miRTarBase - #MIRT443769


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pre-miRNA Information
pre-miRNA hsa-mir-664a   
Genomic Coordinates chr1: 220200538 - 220200619
Description Homo sapiens miR-664 stem-loop
Comment This miRNA sequence overlaps an annotated snoRNA, ACA38b. However, both miR and miR* sequences are identified in reference , and the sequence is homologous with rat mir-664.
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-664a-3p
Sequence 49| UAUUCAUUUAUCCCCAGCCUACA |71
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30457627 12 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1478242335 2 dbSNP
rs1042905485 5 dbSNP
rs908858734 6 dbSNP
rs1229753248 8 dbSNP
rs770101636 12 dbSNP
rs746047168 14 dbSNP
rs1170225715 15 dbSNP
rs1404740911 16 dbSNP
rs1393962832 17 dbSNP
rs1377901643 18 dbSNP
rs1313271494 19 dbSNP
rs1416447585 20 dbSNP
rs1368463251 21 dbSNP
rs1167925254 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HLF   
Synonyms -
Description HLF, PAR bZIP transcription factor
Transcript NM_002126   
Expression
Putative miRNA Targets on HLF
3'UTR of HLF
(miRNA target sites are highlighted)		 
>HLF|NM_002126|3'UTR
   1 GATGGCATTTTTGCAGGCTGGCTTTGGAATAGATGGACAGTTTGTTTCCTGTCTGATAGCACCACACGCAAACCAACCTT
  81 TCTGACATCAGCACTTTACCAGAGGCATAAACACAACTGACTCCCATTTTGGTGTGCATCTGTGTGTGTGTGCGTGTATA
 161 TGTGCTTGTGCTCATGTGTGTGGTCAGCGGTATGTGCGTGTGCGTGTTCCTTTGCTCTTGCCATTTTAAGGTAGCCCTCT
 241 CATCGTCTTTTAGTTCCAACAAAGAAAGGTGCCATGTCTTTACTAGACTGAGGAGCCCTCTCGCGGGTCTCCCATCCCCT
 321 CCCTCCTTCACTCCTGCCTCCTCAGCTTTGCTTCATGTTCGAGCTTACCTACTCTTCCAGGACTCTCTGCTTGGATTCAC
 401 TAAAAAGGGCCCTGGTAAAATAGTGGATCTCAGTTTTTAAGAGTACAAGCTCTTGTTTCTGTTTAGTCCGTAAGTTACCA
 481 TGCTAATGAGGTGCACACAATAACTTAGCACTACTCCGCAGCTCTAGTCCTTTATAAGTTGCTTTCCTCTTACTTTCAGT
 561 TTTGGTGATAATCGTCTTCAAATTAAAGTGCTGTTTAGATTTATTAGATCCCATATTTACTTACTGCTATCTACTAAGTT
 641 TCCTTTTAATTCTACCAACCCCAGATAAGTAAGAGTACTATTAATAGAACACAGAGTGTGTTTTTGCACTGTCTGTACCT
 721 AAAGCAATAATCCTATTGTACGCTAGAGCATGCTGCCTGAGTATTACTAGTGGACGTAGGATATTTTCCCTACCTAAGAA
 801 TTTCACTGTCTTTTAAAAAACAAAAAGTAAAGTAATGCATTTGAGCATGGCCAGACTATTCCCTAGGACAAGGAAGCAGA
 881 GGGAAATGGGAGGTCTAAGGATGAGGGGTTAATTTATCAGTACATGAGCCAAAAACTGCGTCTTGGATTAGCCTTTGACA
 961 TTGATGTGTTCGGTTTTGTTGTTCCCCTTCCCTCACACCCTGCCTCGCCCCCACTTTTCTAGTTAACTTTTTCCATATCC
1041 CTCTTGACATTCAAAACAGTTACTTAAGATTCAGTTTTCCCACTTTTTGGTAATATATATATTTTTGTGAATTATACTTT
1121 GTTGTTTTTAAAAAGAAAATCAGTTGATTAAGTTAATAAGTTGATGTTTTCTAAGGCCCTTTTTCCTAGTGGTGTCATTT
1201 TTGAATGCCTCATAAATTAATGATTCTGAAGCTTATGTTTCTTATTCTCTGTTTGCTTTTGAACGTATGTGCTCTTATAA
1281 AGTGGACTTCTGAAAAATGAATGTAAAAGACACTGGTGTATCTCAGAAGGGGATGGTGTTGTCACAAACTGTGGTTAATC
1361 CAATCAATTTAAATGTTTACTATAGACCAAAAGGAGAGATTATTAAATCGTTTAATGTTTATACAGAGTAATTATAGGAA
1441 GTTCTTTTTTGTACAGTATTTTTCAGATATAAATACTGACAATGTATTTTGGAAGACATATATTATATATAGAAAAGAGG
1521 AGAGGAAAACTATTCCATGTTTTAAAATTATATAGCAAAGATATATATTCACCAATGTTGTACAGAGAAGAAGTGCTTGG
1601 GGGTTTTTGAAGTCTTTAATATTTTAAGCCCTATCACTGACACATCAGCATGTTTTCTGCTTTAAATTAAAATTTTATGA
1681 CAGTATCGAGGCTTGTGATGACGAATCCTGCTCTAAAATACACAAGGAGCTTTCTTGTTTCTTATTAGGCCTCAGAAAGA
1761 AGTCAGTTAACGTCACCCAAAAGCACAAAATGGATTTTAGTCAAATATTTATTGGATGATACAGTGTTTTTTAGGAAAAG
1841 CATCTGCCACAAAAATGTTCACTTCGAAATTCTGAGTTCCTGGAATGGCACGTTGCTGCCAGTGCCCCAGACAGTTCTTT
1921 TCTACCCTGCGGGCCCGCACGTTTTATGAGGTTGATATCGGTGCTATGTGTTTGGTTTATAATTTGATAGATGTTTGACT
2001 TTAAAGATGATTGTTCTTTTGTTTCATTAAGTTGTAAAATGTCAAGAAATTCTGCTGTTACGACAAAGAAACATTTTACG
2081 CTAGATTAAAATATCCTTTCATCAATGGGATTTTCTAGTTTCCTGCCTTCAGAGTATCTAATCCTTTAATGATCTGGTGG
2161 TCTCCTCGTCAATCCATCAGCAATGCTTCTCTCATAGTGTCATAGACTTGGGAAACCCAACCAGTAGGATATTTCTACAA
2241 GGTGTTCATTTTGTCACAAGCTGTAGATAACAGCAAGAGATGGGGGTGTATTGGAATTGCAATACATTGTTCAGGTGAAT
2321 AATAAAATCAAAAACTTTTGCAATCTTAAGCAGAGATAAATAAAAGATAGCAATATGAGACACAGGTGGACGTAGAGTTG
2401 GCCTTTTTACAGGCAAAGAGGCGAATTGTAGAATTGTTAGATGGCAATAGTCATTAAAAACATAGAAAAATGATGTCTTT
2481 AAGTGGAGAATTGTGGAAGGATTGTAACATGGACCATCCAAATTTATGGCCGTATCAAATGGTAGCTGAAAAAACTATAT
2561 TTGAGCACTGGTCTCTCTTGGAATTAGATGTTTATATCAAATGAGCATCTCAAATGTTTTCTGCAGAAAAAAATAAAAAG
2641 ATTCTAATAAAATGTATTCTCTTGTGTGCCAGGAGAGGTTTCAGAAACCTACCTCGTCTTACAAATTTAAACACTTTGGA
2721 GTCTGTACAGGTGCCTTATATGTAGGTCATTGTCACGATACACACACACGAACACTCCCTCTGGACTGGCTGCCTCTCCA
2801 TCCAGGGCAGTTAACTAGCAAACAAGGCAGATCTGCTTCATGGAGCGGGAGGCCATGGCTTGACTCTGAGTGATTTGGGT
2881 CAACCGGAGTCAGACGCATGTCTGCACGCTGCAGCTATTATGAGAGTCCCTTTGTCATTTTTCACCTTTTCATCCTAAGC
2961 ATCTTTCAGAGATTAATTATTTGGCCATTAACAATGAATCCAAATCATATCATACTGACATCATCTAGACATGATTTGGA
3041 AGGAACAGCTTAGGACCTCCTGATGAGGTCACATTGTTGTTTCTTTTAACTAGACTTGGCAAAGAAAGGCAAAAATTGAC
3121 CAGCCTATCTTTCTGCTGGTGCTGCCTTAAGGAGGTAGTTTGTTGAGGGGAGGGCTGTAGATCATTACTTCTTTCTCTTC
