miRTarBase - #MIRT443500


—
pre-miRNA Information
pre-miRNA hsa-mir-6808   
Genomic Coordinates chr1: 1339650 - 1339708
Description Homo sapiens miR-6808 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-6808-5p
Sequence 6| CAGGCAGGGAGGUGGGACCAUG |27
Evidence Experimental
Experiments Meta-analysis
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs200363718 2 dbSNP
rs781187339 3 dbSNP
rs1175964401 5 dbSNP
rs377360440 9 dbSNP
rs1284899234 12 dbSNP
rs747433206 13 dbSNP
rs1431822851 14 dbSNP
rs1342544357 19 dbSNP
rs751585831 20 dbSNP
rs763913520 21 dbSNP
rs755106743 22 dbSNP
Putative Targets

Gene Information
Gene Symbol MXI1   
Synonyms MAD2, MXD2, MXI, bHLHc11
Description MAX interactor 1, dimerization protein
Transcript NM_001008541   
Other Transcripts NM_005962 , NM_130439   
Expression
Putative miRNA Targets on MXI1
3'UTR of MXI1
(miRNA target sites are highlighted)		 
>MXI1|NM_001008541|3'UTR
   1 AACCCAGCATGACATAACAGTGCAGGGCAAAATATTCACTGGGCCAATTCAATACAAACAATCTCTTAAATTGGGTTCAT
  81 GATGCAGTCTCCTCTTTAAAACAAAACAAAACAAAACAAAACTATACTTGAACAAAAGGGTCAGAGGACCTGTATTTAAG
 161 CAAATACTTAGCAAAAAGTGGGGCAGAGCCTCCCAAGGAGAACAAATATTCAGAATATTCATATTGGAAAAATCACAATT
 241 TTTAATGGCAGCAGAAAACTTGTGTGAAATTTTCTTGATTTGAGTTGATTGAGAAGAGGACATTGGAGATGCCATCCTCT
 321 TTCTCTTTTCTAGTTTGCTCATACTACATTGAGTAGACACATTTAAGGATGGGGTTATGAACCCTTCCTGAGCTTTATGG
 401 TCCTAAAAGCAAAATAAAAACTATTCGAATGAAAAGACAAGAAAATCAGGTATTAATCTTGGATAGCTAATAATGAGCTA
 481 TTAAAACTCAGCCTGGGACAGTTTATCATGAAGCCTGTGGATGATCAATCCTTTATTATTATTTTTTTTTTTTGAAAAAA
 561 GCTCATTTCATGCTCTGCAAAAGGAGAGACTCCCATGAAGCCTTTTGAAAGGGATCATCATGCAGCTCAACTTTCTGTTG
 641 GATTCCATGCTAAGCAAGCTAACCTTATCCTGCATTGTTAGCACTAGGCACCCAGCTGCCACCTCTCCATCCTGCTGCCC
 721 TTAGGCCACATGGGAGCAGTCCATGCATGACAGCCTCTATCCTACAAGGCCTATGAGTATGGATTGGGGGGGCCAAAAGG
 801 AAAAAGCTCCATGTGCCTCTTTGTCTGCGTGGGTCAGAAGAGTTGTGCACGCAGATTAGCAGGCCAAGGTCTGAGCCACA
 881 GCAGCATTTTTATTTCAGATTTTGATAACTGTTTATATGTGTTGAAAACCAAAATGACATCTTTTTAAAGCTTATCCATA
 961 AAAAAAAATAGATGTCTTTTATAGTGGAAAAACACATGGGGAAAAAAATCATCTATTTTGATGCAGCATTTGATAATGAT
1041 AAAACACCTCACACCTCACTCTTTATAGTGCACAAAATGAATGAGGTCTGGGCTAGGTAGAAAAAGGGTCAATGCTATTT
1121 TTGTTTTTAGAATCATTACCTTTTACCAGCTTTTAACCATCTGATATCTATAGTAGACACACTATCATAGTTAACATAGT
1201 AAGTTCAGCACTTGTCTCATTTTAATGTAAAGATTTGCTTCCATTTTCCTACAGGCAGTCTCTCTCTTCCTCACAGTCCC
1281 ACTGTGCAGGTGCTATTGTTACTCTTACGAATATTTTCAGTAATGTTATTTTCTTCTAAGTGAAATTTCTAGCCTGCACT
1361 TTGATGTCATGTGTTCCCTTTGTCTTTCAAACTCCAAGGTTCCCTTGTGGCCCTCTCCCTTACCCTGGGAAGGCCTCTTG
1441 GAGACCTTACCCCTGGCTGTTTGGACTTTGTATACTTTAAATAATTTAACTACCCTTAATTACTTAAAAAAAAAAAAAAG
1521 CTTTATGATTTTCATAACTTATTGCTGATTTTAATGGATTGTTAATTTCAGTCCTGTAGTTTTATTTTATGTTTAGATAG
1601 GGCTGGGCAAGGAAAAAGAAAATAAAGACAACCATATTTAGCAGTGCAGTTGAGTTGTGTGTTAATGTTAGACTATCCCT
1681 TTGTGAGTGACACTTTAACAGCATTCACTGCTTCTATATATAGTGTACCATCTTGGTCATACATTACGCCTCAACATATA
1761 CTTGTGCTCTTCCTTTGCCTCCAGAAGAAGTTTTTCCTTGATTGTGCTATGTTTCAGTGGAAGAAATTCTTTGAAGTAGA
1841 TGTGAGTGAAAAACTGCATGCCTTTAGAAGCCCAGTATCAGAACTTGCTACGTTTCAGGTGCTAGGGACTTAATGAAAAA
1921 CAGGACAAAACAATTCCTTTTTGTGGCCCAGGTAAATTATTTCTGGTTTCACTTATAATTACTAATGGCTGAGTCAAGAT
2001 GTTGTCTCTGTGTTTGCTTACTCTTGATCAAGTGTGAGACAGTTTGAAGACTGTGCTACCATACAAAGTGAATGAAGCCA
2081 GTGACTAAGCTTCTGTTTGTTTTGTTATTCTCATGGCCTTCGCTTGCATTATTTGGGCCTTCATTCAGATGAACTTGAGG
2161 TGCCATTTTGTTGCATATGTACAGGATTATGGGCTGGAAAGCATTTGTTATAAACCTATAGTGCACATTTTAACTGCCCC
2241 CTAAATTACCCTTCCCTGGGTTTGTTTTCCTTGGGGTGGTGTAGATTGTATGAGTAAGAAGTATTAATTTTTTAAAAGAC
2321 AAATCAACTTTGAAGACACAAAAGTTAATTGGAAGAAATAAAAACTGTGAACGAAGAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guaCCAGGGUGGAG-----GGACGGac 5'
             | | |||||||     |||||:  
Target 5' ccaGCTGCCACCTCTCCATCCTGCTgc 3'
 692 - 718 127.00 -21.70
2 
miRNA  3' guACCAGGGUGGAGGGACGGAc 5'
            | || |: :: |::||||| 
Target 5' acTTGTGCTCTTCCTTTGCCTc 3'
 1760 - 1781 124.00 -15.10
3 
miRNA  3' guaccaGGGUGGA--GGGACGGAc 5'
                |: ||||  :||||| | 
Target 5' agcaagCTAACCTTATCCTGCATt 3'
 653 - 676 122.00 -14.02
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN15625379 4 COSMIC
COSN6056518 62 COSMIC
COSN31505370 82 COSMIC
COSN31660622 109 COSMIC
COSN19697364 119 COSMIC
COSN20107530 119 COSMIC
COSN6404229 121 COSMIC
COSN21690345 252 COSMIC
COSN20107531 290 COSMIC
COSN29290540 304 COSMIC
COSN17480859 320 COSMIC
COSN14924488 385 COSMIC
COSN31662356 410 COSMIC
COSN28698248 427 COSMIC
COSN8639046 532 COSMIC
COSN31960547 545 COSMIC
COSN20107532 554 COSMIC
COSN1471061 555 COSMIC
COSN29397774 652 COSMIC
COSN30545035 709 COSMIC
COSN30545033 728 COSMIC
COSN31583795 905 COSMIC
COSN26110272 939 COSMIC
COSN31608402 964 COSMIC
COSN27453314 969 COSMIC
COSN31571352 1006 COSMIC
COSN21816031 1044 COSMIC
COSN26563375 1108 COSMIC
COSN20107533 1201 COSMIC
COSN30540228 1238 COSMIC
COSN1471062 1267 COSMIC
COSN31585534 1310 COSMIC
COSN19579691 1315 COSMIC
COSN23013153 1406 COSMIC
COSN26648157 1441 COSMIC
COSN20107538 1520 COSMIC
COSN22459699 1589 COSMIC
COSN15767564 1710 COSMIC
COSN31960548 1767 COSMIC
COSN21326896 1843 COSMIC
COSN29175860 1974 COSMIC
COSN8529017 2013 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1489172790 4 dbSNP
rs568124137 8 dbSNP
rs372796107 15 dbSNP
rs1479596844 17 dbSNP
rs1201601220 19 dbSNP
rs535643627 24 dbSNP
rs762496457 24 dbSNP
rs1321051519 26 dbSNP
rs200475791 41 dbSNP
rs769324712 47 dbSNP
rs747034948 48 dbSNP
rs762847891 52 dbSNP
