miRTarBase - #MIRT443776


—
pre-miRNA Information
pre-miRNA hsa-mir-3123   
Genomic Coordinates chr1: 241132272 - 241132346
Description Homo sapiens miR-3123 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3123
Sequence 49| CAGAGAAUUGUUUAAUC |65
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 4 1 + 241132323 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1453759221 1 dbSNP
rs968575171 5 dbSNP
rs979407933 9 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol STS   
Synonyms ARSC, ARSC1, ASC, ES, SSDD, XLI
Description steroid sulfatase
Transcript NM_000351   
Expression
Putative miRNA Targets on STS
3'UTR of STS
(miRNA target sites are highlighted)		 
>STS|NM_000351|3'UTR
   1 CAGCGCCTGGGGACCAGACAGACGCATGTGGCAAAGCTCACCATCTTCACTACAAACACGCCTGAGAGTGGCACTGGGGA
  81 AACATAACTCCATCTACACCTTGGATTTGGACTGATTCTCCATTTTATCACCTGAAGGCTTGGGCCAGAGCTCAACAGCT
 161 ACTCAACTGGAGGGGTGAGGGGGATAAGGTCTGTAGTATACAGACAGGAAGATGGTAGGTTTATGCCTTCTGTGGCCAGA
 241 GTCTTGGACTCATGGAAATAGAATGAATAGAGGGGCATTCACAAGGCACACCAGTGCAAGCAGATGACAAAAAGGTGCAG
 321 AAGGCAATCTTAAAACAGAAAGGTGCAGGAGGTACCTTAACTCACCCCTCAGCAAATACCTATGTCAACAGTATAAGTTA
 401 CCATTTACTCTATAATCTGCAGTGATGCAATAACCAGCATAATAAAAAGGCAATCACATAAAAAAGAGTTTAGTCGTCTA
 481 AACATAAGTAACTTTAAGGTGAATGAAAGATCTTCTTTAGGAATAATAGATGATGGTAAGTTCCACTTTGGTTATTGGAA
 561 GGCAAGTCATTATTACTGGTATTAGTTAAAACACATATCAAATGCTTGCTCTTCATCATATATATAGTTATGCATACATA
 641 CACACACACACATACAGTATATTCTTTCCTCAAAAGGGTTAAGATGTCTAAAATAGGGACCTAGAAGCTTAACACTATTT
 721 AAGTAAATACAGTAGAAGCTCACAAATAGATTTCTTTGCACAATGATTTTTTGCAAAATTTTACAGTAATAATAATCCCA
 801 AGGCAAATCTCTCCTGAACTGCTTTCCATTCCATAATTTGTAGTATAATTCTTGGATTCCACTGTTTTCTTTGGGGAATG
 881 GAAGTTCTGAATTAAAAGCCCACTGTGGAGATGCTGTGGTTCATGGAATCTCTTCCAGTGTAATTCAGAATCATTGGCCT
 961 AGAAAGTCTCTGATATTTGGAGGGGAACAAAAATCACTCACAAGCAATCCATGATCTATACACATAAGCATAATTTCCTT
1041 TAGTTCTAGTTAGTCATCAGAGAACAGTCATGTATGCAAGTTTTGTGACTGAGAAATTTCTGTGCTTCCAATCCACAATG
1121 AGATGCATGATTTTGTTTTCATCCCATTTCCCCCAAGCCCCTGTAAATCAGGGAAAATGCGCAACTGATCGCCTAGGAGA
1201 GGGCCTCGTAGTGGCACAGCTGGAGATAGTTTCAAAGTCTAAACCACCAGCCCATCCTGAGGAAAGCCTCCTATGGAATG
1281 TAAAGTGCAATCATTTCTTCAGATATAAGACTTTCCCCAACAATGTGATTGGATTCCTTTATGGCAAAATCGAGAGAAGC
1361 TGCCATCCACCTGCTTATGCATTTATCTCTTTTGTGGACTTGTCTGACCACCTTCTATTTGCCCAGAGTTTGCTCAATTC
1441 CAAGACAGTGCCCATGAATGGGACACCTGTAATGTAACCCACACAGCGGTTTGCAGAGAATGTTAGCCATGACTTGGGCT
1521 TTCTGAAAGTTGGCTATAATTTCTCTATCCCTACCCACAACCCTGGGAAGTTGGAGCAAGAGGGGCATACTATTGGGCTG
1601 GGAGGATTTGACAGCATTTCCCCAGTTGCCCTTTAAGTTCTTCTATTTCAAACGTTAATTTTGCTTCTCTTTCTAAAAAA
1681 AAAAAAAAAAAAGAAAGAGAAGAAAGAAGTGATTCCTACCCCCTACCTCCAGAGTTGTTGAAAGCTGAAAAGCATACAAG
1761 ATTCTTCCTTTTAACTTGGATTTCTCGTTCCAGAAATTGTGGGATAATCTGTATTCTTGCTTTAGAAAACATTCTTAGAG
1841 AGGGTACTAGCTTACTGATGATGTGTTAGGATTGCTACTGATGCTGTCATGTGGAAACTATTTAAAGGCACTATTATAAA
1921 TTTATCCTATAAGATGACAATGTTTACTCAAAGTCTAACATATTCAATGCAAGTAAGACTTTCTGAAAACACTTGATGAT
2001 GTGGAAATGCTGCAGGATTAAATAACTTGAAGAGCCTTTATAGATTATATGAATGCCTATTTGTGTCTAGAACCAGTTAT
2081 TTAACCTGTAAAATGTCAATAGCAAATGAAGGATGAAGTATATCTCTAGATGCAAATACATTGAGTTTAAAAGTGCCTCA
2161 AAATAATTGAGATCACATTTCAGGACATTTGGAAATCAGGTCGATTTGTGGTAACTGTAGTCATCTTAAATTTCAAACCA
2241 TTTACCATCTGAAAGTTTTGATTTGAATGTAAAACAGGAAATTGGAATTCCTTTGTCCAGGAGAAACCTCACAAACCTTC
2321 TTTAAGGCATAGTTTTGTTGTTTGTTTGCTTGTTTGTTGCAGGCTGTAAGGCATGGCTGCTTGTTTACAAAGCATCTCAT
2401 TCATATTACCTGTGGAGTTGCATATCCAAACCTTAGTGAGTTTTGAAGCTTTAAGCAAATTCTTTTAAAAAATTCTTGTA