3201 AGGAAGTGGCCACTTTGAACCATTCAAATACCACATTAGGCAAGACTGTGATAGGCCTTTTGTCTTCAAATACAACAGGC
3281 CTCCACTGACCCATCCCTCAAAGCAGAAGGACCCTTTGAGGAGAGTACAGATGGGATTCCACAGTGGGGTGGGTGGAATG
3361 GAAACCTGTACTAGACCACCCAGAGGTTCCTTCTAACCCACTGGTTTGGTGGGGAACTCACAGTAATTCCAAATGTACAA
3441 TCAGATGTCTAGGGTCTGTTTTCGGAAGAAGCAAGAATTATCAGTGGCACCCTCCCCACTGCCCCCAGTGTAAAACAATA
3521 GACATTCTGTGAAATGCAAAGCTATTCTTTGGTTTTTCTAGTAGTTTATCTCATTTTACCCTATTCTTCCTTTAAGGAAA
3601 ACTCAATCTTTATCACAGTCAATTAGAGCGATCCCAAGGCATGGGACCAGGCCTGCTTGCCTATGTGTGATGGCAATTGG
3681 AGATCTGGATTTAGCACTGGGGTCTCAGCACCCTGCAGGTGTCTGAGACTAAGTGATCTGCCCTCCAGGTGGCGATCACC
3761 TTCTGCTCCTAGGTACCCCCACTGGCAAGGCCAAGGTCTCCTCCACGTTTTTTCTGCAATTAATAATGTCATTTAAAAAA
3841 TGAGCAAAGCCTTATCCGAATCGGATATAGCAACTAAAGTCAATACATTTTGCAGGAGGCTAAGTGTAAGAGTGTGTGTG
3921 TGTGTGTGTGCGTGCATGTGTGTGTGTGTGTATGTGTGTGAATAAGTCGACATAAAGTCTTTAATTTTGAGCACCTTACC
4001 AAACATAACAATAATCCATTATCCTTTTGGCAACACCACAAAGATCGCATCTGTTAAACAGGTACAAGTTGACATGAGGT
4081 TAGTTTAATTGTACACCATGATATTGGTGGTATTTATGCTGTTAAGTCCAAACCTTTATCTGTCTGTTATTCTTAATGTT
4161 GAATAAACTTTGAATTTTTTCCTTTCAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' acAUCCGACCCCUAUUUACUUAu 5'
            |:| ||   || |||||||| 
Target 5' agTGGACTTCTGAAAAATGAATg 3'
 1281 - 1303 161.00 -11.70
2 
miRNA  3' acAUCCGACCCCUAUUUACUUau 5'
            |:|| |||| : :||||:|  
Target 5' agTGGGGTGGGTG-GAATGGAaa 3'
 3343 - 3364 128.00 -19.40
3 
miRNA  3' acaUCCGACC----CC-UAUUUACUUau 5'
             |||||||    || |||:|||:|  
Target 5' tgcAGGCTGGCTTTGGAATAGATGGAca 3'
 12 - 39 126.00 -18.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN18715951 53 COSMIC
COSN30529430 94 COSMIC
COSN30105391 112 COSMIC
COSN30122984 135 COSMIC
COSN26436246 138 COSMIC
COSN31532126 153 COSMIC
COSN28891781 154 COSMIC
COSN31543865 190 COSMIC
COSN28646563 220 COSMIC
COSN1723357 342 COSMIC
COSN26669537 494 COSMIC
COSN31515785 653 COSMIC
COSN9671118 698 COSMIC
COSN19660438 738 COSMIC
COSN31552060 1008 COSMIC
COSN31482021 1053 COSMIC
COSN31530511 1172 COSMIC
COSN30544615 1265 COSMIC
COSN31519780 1401 COSMIC
COSN31608501 1413 COSMIC
COSN31595986 1424 COSMIC
COSN31480886 1439 COSMIC
COSN26586735 1452 COSMIC
COSN31535548 1502 COSMIC
COSN29188031 1615 COSMIC
COSN1198767 1644 COSMIC
COSN31571925 1866 COSMIC
COSN31591977 1922 COSMIC
COSN7440075 1952 COSMIC
COSN22112058 1981 COSMIC
COSN27081494 2169 COSMIC
COSN17340447 2624 COSMIC
COSN17342051 2626 COSMIC
COSN17345215 2628 COSMIC
COSN20114207 2682 COSMIC
COSN31577609 2847 COSMIC
COSN31533225 2879 COSMIC
COSN17960408 3175 COSMIC
COSN6107252 3201 COSMIC
COSN24890009 3226 COSMIC
COSN4769742 3373 COSMIC
COSN1723359 3602 COSMIC
COSN29232396 3766 COSMIC
COSN5801206 3808 COSMIC
COSN8839887 3928 COSMIC
COSN23814891 3931 COSMIC
COSN28019498 3951 COSMIC
COSN31607591 4047 COSMIC
COSN31515042 4048 COSMIC
COSN30540107 4084 COSMIC
COSN30176191 4098 COSMIC
rs12940636 1871 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs35027045 4 dbSNP
rs754201842 16 dbSNP
rs757703411 17 dbSNP
rs370788919 21 dbSNP
rs1368414204 22 dbSNP
rs765697022 27 dbSNP
rs1170639483 30 dbSNP
rs751153829 34 dbSNP
rs1413239437 36 dbSNP
rs754705390 38 dbSNP
rs1307151584 39 dbSNP
rs1274426620 42 dbSNP
rs374209453 44 dbSNP
rs368420702 45 dbSNP
rs755994491 49 dbSNP
rs1339870199 52 dbSNP
rs185750020 67 dbSNP
rs1326921127 68 dbSNP
rs559216184 69 dbSNP
rs1369845075 72 dbSNP
rs1174222596 77 dbSNP
rs57573346 85 dbSNP
rs919033042 95 dbSNP
rs969418636 100 dbSNP
rs773936419 105 dbSNP
rs1234300440 115 dbSNP
rs1202369704 116 dbSNP
rs1482459447 117 dbSNP
rs745422651 118 dbSNP
rs987112281 133 dbSNP
rs1310741353 134 dbSNP
rs960012490 140 dbSNP
rs370473898 141 dbSNP
rs992932233 141 dbSNP
rs912785389 142 dbSNP
rs944305922 143 dbSNP
rs975953359 150 dbSNP
rs1356204415 151 dbSNP
rs1313356891 153 dbSNP
rs947877825 154 dbSNP
rs1199953877 155 dbSNP
rs1175060171 157 dbSNP
rs1401112145 157 dbSNP
rs921435018 159 dbSNP
rs936863344 169 dbSNP
rs762211046 171 dbSNP
rs116777308 174 dbSNP
rs1257607325 174 dbSNP
rs775354412 176 dbSNP
rs760536393 178 dbSNP
rs1482555345 181 dbSNP
rs1036262938 183 dbSNP
rs569602529 190 dbSNP
rs997108897 192 dbSNP
rs945334950 197 dbSNP
rs1228033082 198 dbSNP
rs1335481026 199 dbSNP
rs1046396498 204 dbSNP
rs1413062824 205 dbSNP
rs888823772 209 dbSNP
rs1302221396 217 dbSNP
rs17746075 220 dbSNP
rs1156415438 232 dbSNP
rs1002116789 243 dbSNP
rs377050749 245 dbSNP
rs904679235 246 dbSNP
rs999538459 252 dbSNP
rs145474366 259 dbSNP
rs1187640989 263 dbSNP
rs1487022673 265 dbSNP
rs1171701189 275 dbSNP
rs761829513 280 dbSNP
rs1208554074 284 dbSNP
rs994659896 294 dbSNP
rs879525353 303 dbSNP
rs1242639768 304 dbSNP
rs950492207 305 dbSNP