rs1300990622 54 dbSNP
rs879104332 54 dbSNP
rs1164459642 56 dbSNP
rs1233429169 56 dbSNP
rs1305687081 59 dbSNP
rs1052452536 61 dbSNP
rs1354151890 62 dbSNP
rs1329858021 64 dbSNP
rs998500496 66 dbSNP
rs912760686 69 dbSNP
rs1373954633 70 dbSNP
rs1173440997 72 dbSNP
rs1455047704 73 dbSNP
rs575507622 87 dbSNP
rs944191435 97 dbSNP
rs1192425712 98 dbSNP
rs1231830162 98 dbSNP
rs143863791 98 dbSNP
rs16448 98 dbSNP
rs397735858 98 dbSNP
rs536588853 98 dbSNP
rs567649969 98 dbSNP
rs202145367 103 dbSNP
rs1182004069 104 dbSNP
rs1390482802 113 dbSNP
rs1033706964 115 dbSNP
rs1209950647 129 dbSNP
rs1348460070 134 dbSNP
rs139187896 151 dbSNP
rs996255289 160 dbSNP
rs1048795509 166 dbSNP
rs747147019 168 dbSNP
rs770488325 173 dbSNP
rs558209203 174 dbSNP
rs573369904 182 dbSNP
rs1377786532 183 dbSNP
rs896326984 199 dbSNP
rs1400646470 203 dbSNP
rs997008660 209 dbSNP
rs1406561545 210 dbSNP
rs1450181892 222 dbSNP
rs111782953 225 dbSNP
rs955504554 231 dbSNP
rs987292130 239 dbSNP
rs540769321 248 dbSNP
rs1023981479 252 dbSNP
rs969366065 253 dbSNP
rs1238998246 261 dbSNP
rs1316301242 270 dbSNP
rs1284987068 276 dbSNP
rs1245670264 280 dbSNP
rs16410 285 dbSNP
rs397831756 285 dbSNP
rs979755951 285 dbSNP
rs1415643772 287 dbSNP
rs762734214 290 dbSNP
rs1287522168 291 dbSNP
rs956694256 292 dbSNP
rs1346362239 299 dbSNP
rs961705745 300 dbSNP
rs1458415966 304 dbSNP
rs1415189291 307 dbSNP
rs748699464 308 dbSNP
rs1475331984 313 dbSNP
rs1273898255 318 dbSNP
rs1459415984 322 dbSNP
rs1182109980 339 dbSNP
rs562172779 340 dbSNP
rs951936784 341 dbSNP
rs529419491 344 dbSNP
rs1210657449 349 dbSNP
rs1243109763 350 dbSNP
rs1467149203 353 dbSNP
rs1272631278 364 dbSNP
rs770257989 368 dbSNP
rs944208348 375 dbSNP
rs1234091428 379 dbSNP
rs79317146 383 dbSNP
rs375630519 388 dbSNP
rs1133195 398 dbSNP
rs1048662498 402 dbSNP
rs1439355794 405 dbSNP
rs1168202916 406 dbSNP
rs887453626 411 dbSNP
rs1402010961 412 dbSNP
rs1324668533 421 dbSNP
rs940313468 422 dbSNP
rs1351305716 426 dbSNP
rs14401 427 dbSNP
rs77480185 428 dbSNP
rs570155260 434 dbSNP
rs1013744998 439 dbSNP
rs79987069 444 dbSNP
rs1452538990 450 dbSNP
rs893422817 451 dbSNP
rs1252403583 453 dbSNP
rs1214455779 468 dbSNP
rs1489573291 470 dbSNP
rs997062543 471 dbSNP
rs546245123 472 dbSNP
rs758983571 476 dbSNP
rs1000766671 477 dbSNP
rs1324767824 483 dbSNP
rs1032193153 488 dbSNP
rs1232688705 489 dbSNP
rs1008382710 492 dbSNP
rs1302033889 493 dbSNP
rs1441057389 494 dbSNP
rs1392415862 496 dbSNP
rs1226780368 497 dbSNP
rs1296033937 500 dbSNP
rs766897281 515 dbSNP
rs961483215 516 dbSNP
rs995947551 518 dbSNP
rs1170281234 522 dbSNP
rs767028601 525 dbSNP
rs1262934282 528 dbSNP
rs959322353 530 dbSNP
rs1020126487 533 dbSNP
rs142468596 533 dbSNP
rs780056169 533 dbSNP
rs965527517 537 dbSNP
rs796602716 538 dbSNP
rs1260251826 539 dbSNP
rs868681377 539 dbSNP
rs200411966 540 dbSNP
rs201683520 541 dbSNP
rs915799447 541 dbSNP
rs1412781558 542 dbSNP
rs376761325 542 dbSNP
rs386372425 542 dbSNP
rs534502156 542 dbSNP
rs865795091 542 dbSNP
rs879167044 542 dbSNP
rs975902630 544 dbSNP
rs568171881 545 dbSNP
rs1467522931 547 dbSNP
rs924397269 548 dbSNP
rs1479271746 554 dbSNP
rs201236801 555 dbSNP
rs373728435 556 dbSNP
rs1406562135 559 dbSNP
rs1254293193 566 dbSNP
rs934420976 571 dbSNP
rs1467330327 579 dbSNP
rs183136652 580 dbSNP
rs769837775 584 dbSNP
rs1054099545 604 dbSNP
rs557151957 614 dbSNP
rs569033976 618 dbSNP
rs752275349 623 dbSNP
rs914242543 624 dbSNP
rs774922522 625 dbSNP
rs372807268 629 dbSNP
rs868540927 635 dbSNP
rs1049979946 638 dbSNP
rs1384133531 639 dbSNP
rs1334602362 644 dbSNP
rs1381761745 650 dbSNP
rs1382758259 651 dbSNP
rs891359239 655 dbSNP
rs538641095 656 dbSNP
rs144681278 664 dbSNP
rs1414450028 666 dbSNP
rs1342395591 667 dbSNP
rs1162972821 675 dbSNP
rs940345650 676 dbSNP
rs1418968534 684 dbSNP
rs1190111475 692 dbSNP
rs1445747269 693 dbSNP
rs1282807602 703 dbSNP
rs558172566 712 dbSNP
rs1037193269 715 dbSNP
rs1204024427 715 dbSNP
rs1269480100 720 dbSNP
rs1231029267 728 dbSNP
rs760658126 738 dbSNP
rs995591574 740 dbSNP
rs1027045448 742 dbSNP
rs533137890 748 dbSNP
rs1246768076 754 dbSNP
rs1324612604 760 dbSNP
rs1294842201 761 dbSNP
rs1235864978 766 dbSNP
rs1435732571 775 dbSNP
rs959370999 778 dbSNP
rs1323997788 779 dbSNP
rs553873004 785 dbSNP
rs763845415 786 dbSNP
rs949187907 787 dbSNP
rs1372888355 788 dbSNP
rs1194430311 789 dbSNP
rs1451910843 791 dbSNP
rs1022914273 792 dbSNP
rs1894287 794 dbSNP
rs1467730165 810 dbSNP
rs1290232680 811 dbSNP
rs1211400908 813 dbSNP
rs573232753 822 dbSNP
rs1045202104 828 dbSNP
rs534186727 829 dbSNP
rs1264737032 830 dbSNP
rs905040363 833 dbSNP
rs1031512738 837 dbSNP
rs956028254 838 dbSNP
rs763978972 840 dbSNP
rs773493270 847 dbSNP
rs1198244333 848 dbSNP
rs1000632328 851 dbSNP
rs753645286 852 dbSNP
rs1009434370 857 dbSNP
rs753600562 862 dbSNP
rs1169651905 866 dbSNP
rs1432147848 867 dbSNP
rs1393849990 870 dbSNP
rs914294925 881 dbSNP
rs1362967346 889 dbSNP
rs572121071 896 dbSNP
rs1200500533 905 dbSNP
rs932342271 906 dbSNP
rs1205656214 910 dbSNP
rs965743657 911 dbSNP
rs985089429 915 dbSNP
rs757672550 916 dbSNP
rs555550200 918 dbSNP
rs1345721813 924 dbSNP
rs1160324369 929 dbSNP
rs1028802146 930 dbSNP
rs1440235361 938 dbSNP
rs1335453392 940 dbSNP
rs944310548 942 dbSNP
rs1412141137 946 dbSNP
rs1403172697 959 dbSNP
rs569487570 960 dbSNP
rs908702172 960 dbSNP
rs961662377 960 dbSNP
rs187463383 969 dbSNP
rs917620511 969 dbSNP