2481 TTTCTAGCATTACTAGATATTAAAAGTTAAGCAAATAGATTAATGACGTATACATAGGCATCATTTCACAAGGTCAGTAA
2561 TGCTGCAGGAAAAGCAAAATTGCAATCTACGTATCTATGGTACTAAGGAAGTCCTGTTTTTCAAAAATGGAAGCCCACTT
2641 CTCAGATTTTTCTGAAGGGCATACAATGAAAAGTGAAGGGGAAACACACACACACAAAAAAACAAGTATTTGGCTTGTCA
2721 CAGGAATCTGATTGCATTAAGTGAAAGGATTATTTAGAATATGTTAATGCAAAGCTAAAATAAAATTTTCCTTGGCAATT
2801 AAAAATGCTGTGCGCTAATACCCTGCTTTCTATCGTGACTCAATTCAACAATGTGGGGAATGTTTACTACATTTCCAACT
2881 TGATGTCAAGCAATGGGGAATACAAGTTCCAGTTCTGCAAAGATTCGTCAACTTTCTTAGCTCAAGAGAGAGGCTGAGAA
2961 ATGCAGAGAAGAATAAGACATAAAATAGCTCCGACCTCCATGATCCGAGAGTGGGAAAAGGCCCGATTATTACCCATAAG
3041 GCACACTCTCTAAGGCCTTTTAAGGGGCCTACAAAAATGTTTTATTTTATAATCAGAAGAAAAGGAAATGAACATTGGGG
3121 ATTGAAAATCATATTGGTATTTGCACCAACATAGTCATAAAATAGTATGTTAATATGTTTTTACTTTATATATTTATATA
3201 TTAAAATATATTTAATATGTTTTGCCTTTGTGGCCCATGAAAGTCTTACTGGGCCCTGGGGAAGGTATCCTACCCTGGTG
3281 AAGCAGCTGCTTTGCTCTACAAATACCTGGGGCAGAAATTTGATTTGAAAAGTATTATTCTCTCTTCTCTTTGTTTCAAC
3361 TGGATTCCTTTGGAAAACCAAACTAGTATCAGAACAAACCCCGAAACAGTAAGAAATTGGAGTGAGAAGGGCATGGTATT
3441 GGGACTAGGATCGGCTCTCATTCGATCGAGCTATTCTCTTAAAATGACAAAAAGTGTCCATAAAGAGGCTGCTGGAGAGT
3521 GCGTGGCCATAGGGAGCCGACATGCCCGGGAGGAAAGGTGTTGATTACATGGATACTTCTAAAAGCTAAAGCCTTGTTGC
3601 CTTCTCTTTAATGCCTAGAGAATGGGATGTGTGATGCAAATGCTCAAAACCTCTTAAATCATAGCTGTCTGACCTCTACG
3681 GACCTCACATCCATCTGAGGCTTCATGGACAAAGATTCTCCACTTGGCCAAACTTTAGCCAAGCTCCTCAACCTTCTCCC
3761 AGGCCCAATCTGGGCACTTCCTTGTAAAATCTAGTTTTGGCAAGAAGTCTATTAGGTCAGTTTAGCAAGAACACCTAACC
3841 CCCCCATATCTGTTCAACCTCAGTATCTGATCAGGCTCCTCAGCCTCCACCATCCCCCAGGTGATGTCTGGTCAACTGGC
3921 CTGCCTTCAGCTAGAATCCTGTTAGGTCGGTTTAGATGAATGCTCCCTGATATTTCCTCTTGGTAATCTTCCATCCACTG
4001 CCCCTGACCCTGTTCCCTGTCTATAAATCCCCAGTTTTCCATGGTGTATTCAGAGCTGAGTCCAGTCTCTCTCCCCTACT
4081 ACAAGTCCCCATTGCTGTGGTCCCCGTACCTGTCATGATGGTCCTAAATAAAGTCTTACTGTGCTTTAATAGGTAGCATT
4161 GAAAAATTTTTTTCTTTGACATCATTCATGACAACATGAAACCTATTGGGACAGCATGACTGTGCAGGGTCTTTAGAGCT
4241 CAGCTTTCTGAGGCCCTGAGCATTCTTGGTTTTCCGACATCGTGAACCTGTTCTGTGTTGCAAGATATCACTCAAGCCAG
4321 TGTTGCTTAATACCATCTCTTTGTGTAATAGATCTGAATAAAGTAATTGTAATACACCAATAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuAAUUUGUUAAGAGAc 5'
            | :|:| ||||||| 
Target 5' gaTCGAGCTATTCTCTt 3'
 3464 - 3480 151.00 -9.00
2 
miRNA  3' cuAAUUUG-UUAAGAGAc 5'
            ||||:| ||||||:| 
Target 5' ctTTAAGCAAATTCTTTt 3'
 2449 - 2466 147.00 -7.10
3 
miRNA  3' cuaaUUUGU--UAAGAGAc 5'
              ||::|  ||||||| 
Target 5' tgaaAAGTATTATTCTCTc 3'
 3326 - 3344 147.00 -5.30
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs769540715 6 dbSNP
rs920572237 13 dbSNP
rs1223118413 15 dbSNP
rs931236130 18 dbSNP
rs765033002 20 dbSNP
rs1206756822 21 dbSNP
rs199921654 22 dbSNP
rs758245690 24 dbSNP
rs779664349 25 dbSNP
rs746978993 27 dbSNP
rs772902556 28 dbSNP
rs1387453594 43 dbSNP
rs1401645772 49 dbSNP
rs754804070 53 dbSNP
rs1240157905 58 dbSNP
rs755514009 60 dbSNP
rs112438421 62 dbSNP
rs762522845 69 dbSNP
rs1313854439 75 dbSNP
rs1395999252 85 dbSNP
rs1040866717 92 dbSNP
rs1244364766 93 dbSNP
rs891554474 95 dbSNP
rs369061432 111 dbSNP
rs1042759582 115 dbSNP
rs774024994 123 dbSNP
rs1181839407 128 dbSNP
rs1426151088 132 dbSNP
rs759169119 142 dbSNP
rs1163774466 164 dbSNP
rs1421795504 170 dbSNP
rs192573858 183 dbSNP
rs1182726928 194 dbSNP
rs1483459900 200 dbSNP
rs942418823 205 dbSNP
rs1251149614 206 dbSNP
rs779583044 208 dbSNP
rs1161603393 215 dbSNP
rs1266219214 225 dbSNP
rs1361840138 238 dbSNP
rs1244544413 253 dbSNP
rs1320229585 260 dbSNP
