miRTarBase - #MIRT443841


—
pre-miRNA Information
pre-miRNA hsa-mir-1343   
Genomic Coordinates chr11: 34941837 - 34941920
Description Homo sapiens miR-1343 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-1343-5p
Sequence 15| UGGGGAGCGGCCCCCGGGUGGG |36
Evidence Experimental
Experiments Illumina
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN29873831 3 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1302698960 4 dbSNP
rs897591588 5 dbSNP
rs1462253052 6 dbSNP
rs997178314 8 dbSNP
rs1294135247 9 dbSNP
rs1343991723 10 dbSNP
rs1429293990 10 dbSNP
rs1342635997 11 dbSNP
rs1245988197 13 dbSNP
rs1293460739 14 dbSNP
rs1351900954 15 dbSNP
rs780381445 16 dbSNP
rs1269443124 18 dbSNP
rs2986407 19 dbSNP
rs975734437 20 dbSNP
rs1259653875 21 dbSNP
rs530036940 22 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RGS6   
Synonyms GAP, HA117, S914
Description regulator of G protein signaling 6
Transcript NM_004296   
Expression
Putative miRNA Targets on RGS6
3'UTR of RGS6
(miRNA target sites are highlighted)		 
>RGS6|NM_004296|3'UTR
   1 CCGTTCCTACCGCAGGTCCAGGGCCTGGGCCCGCGGACCCCACAGGCAGGCGGCGGCGCTCCACATCTGCGGACAGAGTT
  81 TCCTTACGAGGAGACTTGGTCACTGTGAAGGAGAAAGAGTGAGGGCAATGAAGGGCGATGGTGGGGAGACTCGGTGGGTG
 161 AATGGGGAGACCAGAAAGAAAGAGTCCACAGAGCCTGGGCTGGGCCCGGTGGAGGCTCCTGTTTACAGCCCTCTCTTCTT
 241 TGTACAGTTGTATTCCAACACTCCACTCGCTAAGAGGCCCTGATCCCAGCTCATTCAGGGGAGAACACGTCGTGGGGTTC
 321 CTGTCACGACTATCACTTGAGATTATATTATTATCCTCACTCCCTCGCTGTCTGGAGACGGTCACACCTTCTGGCAAATT
 401 CAAGAGGCATGAGTGGACCGAGAGCACATCCAGCATTTGCATCACCTCCCTGGCACCTCCCATAGTTACAGCCACTACAT
 481 CCCCACCGCCGCCTGTCATCCCTCACGTCTCTGTGGCCACCCGGGTGTCACTGCCAGCACCAGGCACTGCTTTCACGTAA
 561 AATGTCCAAATCACATCTTCAGCAAGAAAGCAACCTCACGGATTGCCCCGCCTCAAGGTCTTTCCACCCTCTTTGAGATC
 641 AGCGTTCGGAGAGGTCCCCGCCAGCCCGGTGGCTGCCCTCAGGTCCCGTCACATGTCTCAAGGGTCCAGCGTTCGAGGAA
 721 GCACTGTTGTAGATGACAGAGCTTTTTGTTTCACAGCTGCGGGGATTCTGCTGACCATCTTTTAGAAAATTATTTCATAA
 801 TTTATTCTGGCTTTGCCCCCTTGCTCCTTGGTTTATTCCCTCATGTTTTACTCAAAATAAACATGGCCATGAACTCAGGG
 881 GCCATTGGGATTCTCCCCTCTGGCAGCCCCAGGTGGGAGCTGGGAGGGTCCCCAGCCCAGGAGGTGGCTGGATTGCAGGG
 961 CTGGCAGCCCCCACGTGGTGGCATCCTGACAGGCACAGTGAGACCCTTGCTGGGTCAGGTCTCCTTTGTGTGTGAAGCTG
1041 GGGCAGAGTATGCTACGAAGGGACCAGGCCAGGCCACAGGGCTCTCCTCCCAGTCTTTATCTGAAGGCCCAGCCAAAGCA
1121 CCCCTCTAAACCGGTCACCTAGGGGAAATGCAAAAACCTGCAAAAGATCCACCTGTATTCCCTGTGTGTGTGTGTCAAAA
1201 TGACCATTTGCCAACCTGGCTGTGAGGTAATGTATGTAAAGCACCGAGTCAGGTGCCTGATACGCAGTAGGTGCTTAGCA
1281 AACGGTAGCTAATACTATCATCATTGTCATTGTTATTGTGACACCCATGAGCCCACAGACAGAGCTGTATTAAGTAACCT
1361 GTTTTGAATCCAGACATTCACTCCCCCACTTGCTATGACTACCCTCCTTTGATCTATTTTTGGTCATAGGTAAAAAAAAA
1441 AATCTCTCTTGGGAGCATATAAACAAAAAACATAGAAGCAATAAAGCGATCGCTGGTATTTCTTTTCTCATGCAGCCAAA
1521 TTCGCCAGCTGGTGACCAAAGGCTCAGATGCTTGCTTATTTGCAGACCCGGCCTCCTGGGTGCTCCCCAGTGACCCATCT
1601 TTCCACCCCACCACCTCCAAGTCCTGTCTATGTCTGCTTCCACACAGCCCTGTCCCCAGGGCACCAGCCTTCTGTCCCTC
1681 ACAGCAGTGCCATCGCGGGCATTAGGAGTCTTCGTTATGTTGTATCCTTGTGAGTTCTTGACTACCATGCCCAAGTTTCC
1761 CCCACTGGCAATGGTTCCTCTCTTGGAGGTACAGTGGAAACCAGAGAGATGACAGATGTTGAGTCCTCAGTGTCTCAGAG
1841 GCAGCAATTCTTGCTGGACACCTGCACATGCTCAGCACAGAGGCTGGTACTTTGGAGGCACTAACCACTTGATGAGTAAA
1921 TCAATGGCATAAAGCCCCATTCCAAGTTATGGGGTCTTTTGACAGGCCCCTTTCATCCTCTTTCTCTTTGTATAAACCTC
2001 ATGTTTCAGAACAAAATTACAGTCTAAGTTCATTTGCCCCCAGCCTTGCCCAAGGATCCCCGGGCTGTGCTGACCCCTAG
2081 GCATAGGGCAAAGGGTGTTCCCAAGCAGCAGGCACCTCAGTGCCCTCAGTTATCCAGGGCAAGGGGCCTGGCTGCCCCCT
2161 GCTCCTCCCCATGATGCAGGGGCTTTCTAAGCCAGGCTGCAGACAGGGCAGGGTTGGCTTCTTGGCCATTCCCTCTGTGC
2241 CCCCTTCTCCTTCTGACTGGTCTCACCCTGGAGATCCCCAGAGGATCTGACCAGAGCCAGGTGGACTGTGGCCCTGAGAT