rs1328432060 312 dbSNP
rs567759534 313 dbSNP
rs992794431 322 dbSNP
rs987061261 324 dbSNP
rs1023058467 334 dbSNP
rs535227262 339 dbSNP
rs970170047 344 dbSNP
rs1318290430 345 dbSNP
rs1434142982 347 dbSNP
rs1394734618 351 dbSNP
rs984208864 352 dbSNP
rs909061595 357 dbSNP
rs941849070 359 dbSNP
rs964766594 361 dbSNP
rs975689237 362 dbSNP
rs1188306338 364 dbSNP
rs1469210094 367 dbSNP
rs1208293491 372 dbSNP
rs1255081048 372 dbSNP
rs921538322 373 dbSNP
rs1488165877 378 dbSNP
rs972403137 382 dbSNP
rs1359387644 388 dbSNP
rs1206797847 391 dbSNP
rs1344185701 393 dbSNP
rs1295379177 401 dbSNP
rs1220045001 427 dbSNP
rs1227331434 434 dbSNP
rs936792961 447 dbSNP
rs760978184 456 dbSNP
rs1302865462 459 dbSNP
rs1384726018 465 dbSNP
rs1389634007 468 dbSNP
rs1298242632 470 dbSNP
rs1463116683 471 dbSNP
rs1369197424 473 dbSNP
rs1168548371 484 dbSNP
rs1266867713 486 dbSNP
rs1454929798 487 dbSNP
rs1397289115 491 dbSNP
rs1197271558 494 dbSNP
rs780313775 498 dbSNP
rs1251564154 501 dbSNP
rs913948195 516 dbSNP
rs932988725 517 dbSNP
rs1179001970 518 dbSNP
rs765134373 519 dbSNP
rs190269500 522 dbSNP
rs571954904 523 dbSNP
rs138015566 527 dbSNP
rs1348252041 529 dbSNP
rs1046949564 532 dbSNP
rs750482879 540 dbSNP
rs938031897 546 dbSNP
rs1230873867 549 dbSNP
rs943144147 553 dbSNP
rs1307294419 554 dbSNP
rs1411089209 561 dbSNP
rs1348093892 566 dbSNP
rs1211352510 571 dbSNP
rs180907179 574 dbSNP
rs1452158578 575 dbSNP
rs1055039303 590 dbSNP
rs1214770751 594 dbSNP
rs899101668 597 dbSNP
rs994607676 608 dbSNP
rs904709323 614 dbSNP
rs1478695810 628 dbSNP
rs1364551040 630 dbSNP
rs1161593709 632 dbSNP
rs1471611901 635 dbSNP
rs1194587206 644 dbSNP
rs1251186555 644 dbSNP
rs73314567 655 dbSNP
rs756336006 656 dbSNP
rs1258224113 660 dbSNP
rs1198469389 672 dbSNP
rs896032296 673 dbSNP
rs1474262656 676 dbSNP
rs763009788 678 dbSNP
rs141943252 682 dbSNP
rs1326710521 683 dbSNP
rs763592963 689 dbSNP
rs1414912299 693 dbSNP
rs370251841 698 dbSNP
rs1400675097 699 dbSNP
rs1332796960 701 dbSNP
rs1395766424 709 dbSNP
rs1316880822 712 dbSNP
rs557094001 719 dbSNP
rs1455827692 723 dbSNP
rs766574424 726 dbSNP
rs964392455 728 dbSNP
rs1165702786 742 dbSNP
rs974825774 743 dbSNP
rs1185340287 745 dbSNP
rs1441578266 764 dbSNP
rs1262155294 770 dbSNP
rs1210433261 776 dbSNP
rs1028549714 777 dbSNP
rs958278238 786 dbSNP
rs963550756 790 dbSNP
rs144119921 793 dbSNP
rs914064713 797 dbSNP
rs1244715287 803 dbSNP
rs919086944 810 dbSNP
rs1322961916 811 dbSNP
rs751794864 824 dbSNP
rs1433395757 825 dbSNP
rs1388148411 830 dbSNP
rs1326869129 837 dbSNP
rs566036092 880 dbSNP
rs982199562 882 dbSNP
rs1285488640 883 dbSNP
rs1407092328 887 dbSNP
rs928066731 891 dbSNP
rs987338413 893 dbSNP
rs184134982 897 dbSNP
rs943027822 916 dbSNP
rs1055554869 920 dbSNP
rs1043213024 924 dbSNP
rs904239023 925 dbSNP
rs1246986980 937 dbSNP
rs920473716 940 dbSNP
rs781569922 941 dbSNP
rs16955858 961 dbSNP
rs530118352 966 dbSNP
rs1484839628 967 dbSNP
rs573543180 972 dbSNP
rs1009172067 973 dbSNP
rs1226602711 974 dbSNP
rs1044644976 985 dbSNP
rs1304370990 987 dbSNP
rs1438861973 995 dbSNP
rs1348424590 999 dbSNP
rs1322940343 1006 dbSNP
rs1040111371 1007 dbSNP
rs77554004 1008 dbSNP
rs1427507785 1023 dbSNP
rs995815941 1023 dbSNP
rs1410804260 1028 dbSNP
rs753918729 1030 dbSNP
rs1389333462 1031 dbSNP
rs1005516367 1032 dbSNP
rs1017436519 1034 dbSNP
rs1244659021 1036 dbSNP
rs1032684862 1038 dbSNP
rs1197517729 1043 dbSNP
rs28395246 1049 dbSNP
rs994650347 1052 dbSNP
rs1026130883 1059 dbSNP
rs56206203 1060 dbSNP
rs1342150003 1064 dbSNP
rs1011159795 1072 dbSNP
rs745382652 1075 dbSNP
rs1335809078 1080 dbSNP
rs987369507 1096 dbSNP
rs1274508991 1115 dbSNP
rs1340491961 1121 dbSNP
rs189994008 1122 dbSNP
rs1440848662 1132 dbSNP
rs966890215 1135 dbSNP
rs910442006 1141 dbSNP
rs756916178 1144 dbSNP
rs1369942185 1147 dbSNP
rs1355836385 1148 dbSNP
rs982702278 1152 dbSNP
rs545252101 1157 dbSNP
rs1279388582 1165 dbSNP
rs1422555360 1171 dbSNP
rs1171648050 1173 dbSNP
rs1345502054 1174 dbSNP
rs1253329405 1175 dbSNP
rs1179478869 1177 dbSNP
rs755155522 1181 dbSNP
rs13761 1195 dbSNP
rs1257141312 1198 dbSNP
rs142988563 1202 dbSNP
rs1212626999 1207 dbSNP
rs34540202 1207 dbSNP
rs530476234 1220 dbSNP
rs1278098733 1221 dbSNP
rs548851050 1222 dbSNP
rs1240549517 1223 dbSNP
rs1286525453 1235 dbSNP
rs567344454 1238 dbSNP
rs920590362 1243 dbSNP
rs1173597554 1246 dbSNP
rs780733551 1250 dbSNP
rs930687181 1265 dbSNP
rs79984716 1266 dbSNP
rs1467916408 1269 dbSNP
rs377125838 1270 dbSNP
rs547193684 1275 dbSNP
rs1156290786 1278 dbSNP
rs1471991436 1287 dbSNP
rs1402556483 1290 dbSNP
rs1415109140 1306 dbSNP
rs879806015 1307 dbSNP
rs917440508 1319 dbSNP
rs944530756 1321 dbSNP