rs897338214 970 dbSNP
rs1302834639 971 dbSNP
rs1182612693 972 dbSNP
rs1483879316 977 dbSNP
rs949044057 996 dbSNP
rs1368549767 1002 dbSNP
rs1442962450 1003 dbSNP
rs1280804609 1005 dbSNP
rs931437916 1009 dbSNP
rs1044840369 1014 dbSNP
rs1289285519 1017 dbSNP
rs1230478598 1025 dbSNP
rs1353882867 1028 dbSNP
rs1312677852 1037 dbSNP
rs926327597 1038 dbSNP
rs751835182 1039 dbSNP
rs936519068 1042 dbSNP
rs1398506296 1043 dbSNP
rs1410597088 1046 dbSNP
rs1316654127 1055 dbSNP
rs1473384416 1059 dbSNP
rs1241525727 1062 dbSNP
rs1053583986 1065 dbSNP
rs1483520779 1069 dbSNP
rs1213719413 1076 dbSNP
rs1239208661 1076 dbSNP
rs1464453605 1089 dbSNP
rs1356732514 1090 dbSNP
rs1268856528 1093 dbSNP
rs892299585 1095 dbSNP
rs1333027989 1099 dbSNP
rs148578795 1103 dbSNP
rs1229315785 1114 dbSNP
rs1381951988 1118 dbSNP
rs1268873371 1129 dbSNP
rs1430645572 1131 dbSNP
rs563145045 1149 dbSNP
rs1387220764 1150 dbSNP
rs1012294472 1152 dbSNP
rs965106 1157 dbSNP
rs41291904 1158 dbSNP
rs906494968 1159 dbSNP
rs779458725 1172 dbSNP
rs1489274746 1175 dbSNP
rs1458472206 1179 dbSNP
rs1391892130 1182 dbSNP
rs1163804342 1183 dbSNP
rs1424238872 1185 dbSNP
rs1415712200 1187 dbSNP
rs1175068542 1195 dbSNP
rs545257076 1197 dbSNP
rs1248698520 1198 dbSNP
rs5787844 1200 dbSNP
rs1160449256 1203 dbSNP
rs1265140256 1215 dbSNP
rs1222602323 1221 dbSNP
rs955886530 1223 dbSNP
rs1028415238 1233 dbSNP
rs989929219 1234 dbSNP
rs1021369472 1240 dbSNP
rs1366627873 1250 dbSNP
rs1297661962 1260 dbSNP
rs1436732819 1262 dbSNP
rs1368322497 1263 dbSNP
rs1422870855 1266 dbSNP
rs555121595 1275 dbSNP
rs1458102253 1279 dbSNP
rs952805634 1280 dbSNP
rs1005636867 1292 dbSNP
rs781405557 1293 dbSNP
rs1190578801 1294 dbSNP
rs74749997 1294 dbSNP
rs1452593925 1307 dbSNP
rs1266762562 1308 dbSNP
rs528051974 1309 dbSNP
rs943677462 1310 dbSNP
rs1231506310 1315 dbSNP
rs1204949469 1322 dbSNP
rs973020726 1325 dbSNP
rs1277470733 1328 dbSNP
rs917467267 1332 dbSNP
rs1459665024 1354 dbSNP
rs1300030383 1358 dbSNP
rs758963607 1363 dbSNP
rs970423221 1366 dbSNP
rs980813523 1370 dbSNP
rs1296236351 1376 dbSNP
rs926285873 1378 dbSNP
rs1370952218 1379 dbSNP
rs1170335061 1384 dbSNP
rs936466759 1385 dbSNP
rs918818932 1392 dbSNP
rs17658 1406 dbSNP
rs945186423 1414 dbSNP
rs1312174807 1417 dbSNP
rs1048593037 1422 dbSNP
rs551694039 1424 dbSNP
rs895268288 1432 dbSNP
rs868066606 1433 dbSNP
rs1406150098 1446 dbSNP
rs1181897416 1450 dbSNP
rs1483555520 1452 dbSNP
rs1803997 1456 dbSNP
rs1245830875 1467 dbSNP
rs1483221843 1469 dbSNP
rs529009652 1470 dbSNP
rs550496346 1473 dbSNP
rs1313575439 1479 dbSNP
rs1202008110 1480 dbSNP
rs1050227491 1482 dbSNP
rs1227404032 1487 dbSNP
rs1350836912 1497 dbSNP
rs1250405746 1500 dbSNP
rs1309642946 1500 dbSNP
rs1394189730 1503 dbSNP
rs1159351216 1505 dbSNP
rs1458089127 1505 dbSNP
rs1166137768 1506 dbSNP
rs1186314930 1506 dbSNP
rs1401669851 1506 dbSNP
rs1414583762 1506 dbSNP
rs369063917 1506 dbSNP
rs1180250387 1507 dbSNP
rs1241246127 1513 dbSNP
rs68149252 1514 dbSNP
rs569072541 1519 dbSNP
rs11414194 1520 dbSNP
rs201619843 1521 dbSNP
rs1182331111 1526 dbSNP
rs1207655522 1527 dbSNP
rs1031616039 1535 dbSNP
rs1242428276 1543 dbSNP
rs1289944664 1543 dbSNP
rs891711898 1549 dbSNP
rs796660433 1556 dbSNP
rs1005668184 1559 dbSNP
rs1397721364 1563 dbSNP
rs1011398438 1564 dbSNP
rs1386494323 1565 dbSNP
rs879290214 1571 dbSNP
rs1457946113 1574 dbSNP
rs550171882 1580 dbSNP
rs1163207683 1588 dbSNP
rs897347580 1590 dbSNP
rs1369411833 1591 dbSNP
rs539651942 1593 dbSNP
rs565243487 1601 dbSNP
rs1021420486 1603 dbSNP
rs1354147009 1605 dbSNP
rs1466514913 1616 dbSNP
rs1187427851 1624 dbSNP
rs1333825598 1631 dbSNP
rs142983262 1635 dbSNP
rs1465061910 1637 dbSNP
rs1014799472 1640 dbSNP
rs768789142 1647 dbSNP
rs1355300745 1650 dbSNP
rs1265849015 1651 dbSNP
rs1246841568 1653 dbSNP
rs1404301045 1655 dbSNP
rs1363004276 1656 dbSNP
rs1452563799 1656 dbSNP
rs1285233142 1659 dbSNP
rs1296928299 1667 dbSNP
rs1435980763 1668 dbSNP
rs1006657620 1671 dbSNP
rs1321752247 1693 dbSNP
rs1380790651 1694 dbSNP
rs970750656 1694 dbSNP
rs771291932 1697 dbSNP
rs1428342805 1701 dbSNP
rs1390171059 1703 dbSNP
rs1167404061 1708 dbSNP
rs1449485142 1709 dbSNP
rs1212278768 1711 dbSNP
rs146163324 1716 dbSNP
rs1196263860 1719 dbSNP
rs972789095 1721 dbSNP
rs2795915 1725 dbSNP
rs1267760885 1726 dbSNP
rs534148398 1729 dbSNP
rs952934912 1733 dbSNP
rs781381937 1748 dbSNP
rs1344358647 1757 dbSNP
rs1273177117 1759 dbSNP
rs80314746 1760 dbSNP
rs916753619 1763 dbSNP
rs1210740021 1764 dbSNP
rs140119888 1767 dbSNP
rs1046490221 1768 dbSNP
rs928026007 1770 dbSNP
rs190300716 1773 dbSNP
rs1403912700 1783 dbSNP
rs977024435 1785 dbSNP
rs143851004 1789 dbSNP
rs146451382 1790 dbSNP
rs563603121 1800 dbSNP
rs1481911453 1802 dbSNP
rs1250841605 1808 dbSNP
rs1205723061 1810 dbSNP
rs1049659451 1817 dbSNP
rs182572924 1819 dbSNP
rs1173019962 1821 dbSNP
rs1218788764 1825 dbSNP
rs560382149 1830 dbSNP
rs1345957539 1832 dbSNP
rs888462504 1833 dbSNP
rs771778357 1834 dbSNP
rs1011449321 1841 dbSNP
rs1309046296 1842 dbSNP
rs1042929140 1843 dbSNP
rs1037121119 1847 dbSNP
rs1414256446 1858 dbSNP
rs1413470538 1860 dbSNP
rs897211703 1865 dbSNP
rs1014335450 1866 dbSNP
rs1428085556 1871 dbSNP
rs889628115 1878 dbSNP
rs906014942 1888 dbSNP
rs1340546890 1892 dbSNP
rs1002225426 1899 dbSNP
rs775034403 1902 dbSNP
rs1209347578 1909 dbSNP
rs1220107731 1912 dbSNP
rs1443012173 1920 dbSNP