2321 GGAGCTGGCTGCAGGCTTACAAGCACCTCTGGGGACATCCAGAGGGGAGGGTCAGTAAGCACAACGGAGCTAGGGAGACT
2401 TCAGATGGACTCAAACCCAGAGCAATAATACTCTCACACCACCCCACAGCTAAGGCACTCATGTTCCCCAGTAGATCAAG
2481 CCAGAAGCTTTGCAAGAAGGGAGTGGAACGAGGCTGCCTATCCAAGGTCCATCTACCACGCAGAACTTGGTCATGCAAGT
2561 ACATTTGGAAAATCTGGTCTTGGCCCGTCCCCCATTGGCCTGGTCTACACAGCCAAAAATTCAGACTAGATTAGATGTTT
2641 GCAGGCAATTCTGTAGCAAAGCAAATTCCCCTACCCCGTCCCTTCCCCCTAGAAGCTGCCTTAGCCTCCCTGACTGGGTG
2721 TGGTCTCTGGGCCTAGGACTCCTCCCTATGAGGAAAAGTGCTCTCCAGCCACATCTTGGCAGCCCCACAACCACAGCATC
2801 AGGGCAGCTGCAGCAAGTGACCACCCACCCGTCGGGTTAGACACACAAGGCACCAGGCACTGGCATCTGACTAAAATAAC
2881 CTTTCCCTACATGGGAAGAGGAAAGCTTGTAGGCTGGCACATATAAACGTCCAGCCGCAGCCAGATGGCCTGAACTAAGC
2961 AGCAGGAACTCTCTGGGCTGGGGAGGAGCCTCCTGCCCTTCTAGAAAGTGATGCGTCAGCTTTGTTCTCCTGGGAAGGTG
3041 TTGCTATACCCCAGGAACAAAGCAGGGCCCAACTGCCAGTGCAGTCAGCTGGGCCTGCGCTCCAGGCTCACCACCGCTAA
3121 GTGGTCAGGTACCGGGCCAGCATCCTGGGAGGGACCTCTTGCGACTCTGAGTTGCAGCTTGGACTAGCTGAACACATGGG
3201 GACATGCTCCAGGGGCTTCTTCCCTGGCAGGATTCCTGGGATTTCAAACTACCTCACCAACAGGACGCTGAACCAGGAGC
3281 CTGCCACCCAACTGGCCCCCTTGGTGATTGTGGAAGGTGATGTTTTTCCTAAAATGCATCCCTCCTGTTCTGCTCCATAT
3361 ACATGTGCTTCAAAAACCACCACCAGGAAAGCCTTCCCAGAAGAGGGAAAGGATTAAGGGCTCTCTTCCTTTGGGCCCTG
3441 CAGAATGTATTGGAGGGAGGTGTTGCTGCAAGGTCCAGGAGCTGGGAAACTCTGGGCTCGGGGGGAGATAATGCACCACC
3521 AGCCTCAAAAAGGAGCTGCCCAAGTTGAATATGTAGCAAAGACCATGGGATAAGTTGAATAGTGGCCAGACGAATCACTA
3601 ATAACTCACCATGGGACCCTCTGAAGAGAGGCCTGTGCTCGTGTAACCATAGCAACAGCAGATGCCAGCAACCTACTCAT
3681 TAGTACCACCCAGTGATAAGGCATCCCCTGGGCTAGACCCAGGGGCCATAAAGTAGCAAAGTAGCAAATGTAGCAATAAA
3761 GGGCCCGGGTCTATACGGGGACAGGGTCCAAATGACCAGGACTTGGCCCTCTCCCCAGCCCCGATGAGGGCTCAGAGCCA
3841 GCTGCTGTCAGCTGTCTGGGGAGGGAAGGCCCTGCTCCATACCAGGGGTCCCTGTTCTATACTCTAAGCCCACTCACCGC
3921 ATGATCACGGACTCATCGGAATGGCCTCCTCTTAGTGCATGTGGTTCTCTTTAGTTTATTTTTCTGGAATTTGGGGATTG
4001 GACCCCAGAACCAAACATGCTGGTACAGTCTAAAAATAAATGACTTGAACCCACTTCAATCCAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gggUGGGCC------CCCGGCGAGGGGu 5'
             ||||||      ||| :||||||| 
Target 5' cagACCCGGCCTCCTGGG-TGCTCCCCa 3'
 1563 - 1589 160.00 -33.20
2 
miRNA  3' gggUGGGCCCCCGG----CGAGGGGu 5'
             :||:||  |||    |||||:| 
Target 5' gggGCCTGGCTGCCCCCTGCTCCTCc 3'
 2143 - 2168 141.00 -25.80
3 
miRNA  3' gggUGGGCC--CCCGG-----CGAGGGGu 5'
             ||| ||   ||||     ||||:|| 
Target 5' gggACCAGGCCAGGCCACAGGGCTCTCCt 3'
 1060 - 1088 137.00 -21.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN19727191 3 COSMIC
COSN30165045 13 COSMIC
COSN31503995 19 COSMIC
COSN30490051 20 COSMIC
COSN30180653 28 COSMIC
COSN31612518 33 COSMIC
COSN30472192 34 COSMIC
COSN23869964 35 COSMIC
COSN30613665 36 COSMIC
COSN30183863 42 COSMIC
COSN26992160 52 COSMIC
COSN31494204 53 COSMIC
COSN31559594 55 COSMIC
COSN14495981 58 COSMIC
COSN31511531 68 COSMIC
COSN16627133 72 COSMIC
COSN30466778 83 COSMIC
COSN15618614 114 COSMIC
COSN17218346 131 COSMIC
COSN31555241 196 COSMIC
COSN29249062 231 COSMIC
COSM6893287 264 COSMIC
COSM5637052 269 COSMIC
COSN7025942 309 COSMIC
COSN20040085 310 COSMIC
COSN13594518 312 COSMIC
COSN13594519 328 COSMIC
COSN13594520 329 COSMIC
COSN8588917 335 COSMIC
COSN24650928 380 COSMIC
COSN17015444 409 COSMIC
COSN31611567 492 COSMIC
COSN6638514 533 COSMIC
COSN1170829 558 COSMIC
COSN25368419 641 COSMIC
COSN27346626 644 COSMIC
COSN7025943 660 COSMIC
COSN1170830 672 COSMIC
COSN22500663 895 COSMIC
COSN29774010 1195 COSMIC
COSN28355341 1265 COSMIC
COSN20111446 1443 COSMIC
COSN30037142 1561 COSMIC
COSN6258110 1587 COSMIC
COSN30435432 1718 COSMIC
COSN15255676 1922 COSMIC
COSN31961004 1923 COSMIC
COSN23488069 2910 COSMIC
COSN15955567 2949 COSMIC
COSN7025944 3015 COSMIC