rs1209821917 1328 dbSNP
rs950167837 1331 dbSNP
rs1044675543 1333 dbSNP
rs1040611154 1337 dbSNP
rs1227803879 1346 dbSNP
rs906073898 1350 dbSNP
rs900213553 1352 dbSNP
rs1447368264 1364 dbSNP
rs1313273284 1368 dbSNP
rs1229951341 1376 dbSNP
rs996319388 1379 dbSNP
rs1376973352 1380 dbSNP
rs1283353557 1382 dbSNP
rs1054245763 1383 dbSNP
rs1318167116 1410 dbSNP
rs1390326367 1410 dbSNP
rs1456188333 1416 dbSNP
rs1368442373 1424 dbSNP
rs1235145677 1426 dbSNP
rs1256804424 1436 dbSNP
rs1038404454 1445 dbSNP
rs897132778 1468 dbSNP
rs994238856 1478 dbSNP
rs1189585187 1480 dbSNP
rs892788169 1483 dbSNP
rs1009934057 1484 dbSNP
rs537783569 1493 dbSNP
rs1260031256 1496 dbSNP
rs1208346000 1498 dbSNP
rs1488964563 1498 dbSNP
rs1029680539 1499 dbSNP
rs1458290307 1499 dbSNP
rs1021188345 1500 dbSNP
rs1319834454 1502 dbSNP
rs1193500406 1510 dbSNP
rs1314323632 1516 dbSNP
rs1251692366 1517 dbSNP
rs954560140 1533 dbSNP
rs35218139 1535 dbSNP
rs1294871092 1537 dbSNP
rs1435276109 1550 dbSNP
rs1367949589 1552 dbSNP
rs902783374 1556 dbSNP
rs1200098043 1571 dbSNP
rs1377819360 1573 dbSNP
rs552251884 1576 dbSNP
rs1388695369 1577 dbSNP
rs1008652863 1586 dbSNP
rs556300669 1586 dbSNP
rs571835134 1592 dbSNP
rs1035606443 1599 dbSNP
rs1401777544 1603 dbSNP
rs1488215821 1612 dbSNP
rs1290864090 1614 dbSNP
rs1465701172 1639 dbSNP
rs959600500 1645 dbSNP
rs964699202 1646 dbSNP
rs979079665 1648 dbSNP
rs1312387214 1660 dbSNP
rs925670543 1675 dbSNP
rs955874635 1678 dbSNP
rs990864216 1685 dbSNP
rs1027721201 1686 dbSNP
rs988572328 1688 dbSNP
rs16955862 1689 dbSNP
rs1301769408 1693 dbSNP
rs776381624 1699 dbSNP
rs1325671587 1701 dbSNP
rs557584725 1703 dbSNP
rs1369291182 1704 dbSNP
rs1280353022 1723 dbSNP
rs980303979 1723 dbSNP
rs1466898406 1725 dbSNP
rs927443900 1743 dbSNP
rs907756084 1746 dbSNP
rs1432608849 1752 dbSNP
rs1039005995 1760 dbSNP
rs944626198 1764 dbSNP
rs569201282 1770 dbSNP
rs536639657 1772 dbSNP
rs921756180 1773 dbSNP
rs1483977473 1778 dbSNP
rs181177882 1800 dbSNP
rs1194960932 1803 dbSNP
rs929952660 1805 dbSNP
rs1051134589 1817 dbSNP
rs1230621777 1823 dbSNP
rs1054192963 1827 dbSNP
rs572977563 1836 dbSNP
rs1229754065 1840 dbSNP
rs528180760 1842 dbSNP
rs1349123583 1844 dbSNP
rs1328813177 1845 dbSNP
rs768519243 1862 dbSNP
rs147446152 1866 dbSNP
rs1000135236 1867 dbSNP
rs1033314257 1870 dbSNP
rs12940636 1871 dbSNP
rs1477859453 1884 dbSNP
rs988436363 1893 dbSNP
rs553454319 1901 dbSNP
rs1181002181 1907 dbSNP
rs1065478 1918 dbSNP
rs1023972567 1923 dbSNP
rs1257990360 1931 dbSNP
rs769763955 1932 dbSNP
rs1035320529 1935 dbSNP
rs895288600 1937 dbSNP
rs1012399873 1938 dbSNP
rs773081198 1941 dbSNP
rs1326467757 1942 dbSNP
rs1027667537 1944 dbSNP
rs952131183 1947 dbSNP
rs763031265 1951 dbSNP
rs1341431002 1955 dbSNP
rs1342850243 1955 dbSNP
rs1232731105 1960 dbSNP
rs983380372 1961 dbSNP
rs1214893231 1967 dbSNP
rs1291554054 1968 dbSNP
rs766451738 1987 dbSNP
rs1455643621 2009 dbSNP
rs1323608187 2010 dbSNP
rs571679777 2013 dbSNP
rs1163965046 2025 dbSNP
rs751741693 2027 dbSNP
rs1473069305 2044 dbSNP
rs1370175004 2046 dbSNP
rs759778858 2048 dbSNP
rs767778351 2053 dbSNP
rs1248190162 2058 dbSNP
rs966108296 2060 dbSNP
rs139983672 2062 dbSNP
rs544980751 2063 dbSNP
rs1488440414 2065 dbSNP
rs1282938360 2073 dbSNP
rs931773359 2077 dbSNP
rs59212690 2080 dbSNP
rs914286373 2081 dbSNP
rs1229091544 2085 dbSNP
rs1410929091 2091 dbSNP
rs1264225789 2094 dbSNP
rs1245649121 2095 dbSNP
rs891119834 2097 dbSNP
rs145422513 2101 dbSNP
rs1433148753 2102 dbSNP
rs1040174971 2118 dbSNP
rs1041523361 2123 dbSNP
rs756505005 2133 dbSNP
rs1407179950 2135 dbSNP
rs75398986 2136 dbSNP
rs1161604276 2140 dbSNP
rs1000402219 2142 dbSNP
rs560993718 2156 dbSNP
rs1057107624 2160 dbSNP
rs1190351314 2162 dbSNP
rs1474205656 2166 dbSNP
rs185985617 2168 dbSNP
rs754318054 2169 dbSNP
rs757938328 2177 dbSNP
rs546677059 2184 dbSNP
rs1004919393 2185 dbSNP
rs1343566671 2186 dbSNP
rs190449092 2195 dbSNP
rs1277203445 2196 dbSNP
rs1024005021 2198 dbSNP
rs1226715017 2199 dbSNP
rs1338930973 2200 dbSNP
rs971030769 2201 dbSNP
rs181431390 2216 dbSNP
rs1329431631 2218 dbSNP
rs746563057 2221 dbSNP
rs551028863 2228 dbSNP
rs997538938 2230 dbSNP
rs1029300987 2237 dbSNP
rs979891781 2242 dbSNP
rs1170223783 2243 dbSNP
rs768390740 2245 dbSNP
rs1408021987 2246 dbSNP
rs1381351491 2248 dbSNP
rs1418302571 2258 dbSNP
rs953276541 2264 dbSNP
rs962920360 2286 dbSNP
rs73314570 2287 dbSNP
rs914400913 2291 dbSNP
rs1254627646 2292 dbSNP
rs967243683 2295 dbSNP
rs977559060 2304 dbSNP
rs150671871 2311 dbSNP
rs368246016 2321 dbSNP
rs576654283 2330 dbSNP
rs1055485435 2333 dbSNP
rs912587248 2336 dbSNP
rs1235390276 2354 dbSNP
rs1343222615 2356 dbSNP