rs796197045 1922 dbSNP
rs1207009593 1925 dbSNP
rs1328810859 1933 dbSNP
rs1019380699 1965 dbSNP
rs965502077 1966 dbSNP
rs1230696387 1967 dbSNP
rs140782771 1970 dbSNP
rs1449437115 1974 dbSNP
rs541044610 1976 dbSNP
rs776463731 1977 dbSNP
rs1387534370 1978 dbSNP
rs976509013 1981 dbSNP
rs1402167406 1983 dbSNP
rs1411366755 1985 dbSNP
rs922455539 1986 dbSNP
rs761632479 1990 dbSNP
rs1473100423 1992 dbSNP
rs1245026395 2000 dbSNP
rs1445181657 2001 dbSNP
rs1186799446 2004 dbSNP
rs1214923417 2007 dbSNP
rs1262584260 2009 dbSNP
rs777279247 2009 dbSNP
rs1218230931 2019 dbSNP
rs1488619717 2024 dbSNP
rs932472710 2034 dbSNP
rs1289642191 2046 dbSNP
rs984391192 2052 dbSNP
rs765133370 2053 dbSNP
rs750297261 2054 dbSNP
rs1316526659 2059 dbSNP
rs1477931836 2063 dbSNP
rs1173491061 2067 dbSNP
rs1432328077 2069 dbSNP
rs941350700 2070 dbSNP
rs149653820 2079 dbSNP
rs1432502657 2081 dbSNP
rs755245055 2082 dbSNP
rs982669695 2090 dbSNP
rs928104816 2092 dbSNP
rs1405853300 2094 dbSNP
rs1158515600 2096 dbSNP
rs1166782715 2096 dbSNP
rs1448882340 2100 dbSNP
rs1248730548 2103 dbSNP
rs935421407 2109 dbSNP
rs1401307933 2114 dbSNP
rs376784350 2115 dbSNP
rs1300972040 2116 dbSNP
rs1362198845 2118 dbSNP
rs561767430 2122 dbSNP
rs1045805502 2123 dbSNP
rs116751374 2124 dbSNP
rs1276433094 2130 dbSNP
rs946689657 2149 dbSNP
rs1042981436 2156 dbSNP
rs774237577 2162 dbSNP
rs550609387 2163 dbSNP
rs562445011 2174 dbSNP
rs893421466 2176 dbSNP
rs1437004888 2200 dbSNP
rs1010440335 2206 dbSNP
rs551796909 2210 dbSNP
rs1218852495 2211 dbSNP
rs533131021 2219 dbSNP
rs1172672063 2221 dbSNP
rs1431651718 2229 dbSNP
rs966388657 2235 dbSNP
rs998357022 2239 dbSNP
rs1490922989 2249 dbSNP
rs1451280568 2252 dbSNP
rs1250102601 2253 dbSNP
rs1199786474 2263 dbSNP
rs1483698051 2264 dbSNP
rs1248837141 2285 dbSNP
rs1251355511 2287 dbSNP
rs1206094004 2290 dbSNP
rs1310060543 2291 dbSNP
rs1300096259 2294 dbSNP
rs551618149 2300 dbSNP
rs1468868606 2304 dbSNP
rs1286277665 2308 dbSNP
rs1299950580 2314 dbSNP
rs1409102576 2314 dbSNP
rs954016612 2316 dbSNP
rs985257746 2322 dbSNP
rs1177005874 2323 dbSNP
rs1381458470 2331 dbSNP
rs1481556047 2336 dbSNP
rs909710190 2345 dbSNP
rs1421044538 2350 dbSNP
rs1473204743 2351 dbSNP
rs1253355496 2360 dbSNP
rs1199259298 2366 dbSNP
rs1481951770 2368 dbSNP
rs1161100210 2369 dbSNP
rs566750724 2370 dbSNP
rs767669759 2373 dbSNP
rs918614257 2374 dbSNP
rs1333832028 2376 dbSNP
rs900973941 2377 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guaCCAGGGU-GGAGGGACGGAc 5'
             |||:| | |  ::|| ||| 
Target 5' uugGGUUCAAGCAAUUCU-CCU- 3'
 		1 - 21
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions TZM-bl
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM1462574. RNA binding protein: AGO2. Condition:TZM-bl ami BaL ...

- Whisnant AW; Bogerd HP; Flores O; Ho P; et al., 2013, mBio.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guaCCAGGGU-GGAGGGACGGAc 5'
             |||:| | |  ::|| ||| 
Target 5' uugGGUUCAAGCAAUUCU-CCU- 3'
 		5 - 25
Article - Whisnant AW; Bogerd HP; Flores O; Ho P; et al.
- mBio, 2013
UNLABELLED: The question of how HIV-1 interfaces with cellular microRNA (miRNA) biogenesis and effector mechanisms has been highly controversial. Here, we first used deep sequencing of small RNAs present in two different infected cell lines (TZM-bl and C8166) and two types of primary human cells (CD4(+) peripheral blood mononuclear cells [PBMCs] and macrophages) to unequivocally demonstrate that HIV-1 does not encode any viral miRNAs. Perhaps surprisingly, we also observed that infection of T cells by HIV-1 has only a modest effect on the expression of cellular miRNAs at early times after infection. Comprehensive analysis of miRNA binding to the HIV-1 genome using the photoactivatable ribonucleoside-induced cross-linking and immunoprecipitation (PAR-CLIP) technique revealed several binding sites for cellular miRNAs, a subset of which were shown to be capable of mediating miRNA-mediated repression of gene expression. However, the main finding from this analysis is that HIV-1 transcripts are largely refractory to miRNA binding, most probably due to extensive viral RNA secondary structure. Together, these data demonstrate that HIV-1 neither encodes viral miRNAs nor strongly influences cellular miRNA expression, at least early after infection, and imply that HIV-1 transcripts have evolved to avoid inhibition by preexisting cellular miRNAs by adopting extensive RNA secondary structures that occlude most potential miRNA binding sites. IMPORTANCE: MicroRNAs (miRNAs) are a ubiquitous class of small regulatory RNAs that serve as posttranscriptional regulators of gene expression. Previous work has suggested that HIV-1 might subvert the function of the cellular miRNA machinery by expressing viral miRNAs or by dramatically altering the level of cellular miRNA expression. Using very sensitive approaches, we now demonstrate that neither of these ideas is in fact correct. Moreover, HIV-1 transcripts appear to largely avoid regulation by cellular miRNAs by adopting an extensive RNA secondary structure that occludes the ability of cellular miRNAs to interact with viral mRNAs. Together, these data suggest that HIV-1, rather than seeking to control miRNA function in infected cells, has instead evolved a mechanism to become largely invisible to cellular miRNA effector mechanisms.