rs372957567 265 dbSNP
rs1309795449 275 dbSNP
rs1229544796 276 dbSNP
rs1349404481 277 dbSNP
rs1305618065 286 dbSNP
rs1034648326 290 dbSNP
rs960559135 306 dbSNP
rs140587592 314 dbSNP
rs1292534383 344 dbSNP
rs1456201395 351 dbSNP
rs1015004398 353 dbSNP
rs962118140 368 dbSNP
rs1472208925 383 dbSNP
rs1411377584 391 dbSNP
rs1180144973 394 dbSNP
rs1434930563 403 dbSNP
rs762225334 421 dbSNP
rs1209397023 427 dbSNP
rs778062471 428 dbSNP
rs1335535365 430 dbSNP
rs145644033 431 dbSNP
rs1329049187 435 dbSNP
rs953427507 451 dbSNP
rs750593186 460 dbSNP
rs986530979 475 dbSNP
rs911149880 476 dbSNP
rs758648683 477 dbSNP
rs1386923891 485 dbSNP
rs1228169470 500 dbSNP
rs1320939958 504 dbSNP
rs1456472456 506 dbSNP
rs771108071 510 dbSNP
rs1386388303 513 dbSNP
rs913042801 522 dbSNP
rs1439907107 525 dbSNP
rs1467650566 531 dbSNP
rs182597098 532 dbSNP
rs1042853449 534 dbSNP
rs751615355 535 dbSNP
rs1431633679 577 dbSNP
rs1255454169 578 dbSNP
rs1250337236 579 dbSNP
rs1189651139 582 dbSNP
rs1481026773 588 dbSNP
rs1464693549 595 dbSNP
rs1179168902 602 dbSNP
rs1266799702 608 dbSNP
rs1202698671 610 dbSNP
rs187791133 614 dbSNP
rs1254877986 617 dbSNP
rs1418234091 618 dbSNP
rs781181925 621 dbSNP
rs866218278 623 dbSNP
rs904270785 626 dbSNP
rs1362680362 640 dbSNP
rs748089360 640 dbSNP
rs1338696152 643 dbSNP
rs1414960059 644 dbSNP
rs1403064588 647 dbSNP
rs1172040064 648 dbSNP
rs1431300589 657 dbSNP
rs1392284693 676 dbSNP
rs1169404433 678 dbSNP
rs1479398175 687 dbSNP
rs1449250604 688 dbSNP
rs1175683287 696 dbSNP
rs769570860 697 dbSNP
rs1354599882 701 dbSNP
rs1256016492 707 dbSNP
rs1463128144 714 dbSNP
rs777431067 715 dbSNP
rs1343606078 733 dbSNP
rs1274912987 739 dbSNP
rs1227203599 748 dbSNP
rs1339876466 749 dbSNP
rs781299570 755 dbSNP
rs1448720713 762 dbSNP
rs1339838012 763 dbSNP
rs896069296 780 dbSNP
rs1332060067 787 dbSNP
rs1394382322 796 dbSNP
rs1014434367 799 dbSNP
rs1308939436 810 dbSNP
rs1395342361 812 dbSNP
rs1388746300 822 dbSNP
rs1165391041 840 dbSNP
rs192573004 843 dbSNP
rs745976969 846 dbSNP
rs184476427 876 dbSNP
rs1483787945 890 dbSNP
rs1222196035 893 dbSNP
rs1301251510 903 dbSNP
rs1427528620 906 dbSNP
rs1481850878 910 dbSNP
rs1027777635 913 dbSNP
rs1228698399 916 dbSNP
rs1308086404 919 dbSNP
rs775422468 922 dbSNP
rs986152375 929 dbSNP
rs1206736502 936 dbSNP
rs1352455863 953 dbSNP
rs1249790899 958 dbSNP
rs376515444 963 dbSNP
rs1223555796 966 dbSNP
rs138174104 969 dbSNP
rs1406324505 1004 dbSNP
rs976697252 1006 dbSNP
rs10521600 1019 dbSNP
rs1420145628 1024 dbSNP
rs1412120836 1026 dbSNP
rs1180867089 1040 dbSNP
rs1429713811 1047 dbSNP
rs1167733814 1054 dbSNP
rs1248112345 1088 dbSNP
rs777140926 1100 dbSNP
rs1221766795 1106 dbSNP
rs762232727 1112 dbSNP
rs945903693 1116 dbSNP
rs1210556025 1121 dbSNP
rs1424862775 1127 dbSNP
rs1287590238 1135 dbSNP
rs189185435 1136 dbSNP
rs1371190838 1144 dbSNP
rs191771976 1148 dbSNP
rs1330937640 1153 dbSNP
rs937046300 1158 dbSNP
rs1055479947 1174 dbSNP
rs369400557 1181 dbSNP
rs766556241 1182 dbSNP
rs1455194233 1186 dbSNP
rs1036595410 1191 dbSNP
rs989975018 1192 dbSNP
rs1341608917 1195 dbSNP
rs1244577373 1197 dbSNP
rs1246974136 1205 dbSNP
rs751842239 1207 dbSNP
rs898078945 1208 dbSNP
rs185046005 1209 dbSNP
rs1465131939 1215 dbSNP
rs1489762500 1263 dbSNP
rs781142436 1293 dbSNP
rs1206735557 1304 dbSNP
rs1315260636 1306 dbSNP
rs1280799449 1307 dbSNP
rs889224906 1321 dbSNP
rs1367208738 1332 dbSNP
rs189607299 1343 dbSNP
rs1019017178 1344 dbSNP