COSN17294440 3378 COSMIC
COSN8849469 3482 COSMIC
COSN26123731 3642 COSMIC
COSN32056840 3688 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs756466248 2 dbSNP
rs1347206888 3 dbSNP
rs2074647 4 dbSNP
rs745310743 8 dbSNP
rs1033993808 9 dbSNP
rs72547271 12 dbSNP
rs370836962 13 dbSNP
rs1251407107 14 dbSNP
rs1247712711 17 dbSNP
rs1056046029 19 dbSNP
rs1490032411 20 dbSNP
rs1219847897 21 dbSNP
rs746562484 24 dbSNP
rs755771706 25 dbSNP
rs1186293243 26 dbSNP
rs1417735390 27 dbSNP
rs770456663 28 dbSNP
rs375212923 31 dbSNP
rs199552071 33 dbSNP
rs200511071 34 dbSNP
rs759184484 35 dbSNP
rs765143529 36 dbSNP
rs775364783 44 dbSNP
rs1300013846 45 dbSNP
rs746359 46 dbSNP
rs1415618617 47 dbSNP
rs112394310 48 dbSNP
rs764193121 52 dbSNP
rs751500657 53 dbSNP
rs1416392599 55 dbSNP
rs923436369 56 dbSNP
rs1003959727 58 dbSNP
rs1305207246 59 dbSNP
rs1019280312 66 dbSNP
rs1477076248 70 dbSNP
rs964994922 71 dbSNP
rs546695314 72 dbSNP
rs1236400245 73 dbSNP
rs1157273047 75 dbSNP
rs1207505904 77 dbSNP
rs1363299288 78 dbSNP
rs1303841953 88 dbSNP
rs1050525081 89 dbSNP
rs1028207209 92 dbSNP
rs1280012182 100 dbSNP
rs72547272 114 dbSNP
rs1387056374 121 dbSNP
rs989721528 130 dbSNP
rs1378449560 132 dbSNP
rs1301169882 133 dbSNP
rs942046349 134 dbSNP
rs375414399 136 dbSNP
rs1345956587 137 dbSNP
rs76858694 138 dbSNP
rs753560046 139 dbSNP
rs1304489752 140 dbSNP
rs1412395654 146 dbSNP
rs188258238 148 dbSNP
rs938678331 149 dbSNP
rs1315749164 151 dbSNP
rs1047349279 154 dbSNP
rs1055780790 159 dbSNP
rs916152211 166 dbSNP
rs1042871 168 dbSNP
rs1227979002 170 dbSNP
rs1357950025 173 dbSNP
rs931550633 179 dbSNP
rs1230074560 189 dbSNP
rs141017216 194 dbSNP
rs1003100597 199 dbSNP
rs1358171945 201 dbSNP
rs1243125565 203 dbSNP
rs757321154 207 dbSNP
rs1004395240 208 dbSNP
rs72547273 209 dbSNP
rs900900019 211 dbSNP
rs1457803937 216 dbSNP
rs767593800 219 dbSNP
rs1187654156 221 dbSNP
rs1385133856 231 dbSNP
rs1442918698 234 dbSNP
rs1312584760 237 dbSNP
rs1165540656 241 dbSNP
rs1385867697 242 dbSNP
rs1400367265 246 dbSNP
rs771722303 256 dbSNP
rs1385380860 257 dbSNP
rs1235731087 261 dbSNP
rs1343257692 263 dbSNP
rs958447203 264 dbSNP
rs1239726896 266 dbSNP
rs996484051 269 dbSNP
rs750634949 270 dbSNP
rs1450278260 277 dbSNP
rs1316556432 278 dbSNP
rs1359470108 279 dbSNP
rs1222880075 280 dbSNP
rs958203002 281 dbSNP
rs1021212618 291 dbSNP
rs968048875 295 dbSNP
rs1360183661 299 dbSNP
rs1480975129 300 dbSNP
rs1285403427 301 dbSNP
rs1181390807 304 dbSNP
rs1021244575 308 dbSNP
rs778623514 309 dbSNP
rs539223637 310 dbSNP
rs780405176 312 dbSNP
rs1460374081 313 dbSNP
rs1185902049 318 dbSNP
rs757877122 320 dbSNP
rs1469665587 322 dbSNP
rs1175750705 323 dbSNP
rs755326255 328 dbSNP
rs781671647 329 dbSNP
rs761779616 333 dbSNP
rs1182165389 335 dbSNP
rs915908207 336 dbSNP
rs919234726 343 dbSNP
rs929900687 344 dbSNP
rs192961727 348 dbSNP
rs1490503285 355 dbSNP
rs1262509476 356 dbSNP
rs1046997070 368 dbSNP
rs573132567 379 dbSNP
rs907101745 380 dbSNP
rs1261521995 381 dbSNP
rs550852906 382 dbSNP
rs1309618404 384 dbSNP
rs1406046372 388 dbSNP
rs540235667 388 dbSNP
rs908731019 393 dbSNP
rs1296939020 409 dbSNP
rs1361969539 411 dbSNP
rs1205890164 419 dbSNP
rs368022352 420 dbSNP
rs1465242180 421 dbSNP
rs569434773 426 dbSNP
rs17780615 435 dbSNP
rs1480670190 443 dbSNP
rs532064530 448 dbSNP
rs902874097 451 dbSNP
rs1168084314 457 dbSNP
rs1353753348 461 dbSNP
rs146293115 462 dbSNP
rs998915154 466 dbSNP
rs10138069 470 dbSNP
rs1482416704 472 dbSNP
rs955128377 476 dbSNP
rs1020884895 484 dbSNP
rs986298819 488 dbSNP
rs367784138 489 dbSNP
rs1221019128 491 dbSNP
rs144749201 492 dbSNP
