open reading frame 49 2 2
MIRT519316 TIMELESS timeless circadian clock 2 2
MIRT519393 DNASE2 deoxyribonuclease 2, lysosomal 2 4
MIRT519441 GLA galactosidase alpha 2 2
MIRT519465 SPTLC2 serine palmitoyltransferase long chain base subunit 2 2 2
MIRT519705 ZNF584 zinc finger protein 584 2 4
MIRT519822 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2 2
MIRT520236 USP9X ubiquitin specific peptidase 9, X-linked 2 4
MIRT520259 URGCP upregulator of cell proliferation 2 2
MIRT520409 TXNL1 thioredoxin like 1 2 4
MIRT521401 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT521511 QSOX1 quiescin sulfhydryl oxidase 1 2 2
MIRT522644 MANEAL mannosidase endo-alpha like 2 2
MIRT522789 KPNA4 karyopherin subunit alpha 4 2 4
MIRT523502 GMPS guanine monophosphate synthase 2 4
MIRT523686 FHL2 four and a half LIM domains 2 2 2
MIRT523902 EMC7 ER membrane protein complex subunit 7 2 4
MIRT524126 DMXL1 Dmx like 1 2 2
MIRT524770 BCKDK branched chain ketoacid dehydrogenase kinase 2 2
MIRT528264 GPRIN2 G protein regulated inducer of neurite outgrowth 2 2 2
MIRT528675 CEP57L1 centrosomal protein 57 like 1 2 2
MIRT529138 CLCC1 chloride channel CLIC like 1 2 4
MIRT530704 RNMTL1 mitochondrial rRNA methyltransferase 3 2 2
MIRT531620 TM4SF5 transmembrane 4 L six family member 5 2 4
MIRT533399 TXNIP thioredoxin interacting protein 2 2
MIRT535650 NLN neurolysin 2 2
MIRT539958 SPRY1 sprouty RTK signaling antagonist 1 2 2
MIRT551760 MED21 mediator complex subunit 21 2 2
MIRT552021 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT557187 HOXA10 homeobox A10 2 2
MIRT560435 GOLGA7B golgin A7 family member B 2 2
MIRT561596 SKI SKI proto-oncogene 2 2
MIRT563915 STAT2 signal transducer and activator of transcription 2 2 2
MIRT565964 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT567313 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT572687 NCMAP non-compact myelin associated protein 2 2
MIRT574419 SOX4 SRY-box 4 2 2
MIRT575235 Serping1 serine (or cysteine) peptidase inhibitor, clade G, member 1 2 2
MIRT576186 Vsig2 V-set and immunoglobulin domain containing 2 2 2
MIRT576301 Acbd7 acyl-Coenzyme A binding domain containing 7 2 2
MIRT576477 Lhx4 LIM homeobox protein 4 2 3
MIRT576576 Ptbp1 polypyrimidine tract binding protein 1 2 2
MIRT576602 Ccdc117 coiled-coil domain containing 117 2 2
MIRT576655 Fam216a family with sequence similarity 216, member A 2 2
MIRT576666 H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 2 2
MIRT576703 Kras Kirsten rat sarcoma viral oncogene homolog 2 2
MIRT576845 Socs6 suppressor of cytokine signaling 6 2 2
MIRT576944 Aldoa aldolase A, fructose-bisphosphate 2 2
MIRT608646 ABCF3 ATP binding cassette subfamily F member 3 2 2
MIRT609892 C1S complement C1s 2 2
MIRT613517 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614073 XRCC2 X-ray repair cross complementing 2 2 2
MIRT618202 C22orf39 chromosome 22 open reading frame 39 2 2
MIRT618350 CDKL1 cyclin dependent kinase like 1 2 2
MIRT618619 GREB1 growth regulation by estrogen in breast cancer 1 2 4
MIRT618826 PHF20 PHD finger protein 20 2 2
MIRT619371 SYT2 synaptotagmin 2 2 2
MIRT620103 HARBI1 harbinger transposase derived 1 2 2
MIRT620220 VN1R1 vomeronasal 1 receptor 1 2 2
MIRT621183 FAM153B family with sequence similarity 153 member B 2 2
MIRT621477 GPKOW G-patch domain and KOW motifs 2 2
MIRT621874 TAZ tafazzin 2 2
MIRT624054 EIF4E eukaryotic translation initiation factor 4E 2 2
MIRT624689 AR androgen receptor 2 2
MIRT625234 C6orf89 chromosome 6 open reading frame 89 2 2
MIRT626070 CWF19L1 CWF19 like 1, cell cycle control (S. pombe) 2 2
MIRT629490 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A 2 2
MIRT629861 GATAD1 GATA zinc finger domain containing 1 2 2
MIRT630995 ZNF573 zinc finger protein 573 2 2
MIRT631087 UQCRB ubiquinol-cytochrome c reductase binding protein 2 2
MIRT631279 SGSM1 small G protein signaling modulator 1 2 2
MIRT631526 MYO6 myosin VI 2 2
MIRT631637 WDR91 WD repeat domain 91 2 4