rs966060552 1351 dbSNP
rs767117949 1352 dbSNP
rs1366297251 1353 dbSNP
rs1486824676 1361 dbSNP
rs1429226738 1362 dbSNP
rs1360442262 1367 dbSNP
rs988138786 1371 dbSNP
rs1413353860 1390 dbSNP
rs749915195 1403 dbSNP
rs756031979 1408 dbSNP
rs1170022814 1411 dbSNP
rs777818585 1413 dbSNP
rs1020249162 1418 dbSNP
rs967251931 1436 dbSNP
rs978618913 1437 dbSNP
rs925751764 1450 dbSNP
rs1484177503 1453 dbSNP
rs1237945269 1454 dbSNP
rs749064779 1455 dbSNP
rs1210941503 1459 dbSNP
rs180678865 1476 dbSNP
rs1278466439 1477 dbSNP
rs1230883226 1482 dbSNP
rs1343395204 1488 dbSNP
rs991675104 1489 dbSNP
rs1381990842 1491 dbSNP
rs765770207 1506 dbSNP
rs916978551 1507 dbSNP
rs1446654906 1511 dbSNP
rs753247271 1529 dbSNP
rs759028213 1534 dbSNP
rs1389368519 1536 dbSNP
rs1168098025 1537 dbSNP
rs1425285389 1546 dbSNP
rs778177197 1550 dbSNP
rs186036004 1559 dbSNP
rs1433477074 1561 dbSNP
rs1287693030 1568 dbSNP
rs898085620 1580 dbSNP
rs189185264 1586 dbSNP
rs1483489216 1590 dbSNP
rs1453477243 1591 dbSNP
rs1317352821 1593 dbSNP
rs1049241881 1605 dbSNP
rs1323808327 1611 dbSNP
rs1314146006 1613 dbSNP
rs771642914 1621 dbSNP
rs1353074345 1631 dbSNP
rs1289646255 1638 dbSNP
rs1409861745 1641 dbSNP
rs1357582165 1654 dbSNP
rs181984947 1655 dbSNP
rs1459253376 1662 dbSNP
rs1350251512 1670 dbSNP
rs914403015 1674 dbSNP
rs1176510152 1675 dbSNP
rs748638137 1675 dbSNP
rs778453137 1675 dbSNP
rs1194289257 1676 dbSNP
rs1266378990 1679 dbSNP
rs1221531143 1682 dbSNP
rs1333376315 1686 dbSNP
rs1284654257 1687 dbSNP
rs1228486110 1688 dbSNP
rs1349265981 1689 dbSNP
rs770176284 1689 dbSNP
rs1252288584 1690 dbSNP
rs1368102536 1690 dbSNP
rs1318549737 1691 dbSNP
rs1459643739 1691 dbSNP
rs866592491 1694 dbSNP
rs1247412762 1696 dbSNP
rs763734935 1696 dbSNP
rs1457895993 1712 dbSNP
rs1363287264 1719 dbSNP
rs1461332783 1719 dbSNP
rs1435096933 1722 dbSNP
rs1184928163 1723 dbSNP
rs1007711219 1735 dbSNP
rs773809668 1747 dbSNP
rs1240843195 1753 dbSNP
rs1040901365 1761 dbSNP
rs1472244728 1766 dbSNP
rs1327939229 1773 dbSNP
rs1258413150 1776 dbSNP
rs1177475422 1785 dbSNP
rs1409160129 1787 dbSNP
rs781290492 1788 dbSNP
rs1009581288 1792 dbSNP
rs1402876970 1803 dbSNP
rs763298262 1811 dbSNP
rs1434249250 1812 dbSNP
rs967305837 1838 dbSNP
rs1131278 1839 dbSNP
rs1467605135 1844 dbSNP
rs145075261 1845 dbSNP
rs1032913638 1846 dbSNP
rs1453038325 1858 dbSNP
rs958809538 1862 dbSNP
rs1189835502 1864 dbSNP
rs1260215126 1883 dbSNP
rs1446902664 1883 dbSNP
rs774494227 1886 dbSNP
rs749392557 1899 dbSNP
rs1380727735 1901 dbSNP
rs571610496 1902 dbSNP
rs1231604493 1906 dbSNP
rs1280414571 1912 dbSNP
rs745891899 1917 dbSNP
rs767591416 1930 dbSNP
rs1298021094 1933 dbSNP
rs1375249273 1941 dbSNP
rs1227343694 1943 dbSNP
rs1221861309 1949 dbSNP
rs1336029443 1974 dbSNP
rs1397865450 1976 dbSNP
rs1402999346 1990 dbSNP
rs1267375294 1991 dbSNP
rs1433070659 1992 dbSNP
rs1392465675 2000 dbSNP
rs752700061 2001 dbSNP
rs1324233197 2019 dbSNP
rs1205532053 2020 dbSNP
rs1371848500 2032 dbSNP
rs1260680965 2035 dbSNP
rs1423943383 2070 dbSNP
rs769869094 2076 dbSNP
rs1204775055 2081 dbSNP
rs1234262966 2086 dbSNP
rs1483849198 2087 dbSNP
rs1274852092 2090 dbSNP
rs1471327704 2096 dbSNP
rs971083287 2110 dbSNP
rs1195023767 2111 dbSNP
rs1337126825 2116 dbSNP
rs971723899 2130 dbSNP
rs1180498644 2131 dbSNP
rs1245413615 2141 dbSNP
rs1356233876 2144 dbSNP
rs1292718547 2147 dbSNP
rs1411821685 2162 dbSNP
rs1412974946 2165 dbSNP
rs547857923 2173 dbSNP