rs1318447378 494 dbSNP
rs963468932 508 dbSNP
rs1399585917 511 dbSNP
rs960147175 514 dbSNP
rs973460333 516 dbSNP
rs991571356 517 dbSNP
rs919315584 522 dbSNP
rs561258128 523 dbSNP
rs982512651 524 dbSNP
rs528715441 526 dbSNP
rs938568213 528 dbSNP
rs8020134 533 dbSNP
rs571300705 534 dbSNP
rs1422185434 536 dbSNP
rs1258492327 538 dbSNP
rs1204615630 541 dbSNP
rs947205304 542 dbSNP
rs1256564057 549 dbSNP
rs1206873579 557 dbSNP
rs538375023 568 dbSNP
rs1340713916 575 dbSNP
rs1042843301 576 dbSNP
rs1261508484 579 dbSNP
rs902925711 595 dbSNP
rs998573888 600 dbSNP
rs1316698865 601 dbSNP
rs1243625952 604 dbSNP
rs1030369189 606 dbSNP
rs1484179381 610 dbSNP
rs773157831 611 dbSNP
rs532665124 612 dbSNP
rs550815869 615 dbSNP
rs1329084804 630 dbSNP
rs1418526460 631 dbSNP
rs1397097500 632 dbSNP
rs1428962616 636 dbSNP
rs1253879030 641 dbSNP
rs1370284457 643 dbSNP
rs1007784895 644 dbSNP
rs1017802880 645 dbSNP
rs188241640 648 dbSNP
rs192592589 649 dbSNP
rs1360440974 652 dbSNP
rs1026432341 657 dbSNP
rs1208637537 659 dbSNP
rs950859274 660 dbSNP
rs573136941 661 dbSNP
rs1363019690 663 dbSNP
rs10138291 666 dbSNP
rs1375721907 667 dbSNP
rs959967433 668 dbSNP
rs533979312 669 dbSNP
rs1322750395 670 dbSNP
rs1403540700 673 dbSNP
rs1367486278 676 dbSNP
rs1164324275 679 dbSNP
rs753374462 684 dbSNP
rs1419232836 685 dbSNP
rs1281568545 686 dbSNP
rs1323114460 688 dbSNP
rs754725803 689 dbSNP
rs1043281985 690 dbSNP
rs1197286701 694 dbSNP
rs924389649 696 dbSNP
rs184553211 697 dbSNP
rs1270352872 708 dbSNP
rs534069749 711 dbSNP
rs558620113 712 dbSNP
rs1486036143 713 dbSNP
rs764808166 715 dbSNP
rs558618725 716 dbSNP
rs368554456 717 dbSNP
rs1176762030 723 dbSNP
rs1426645990 727 dbSNP
rs899406615 728 dbSNP
rs1347302252 731 dbSNP
rs752302999 735 dbSNP
rs1430051194 739 dbSNP
rs1399476548 742 dbSNP
rs1358768976 743 dbSNP
rs1161479194 756 dbSNP
rs1015974408 757 dbSNP
rs138665205 761 dbSNP
rs950843533 762 dbSNP
rs1430570580 766 dbSNP
rs1193656918 772 dbSNP
rs1487667410 777 dbSNP
rs1004014368 779 dbSNP
rs922796337 785 dbSNP
rs1217447263 788 dbSNP
rs1301650093 796 dbSNP
rs1447243657 799 dbSNP
rs1277542117 809 dbSNP
rs1217238011 817 dbSNP
rs1035050249 824 dbSNP
rs1405773315 825 dbSNP
rs959395878 840 dbSNP
rs781749040 846 dbSNP
rs1338433810 854 dbSNP
rs1348560092 854 dbSNP
rs1223300894 863 dbSNP
rs746387800 864 dbSNP
rs149320498 865 dbSNP
rs1317471539 867 dbSNP
rs144701094 874 dbSNP
rs1289288354 878 dbSNP
rs1332487182 878 dbSNP
rs946425461 880 dbSNP
rs542857447 881 dbSNP
rs1170508162 893 dbSNP
rs1477147316 894 dbSNP
rs1042089237 896 dbSNP
rs923602020 899 dbSNP
rs1475480999 907 dbSNP
rs1236534268 908 dbSNP
rs1462445329 913 dbSNP
rs1199618336 920 dbSNP
rs978623710 923 dbSNP
rs924408903 936 dbSNP
rs80218141 939 dbSNP
rs1316009422 942 dbSNP
rs1297693630 945 dbSNP
rs1176147540 950 dbSNP
rs1378620727 960 dbSNP
rs1056383701 961 dbSNP
rs895037496 972 dbSNP
rs1051972581 975 dbSNP
rs377302559 976 dbSNP
rs1365323026 982 dbSNP
rs1464437520 984 dbSNP
rs1356757829 991 dbSNP
rs888544676 995 dbSNP
rs1410030483 1002 dbSNP
rs116026407 1006 dbSNP
rs1015586839 1008 dbSNP
rs1038716622 1013 dbSNP
rs899418029 1016 dbSNP
rs540499656 1018 dbSNP
rs995469855 1020 dbSNP
rs998421353 1027 dbSNP
rs1334237363 1037 dbSNP
rs1047910770 1038 dbSNP
rs544305189 1050 dbSNP
rs760157657 1056 dbSNP
rs1280188504 1057 dbSNP
rs765650697 1058 dbSNP
rs1248389168 1062 dbSNP
rs1003702838 1065 dbSNP
rs532414995 1066 dbSNP
rs1308856378 1075 dbSNP
rs1445025057 1077 dbSNP
rs985655698 1081 dbSNP
rs1299188213 1087 dbSNP
rs1348750105 1094 dbSNP
rs915388120 1094 dbSNP
rs1035104042 1096 dbSNP
rs563310227 1096 dbSNP