MIRT632773 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT633272 FGFR1OP2 FGFR1 oncogene partner 2 2 2
MIRT633588 ABRACL ABRA C-terminal like 2 2
MIRT634152 YME1L1 YME1 like 1 ATPase 2 2
MIRT634920 CHMP1B charged multivesicular body protein 1B 2 2
MIRT635848 PRR11 proline rich 11 2 2
MIRT636006 SAMD15 sterile alpha motif domain containing 15 2 4
MIRT639203 RAD51 RAD51 recombinase 2 2
MIRT639378 FFAR4 free fatty acid receptor 4 2 2
MIRT639535 GSG2 histone H3 associated protein kinase 2 2
MIRT639635 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 2 2
MIRT640224 TOMM40 translocase of outer mitochondrial membrane 40 2 2
MIRT640297 PRR13 proline rich 13 2 2
MIRT640683 MCUR1 mitochondrial calcium uniporter regulator 1 2 2
MIRT641118 NPHP3 nephrocystin 3 2 2
MIRT641451 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT642306 FPR1 formyl peptide receptor 1 2 2
MIRT642712 ZNF273 zinc finger protein 273 2 2
MIRT642840 ZNF891 zinc finger protein 891 2 2
MIRT643694 KIAA0586 KIAA0586 2 2
MIRT644309 NFKBID NFKB inhibitor delta 2 2
MIRT644504 GTF2F1 general transcription factor IIF subunit 1 2 2
MIRT645171 NOL9 nucleolar protein 9 2 4
MIRT645728 POLR3A RNA polymerase III subunit A 2 2
MIRT646120 SLC26A9 solute carrier family 26 member 9 2 2
MIRT647725 CXCR2 C-X-C motif chemokine receptor 2 2 2
MIRT647991 PDE12 phosphodiesterase 12 2 2
MIRT648053 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit 2 2
MIRT648172 TMEM192 transmembrane protein 192 2 2
MIRT648789 VPS8 VPS8, CORVET complex subunit 2 2
MIRT649285 NEK8 NIMA related kinase 8 2 2
MIRT649837 LIPG lipase G, endothelial type 2 2
MIRT650004 KLB klotho beta 2 2
MIRT650563 YIPF4 Yip1 domain family member 4 2 2
MIRT651782 UTP6 UTP6, small subunit processome component 2 2
MIRT652076 TSPAN14 tetraspanin 14 2 2
MIRT653397 SLCO5A1 solute carrier organic anion transporter family member 5A1 2 2
MIRT654540 RAB3C RAB3C, member RAS oncogene family 2 2
MIRT655362 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT655386 PAPLN papilin, proteoglycan like sulfated glycoprotein 2 2
MIRT657139 ITGA1 integrin subunit alpha 1 2 2
MIRT657754 GMEB1 glucocorticoid modulatory element binding protein 1 2 2
MIRT658821 EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 2 2
MIRT659082 DENR density regulated re-initiation and release factor 2 2
MIRT659106 DENND6A DENN domain containing 6A 2 2
MIRT659409 CORO2A coronin 2A 2 2
MIRT659829 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT660252 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT660260 BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 2 4
MIRT660933 ACOX1 acyl-CoA oxidase 1 2 2
MIRT662986 TMEM59 transmembrane protein 59 2 2
MIRT663064 SFR1 SWI5 dependent homologous recombination repair protein 1 2 2
MIRT663256 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 2 2
MIRT663583 C10orf32 BLOC-1 related complex subunit 7 2 2
MIRT663755 ZNF285 zinc finger protein 285 2 2
MIRT664135 ZMIZ2 zinc finger MIZ-type containing 2 2 2
MIRT665143 PTK6 protein tyrosine kinase 6 2 2
MIRT665394 WEE1 WEE1 G2 checkpoint kinase 2 2
MIRT665978 SYT11 synaptotagmin 11 2 2
MIRT666186 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 2 2
MIRT666568 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT666772 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT667018 PDF peptide deformylase, mitochondrial 2 2
MIRT667098 SLC25A2 solute carrier family 25 member 2 2 2
MIRT667134 NT5DC3 5'-nucleotidase domain containing 3 2 4
MIRT669790 GAN gigaxonin 2 2
MIRT669920 LRPAP1 LDL receptor related protein associated protein 1 2 2
MIRT669998 GPR156 G protein-coupled receptor 156 2 4
MIRT670291 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670380 EMP2 epithelial membrane protein 2 2 2
MIRT670453 RSBN1L round spermatid basic protein 1 like 2 2
MIRT670564 GLTP glycolipid transfer protein 2 2
MIRT670859 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT671055 KIF1B kinesin family member 1B 2 2