rs930313517 2187 dbSNP
rs1049804122 2203 dbSNP
rs910805023 2204 dbSNP
rs1179264343 2211 dbSNP
rs185771453 2212 dbSNP
rs1165555541 2218 dbSNP
rs1414041681 2219 dbSNP
rs763937969 2221 dbSNP
rs534089734 2224 dbSNP
rs1040532231 2242 dbSNP
rs901928938 2245 dbSNP
rs1009630355 2270 dbSNP
rs1042423929 2275 dbSNP
rs1252095520 2276 dbSNP
rs903880082 2283 dbSNP
rs1180641039 2328 dbSNP
rs1435924125 2338 dbSNP
rs1000853882 2351 dbSNP
rs1210402345 2360 dbSNP
rs190673437 2367 dbSNP
rs5933863 2393 dbSNP
rs1345972540 2399 dbSNP
rs1231548578 2424 dbSNP
rs778858336 2425 dbSNP
rs1013173047 2439 dbSNP
rs565977578 2467 dbSNP
rs749211713 2468 dbSNP
rs971133462 2479 dbSNP
rs1280414532 2488 dbSNP
rs1281374793 2489 dbSNP
rs768528679 2493 dbSNP
rs768948350 2502 dbSNP
rs745479139 2509 dbSNP
rs1406269120 2518 dbSNP
rs758008057 2526 dbSNP
rs779803066 2528 dbSNP
rs984467769 2529 dbSNP
rs746470307 2543 dbSNP
rs1204051855 2551 dbSNP
rs1157687724 2552 dbSNP
rs1468257549 2563 dbSNP
rs1251518148 2569 dbSNP
rs1248056277 2585 dbSNP
rs1490631113 2585 dbSNP
rs907083806 2589 dbSNP
rs910805747 2590 dbSNP
rs1376431681 2591 dbSNP
rs1477705179 2592 dbSNP
rs1331369957 2596 dbSNP
rs1168603233 2598 dbSNP
rs1285022971 2610 dbSNP
rs1223247994 2618 dbSNP
rs35596456 2633 dbSNP
rs1131288 2653 dbSNP
rs768278727 2660 dbSNP
rs1276765623 2664 dbSNP
rs1442118219 2675 dbSNP
rs1040580320 2676 dbSNP
rs1428045431 2679 dbSNP
rs1324547806 2684 dbSNP
rs1437862555 2687 dbSNP
rs1157758008 2694 dbSNP
rs1345319044 2694 dbSNP
rs1131289 2695 dbSNP
rs200170538 2696 dbSNP
rs945513109 2696 dbSNP
rs1365961921 2697 dbSNP
rs1042517002 2698 dbSNP
rs1321446528 2704 dbSNP
rs1330469272 2707 dbSNP
rs181765673 2711 dbSNP
rs1465310019 2725 dbSNP
rs1241410147 2733 dbSNP
rs936700423 2758 dbSNP
rs1336932972 2765 dbSNP
rs1281064999 2780 dbSNP
rs1437241143 2789 dbSNP
rs1055099372 2809 dbSNP
rs1347662090 2814 dbSNP
rs1301673761 2815 dbSNP
rs1227194438 2822 dbSNP
rs774725331 2833 dbSNP
rs1288727784 2836 dbSNP
rs894402682 2837 dbSNP
rs1428050348 2842 dbSNP
rs1292136393 2844 dbSNP
rs1360371187 2852 dbSNP
rs1313159239 2853 dbSNP
rs1360532484 2870 dbSNP
rs1373194088 2886 dbSNP
rs1170291138 2892 dbSNP
rs1012758075 2893 dbSNP
rs1418728805 2894 dbSNP
rs761547845 2911 dbSNP
rs1225200435 2914 dbSNP
rs759946331 2917 dbSNP
rs907070297 2924 dbSNP
rs771695203 2927 dbSNP
rs767606238 2928 dbSNP
rs1239253407 2935 dbSNP
rs1211924249 2936 dbSNP
rs1278407681 2945 dbSNP
rs1026055573 2993 dbSNP
rs1265839380 3002 dbSNP
rs113269579 3007 dbSNP
rs760661373 3008 dbSNP
rs186324461 3014 dbSNP
rs148276976 3015 dbSNP
rs1293400746 3024 dbSNP
rs1243908605 3025 dbSNP
rs757294244 3037 dbSNP
rs965342862 3043 dbSNP
rs765077760 3044 dbSNP
rs1462358185 3049 dbSNP
rs1447810017 3054 dbSNP
rs768045253 3073 dbSNP
rs113748040 3080 dbSNP
rs1386112990 3084 dbSNP
rs1406994594 3088 dbSNP
rs1426266349 3090 dbSNP
rs1418423712 3094 dbSNP
rs760466687 3104 dbSNP
rs945565694 3115 dbSNP
rs750219691 3121 dbSNP
rs925367471 3128 dbSNP
rs1184593706 3132 dbSNP
rs1320269998 3138 dbSNP
rs1251090240 3139 dbSNP
rs1202811546 3150 dbSNP
rs1324064836 3151 dbSNP
rs1274283943 3152 dbSNP
rs758251946 3153 dbSNP
rs1055548577 3168 dbSNP
rs1353008861 3178 dbSNP
rs1289904712 3185 dbSNP
rs191280111 3196 dbSNP
rs949370050 3213 dbSNP
rs1315240711 3232 dbSNP
rs1438296631 3239 dbSNP
rs1045665615 3251 dbSNP
rs751282154 3252 dbSNP
rs1164056343 3259 dbSNP
rs754385158 3268 dbSNP
rs1415758834 3271 dbSNP