rs1242222817 1100 dbSNP
rs1289519873 1104 dbSNP
rs369292299 1114 dbSNP
rs1385434465 1115 dbSNP
rs959448203 1116 dbSNP
rs1012208236 1118 dbSNP
rs1252419497 1125 dbSNP
rs550909618 1133 dbSNP
rs1291519458 1134 dbSNP
rs923633234 1135 dbSNP
rs1224779075 1137 dbSNP
rs1022221204 1139 dbSNP
rs1285566671 1143 dbSNP
rs1435689850 1150 dbSNP
rs1237178719 1157 dbSNP
rs116335361 1158 dbSNP
rs1308196515 1162 dbSNP
rs1386652380 1172 dbSNP
rs753188945 1175 dbSNP
rs1366081844 1181 dbSNP
rs143374092 1183 dbSNP
rs879220525 1183 dbSNP
rs1406240048 1185 dbSNP
rs979061608 1188 dbSNP
rs1031568191 1189 dbSNP
rs1297134954 1191 dbSNP
rs1451180711 1197 dbSNP
rs956094088 1197 dbSNP
rs552272261 1199 dbSNP
rs548444587 1201 dbSNP
rs1385167879 1207 dbSNP
rs1427109880 1212 dbSNP
rs1048919689 1217 dbSNP
rs1490518345 1227 dbSNP
rs575412065 1227 dbSNP
rs1262580773 1230 dbSNP
rs1445581280 1232 dbSNP
rs3291 1236 dbSNP
rs534108987 1246 dbSNP
rs1005657156 1247 dbSNP
rs1037064229 1257 dbSNP
rs897216513 1264 dbSNP
rs558914251 1265 dbSNP
rs920234598 1267 dbSNP
rs570692098 1268 dbSNP
rs1285734490 1270 dbSNP
rs930308619 1281 dbSNP
rs1409574891 1284 dbSNP
rs537454707 1285 dbSNP
rs886687802 1298 dbSNP
rs1294267826 1300 dbSNP
rs939556075 1301 dbSNP
rs954354913 1303 dbSNP
rs143787871 1306 dbSNP
rs17117651 1310 dbSNP
rs772170867 1328 dbSNP
rs764075652 1334 dbSNP
rs1403655649 1341 dbSNP
rs1022268637 1342 dbSNP
rs1480743293 1351 dbSNP
rs978258360 1366 dbSNP
rs116090714 1370 dbSNP
rs554766838 1374 dbSNP
rs573119285 1375 dbSNP
rs1262686400 1377 dbSNP
rs1200151003 1387 dbSNP
rs1460212818 1388 dbSNP
rs1265390473 1393 dbSNP
rs1285696850 1396 dbSNP
rs1032038818 1404 dbSNP
rs1317822633 1405 dbSNP
rs1250168867 1406 dbSNP
rs1224610464 1415 dbSNP
rs1213610892 1424 dbSNP
rs1295778422 1426 dbSNP
rs147275192 1430 dbSNP
rs916240861 1431 dbSNP
rs200554893 1432 dbSNP
rs538854251 1432 dbSNP
rs547276122 1432 dbSNP
rs1458667482 1438 dbSNP
rs565243398 1440 dbSNP
rs1166154857 1443 dbSNP
rs1463575880 1473 dbSNP
rs1373730593 1478 dbSNP
rs987304759 1488 dbSNP
rs985093694 1489 dbSNP
rs577427892 1492 dbSNP
rs964474993 1493 dbSNP
rs974514507 1507 dbSNP
rs920345434 1509 dbSNP
rs544322655 1510 dbSNP
rs1271489781 1514 dbSNP
rs930340832 1524 dbSNP
rs562899455 1525 dbSNP
rs760674779 1533 dbSNP
rs780640486 1537 dbSNP
rs1316759981 1541 dbSNP
rs1051085657 1554 dbSNP
rs1335006802 1557 dbSNP
rs1426085185 1569 dbSNP
rs1468253448 1571 dbSNP
rs1056573788 1572 dbSNP
rs1397253074 1575 dbSNP
rs530164583 1576 dbSNP
rs1429661092 1583 dbSNP
rs1387308703 1584 dbSNP
rs948203482 1586 dbSNP
rs1043817158 1591 dbSNP
rs903928098 1595 dbSNP
rs1438926218 1597 dbSNP
rs999973760 1600 dbSNP
rs117909175 1605 dbSNP
rs1489674214 1611 dbSNP
rs1031138303 1612 dbSNP
rs1246271228 1618 dbSNP
rs1349599225 1622 dbSNP
rs1429778801 1627 dbSNP
rs1241035686 1641 dbSNP
rs1336255848 1650 dbSNP
rs891715613 1657 dbSNP
rs1302545323 1660 dbSNP
rs74060934 1661 dbSNP
rs1319588833 1663 dbSNP
rs1018855357 1667 dbSNP
rs1400378664 1669 dbSNP
rs1261932334 1677 dbSNP
rs1470742441 1679 dbSNP
rs1345195586 1684 dbSNP
rs561263887 1695 dbSNP
rs996001721 1696 dbSNP
rs779935556 1697 dbSNP
rs951789063 1698 dbSNP
rs1206670433 1704 dbSNP
rs969446422 1705 dbSNP
rs568725643 1710 dbSNP
rs1215479425 1715 dbSNP
rs984444919 1718 dbSNP
rs573454120 1720 dbSNP
rs536063118 1723 dbSNP
rs1430169618 1727 dbSNP
rs907504371 1738 dbSNP
rs940585437 1739 dbSNP
rs188312323 1745 dbSNP
rs934102043 1764 dbSNP
rs1051115228 1765 dbSNP
rs1481722396 1768 dbSNP
rs889850278 1769 dbSNP
rs538132394 1771 dbSNP
rs992395384 1774 dbSNP
rs916820122 1794 dbSNP
rs1194898365 1805 dbSNP
rs764932842 1820 dbSNP