rs1282693533 2357 dbSNP
rs1229144540 2367 dbSNP
rs9892998 2371 dbSNP
rs948297600 2373 dbSNP
rs1309809469 2380 dbSNP
rs534040702 2381 dbSNP
rs1049337736 2382 dbSNP
rs1181998273 2392 dbSNP
rs1249709771 2393 dbSNP
rs1437797649 2395 dbSNP
rs1334633178 2407 dbSNP
rs1415814094 2407 dbSNP
rs373296936 2417 dbSNP
rs1426815841 2420 dbSNP
rs887926038 2423 dbSNP
rs773136663 2424 dbSNP
rs1433880860 2443 dbSNP
rs1470125299 2445 dbSNP
rs1036826468 2448 dbSNP
rs1212734228 2451 dbSNP
rs1460134403 2458 dbSNP
rs76447265 2461 dbSNP
rs79044434 2467 dbSNP
rs1331326408 2470 dbSNP
rs1361185859 2473 dbSNP
rs891619998 2478 dbSNP
rs1372601522 2481 dbSNP
rs1284536322 2505 dbSNP
rs997886062 2508 dbSNP
rs770950543 2510 dbSNP
rs577463774 2511 dbSNP
rs1010179162 2517 dbSNP
rs538818871 2519 dbSNP
rs1390192967 2528 dbSNP
rs1011497465 2533 dbSNP
rs1400605939 2538 dbSNP
rs1415218901 2540 dbSNP
rs1183915562 2542 dbSNP
rs1443199253 2545 dbSNP
rs1242688894 2570 dbSNP
rs1297730064 2572 dbSNP
rs774394258 2574 dbSNP
rs1045652233 2576 dbSNP
rs906883396 2588 dbSNP
rs1310648092 2589 dbSNP
rs1001576093 2595 dbSNP
rs1316245577 2602 dbSNP
rs749062817 2627 dbSNP
rs1370632795 2636 dbSNP
rs1021576837 2645 dbSNP
rs1290549504 2655 dbSNP
rs1217904053 2663 dbSNP
rs1247817856 2664 dbSNP
rs557009000 2665 dbSNP
rs1314191977 2668 dbSNP
rs34087945 2679 dbSNP
rs397857149 2679 dbSNP
rs201544927 2680 dbSNP
rs995259858 2688 dbSNP
rs1286590399 2691 dbSNP
rs759655974 2697 dbSNP
rs1256820919 2699 dbSNP
rs1350933580 2704 dbSNP
rs878859818 2706 dbSNP
rs1456082987 2720 dbSNP
rs1423066309 2726 dbSNP
rs1384990121 2728 dbSNP
rs767725390 2731 dbSNP
rs1238714886 2732 dbSNP
rs1453569030 2739 dbSNP
rs1488852361 2743 dbSNP
rs775636226 2745 dbSNP
rs1247155436 2758 dbSNP
rs987031986 2764 dbSNP
rs912779414 2770 dbSNP
rs1189308839 2771 dbSNP
rs1427500404 2773 dbSNP
rs761046695 2774 dbSNP
rs959821234 2776 dbSNP
rs1308847301 2779 dbSNP
rs1170037578 2797 dbSNP
rs1381092870 2800 dbSNP
rs1367708060 2805 dbSNP
rs1304487382 2806 dbSNP
rs1403633836 2809 dbSNP
rs991679795 2817 dbSNP
rs975858325 2818 dbSNP
rs1432039242 2820 dbSNP
rs915573910 2821 dbSNP
rs575475132 2823 dbSNP
rs1049286453 2827 dbSNP
rs1434043143 2828 dbSNP
rs1427350166 2831 dbSNP
rs1197418285 2832 dbSNP
rs1467254161 2835 dbSNP
rs936778796 2836 dbSNP
rs1205563322 2841 dbSNP
rs909480447 2847 dbSNP
rs74427487 2848 dbSNP
rs1226218343 2850 dbSNP
rs913086620 2854 dbSNP
rs1284609733 2855 dbSNP
rs1221204977 2868 dbSNP
rs1036534295 2879 dbSNP
rs901890256 2880 dbSNP
rs1345380113 2884 dbSNP
rs560876968 2886 dbSNP
rs1393444484 2888 dbSNP
rs1045689024 2890 dbSNP
rs1277019639 2891 dbSNP
rs572829697 2895 dbSNP
rs933413578 2896 dbSNP
rs754319130 2897 dbSNP
rs1001458462 2901 dbSNP
rs1480170669 2904 dbSNP
rs1277190725 2905 dbSNP
rs780049815 2905 dbSNP
rs1055904529 2908 dbSNP
rs889103328 2909 dbSNP
rs1011615690 2911 dbSNP
rs1420864545 2918 dbSNP
rs1021525770 2923 dbSNP
rs1483359828 2940 dbSNP
rs1264640354 2942 dbSNP
rs1201186574 2955 dbSNP
rs995689306 2956 dbSNP
rs1288496385 2958 dbSNP
rs757813622 2964 dbSNP
rs1451014778 2968 dbSNP
rs768752179 2972 dbSNP
rs951562411 2977 dbSNP
rs1397001097 2990 dbSNP
rs1385217399 2995 dbSNP
rs1334976955 2996 dbSNP
rs903121814 3008 dbSNP
rs1469300883 3009 dbSNP
rs999057440 3009 dbSNP
rs748197783 3012 dbSNP
rs1008311327 3016 dbSNP
rs1455251847 3017 dbSNP
rs541487769 3019 dbSNP
rs1248199882 3021 dbSNP
rs1424208343 3023 dbSNP
rs762165339 3024 dbSNP
rs879348965 3027 dbSNP
rs1244523243 3034 dbSNP
rs1181358662 3039 dbSNP
rs376621661 3042 dbSNP
rs1206427239 3053 dbSNP
rs1186082273 3060 dbSNP
rs960182778 3068 dbSNP
rs1260690115 3073 dbSNP
rs1245904776 3074 dbSNP
rs991232942 3078 dbSNP
rs1385456426 3080 dbSNP
rs1478837227 3083 dbSNP
rs1422189028 3085 dbSNP
rs547407783 3090 dbSNP
rs1313445861 3097 dbSNP
rs1452181463 3099 dbSNP
rs1171539178 3101 dbSNP
rs78875329 3102 dbSNP
rs1380627589 3117 dbSNP
rs1382642712 3122 dbSNP
rs983769794 3128 dbSNP
rs909428098 3140 dbSNP
rs565590845 3145 dbSNP
rs551130232 3155 dbSNP
rs1161487796 3156 dbSNP
rs1350768988 3157 dbSNP
rs1430464216 3160 dbSNP
rs1297193007 3187 dbSNP
rs972761134 3191 dbSNP
rs958038374 3192 dbSNP
rs923462674 3193 dbSNP
rs988235201 3202 dbSNP
rs562909522 3207 dbSNP
rs913956229 3216 dbSNP
rs1338039884 3217 dbSNP
rs933508335 3231 dbSNP
rs530434548 3237 dbSNP
rs981313691 3247 dbSNP
rs1245759342 3272 dbSNP
rs1050487577 3274 dbSNP
rs889219672 3276 dbSNP
rs371092825 3277 dbSNP
rs548435935 3281 dbSNP
rs928481923 3284 dbSNP
rs566532919 3294 dbSNP
rs1226479630 3296 dbSNP
rs1291943497 3297 dbSNP
rs937285633 3309 dbSNP
rs1423808105 3317 dbSNP
rs1055698793 3321 dbSNP
rs751107428 3332 dbSNP
rs947348866 3365 dbSNP