MIRT671078 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT671299 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT671801 WISP3 WNT1 inducible signaling pathway protein 3 2 2
MIRT671851 APOL2 apolipoprotein L2 2 2
MIRT671950 SPPL3 signal peptide peptidase like 3 2 2
MIRT671990 OSTF1 osteoclast stimulating factor 1 2 2
MIRT672163 FANCF Fanconi anemia complementation group F 2 2
MIRT672267 SHE Src homology 2 domain containing E 2 2
MIRT672444 TTPAL alpha tocopherol transfer protein like 2 2
MIRT672870 TTC28 tetratricopeptide repeat domain 28 2 2
MIRT673643 CYCS cytochrome c, somatic 2 4
MIRT674049 ATXN3 ataxin 3 2 2
MIRT674240 NUP62 nucleoporin 62 2 2
MIRT674276 LMOD3 leiomodin 3 2 2
MIRT674430 MIOX myo-inositol oxygenase 2 4
MIRT674473 BCL2L15 BCL2 like 15 2 2
MIRT674493 TIRAP TIR domain containing adaptor protein 2 2
MIRT674846 GINM1 glycoprotein integral membrane 1 2 2
MIRT675706 EMC3 ER membrane protein complex subunit 3 2 2
MIRT675972 FAM126B family with sequence similarity 126 member B 2 2
MIRT676235 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT676737 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT677426 DDX19B DEAD-box helicase 19B 2 2
MIRT677454 PDLIM3 PDZ and LIM domain 3 2 2
MIRT677576 TRIM65 tripartite motif containing 65 2 2
MIRT677639 HAUS2 HAUS augmin like complex subunit 2 2 2
MIRT677827 TSPYL1 TSPY like 1 2 2
MIRT678937 MYADM myeloid associated differentiation marker 2 2
MIRT680405 SFT2D2 SFT2 domain containing 2 2 2
MIRT680475 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 2
MIRT683260 ZNF329 zinc finger protein 329 2 2
MIRT683564 CARD8 caspase recruitment domain family member 8 2 2
MIRT683812 CBS cystathionine-beta-synthase 2 2
MIRT684532 ZNF460 zinc finger protein 460 2 2
MIRT684939 PLA2G16 phospholipase A2 group XVI 2 2
MIRT685127 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT685164 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit 2 2
MIRT685429 PM20D2 peptidase M20 domain containing 2 2 2
MIRT685437 SLC10A6 solute carrier family 10 member 6 2 2
MIRT685676 TRIM45 tripartite motif containing 45 2 2
MIRT685991 NEK4 NIMA related kinase 4 2 2
MIRT687311 OTUD7B OTU deubiquitinase 7B 2 2
MIRT687535 MOB1B MOB kinase activator 1B 2 2
MIRT687710 KLF2 Kruppel like factor 2 2 2
MIRT687902 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT688044 GLUL glutamate-ammonia ligase 2 2
MIRT688891 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 2 2
MIRT689242 PGPEP1 pyroglutamyl-peptidase I 2 2
MIRT689519 ORC6 origin recognition complex subunit 6 2 2
MIRT689582 NUDT7 nudix hydrolase 7 2 2
MIRT689611 AKAP6 A-kinase anchoring protein 6 2 2
MIRT689665 RBM23 RNA binding motif protein 23 2 2
MIRT689911 ACOT13 acyl-CoA thioesterase 13 2 2
MIRT690005 LUZP2 leucine zipper protein 2 2 2
MIRT690027 CCDC90B coiled-coil domain containing 90B 2 2
MIRT690309 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690503 MDM2 MDM2 proto-oncogene 2 2
MIRT691056 CRCP CGRP receptor component 2 2
MIRT691441 CXorf36 chromosome X open reading frame 36 2 2
MIRT691918 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 2
MIRT692269 GPR157 G protein-coupled receptor 157 2 2
MIRT692631 SUSD1 sushi domain containing 1 2 2
MIRT693378 ZNF528 zinc finger protein 528 2 2
MIRT693858 IYD iodotyrosine deiodinase 2 2
MIRT693971 ZNF70 zinc finger protein 70 2 2
MIRT694137 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT694288 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT694608 CXorf56 chromosome X open reading frame 56 2 2
MIRT694988 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT695160 TCTN2 tectonic family member 2 2 2
MIRT695359 PHAX phosphorylated adaptor for RNA export 2 2
MIRT695538 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 2 2
MIRT695884 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT696015 TYRO3 TYRO3 protein tyrosine kinase 2 2
MIRT696052 ZNF264 zinc finger protein 264 2 2