rs1262314014 1830 dbSNP
rs1201641085 1832 dbSNP
rs1174180620 1833 dbSNP
rs999768408 1848 dbSNP
rs1043898927 1852 dbSNP
rs1214062903 1855 dbSNP
rs896635766 1860 dbSNP
rs61114284 1862 dbSNP
rs568023968 1865 dbSNP
rs969140843 1869 dbSNP
rs984866575 1874 dbSNP
rs1170432529 1877 dbSNP
rs535051305 1878 dbSNP
rs1416780072 1884 dbSNP
rs112566806 1890 dbSNP
rs1449725295 1893 dbSNP
rs1242203604 1899 dbSNP
rs1052877463 1906 dbSNP
rs1234820242 1907 dbSNP
rs891151310 1908 dbSNP
rs778722877 1912 dbSNP
rs1218037190 1915 dbSNP
rs1305769173 1922 dbSNP
rs571763944 1925 dbSNP
rs1288592845 1938 dbSNP
rs762482809 1951 dbSNP
rs74060936 1954 dbSNP
rs923137904 1959 dbSNP
rs900416142 1963 dbSNP
rs996011605 1990 dbSNP
rs1298040835 1992 dbSNP
rs1440692423 2001 dbSNP
rs985905888 2002 dbSNP
rs1027454263 2003 dbSNP
rs1429882433 2014 dbSNP
rs1179781062 2022 dbSNP
rs1384221568 2023 dbSNP
rs559098527 2024 dbSNP
rs772304948 2025 dbSNP
rs1446166217 2038 dbSNP
rs1363350824 2040 dbSNP
rs1176509107 2045 dbSNP
rs577513975 2052 dbSNP
rs1479629180 2059 dbSNP
rs1234578293 2060 dbSNP
rs1004609757 2062 dbSNP
rs750190698 2062 dbSNP
rs1015072207 2063 dbSNP
rs960392887 2065 dbSNP
rs1248451571 2069 dbSNP
rs1360569484 2075 dbSNP
rs1222475548 2076 dbSNP
rs925303417 2089 dbSNP
rs1299314555 2098 dbSNP
rs991780277 2109 dbSNP
rs916870939 2112 dbSNP
rs1391028518 2113 dbSNP
rs935591232 2114 dbSNP
rs544868566 2116 dbSNP
rs1368777235 2119 dbSNP
rs1158074697 2139 dbSNP
rs1417122923 2148 dbSNP
rs540270593 2153 dbSNP
rs896709386 2159 dbSNP
rs1480112730 2161 dbSNP
rs925446303 2165 dbSNP
rs1488915663 2173 dbSNP
rs1260400303 2203 dbSNP
rs1013780050 2204 dbSNP
rs1214081296 2205 dbSNP
rs935432908 2207 dbSNP
rs180823852 2209 dbSNP
rs1479964530 2216 dbSNP
rs904974898 2222 dbSNP
rs912643385 2226 dbSNP
rs574901988 2230 dbSNP
rs1280839938 2232 dbSNP
rs944059039 2234 dbSNP
rs1390966964 2247 dbSNP
rs1287993531 2250 dbSNP
rs1039686574 2251 dbSNP
rs1005967728 2253 dbSNP
rs1357653292 2257 dbSNP
rs1469248510 2261 dbSNP
rs140779196 2269 dbSNP
rs1266213931 2271 dbSNP
rs1261276272 2285 dbSNP
rs900425985 2291 dbSNP
rs1489577452 2297 dbSNP
rs1194337384 2301 dbSNP
rs1185008026 2305 dbSNP
rs1487017938 2306 dbSNP
rs1269200735 2313 dbSNP
rs961676217 2314 dbSNP
rs993096774 2315 dbSNP
rs1265585769 2316 dbSNP
rs1234778086 2318 dbSNP
rs1030225865 2319 dbSNP
rs1249910214 2323 dbSNP
rs569647971 2326 dbSNP
rs1380199754 2329 dbSNP
rs986378845 2347 dbSNP
rs1320952538 2348 dbSNP
rs1179115864 2355 dbSNP
rs1451699416 2356 dbSNP
rs560571349 2363 dbSNP
rs1178567661 2367 dbSNP
rs537825127 2369 dbSNP
rs1466561203 2370 dbSNP
rs1049384676 2384 dbSNP
rs144844055 2386 dbSNP
rs545135746 2387 dbSNP
rs1248936775 2391 dbSNP
rs979521431 2398 dbSNP
rs184883241 2406 dbSNP
rs114964711 2417 dbSNP
rs1201545042 2435 dbSNP
rs1013208867 2436 dbSNP
rs1296146663 2437 dbSNP
rs1052410933 2438 dbSNP
rs1395066835 2447 dbSNP
rs1224672104 2457 dbSNP
rs918175915 2463 dbSNP
rs1023224590 2470 dbSNP
rs550031427 2475 dbSNP
rs949581612 2478 dbSNP
rs1297959919 2482 dbSNP
rs116588005 2484 dbSNP
rs1380320244 2488 dbSNP
rs535087049 2489 dbSNP
rs1396573001 2494 dbSNP
rs373434782 2501 dbSNP
rs1213972044 2502 dbSNP
rs1006413181 2503 dbSNP
rs780255054 2510 dbSNP
rs897557460 2511 dbSNP
rs1029921551 2515 dbSNP
rs1443102890 2517 dbSNP
rs546949968 2519 dbSNP
rs1250982963 2527 dbSNP
rs956927568 2535 dbSNP
rs150872066 2538 dbSNP
rs189777121 2540 dbSNP
rs139428116 2541 dbSNP
rs1241411739 2550 dbSNP
rs944068807 2554 dbSNP
rs968567142 2555 dbSNP
rs975421858 2557 dbSNP
rs532196175 2559 dbSNP
rs1245311846 2560 dbSNP
rs1285761242 2560 dbSNP