rs1043082836 3366 dbSNP
rs898174490 3376 dbSNP
rs1371992059 3387 dbSNP
rs930951997 3393 dbSNP
rs1046800517 3395 dbSNP
rs886898427 3397 dbSNP
rs376107423 3398 dbSNP
rs1215703609 3404 dbSNP
rs903066107 3409 dbSNP
rs1261280191 3419 dbSNP
rs998778492 3422 dbSNP
rs1489418919 3434 dbSNP
rs1194293070 3436 dbSNP
rs77718159 3441 dbSNP
rs57778237 3449 dbSNP
rs1225454905 3450 dbSNP
rs1347283142 3454 dbSNP
rs145864569 3464 dbSNP
rs557141778 3465 dbSNP
rs1032564335 3468 dbSNP
rs1330721359 3482 dbSNP
rs1407825204 3484 dbSNP
rs1400474951 3489 dbSNP
rs1157277379 3509 dbSNP
rs958285701 3518 dbSNP
rs780838322 3519 dbSNP
rs575306008 3521 dbSNP
rs1298455806 3522 dbSNP
rs988102808 3536 dbSNP
rs536550795 3540 dbSNP
rs1199343282 3542 dbSNP
rs1470830951 3545 dbSNP
rs747759761 3556 dbSNP
rs76376880 3565 dbSNP
rs982181308 3568 dbSNP
rs1015205448 3578 dbSNP
rs1205571467 3587 dbSNP
rs1285870100 3604 dbSNP
rs1321529690 3605 dbSNP
rs1262655004 3606 dbSNP
rs1222822001 3617 dbSNP
rs1374017245 3618 dbSNP
rs928483042 3623 dbSNP
rs1439777738 3626 dbSNP
rs548585239 3630 dbSNP
rs991829799 3631 dbSNP
rs755899222 3635 dbSNP
rs919821335 3648 dbSNP
rs1283574325 3650 dbSNP
rs923547467 3652 dbSNP
rs1355617895 3656 dbSNP
rs933477547 3661 dbSNP
rs931227455 3662 dbSNP
rs986319295 3666 dbSNP
rs1469954787 3668 dbSNP
rs1278188450 3673 dbSNP
rs910601839 3677 dbSNP
rs886762563 3678 dbSNP
rs1460202116 3690 dbSNP
rs1189773690 3693 dbSNP
rs1040773005 3703 dbSNP
rs1317389635 3705 dbSNP
rs540216004 3719 dbSNP
rs1286292203 3723 dbSNP
rs947462740 3725 dbSNP
rs1043201158 3735 dbSNP
rs1349705915 3745 dbSNP
rs1315538906 3747 dbSNP
rs569977981 3752 dbSNP
rs558711951 3754 dbSNP
rs900011091 3755 dbSNP
rs576890447 3756 dbSNP
rs1439663143 3760 dbSNP
rs1347394825 3770 dbSNP
rs1033010591 3775 dbSNP
rs777452300 3781 dbSNP
rs1386247948 3782 dbSNP
rs1177347260 3799 dbSNP
rs1442982918 3804 dbSNP
rs1187138762 3808 dbSNP
rs1057017818 3813 dbSNP
rs895738869 3814 dbSNP
rs1487959311 3815 dbSNP
rs191803316 3821 dbSNP
rs774299085 3821 dbSNP
rs531630629 3823 dbSNP
rs1012664071 3828 dbSNP
rs1311577682 3836 dbSNP
rs113722689 3842 dbSNP
rs970700119 3843 dbSNP
rs770825762 3845 dbSNP
rs1430609073 3846 dbSNP
rs1366784244 3856 dbSNP
rs549848124 3858 dbSNP
rs1412243623 3859 dbSNP
rs774341397 3863 dbSNP
rs961059929 3864 dbSNP
rs1417455753 3865 dbSNP
rs1186044640 3867 dbSNP
rs1477427197 3869 dbSNP
rs866160442 3871 dbSNP
rs563110026 3875 dbSNP
rs1269558753 3879 dbSNP
rs958794798 3888 dbSNP
rs1489802789 3893 dbSNP
rs1264703646 3895 dbSNP
rs1204775397 3902 dbSNP
rs530190459 3905 dbSNP
rs1292797854 3909 dbSNP
rs1480808684 3912 dbSNP
rs375620371 3912 dbSNP
rs72476932 3912 dbSNP
rs748752974 3912 dbSNP
rs879033900 3912 dbSNP
rs982644648 3912 dbSNP
rs1307015673 3913 dbSNP
rs1177624108 3914 dbSNP
rs1030561054 3915 dbSNP
rs1378745063 3915 dbSNP
rs1240684046 3916 dbSNP
rs1197383943 3921 dbSNP
rs1323637356 3923 dbSNP
rs1012197482 3927 dbSNP
rs943675280 3928 dbSNP
rs1343195291 3929 dbSNP
rs142611274 3930 dbSNP
rs199549847 3930 dbSNP
rs1377027062 3932 dbSNP
rs78268532 3932 dbSNP
rs542165360 3933 dbSNP
rs1247908593 3934 dbSNP
rs1491441211 3936 dbSNP
rs920981732 3936 dbSNP
rs1261829632 3937 dbSNP
rs371358640 3937 dbSNP
rs910717907 3937 dbSNP
rs932392052 3937 dbSNP
rs968897171 3939 dbSNP
rs1315494361 3948 dbSNP
rs1279373398 3952 dbSNP
rs1457386975 3953 dbSNP
rs893968424 3955 dbSNP
rs978826948 3961 dbSNP
rs560406319 3965 dbSNP
rs1334733241 3968 dbSNP
rs768068505 3974 dbSNP
rs1009849498 3980 dbSNP
rs1197237499 3980 dbSNP
rs1159085817 3996 dbSNP
rs1240645008 3996 dbSNP
rs182889401 4000 dbSNP
rs1378245182 4001 dbSNP
rs1157866765 4013 dbSNP
rs552132666 4014 dbSNP
rs1386729872 4018 dbSNP
rs1181142284 4022 dbSNP
rs1434296397 4026 dbSNP
rs1198660621 4035 dbSNP
rs1003513437 4037 dbSNP
rs1376687049 4041 dbSNP
rs1034183228 4044 dbSNP
rs371674031 4047 dbSNP
rs1057442293 4048 dbSNP
rs879467524 4049 dbSNP
rs1234340133 4054 dbSNP
rs1313189215 4059 dbSNP
rs185923097 4063 dbSNP
rs948630862 4069 dbSNP
rs1320444360 4070 dbSNP
rs995316450 4074 dbSNP
rs190435062 4080 dbSNP
rs952522507 4084 dbSNP
rs1425100634 4087 dbSNP
rs1366991490 4096 dbSNP
rs982674095 4108 dbSNP
rs1402443751 4113 dbSNP
rs1447215113 4121 dbSNP
rs1373124961 4124 dbSNP
rs1194765177 4129 dbSNP
rs1263147149 4135 dbSNP
rs908432219 4135 dbSNP
rs1490945826 4137 dbSNP
rs1290111390 4139 dbSNP
rs1300377811 4146 dbSNP
rs1271979543 4147 dbSNP
rs1329165229 4147 dbSNP
rs1340369223 4147 dbSNP
rs965014844 4149 dbSNP
rs976485949 4153 dbSNP
rs1044328941 4166 dbSNP
rs1277505181 4188 dbSNP
rs1405545057 4192 dbSNP
rs920922539 4193 dbSNP
rs1275677072 4198 dbSNP
rs1317370917 4200 dbSNP