rs780681311 3284 dbSNP
rs1419923169 3289 dbSNP
rs993300294 3312 dbSNP
rs749753048 3321 dbSNP
rs1026111340 3333 dbSNP
rs1175857327 3348 dbSNP
rs535980032 3353 dbSNP
rs1254244613 3357 dbSNP
rs1213612888 3359 dbSNP
rs1332082849 3364 dbSNP
rs763485987 3385 dbSNP
rs1005938435 3387 dbSNP
rs142848965 3403 dbSNP
rs746216969 3404 dbSNP
rs147352903 3409 dbSNP
rs1220749908 3417 dbSNP
rs35182780 3425 dbSNP
rs757576949 3429 dbSNP
rs1243930130 3435 dbSNP
rs1325212167 3439 dbSNP
rs966916902 3446 dbSNP
rs1438581119 3448 dbSNP
rs1390688981 3453 dbSNP
rs1290745596 3465 dbSNP
rs978257891 3469 dbSNP
rs1185745227 3473 dbSNP
rs925449865 3474 dbSNP
rs1157179417 3514 dbSNP
rs1367658982 3516 dbSNP
rs760955867 3522 dbSNP
rs990944906 3523 dbSNP
rs916649807 3524 dbSNP
rs539619589 3526 dbSNP
rs1264425759 3531 dbSNP
rs949423557 3539 dbSNP
rs1485225106 3540 dbSNP
rs139499007 3548 dbSNP
rs928561208 3549 dbSNP
rs1386376112 3557 dbSNP
rs1456202053 3569 dbSNP
rs929203495 3570 dbSNP
rs186930115 3580 dbSNP
rs1302445996 3587 dbSNP
rs1336782122 3614 dbSNP
rs762641153 3619 dbSNP
rs1384425480 3621 dbSNP
rs1393917702 3629 dbSNP
rs887644136 3634 dbSNP
rs1382906320 3638 dbSNP
rs1311654102 3641 dbSNP
rs1006447467 3645 dbSNP
rs1287375739 3664 dbSNP
rs1038820284 3668 dbSNP
rs1340180612 3679 dbSNP
rs900244244 3680 dbSNP
rs1240230260 3681 dbSNP
rs1290706028 3689 dbSNP
rs1452887008 3707 dbSNP
rs555809668 3721 dbSNP
rs1029963153 3735 dbSNP
rs1194498704 3737 dbSNP
rs756386839 3739 dbSNP
rs1259013545 3753 dbSNP
rs1212634052 3754 dbSNP
rs190950166 3756 dbSNP
rs377672321 3768 dbSNP
rs1279088339 3769 dbSNP
rs1208485704 3773 dbSNP
rs1341198349 3776 dbSNP
rs751102408 3795 dbSNP
rs999811064 3809 dbSNP
rs1032989480 3838 dbSNP
rs1208691829 3839 dbSNP
rs1226565586 3839 dbSNP
rs958271801 3841 dbSNP
rs183557886 3842 dbSNP
rs370901968 3846 dbSNP
rs1312438409 3851 dbSNP
rs867833861 3866 dbSNP
rs1399074282 3890 dbSNP
rs1169034795 3893 dbSNP
rs916680194 3894 dbSNP
rs13648 3924 dbSNP
rs187490993 3949 dbSNP
rs1189456491 3950 dbSNP
rs1475217428 3959 dbSNP
rs1409608507 3964 dbSNP
rs1185341681 3977 dbSNP
rs1439386732 3987 dbSNP
rs1462503879 3991 dbSNP
rs1472212384 4005 dbSNP
rs1177140446 4011 dbSNP
rs918561170 4016 dbSNP
rs779383028 4020 dbSNP
rs1274898984 4024 dbSNP
rs929964054 4039 dbSNP
rs1235228213 4047 dbSNP
rs1407652449 4060 dbSNP
rs1464108936 4067 dbSNP
rs1292975868 4075 dbSNP
rs1047661628 4090 dbSNP
rs1301845462 4106 dbSNP
rs193028873 4107 dbSNP
rs1396798684 4110 dbSNP
rs1329993363 4117 dbSNP
rs1392292451 4143 dbSNP
rs941906151 4151 dbSNP
rs1167725380 4157 dbSNP
rs1461572417 4158 dbSNP
rs1416486624 4169 dbSNP
rs749413848 4180 dbSNP
rs1233060680 4187 dbSNP
rs1180825398 4191 dbSNP
rs1228301284 4195 dbSNP
rs1435806879 4206 dbSNP
rs1254875903 4210 dbSNP
rs1214239451 4211 dbSNP
rs1468993471 4214 dbSNP
rs1272597772 4235 dbSNP
rs1226625120 4237 dbSNP
rs1284552747 4242 dbSNP
rs1039245140 4244 dbSNP
rs1313956547 4245 dbSNP
rs1231177058 4255 dbSNP
rs900254130 4262 dbSNP
rs772259016 4263 dbSNP
rs1238860114 4275 dbSNP
rs1375146075 4276 dbSNP
rs759323587 4277 dbSNP
rs1442256929 4281 dbSNP
rs1481098869 4282 dbSNP
rs1051441337 4283 dbSNP
rs1401873026 4297 dbSNP
rs754907420 4303 dbSNP
rs1408285267 4306 dbSNP
rs1157616781 4324 dbSNP
rs1468468444 4327 dbSNP
rs1396625779 4329 dbSNP
rs1194236130 4340 dbSNP
rs1467992754 4346 dbSNP
rs1249334382 4349 dbSNP
rs1219485637 4350 dbSNP
rs1448802471 4368 dbSNP
rs1285304816 4377 dbSNP