rs1335068638 2564 dbSNP
rs931286330 2567 dbSNP
rs181142268 2578 dbSNP
rs1167793849 2584 dbSNP
rs771055008 2585 dbSNP
rs577354102 2587 dbSNP
rs777114388 2588 dbSNP
rs1465643158 2595 dbSNP
rs1032445953 2609 dbSNP
rs1422999557 2610 dbSNP
rs1393206531 2611 dbSNP
rs1164166542 2612 dbSNP
rs956735740 2618 dbSNP
rs887686142 2620 dbSNP
rs1172167698 2632 dbSNP
rs1473246953 2638 dbSNP
rs759833411 2644 dbSNP
rs1452547633 2649 dbSNP
rs917921878 2651 dbSNP
rs949693405 2657 dbSNP
rs187042917 2670 dbSNP
rs1291633885 2672 dbSNP
rs191382008 2678 dbSNP
rs181958588 2679 dbSNP
rs1277642385 2688 dbSNP
rs1380891438 2689 dbSNP
rs565660302 2690 dbSNP
rs1282700808 2718 dbSNP
rs1403224640 2724 dbSNP
rs1333041015 2732 dbSNP
rs1318840798 2738 dbSNP
rs3832970 2739 dbSNP
rs398070534 2739 dbSNP
rs71888108 2740 dbSNP
rs763401303 2741 dbSNP
rs896249490 2742 dbSNP
rs71448397 2744 dbSNP
rs542252329 2753 dbSNP
rs1198992532 2765 dbSNP
rs1161948718 2766 dbSNP
rs1209266414 2794 dbSNP
rs1237990845 2799 dbSNP
rs1484088463 2800 dbSNP
rs1429267148 2808 dbSNP
rs1184583168 2812 dbSNP
rs554197372 2831 dbSNP
rs897588753 2832 dbSNP
rs1262269414 2834 dbSNP
rs150058619 2835 dbSNP
rs904892065 2843 dbSNP
rs1446146916 2849 dbSNP
rs929052467 2858 dbSNP
rs548600089 2862 dbSNP
rs564157322 2870 dbSNP
rs1262504638 2873 dbSNP
rs531558866 2881 dbSNP
rs1347230810 2887 dbSNP
rs1413428531 2890 dbSNP
rs1032634586 2892 dbSNP
rs1275591094 2897 dbSNP
rs1430313202 2907 dbSNP
rs186418760 2908 dbSNP
rs988334173 2922 dbSNP
rs1436337432 2924 dbSNP
rs3742843 2929 dbSNP
rs777968740 2930 dbSNP
rs1412212547 2935 dbSNP
rs1426673747 2937 dbSNP
rs975516116 2938 dbSNP
rs529143491 2945 dbSNP
rs746889309 2950 dbSNP
rs1245856663 2952 dbSNP
rs1000034592 2957 dbSNP
rs1465225297 2964 dbSNP
rs1031474579 2969 dbSNP
rs1201691960 2977 dbSNP
rs1313982078 2984 dbSNP
rs956809318 2985 dbSNP
rs988205844 2989 dbSNP
rs1337665470 2990 dbSNP
rs1300184804 3000 dbSNP
rs547038175 3012 dbSNP
rs116420099 3015 dbSNP
rs879491592 3016 dbSNP
rs140460180 3026 dbSNP
rs398118359 3026 dbSNP
rs1313858416 3032 dbSNP
rs926899849 3034 dbSNP
rs1285040418 3049 dbSNP
rs942244339 3050 dbSNP
rs765932300 3051 dbSNP
rs1170106903 3056 dbSNP
rs558477095 3056 dbSNP
rs770949461 3063 dbSNP
rs919420682 3064 dbSNP
rs1036166882 3066 dbSNP
rs1051445538 3070 dbSNP
rs1238024618 3071 dbSNP
rs1203913447 3075 dbSNP
rs1482149836 3078 dbSNP
rs1276972132 3080 dbSNP
rs532897976 3083 dbSNP
rs1206144943 3085 dbSNP
rs1359123251 3086 dbSNP
rs1266340825 3096 dbSNP
rs949203320 3097 dbSNP
rs1044826301 3099 dbSNP
rs904937284 3100 dbSNP
rs776453367 3109 dbSNP
rs34741795 3114 dbSNP
rs1368167135 3115 dbSNP
rs548253806 3116 dbSNP
rs145482945 3117 dbSNP
rs1364621623 3119 dbSNP
rs1000513318 3130 dbSNP
rs1158630302 3133 dbSNP
rs759334229 3134 dbSNP
rs1031532121 3135 dbSNP
rs778586826 3152 dbSNP
rs201284613 3155 dbSNP
rs769713296 3156 dbSNP
rs1010208394 3157 dbSNP
rs775223087 3163 dbSNP
rs140235408 3164 dbSNP
rs1263942906 3168 dbSNP
rs371406838 3168 dbSNP
rs1322709227 3169 dbSNP
rs190043887 3178 dbSNP
rs1284100028 3184 dbSNP
rs1222590441 3187 dbSNP
rs762747869 3205 dbSNP
rs536151715 3211 dbSNP
rs369838362 3229 dbSNP
rs554234180 3253 dbSNP
rs1344475157 3256 dbSNP
rs570535032 3262 dbSNP
rs1221992488 3263 dbSNP
rs572453703 3267 dbSNP
rs143959737 3268 dbSNP
rs963704747 3270 dbSNP
rs984148754 3272 dbSNP
rs973604976 3274 dbSNP
rs919453211 3278 dbSNP
rs1182951139 3281 dbSNP
rs763689463 3285 dbSNP
rs372413993 3297 dbSNP
rs1265459965 3305 dbSNP
rs1289083210 3307 dbSNP
rs1193143575 3311 dbSNP
rs1488988131 3319 dbSNP
rs987575124 3322 dbSNP
rs911646827 3340 dbSNP