rs549960587 4202 dbSNP
rs182616627 4206 dbSNP
rs569080534 4211 dbSNP
rs1260528998 4219 dbSNP
rs1005371605 4228 dbSNP
rs536439778 4233 dbSNP
rs1463613679 4237 dbSNP
rs1053929816 4240 dbSNP
rs554936647 4241 dbSNP
rs1453702202 4244 dbSNP
rs1481742117 4245 dbSNP
rs1245311786 4248 dbSNP
rs1198655839 4268 dbSNP
rs1438560017 4272 dbSNP
rs1275419376 4273 dbSNP
rs896916893 4280 dbSNP
rs1317361806 4295 dbSNP
rs1263908171 4302 dbSNP
rs566750360 4309 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000226067.5 | 3UTR | UUGGCCAUUAACAAUGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells 0.534 4.3e-3 0.272 1.0e-1 23 Click to see details
GSE38226 Liver fibrosis -0.423 2.8e-2 0.130 2.9e-1 21 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.264 1.0e-1 -0.249 1.2e-1 25 Click to see details
GSE28260 Renal cortex and medulla -0.209 2.5e-1 -0.110 3.6e-1 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.131 2.7e-1 0.057 4.0e-1 24 Click to see details
GSE32688 Pancreatic cancer -0.075 3.4e-1 -0.010 4.8e-1 32 Click to see details
GSE28544 Breast cancer -0.005 4.9e-1 -0.575 1.6e-3 24 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
THCA 0.339 0 0.316 0.01 59 Click to see details
PRAD -0.292 0.02 -0.177 0.11 50 Click to see details
BLCA -0.48 0.02 -0.467 0.03 18 Click to see details
BRCA -0.21 0.03 -0.194 0.04 84 Click to see details
STAD -0.315 0.04 -0.374 0.02 32 Click to see details
PAAD -0.881 0.06 -0.800 0.1 4 Click to see details
KICH 0.273 0.09 0.420 0.02 25 Click to see details
LUAD -0.317 0.16 -0.280 0.19 12 Click to see details
KIRC -0.111 0.18 -0.232 0.03 68 Click to see details
LUSC 0.15 0.18 0.172 0.15 38 Click to see details
KIRP 0.122 0.25 0.174 0.17 32 Click to see details
LIHC -0.073 0.31 -0.043 0.38 49 Click to see details
ESCA 0.151 0.33 0.064 0.43 11 Click to see details
PCPG 0.326 0.39 0.500 0.33 3 Click to see details
UCEC 0.046 0.43 -0.074 0.38 19 Click to see details
CESC -0.149 0.45 0.500 0.33 3 Click to see details
HNSC -0.014 0.46 -0.073 0.32 42 Click to see details
CHOL 0.006 0.49 -0.033 0.47 9 Click to see details
COAD 0.005 0.5 -0.071 0.43 8 Click to see details
COAD 0.005 0.5 -0.071 0.43 8 Click to see details
COAD 0.005 0.5 -0.071 0.43 8 Click to see details
88 hsa-miR-664a-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT035824 HIAT1 major facilitator superfamily domain containing 14A 1 1
MIRT035826 FUS FUS RNA binding protein 1 1
MIRT069432 SIVA1 SIVA1 apoptosis inducing factor 2 2
MIRT071494 CALM1 calmodulin 1 2 2
MIRT100410 HSPA1B heat shock protein family A (Hsp70) member 1B 2 2
MIRT143469 CHD9 chromodomain helicase DNA binding protein 9 2 2
MIRT191113 ARF6 ADP ribosylation factor 6 2 2
MIRT235584 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 2 8
MIRT339131 ARID1A AT-rich interaction domain 1A 2 2
MIRT437450 MAT1A methionine adenosyltransferase 1A 1 1
MIRT442234 BTD biotinidase 2 2
MIRT443321 SLC35G1 solute carrier family 35 member G1 2 2
MIRT443769 HLF HLF, PAR bZIP transcription factor 2 2
MIRT444352 KIAA1211 KIAA1211 2 2
MIRT456348 OLIG3 oligodendrocyte transcription factor 3 2 8
MIRT458866 CD55 CD55 molecule (Cromer blood group) 2 2
MIRT466169 TMED5 transmembrane p24 trafficking protein 5 2 2
MIRT470445 PPP1R15B protein phosphatase 1 regulatory subunit 15B 2 6
MIRT471524 PCGF3 polycomb group ring finger 3 2 6
MIRT477744 EDN1 endothelin 1 2 2
MIRT482885 CACNA2D3 calcium voltage-gated channel auxiliary subunit alpha2delta 3 2 2
MIRT496336 PTPRT protein tyrosine phosphatase, receptor type T 2 2
MIRT497703 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 2 2
MIRT499068 CTBP1 C-terminal binding protein 1 2 4
MIRT500296 ZNF667 zinc finger protein 667 2 8
MIRT500506 ZBTB34 zinc finger and BTB domain containing 34 2 8
MIRT501964 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT505457 SUB1 SUB1 homolog, transcriptional regulator 2 4
MIRT505955 RAN RAN, member RAS oncogene family 2 6
MIRT507512 DYNLL2 dynein light chain LC8-type 2 2 4
MIRT512953 MKI67 marker of proliferation Ki-67 2 2
MIRT520450 TSPAN2 tetraspanin 2 2 6
MIRT525997 MAGEL2 MAGE family member L2 2 2
MIRT526424 ZNF695 zinc finger protein 695 2 2
MIRT527364 KRTAP13-2 keratin associated protein 13-2 2 2
MIRT529612 H1F0 H1 histone family member 0 2 2
MIRT529811 TMLHE trimethyllysine hydroxylase, epsilon 2 2
MIRT530971 EXO5 exonuclease 5 2 4
MIRT531294 WNT7A Wnt family member 7A 2 2
MIRT531870 POF1B premature ovarian failure, 1B 2 2
MIRT532116 G6PC glucose-6-phosphatase catalytic subunit 2 2
MIRT533534 TPR translocated promoter region, nuclear basket protein 2 2
MIRT545934 ZBTB44 zinc finger and BTB domain containing 44 2 4