MIRT696119 GLP2R glucagon like peptide 2 receptor 2 2
MIRT696154 SLC11A2 solute carrier family 11 member 2 2 2
MIRT696158 TIPIN TIMELESS interacting protein 2 2
MIRT696295 SCO1 SCO1, cytochrome c oxidase assembly protein 2 2
MIRT696394 CORO7 coronin 7 2 2
MIRT696675 APOC3 apolipoprotein C3 2 2
MIRT696696 PNPO pyridoxamine 5'-phosphate oxidase 2 2
MIRT696742 RBM28 RNA binding motif protein 28 2 2
MIRT696842 WDR13 WD repeat domain 13 2 2
MIRT697179 QPCTL glutaminyl-peptide cyclotransferase like 2 2
MIRT697876 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT698134 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT698352 TMEM127 transmembrane protein 127 2 2
MIRT698698 TBC1D15 TBC1 domain family member 15 2 2
MIRT698824 STARD7 StAR related lipid transfer domain containing 7 2 2
MIRT699111 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT699657 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT699845 SCAMP4 secretory carrier membrane protein 4 2 2
MIRT699954 RSBN1 round spermatid basic protein 1 2 2
MIRT700447 PURB purine rich element binding protein B 2 2
MIRT700887 PER2 period circadian clock 2 2 2
MIRT700906 PDXK pyridoxal kinase 2 2
MIRT701001 PCSK6 proprotein convertase subtilisin/kexin type 6 2 2
MIRT701082 PAPOLG poly(A) polymerase gamma 2 2
MIRT701138 PANK1 pantothenate kinase 1 2 2
MIRT701204 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT701374 NOA1 nitric oxide associated 1 2 2
MIRT701627 MYO10 myosin X 2 2
MIRT701847 MRO maestro 2 2
MIRT702074 PCDHB11 protocadherin beta 11 2 2
MIRT702265 LHX4 LIM homeobox 4 2 3
MIRT702350 KLHL26 kelch like family member 26 2 2
MIRT702417 KIF5B kinesin family member 5B 2 2
MIRT702553 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT702769 IFNLR1 interferon lambda receptor 1 2 2
MIRT703300 GGCX gamma-glutamyl carboxylase 2 2
MIRT703408 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703467 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 2
MIRT703549 FKBP14 FK506 binding protein 14 2 2
MIRT703953 ENAH ENAH, actin regulator 2 2
MIRT703969 EMC10 ER membrane protein complex subunit 10 2 2
MIRT704307 DCUN1D5 defective in cullin neddylation 1 domain containing 5 2 2
MIRT704455 CRNKL1 crooked neck pre-mRNA splicing factor 1 2 2
MIRT705028 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT705113 C4orf29 abhydrolase domain containing 18 2 2
MIRT705837 AHCY adenosylhomocysteinase 2 2
MIRT708432 CPM carboxypeptidase M 2 2
MIRT710340 ZNF669 zinc finger protein 669 2 2
MIRT710828 PLEKHO2 pleckstrin homology domain containing O2 2 2
MIRT712615 KNSTRN kinetochore localized astrin/SPAG5 binding protein 2 2
MIRT714275 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT718942 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor 2 2
MIRT719748 RRP8 ribosomal RNA processing 8 2 2
MIRT720035 C12orf5 TP53 induced glycolysis regulatory phosphatase 2 2
MIRT720432 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT720632 SPA17 sperm autoantigenic protein 17 2 2
MIRT720728 ELOVL7 ELOVL fatty acid elongase 7 2 2
MIRT722882 MOB3A MOB kinase activator 3A 2 2
MIRT723045 YTHDC1 YTH domain containing 1 2 2
MIRT723441 NDUFAF3 NADH:ubiquinone oxidoreductase complex assembly factor 3 2 2
MIRT724404 WWC1 WW and C2 domain containing 1 2 2
MIRT725459 GRAP2 GRB2-related adaptor protein 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-548s Ceritinib 57379345 NSC776422 approved sensitive High Non-Small Cell Lung Cancer cell line (H3122, H2228)
hsa-mir-548s Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)
hsa-miR-548s Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-548s Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-548s Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-548s Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-548s Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-548s Ceritinib 57379345 NSC776422 approved sensitive cell line (H3122)

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