LinkOut: [PMID: 23592263]
CLIP-seq Support 1 for dataset GSM1462574
Method / RBP PAR-CLIP / AGO2
Cell line / Condition TZM-bl / TZM-bl ami BaL
Location of target site ENST00000332674.5 | 3UTR | CCUUUUGGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23592263 / GSE59944
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000332674.5 | 3UTR | UUGGGUUCAAGCAAUUCUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
481 hsa-miR-6808-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058861 VANGL1 VANGL planar cell polarity protein 1 2 6
MIRT065801 HOXC8 homeobox C8 2 6
MIRT108715 XIAP X-linked inhibitor of apoptosis 2 2
MIRT113314 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 2 2
MIRT129749 AGTRAP angiotensin II receptor associated protein 2 2
MIRT140199 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 2 2
MIRT166797 PAPD7 poly(A) RNA polymerase D7, non-canonical 2 4
MIRT180260 PRRG4 proline rich and Gla domain 4 2 2
MIRT307008 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT325577 HIATL1 major facilitator superfamily domain containing 14B 2 4
MIRT370131 TRIB3 tribbles pseudokinase 3 2 2
MIRT370517 ZNRF3 zinc and ring finger 3 2 2
MIRT386083 ZNF609 zinc finger protein 609 2 2
MIRT395059 TNFAIP2 TNF alpha induced protein 2 2 2
MIRT406920 PTBP1 polypyrimidine tract binding protein 1 2 2
MIRT443500 MXI1 MAX interactor 1, dimerization protein 2 4
MIRT443532 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 2 2
MIRT444630 GSPT1 G1 to S phase transition 1 2 2
MIRT446287 C17orf102 chromosome 17 open reading frame 102 2 2
MIRT447170 MFSD8 major facilitator superfamily domain containing 8 2 2
MIRT447914 SLC35E2 solute carrier family 35 member E2 2 2
MIRT448204 B4GALT7 beta-1,4-galactosyltransferase 7 2 4
MIRT451117 RPS19 ribosomal protein S19 2 2
MIRT451467 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like 2 2
MIRT451511 ALOX15 arachidonate 15-lipoxygenase 2 2
MIRT452069 ZNF585B zinc finger protein 585B 2 10
MIRT452224 HAVCR1 hepatitis A virus cellular receptor 1 2 6
MIRT452586 ZFP69B ZFP69 zinc finger protein B 2 2
MIRT452643 PCCB propionyl-CoA carboxylase beta subunit 2 2
MIRT452730 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 4
MIRT452745 PTGES3L prostaglandin E synthase 3 like 2 2
MIRT452772 TCEA3 transcription elongation factor A3 2 4
MIRT452836 FAM131B family with sequence similarity 131 member B 2 2
MIRT452875 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT452884 PRSS45 protease, serine 45 2 2
MIRT452973 ZNF844 zinc finger protein 844 2 6
MIRT453031 ZNF527 zinc finger protein 527 2 4
MIRT453175 CNOT4 CCR4-NOT transcription complex subunit 4 2 6
MIRT453436 GLG1 golgi glycoprotein 1 2 2
MIRT453613 ZNF557 zinc finger protein 557 2 2
MIRT453714 TBX20 T-box 20 2 2
MIRT453916 GABRR2 gamma-aminobutyric acid type A receptor rho2 subunit 2 2
MIRT453974 ATP13A4 ATPase 13A4 2 6
MIRT454075 SLC35E3 solute carrier family 35 member E3 2 2
MIRT454256 CCDC125 coiled-coil domain containing 125 2 2
MIRT454994 RECK reversion inducing cysteine rich protein with kazal motifs 2 2
MIRT455150 TBC1D25 TBC1 domain family member 25 2 2
MIRT455489 NPY4R neuropeptide Y receptor Y4 2 2
MIRT455706 ZMYM1 zinc finger MYM-type containing 1 2 2
MIRT455878 SLC35C2 solute carrier family 35 member C2 2 2
MIRT455954 CYP4A22 cytochrome P450 family 4 subfamily A member 22 2 2
MIRT455978 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT456220 LIX1L limb and CNS expressed 1 like 2 6
MIRT456241 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase 2 6
MIRT456283 HRNR hornerin 2 2
MIRT456743 TMEM239 transmembrane protein 239 2 2
MIRT456927 DDA1 DET1 and DDB1 associated 1 2 2
MIRT457005 ZNF669 zinc finger protein 669 2 4
MIRT457149 MXRA7 matrix remodeling associated 7 2 4
MIRT457348 HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 2 2
MIRT457478 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457553 ZC3H6 zinc finger CCCH-type containing 6 2 2
MIRT457752 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT457990 APAF1 apoptotic peptidase activating factor 1 2 4
MIRT458405 ABCF1 ATP binding cassette subfamily F member 1 2 4
MIRT458468 SNX22 sorting nexin 22 2 6
MIRT458518 GSG2 histone H3 associated protein kinase 2 6
MIRT458564 C10orf71 chromosome 10 open reading frame 71 2 2
MIRT458654 SGPP2 sphingosine-1-phosphate phosphatase 2 2 2
MIRT458753 CES2 carboxylesterase 2 2 2
MIRT458788 ZNF786 zinc finger protein 786 2 2
MIRT458805 CYP8B1 cytochrome P450 family 8 subfamily B member 1 2 2
MIRT458902 PFAS phosphoribosylformylglycinamidine synthase 2 2
MIRT458959 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT459002 KIAA1551 KIAA1551 2 2
MIRT459109 CYP4A11 cytochrome P450 family 4 subfamily A member 11 2 2
MIRT459333 HAVCR2 hepatitis A virus cellular receptor 2 2 2
MIRT459403 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT459557 BTD biotinidase 2 4
MIRT460252 IL17RB interleukin 17 receptor B 2 2
MIRT460369 TXNDC16 thioredoxin domain containing 16 2 4
MIRT460519 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT460707 RNF157 ring finger protein 157 2 2
MIRT460788 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT460806 VPS33A VPS33A, CORVET/HOPS core subunit 2 2
MIRT460845 EGF epidermal growth factor 2 4
MIRT460951 NOA1 nitric oxide associated 1 2 2
MIRT461017 SYT7 synaptotagmin 7 2 2
MIRT461132 RAB36 RAB36, member RAS oncogene family 2 4
MIRT461215 TIPIN TIMELESS interacting protein 2 2
MIRT461408 SLFN12L schlafen family member 12 like 2 8
MIRT461565 SCO1 SCO1, cytochrome c oxidase assembly protein 2 4
MIRT461829 SNAP23 synaptosome associated protein 23 2 2
MIRT461869 ZNF317 zinc finger protein 317 2 2
MIRT462088 MSANTD2 Myb/SANT DNA binding domain containing 2 2 2
MIRT462219 MLH1 mutL homolog 1 2 2
MIRT462438 GTPBP10 GTP binding protein 10 2 4
MIRT462512 MTFMT mitochondrial methionyl-tRNA formyltransferase 2 8
MIRT462542 PLLP plasmolipin 2 4
MIRT462895 ZSCAN29 zinc finger and SCAN domain containing 29 2 4
MIRT462975 ZNF788 zinc finger family member 788 2 2
MIRT463079 ZNF639 zinc finger protein 639 2 4
MIRT463905 WNT7B Wnt family member 7B 2 2
MIRT464126 VPS35 VPS35, retromer complex component 2 2
MIRT464835 UBE2B ubiquitin conjugating enzyme E2 B 2 2
MIRT465532 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465586 TNRC6B trinucleotide repeat containing 6B 2 4
MIRT466097 TMEM184C transmembrane protein 184C 2 2
MIRT466220 TMED10 transmembrane p24 trafficking protein 10 2 2
MIRT466696 TAF13 TATA-box binding protein associated factor 13 2 4
MIRT467019 SSBP2 single stranded DNA binding protein 2 2 4
MIRT467261 SPPL2A signal peptide peptidase like 2A 2 2
MIRT467760 SLC35F1 solute carrier family 35 member F1 2 4