MIRT546649 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT548063 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT548288 FAM3C family with sequence similarity 3 member C 2 4
MIRT551018 SPPL3 signal peptide peptidase like 3 2 2
MIRT551139 ZNF678 zinc finger protein 678 2 2
MIRT552398 ZNF487P zinc finger protein 487 1 1
MIRT555640 PHIP pleckstrin homology domain interacting protein 2 4
MIRT556267 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT558864 CD2AP CD2 associated protein 2 2
MIRT559239 BEND4 BEN domain containing 4 2 2
MIRT559438 ARSJ arylsulfatase family member J 2 2
MIRT559793 ZNF415 zinc finger protein 415 2 2
MIRT562572 CBX6 chromobox 6 2 2
MIRT562741 ZNF83 zinc finger protein 83 2 2
MIRT564737 ZNF23 zinc finger protein 23 2 2
MIRT565174 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT566301 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A 2 2
MIRT571656 SERBP1 SERPINE1 mRNA binding protein 1 2 2
MIRT610720 NAV2 neuron navigator 2 2 2
MIRT611486 ADCYAP1R1 ADCYAP receptor type I 2 4
MIRT617118 KANK2 KN motif and ankyrin repeat domains 2 2 2
MIRT617836 SIGLEC10 sialic acid binding Ig like lectin 10 2 2
MIRT636145 VLDLR very low density lipoprotein receptor 2 2
MIRT638060 YAE1D1 Yae1 domain containing 1 2 4
MIRT640159 CDK13 cyclin dependent kinase 13 2 2
MIRT644257 WEE2 WEE1 homolog 2 2 2
MIRT646838 TLDC1 TBC/LysM-associated domain containing 1 2 2
MIRT653074 ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 2 2
MIRT657671 GPR26 G protein-coupled receptor 26 2 2
MIRT660601 AP3M2 adaptor related protein complex 3 mu 2 subunit 2 2
MIRT668908 CREB1 cAMP responsive element binding protein 1 2 2
MIRT672685 GTF2H5 general transcription factor IIH subunit 5 2 2
MIRT680977 DCAF17 DDB1 and CUL4 associated factor 17 2 2
MIRT682271 RS1 retinoschisin 1 2 2
MIRT702058 RNMT RNA guanine-7 methyltransferase 2 2
MIRT707786 UNK unkempt family zinc finger 2 2
MIRT709238 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT710119 MED23 mediator complex subunit 23 2 2
MIRT710675 ADAP2 ArfGAP with dual PH domains 2 2 2
MIRT712884 NIPBL NIPBL, cohesin loading factor 2 2
MIRT719015 HPGD 15-hydroxyprostaglandin dehydrogenase 2 2
MIRT723323 COLEC10 collectin subfamily member 10 2 2
MIRT724947 TXNL1 thioredoxin like 1 2 2
MIRT725535 EN2 engrailed homeobox 2 2 2
MIRT734156 FHL1 four and a half LIM domains 1 3 0
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-664a Plx-4720 24180719 NSC757438 resistant High Thyroid Cancer cell line (8505c, BCPAP)
hsa-mir-664a Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-664a Fluorouracil 3385 NSC19893 approved resistant cell line (OE19)
hsa-miR-664a-3p Oxaliplatin 6857599 NSC266046 approved sensitive High Colorectal Cancer cell line (HT-29)
hsa-miR-664a-3p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (RKO)
hsa-miR-664a-3p Sorafenib 216239 NSC747971 approved resistant High Hepatocellular Carcinoma cell line (Huh-7)
hsa-miR-664a-3p Cisplatin 5460033 NSC119875 approved resistant High Gastric Cancer cell line (SGC7901)
hsa-miR-664a-3p Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-664a-3p Fulvestrant 17756771 NSC719276 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-664a-3p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375)
hsa-miR-664a-3p Fluorouracil 3385 NSC19893 approved resistant High Colorectal Cancer cell line (HCT-116)
hsa-miR-664a-3p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-664a-3p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-664a-3p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-664a-3p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-664a-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM17)
hsa-miR-664a-3p Vemurafenib 42611257 NSC761431 approved resistant cell line (LM11)
hsa-miR-664a-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM36)
hsa-miR-664a-3p Tamoxifen 2733525 NSC180973 approved resistant cell line (LCC2)
hsa-miR-664a-3p Fluorouracil 3385 NSC19893 approved resistant cell line (HCT15)
hsa-miR-664a-3p 4-Hydroxytamoxifen+Tamoxifen sensitive cell line (LY2)
hsa-miR-664a-3p Ethanol+Tamoxifen sensitive cell line (LY2)
hsa-miR-664a-3p Gemcitabine 60750 NSC613327 approved resistant cell line (MDA-231)
hsa-miR-664a-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-664a-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-664a-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-664a-3p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-664a-3p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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