rs778741171 4378 dbSNP
rs1352025638 4380 dbSNP
rs780499089 4381 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000217961.4 | 3UTR | UUGGCUAUAAUUUCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
113 hsa-miR-3123 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT058369 TBCEL tubulin folding cofactor E like 2 4
MIRT059816 EFNA1 ephrin A1 2 2
MIRT066850 TMEM19 transmembrane protein 19 2 2
MIRT071503 CALM1 calmodulin 1 2 6
MIRT073758 NUBP1 nucleotide binding protein 1 2 2
MIRT074324 TNRC6A trinucleotide repeat containing 6A 2 10
MIRT094805 LMNB1 lamin B1 2 2
MIRT099173 MAP3K4 mitogen-activated protein kinase kinase kinase 4 2 2
MIRT099545 ID4 inhibitor of DNA binding 4, HLH protein 2 2
MIRT122643 E2F3 E2F transcription factor 3 2 2
MIRT180918 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 8
MIRT192844 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 2 2
MIRT224984 BAG4 BCL2 associated athanogene 4 2 2
MIRT246065 NRAS NRAS proto-oncogene, GTPase 2 2
MIRT357085 PRRC1 proline rich coiled-coil 1 2 2
MIRT378170 C5ORF51 chromosome 5 open reading frame 51 2 2
MIRT441636 KDM5A lysine demethylase 5A 2 2
MIRT441802 BCAS1 breast carcinoma amplified sequence 1 2 2
MIRT443019 C21orf91 chromosome 21 open reading frame 91 2 2
MIRT443445 SERPINB4 serpin family B member 4 2 2
MIRT443661 SERPINB3 serpin family B member 3 2 2
MIRT443776 STS steroid sulfatase 2 2
MIRT444663 TSPAN14 tetraspanin 14 2 2
MIRT444924 KIAA1522 KIAA1522 2 2
MIRT445378 FOXO1 forkhead box O1 2 2
MIRT447920 PAIP2B poly(A) binding protein interacting protein 2B 2 2
MIRT449202 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT449713 TSPYL1 TSPY like 1 2 2
MIRT450403 TMEM47 transmembrane protein 47 2 2
MIRT450787 PAPOLG poly(A) polymerase gamma 2 2
MIRT451381 C19orf43 telomerase RNA component interacting RNase 2 2
MIRT452507 WDR1 WD repeat domain 1 2 2
MIRT453264 PARP11 poly(ADP-ribose) polymerase family member 11 2 2
MIRT454642 FAM83H family with sequence similarity 83 member H 2 2
MIRT455513 C6orf106 chromosome 6 open reading frame 106 2 2
MIRT456709 LDB1 LIM domain binding 1 2 2
MIRT457231 AP3D1 adaptor related protein complex 3 delta 1 subunit 2 2
MIRT459235 MRPS21 mitochondrial ribosomal protein S21 2 2
MIRT460553 IFNAR1 interferon alpha and beta receptor subunit 1 2 4
MIRT461424 CTSL2 cathepsin V 2 3
MIRT462869 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT467178 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT469233 RHOBTB3 Rho related BTB domain containing 3 2 2
MIRT474125 LIPC lipase C, hepatic type 2 2
MIRT475509 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT478134 DHX36 DEAH-box helicase 36 2 2
MIRT481326 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle 2 2
MIRT482003 AMOTL2 angiomotin like 2 2 2
MIRT482230 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT483436 RHOXF2B Rhox homeobox family member 2B 2 2
MIRT483824 ZC3H12B zinc finger CCCH-type containing 12B 2 2
MIRT492051 TNFSF9 TNF superfamily member 9 2 2
MIRT494114 DLX6 distal-less homeobox 6 2 2
MIRT498882 ZNF12 zinc finger protein 12 2 10
MIRT499674 NPHP3 nephrocystin 3 2 2
MIRT506932 IGDCC4 immunoglobulin superfamily DCC subclass member 4 2 6
MIRT509461 ZNF587 zinc finger protein 587 2 6
MIRT510048 AKR1B10 aldo-keto reductase family 1 member B10 2 4
MIRT514807 NWD1 NACHT and WD repeat domain containing 1 2 2
MIRT515217 CRCP CGRP receptor component 2 2