MIRT469015 RNF41 ring finger protein 41 2 2
MIRT469071 RNF20 ring finger protein 20 2 2
MIRT469582 RARA retinoic acid receptor alpha 2 2
MIRT471070 PIM2 Pim-2 proto-oncogene, serine/threonine kinase 2 2
MIRT471480 PDE7B phosphodiesterase 7B 2 2
MIRT471653 PANK2 pantothenate kinase 2 2 4
MIRT471852 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT472327 NF2 neurofibromin 2 2 2
MIRT472838 MTMR10 myotubularin related protein 10 2 4
MIRT473058 MORN4 MORN repeat containing 4 2 6
MIRT473119 MLXIP MLX interacting protein 2 2
MIRT474187 LETMD1 LETM1 domain containing 1 2 2
MIRT474373 KLLN killin, p53-regulated DNA replication inhibitor 2 6
MIRT474445 KLHL18 kelch like family member 18 2 6
MIRT474624 KLF2 Kruppel like factor 2 2 4
MIRT474892 KCTD5 potassium channel tetramerization domain containing 5 2 2
MIRT475293 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT475404 ICMT isoprenylcysteine carboxyl methyltransferase 2 4
MIRT475691 HHIPL1 HHIP like 1 2 2
MIRT476416 GDE1 glycerophosphodiester phosphodiesterase 1 2 8
MIRT476811 FNDC3B fibronectin type III domain containing 3B 2 2
MIRT477083 FAM208A family with sequence similarity 208 member A 2 6
MIRT477654 EFNA1 ephrin A1 2 2
MIRT478232 DDX52 DExD-box helicase 52 2 2
MIRT478491 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT478762 CS citrate synthase 2 2
MIRT478822 CRTAP cartilage associated protein 2 2
MIRT479204 CLCN5 chloride voltage-gated channel 5 2 6
MIRT479306 CFL2 cofilin 2 2 2
MIRT479922 CCDC117 coiled-coil domain containing 117 2 6
MIRT480237 C9orf41 carnosine N-methyltransferase 1 2 2
MIRT480361 C5orf24 chromosome 5 open reading frame 24 2 2
MIRT480736 BPTF bromodomain PHD finger transcription factor 2 2
MIRT481074 B4GALT1 beta-1,4-galactosyltransferase 1 2 2
MIRT481104 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT481272 ATXN7L3 ataxin 7 like 3 2 2
MIRT481438 ASB6 ankyrin repeat and SOCS box containing 6 2 2
MIRT481577 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 2 2
MIRT481625 ARHGAP1 Rho GTPase activating protein 1 2 2
MIRT482263 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT482380 AEN apoptosis enhancing nuclease 2 2
MIRT486076 ARPP19 cAMP regulated phosphoprotein 19 2 4
MIRT486947 DTX2 deltex E3 ubiquitin ligase 2 2 2
MIRT487274 CCNF cyclin F 2 2
MIRT487360 PHF15 jade family PHD finger 2 1 1
MIRT487471 ANKRD42 ankyrin repeat domain 42 2 2
MIRT487532 GXYLT2 glucoside xylosyltransferase 2 2 4
MIRT487975 IQSEC2 IQ motif and Sec7 domain 2 2 2
MIRT489048 PRPF4B pre-mRNA processing factor 4B 2 2
MIRT489071 STARD3 StAR related lipid transfer domain containing 3 2 2
MIRT489725 CALML3 calmodulin like 3 2 2
MIRT490849 ADD2 adducin 2 2 2
MIRT491851 ZBTB7A zinc finger and BTB domain containing 7A 2 2
MIRT492643 PLXNA1 plexin A1 2 2
MIRT492696 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT495462 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT495494 VTI1B vesicle transport through interaction with t-SNAREs 1B 2 2
MIRT495729 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT495775 ZNF546 zinc finger protein 546 2 4
MIRT495807 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT495827 TMEM151A transmembrane protein 151A 2 2
MIRT496079 ATP1B4 ATPase Na+/K+ transporting family member beta 4 2 4
MIRT496103 SNX17 sorting nexin 17 2 2
MIRT496140 RBL1 RB transcriptional corepressor like 1 2 2
MIRT496182 TRIM73 tripartite motif containing 73 2 2
MIRT496236 TRIM74 tripartite motif containing 74 2 2
MIRT496265 SHROOM2 shroom family member 2 2 2
MIRT496280 SLC2A13 solute carrier family 2 member 13 2 2
MIRT496292 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT496500 MAST3 microtubule associated serine/threonine kinase 3 2 2
MIRT496545 EBI3 Epstein-Barr virus induced 3 2 2
MIRT496706 TRIM39 tripartite motif containing 39 2 2
MIRT496799 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT498685 SERPINH1 serpin family H member 1 2 2
MIRT498742 SNTN sentan, cilia apical structure protein 2 6
MIRT500560 XBP1P1 X-box binding protein 1 pseudogene 1 2 8
MIRT503041 CAMSAP2 calmodulin regulated spectrin associated protein family member 2 2 2
MIRT503438 SLC25A45 solute carrier family 25 member 45 2 6
MIRT507273 FERMT2 fermitin family member 2 2 2
MIRT507345 FAM168A family with sequence similarity 168 member A 2 2
MIRT507970 BCL2L13 BCL2 like 13 2 4
MIRT508613 IRAK4 interleukin 1 receptor associated kinase 4 2 6
MIRT508905 PTPLB 3-hydroxyacyl-CoA dehydratase 2 1 1
MIRT510122 IRAK3 interleukin 1 receptor associated kinase 3 2 8
MIRT510471 ZDHHC18 zinc finger DHHC-type containing 18 2 2
MIRT512944 MAP3K7 mitogen-activated protein kinase kinase kinase 7 2 4
MIRT514159 TMEM145 transmembrane protein 145 2 4
MIRT514202 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT517228 PRIM1 DNA primase subunit 1 2 4
MIRT517484 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT517984 DSCR3 DSCR3 arrestin fold containing 2 2
MIRT518736 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT518912 CDC14B cell division cycle 14B 2 2
MIRT520057 YIPF4 Yip1 domain family member 4 2 6
MIRT524625 C7orf73 short transmembrane mitochondrial protein 1 2 2
MIRT524889 ARHGAP11A Rho GTPase activating protein 11A 2 4
MIRT529054 CDK18 cyclin dependent kinase 18 2 2
MIRT531311 GPR26 G protein-coupled receptor 26 2 2
MIRT533554 TPM4 tropomyosin 4 2 2
MIRT534864 RAB15 RAB15, member RAS oncogene family 2 4
MIRT541073 SENP5 SUMO1/sentrin specific peptidase 5 2 2
MIRT544171 HEYL hes related family bHLH transcription factor with YRPW motif-like 2 2
MIRT547847 IGF1R insulin like growth factor 1 receptor 2 2
MIRT548044 GOLIM4 golgi integral membrane protein 4 2 2
MIRT550431 ORC4 origin recognition complex subunit 4 2 2
MIRT550586 SLC2A5 solute carrier family 2 member 5 2 2
MIRT550602 CBY3 chibby family member 3 2 2
MIRT550993 RBM38 RNA binding motif protein 38 2 2
MIRT551343 MRE11A MRE11 homolog, double strand break repair nuclease 2 2
MIRT551376 EPM2AIP1 EPM2A interacting protein 1 2 2
MIRT551399 MRI1 methylthioribose-1-phosphate isomerase 1 2 4
MIRT551594 HDGFRP2 HDGF like 2 2 2
MIRT553095 UBXN2A UBX domain protein 2A 2 4
MIRT554232 SLC17A5 solute carrier family 17 member 5 2 2
MIRT555407 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L 2 2
MIRT557317 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT559321 ATXN1 ataxin 1 2 2
MIRT559663 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT562322 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT563670 SMC4 structural maintenance of chromosomes 4 2 2
MIRT565907 SCAMP2 secretory carrier membrane protein 2 2 2
MIRT569838 SOX11 SRY-box 11 2 2
MIRT570250 CPNE5 copine 5 2 2
MIRT575575 Cd99 CD99 antigen 2 2