MIRT515486 INCENP inner centromere protein 2 4
MIRT517765 ZNF366 zinc finger protein 366 2 4
MIRT518216 TRMT10B tRNA methyltransferase 10B 2 2
MIRT519602 ZNF805 zinc finger protein 805 2 2
MIRT523570 GGCX gamma-glutamyl carboxylase 2 4
MIRT525795 SOD2 superoxide dismutase 2 2 2
MIRT533055 ZBTB37 zinc finger and BTB domain containing 37 2 2
MIRT534218 SLC37A3 solute carrier family 37 member 3 2 4
MIRT535633 NR2E1 nuclear receptor subfamily 2 group E member 1 2 2
MIRT535863 MRPL17 mitochondrial ribosomal protein L17 2 2
MIRT536344 LEFTY1 left-right determination factor 1 2 2
MIRT537923 DSTYK dual serine/threonine and tyrosine protein kinase 2 2
MIRT543114 SKA2 spindle and kinetochore associated complex subunit 2 2 2
MIRT544717 ZNF529 zinc finger protein 529 2 2
MIRT544847 BASP1 brain abundant membrane attached signal protein 1 2 4
MIRT545536 ARF3 ADP ribosylation factor 3 2 2
MIRT547124 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 2 2
MIRT548070 GIGYF1 GRB10 interacting GYF protein 1 2 2
MIRT548446 EIF1AX eukaryotic translation initiation factor 1A, X-linked 2 2
MIRT548626 DAZAP1 DAZ associated protein 1 2 4
MIRT550259 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT551940 AKAP8 A-kinase anchoring protein 8 2 4
MIRT552511 ZIK1 zinc finger protein interacting with K protein 1 2 4
MIRT554015 SPIRE1 spire type actin nucleation factor 1 2 2
MIRT556647 KPNA2 karyopherin subunit alpha 2 2 4
MIRT559744 ACOX1 acyl-CoA oxidase 1 2 2
MIRT560393 TMEM254 transmembrane protein 254 2 2
MIRT562234 HMGB2 high mobility group box 2 2 2
MIRT563325 ORC4 origin recognition complex subunit 4 2 2
MIRT563697 RPS26 ribosomal protein S26 2 2
MIRT565066 USP25 ubiquitin specific peptidase 25 2 2
MIRT565349 TMED2 transmembrane p24 trafficking protein 2 2 2
MIRT565624 SLC31A1 solute carrier family 31 member 1 2 2
MIRT566379 PNISR PNN interacting serine and arginine rich protein 2 2
MIRT567575 FEM1C fem-1 homolog C 2 2
MIRT569383 DDX20 DEAD-box helicase 20 2 2
MIRT570037 FAM228A family with sequence similarity 228 member A 2 2
MIRT573269 DCAF10 DDB1 and CUL4 associated factor 10 2 2
MIRT573912 PARP1 poly(ADP-ribose) polymerase 1 2 2
MIRT620034 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 2 2
MIRT635606 ZWILCH zwilch kinetochore protein 2 2
MIRT644413 FRMD6 FERM domain containing 6 2 2
MIRT652528 TM9SF4 transmembrane 9 superfamily member 4 2 2
MIRT656238 MFSD6 major facilitator superfamily domain containing 6 2 2
MIRT661373 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT662530 PNPLA4 patatin like phospholipase domain containing 4 2 2
MIRT675551 MALL mal, T-cell differentiation protein like 2 2
MIRT693650 ACBD7 acyl-CoA binding domain containing 7 2 2
MIRT696348 SLC35D2 solute carrier family 35 member D2 2 2
MIRT705815 AKNA AT-hook transcription factor 2 2
MIRT707632 TARDBP TAR DNA binding protein 2 2
MIRT717902 COPS8 COP9 signalosome subunit 8 2 2
MIRT723626 SOBP sine oculis binding protein homolog 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3123 Doxorubicin 31703 NSC123127 approved sensitive High Triple-Negative Breast Cancer cell line (MDA-MB-231, MDA-MB-468)
hsa-mir-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3123 Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-3123 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3123 Vemurafenib 42611257 NSC761431 approved resistant cell line (LM16)

Error report submission