MIRT608281 NOP14 NOP14 nucleolar protein 2 2
MIRT610868 ARSA arylsulfatase A 2 2
MIRT614145 THAP1 THAP domain containing 1 2 6
MIRT614602 IRF2BPL interferon regulatory factor 2 binding protein like 2 2
MIRT615239 BROX BRO1 domain and CAAX motif containing 2 2
MIRT617433 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT618182 ZNF681 zinc finger protein 681 2 4
MIRT618886 MBL2 mannose binding lectin 2 2 2
MIRT618988 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT619200 SLC16A4 solute carrier family 16 member 4 2 2
MIRT620327 AQP6 aquaporin 6 2 2
MIRT620461 CENPN centromere protein N 2 2
MIRT621654 UBXN2B UBX domain protein 2B 2 2
MIRT622826 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase 2 4
MIRT623364 LZIC leucine zipper and CTNNBIP1 domain containing 2 2
MIRT624934 FBXW2 F-box and WD repeat domain containing 2 2 2
MIRT624990 ZNF665 zinc finger protein 665 2 4
MIRT625501 SMAD9 SMAD family member 9 2 2
MIRT625603 KLHL23 kelch like family member 23 2 2
MIRT625672 C2orf48 chromosome 2 open reading frame 48 2 2
MIRT625892 INADL PATJ, crumbs cell polarity complex component 2 2
MIRT626242 ZNF749 zinc finger protein 749 2 2
MIRT626635 SLC30A6 solute carrier family 30 member 6 2 2
MIRT626998 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT627472 STX7 syntaxin 7 2 2
MIRT627686 RPL28 ribosomal protein L28 2 2
MIRT627902 OLFML2A olfactomedin like 2A 2 2
MIRT627992 NDRG3 NDRG family member 3 2 2
MIRT628328 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin 2 2
MIRT628349 CCDC68 coiled-coil domain containing 68 2 2
MIRT630198 TLN1 talin 1 2 2
MIRT631961 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 2 4
MIRT633402 FBXW8 F-box and WD repeat domain containing 8 2 2
MIRT633844 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules 2 2
MIRT635393 NHLRC2 NHL repeat containing 2 2 2
MIRT635807 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT636374 OGFRL1 opioid growth factor receptor like 1 2 2
MIRT638671 GGCX gamma-glutamyl carboxylase 2 2
MIRT639200 TRAPPC2 trafficking protein particle complex 2 2 2
MIRT639603 CD3EAP CD3e molecule associated protein 2 2
MIRT639684 PPEF2 protein phosphatase with EF-hand domain 2 2 6
MIRT642237 RABAC1 Rab acceptor 1 2 2
MIRT642381 ZNF581 zinc finger protein 581 2 2
MIRT645778 RAB3B RAB3B, member RAS oncogene family 2 2
MIRT647078 BRIX1 BRX1, biogenesis of ribosomes 2 4
MIRT647329 RPH3AL rabphilin 3A like (without C2 domains) 2 2
MIRT649010 MRPL49 mitochondrial ribosomal protein L49 2 2
MIRT650461 ZNF141 zinc finger protein 141 2 2
MIRT650537 CCDC77 coiled-coil domain containing 77 2 4
MIRT651002 ZNF770 zinc finger protein 770 2 2
MIRT651749 VEGFB vascular endothelial growth factor B 2 2
MIRT655737 NRXN3 neurexin 3 2 2
MIRT657580 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT658636 ENAH ENAH, actin regulator 2 2
MIRT659824 CASP16 caspase 16, pseudogene 2 2
MIRT660479 ARSK arylsulfatase family member K 2 2
MIRT661146 ZNF43 zinc finger protein 43 2 2
MIRT661205 MPPE1 metallophosphoesterase 1 2 2
MIRT661440 MANSC1 MANSC domain containing 1 2 2
MIRT661553 ZNF674 zinc finger protein 674 2 4
MIRT661687 ZNF623 zinc finger protein 623 2 2
MIRT661812 NUP85 nucleoporin 85 2 2
MIRT661865 ZNF766 zinc finger protein 766 2 2
MIRT662142 ZC3H8 zinc finger CCCH-type containing 8 2 2
MIRT662295 SLC29A4 solute carrier family 29 member 4 2 2
MIRT662519 ANGPT4 angiopoietin 4 2 2
MIRT662720 C10orf111 chromosome 10 open reading frame 111 2 4
MIRT662838 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT662894 PCDHA6 protocadherin alpha 6 2 2
MIRT663007 TMEM59 transmembrane protein 59 2 2
MIRT663247 MPHOSPH8 M-phase phosphoprotein 8 2 2
MIRT663432 ZNF607 zinc finger protein 607 2 2
MIRT663714 ABHD17B abhydrolase domain containing 17B 2 2
MIRT663837 AGBL5 ATP/GTP binding protein like 5 2 4
MIRT663873 MUC20 mucin 20, cell surface associated 2 2
MIRT664271 NMUR1 neuromedin U receptor 1 2 2
MIRT664853 HUS1 HUS1 checkpoint clamp component 2 2
MIRT664948 CARD6 caspase recruitment domain family member 6 2 4
MIRT665519 UTP15 UTP15, small subunit processome component 2 2
MIRT665652 TRPM7 transient receptor potential cation channel subfamily M member 7 2 2
MIRT665672 TRAF1 TNF receptor associated factor 1 2 2
MIRT665697 TNPO3 transportin 3 2 2
MIRT665854 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT665944 TBC1D19 TBC1 domain family member 19 2 4
MIRT666009 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT666110 SSR1 signal sequence receptor subunit 1 2 2
MIRT666176 SNX27 sorting nexin family member 27 2 4
MIRT666377 SHOX short stature homeobox 2 2
MIRT667008 PDPN podoplanin 2 4
MIRT667189 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667608 LIPC lipase C, hepatic type 2 2
MIRT667832 IRGQ immunity related GTPase Q 2 2
MIRT667866 IPCEF1 interaction protein for cytohesin exchange factors 1 2 2
MIRT668300 FOSL2 FOS like 2, AP-1 transcription factor subunit 2 4
MIRT668584 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 4
MIRT669016 CHORDC1 cysteine and histidine rich domain containing 1 2 2
MIRT669107 CDK19 cyclin dependent kinase 19 2 2
MIRT670077 ZNF783 zinc finger family member 783 2 2
MIRT670968 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 4
MIRT671199 ZNF891 zinc finger protein 891 2 2
MIRT671414 ERCC6L2 ERCC excision repair 6 like 2 2 2
MIRT671750 ZNF451 zinc finger protein 451 2 2
MIRT672051 SMTNL2 smoothelin like 2 2 2
MIRT672589 RNF24 ring finger protein 24 2 2
MIRT673456 ZNF583 zinc finger protein 583 2 2
MIRT673921 DCTN6 dynactin subunit 6 2 2
MIRT673956 ZNF500 zinc finger protein 500 2 2
MIRT674171 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674210 FUT2 fucosyltransferase 2 2 2
MIRT674691 PLCE1 phospholipase C epsilon 1 2 2
MIRT675251 MAK male germ cell associated kinase 2 2
MIRT675365 KLHL26 kelch like family member 26 2 2
MIRT676016 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT678297 PTRH2 peptidyl-tRNA hydrolase 2 2 2
MIRT680264 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 2 2
MIRT680944 EVC EvC ciliary complex subunit 1 2 2
MIRT680968 SLC15A1 solute carrier family 15 member 1 2 4
MIRT681069 PAQR7 progestin and adipoQ receptor family member 7 2 2
MIRT681213 ZNF638 zinc finger protein 638 2 2
MIRT681578 ABHD15 abhydrolase domain containing 15 2 2
MIRT681601 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide 2 2
MIRT681916 SLC11A2 solute carrier family 11 member 2 2 2
MIRT682041 AGXT2 alanine--glyoxylate aminotransferase 2 2 4
MIRT682344 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 4
MIRT682669 CASP8 caspase 8 2 2
MIRT683287 ZNF99 zinc finger protein 99 2 2
MIRT683363 SCARF1 scavenger receptor class F member 1 2 2
MIRT683457 ACOT2 acyl-CoA thioesterase 2 2 2
MIRT683600 GSTCD glutathione S-transferase C-terminal domain containing 2 2
MIRT683665 ZNF695 zinc finger protein 695 2 2
MIRT683740 EIF3L eukaryotic translation initiation factor 3 subunit L 2 2
MIRT683774 CPE carboxypeptidase E 2 2
MIRT683811 NOTO notochord homeobox 2 2
MIRT684466 MFSD4 major facilitator superfamily domain containing 4A 2 2
MIRT684529 C1orf174 chromosome 1 open reading frame 174 2 2
MIRT684989 MINOS1 mitochondrial inner membrane organizing system 1 2 2
MIRT685016 CXorf56 chromosome X open reading frame 56 2 2
MIRT685119 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) 2 2
MIRT685481 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT686014 NEK4 NIMA related kinase 4 2 2
MIRT686036 UMPS uridine monophosphate synthetase 2 2
MIRT686563 TPM3 tropomyosin 3 2 2
MIRT686734 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT686970 SFT2D2 SFT2 domain containing 2 2 2
MIRT687291 PARP2 poly(ADP-ribose) polymerase 2 2 2
MIRT687340 OSBPL2 oxysterol binding protein like 2 2 2
MIRT687558 MLEC malectin 2 2
MIRT687762 KIAA1328 KIAA1328 2 2
MIRT688089 GLUL glutamate-ammonia ligase 2 2
MIRT688605 CYCS cytochrome c, somatic 2 2
MIRT688925 C11orf84 chromosome 11 open reading frame 84 2 2
MIRT689289 C5AR2 complement component 5a receptor 2 2 2
MIRT689446 CYB561 cytochrome b561 2 2
MIRT689559 XPO6 exportin 6 2 2
MIRT690055 C6orf141 chromosome 6 open reading frame 141 2 2
MIRT690208 C5orf45 MRN complex interacting protein 2 2
MIRT690275 CAMLG calcium modulating ligand 2 2
MIRT690335 MRPS30 mitochondrial ribosomal protein S30 2 2
MIRT690530 ZNF566 zinc finger protein 566 2 2
MIRT690585 MICA MHC class I polypeptide-related sequence A 2 2
MIRT690877 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT691162 APOL6 apolipoprotein L6 2 2
MIRT691292 CENPM centromere protein M 2 2
MIRT691768 BCL2L15 BCL2 like 15 2 2
MIRT691786 SLC24A4 solute carrier family 24 member 4 2 2
MIRT691837 TMCO1 transmembrane and coiled-coil domains 1 2 2
MIRT691972 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 2 2
MIRT692051 PAK1IP1 PAK1 interacting protein 1 2 2
MIRT692197 POLR1E RNA polymerase I subunit E 2 2
MIRT692771 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 2 2
MIRT692863 ZSWIM1 zinc finger SWIM-type containing 1 2 2
MIRT693076 AS3MT arsenite methyltransferase 2 2
MIRT693125 SCNM1 sodium channel modifier 1 2 2
MIRT693182 NPR1 natriuretic peptide receptor 1 2 2
MIRT693518 MOB3A MOB kinase activator 3A 2 2
MIRT693579 PIGR polymeric immunoglobulin receptor 2 2
MIRT693803 RHOG ras homolog family member G 2 2
MIRT694082 RNASEH2B ribonuclease H2 subunit B 2 2
MIRT694167 SLC36A2 solute carrier family 36 member 2 2 2
MIRT694266 RGS9BP regulator of G protein signaling 9 binding protein 2 2
MIRT694560 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 2 2
MIRT694783 BVES blood vessel epicardial substance 2 2
MIRT695049 ALG10B ALG10B, alpha-1,2-glucosyltransferase 2 2
MIRT695438 TCF23 transcription factor 23 2 2
MIRT695570 ZNF562 zinc finger protein 562 2 2
MIRT696372 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma 2 2
MIRT696537 C3 complement C3 2 2
MIRT696582 TTC21B tetratricopeptide repeat domain 21B 2 2
MIRT696783 DHODH dihydroorotate dehydrogenase (quinone) 2 2
MIRT697079 PSMC4 proteasome 26S subunit, ATPase 4 2 2
MIRT697108 GPKOW G-patch domain and KOW motifs 2 2
MIRT697464 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT697502 ZBTB8B zinc finger and BTB domain containing 8B 2 2
MIRT697634 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT697971 TSPYL1 TSPY like 1 2 2
MIRT698375 TMED4 transmembrane p24 trafficking protein 4 2 2
MIRT698563 TFDP2 transcription factor Dp-2 2 2
MIRT698978 SPAST spastin 2 2
MIRT699051 SOAT1 sterol O-acyltransferase 1 2 2
MIRT699099 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 2 2
MIRT699494 SLC10A6 solute carrier family 10 member 6 2 2
MIRT699590 SIKE1 suppressor of IKBKE 1 2 2
MIRT699609 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT700156 RNF115 ring finger protein 115 2 2
MIRT700422 QDPR quinoid dihydropteridine reductase 2 2
MIRT700474 PURB purine rich element binding protein B 2 2
MIRT700550 PTBP2 polypyrimidine tract binding protein 2 2 2
MIRT700778 PLA2G4A phospholipase A2 group IVA 2 2
MIRT700879 PER2 period circadian clock 2 2 2
MIRT700956 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 2 2
MIRT701176 PACS2 phosphofurin acidic cluster sorting protein 2 2 2
MIRT701285 NUP210 nucleoporin 210 2 2
MIRT701483 NEK9 NIMA related kinase 9 2 2
MIRT701665 MYH9 myosin heavy chain 9 2 2
MIRT701783 MSL2 MSL complex subunit 2 2 2
MIRT701794 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT702798 IFNAR2 interferon alpha and beta receptor subunit 2 2 2
MIRT703130 GPRC5A G protein-coupled receptor class C group 5 member A 2 2
MIRT703257 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT703400 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT703451 FYTTD1 forty-two-three domain containing 1 2 2
MIRT703661 FAM60A SIN3-HDAC complex associated factor 2 2
MIRT703769 FAM118A family with sequence similarity 118 member A 2 2
MIRT703866 ERN1 endoplasmic reticulum to nucleus signaling 1 2 2
MIRT704668 CLCC1 chloride channel CLIC like 1 2 2
MIRT704816 CDC73 cell division cycle 73 2 2
MIRT704952 CCDC120 coiled-coil domain containing 120 2 2
MIRT705548 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT705629 AP1S3 adaptor related protein complex 1 sigma 3 subunit 2 2
MIRT705686 ANKRD40 ankyrin repeat domain 40 2 2
MIRT706242 SYT15 synaptotagmin 15 2 2
MIRT706571 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 2 2
MIRT706693 COL13A1 collagen type XIII alpha 1 chain 2 2
MIRT708930 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT708950 FZR1 fizzy and cell division cycle 20 related 1 2 2
MIRT710613 ZNF555 zinc finger protein 555 2 2
MIRT711721 IREB2 iron responsive element binding protein 2 2 2
MIRT713161 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT714471 KLF13 Kruppel like factor 13 2 2
MIRT716875 PTK2B protein tyrosine kinase 2 beta 2 2
MIRT717148 DLEU1 deleted in lymphocytic leukemia 1 (non-protein coding) 2 2
MIRT717995 C9orf171 cilia and flagella associated protein 77 2 2
MIRT724122 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT725317 NLRC5 NLR family CARD domain containing 5 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-6808-5p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-6808-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (BAS)
hsa-miR-6808-5p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)

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