rs1331796508 3345 dbSNP
rs751124549 3348 dbSNP
rs761069417 3353 dbSNP
rs1298660243 3358 dbSNP
rs943077294 3361 dbSNP
rs1038730536 3364 dbSNP
rs925606450 3366 dbSNP
rs1390741797 3370 dbSNP
rs146460634 3374 dbSNP
rs1159829346 3376 dbSNP
rs1469295418 3382 dbSNP
rs949259655 3388 dbSNP
rs1376026806 3391 dbSNP
rs537915672 3392 dbSNP
rs1433957304 3398 dbSNP
rs1261344591 3406 dbSNP
rs576421280 3407 dbSNP
rs1187057136 3408 dbSNP
rs1441876315 3424 dbSNP
rs1162031002 3427 dbSNP
rs543644790 3430 dbSNP
rs114180689 3432 dbSNP
rs754336282 3435 dbSNP
rs1014100377 3436 dbSNP
rs892148326 3450 dbSNP
rs1296504762 3451 dbSNP
rs144818437 3454 dbSNP
rs1367097545 3459 dbSNP
rs1041356264 3463 dbSNP
rs1321095175 3469 dbSNP
rs901424999 3482 dbSNP
rs1395406145 3484 dbSNP
rs1400038052 3487 dbSNP
rs1304624619 3497 dbSNP
rs182197516 3500 dbSNP
rs199527770 3500 dbSNP
rs1028877644 3501 dbSNP
rs1033711589 3503 dbSNP
rs952841910 3505 dbSNP
rs1183469551 3506 dbSNP
rs1422559746 3507 dbSNP
rs1282184613 3508 dbSNP
rs1258926370 3519 dbSNP
rs1006027230 3520 dbSNP
rs560865419 3529 dbSNP
rs60376099 3537 dbSNP
rs961705782 3539 dbSNP
rs1202625786 3542 dbSNP
rs1291579074 3562 dbSNP
rs1298029222 3569 dbSNP
rs1435525751 3570 dbSNP
rs1243839902 3571 dbSNP
rs3742842 3576 dbSNP
rs551042973 3592 dbSNP
rs569741125 3593 dbSNP
rs778723200 3599 dbSNP
rs950928403 3600 dbSNP
rs1306369175 3602 dbSNP
rs777691561 3610 dbSNP
rs980585261 3611 dbSNP
rs1237252466 3612 dbSNP
rs1163303279 3616 dbSNP
rs912038708 3620 dbSNP
rs1473338403 3623 dbSNP
rs747060485 3631 dbSNP
rs1165150193 3632 dbSNP
rs1188858521 3635 dbSNP
rs1423847895 3641 dbSNP
rs964532682 3642 dbSNP
rs1465128877 3650 dbSNP
rs1171453488 3651 dbSNP
rs926423922 3657 dbSNP
rs936497697 3659 dbSNP
rs1274984591 3660 dbSNP
rs974885187 3674 dbSNP
rs1354007380 3691 dbSNP
rs925697226 3695 dbSNP
rs1272570707 3703 dbSNP
rs1053971926 3704 dbSNP
rs1349899947 3725 dbSNP
rs373172163 3733 dbSNP
rs370268232 3738 dbSNP
rs1411790616 3745 dbSNP
rs188122610 3752 dbSNP
rs945065704 3766 dbSNP
rs148244770 3767 dbSNP
rs568646275 3768 dbSNP
rs949941557 3770 dbSNP
rs1410445877 3771 dbSNP
rs901434659 3777 dbSNP
rs75677669 3778 dbSNP
rs1197734372 3780 dbSNP
rs1449618054 3785 dbSNP
rs1049943998 3789 dbSNP
rs1002319543 3795 dbSNP
rs563100933 3796 dbSNP
rs1328350624 3800 dbSNP
rs796747899 3803 dbSNP
rs548122950 3807 dbSNP
rs1329950849 3820 dbSNP
rs542852649 3823 dbSNP
rs539832991 3824 dbSNP
rs899231022 3832 dbSNP
rs1258136558 3840 dbSNP
rs557860507 3848 dbSNP
rs1016128256 3861 dbSNP
rs897206522 3864 dbSNP
rs1458295507 3870 dbSNP
rs576529833 3874 dbSNP
rs1319460335 3876 dbSNP
rs886725203 3883 dbSNP
rs1379054128 3886 dbSNP
rs1199299091 3887 dbSNP
rs1009560896 3888 dbSNP
rs1019135133 3899 dbSNP
rs1278541651 3901 dbSNP
rs1465362952 3909 dbSNP
rs537129309 3912 dbSNP
rs554557490 3917 dbSNP
rs770946531 3919 dbSNP
rs1014216938 3920 dbSNP
rs1190080412 3929 dbSNP
rs1285273241 3930 dbSNP
rs573132391 3932 dbSNP
rs1323094189 3935 dbSNP
rs1024230064 3936 dbSNP
rs970637030 3939 dbSNP
rs957073304 3946 dbSNP
rs1477602331 3956 dbSNP
rs1194744235 3958 dbSNP
rs981118901 3960 dbSNP
rs988508534 3970 dbSNP
rs200971231 3986 dbSNP
rs1468300218 3992 dbSNP
rs555177978 3996 dbSNP
rs573517175 4004 dbSNP
rs1448581689 4006 dbSNP
rs191486377 4012 dbSNP
rs1190326720 4013 dbSNP
rs140418658 4015 dbSNP
rs1236901076 4027 dbSNP
rs1208090553 4043 dbSNP
rs74060938 4045 dbSNP
rs927205689 4049 dbSNP
rs1204739360 4053 dbSNP
rs545027987 4060 dbSNP
rs1300246343 4062 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gggugggccCCCGGCGAGGGGu 5'
                   || || |||||| 
Target 5' -------uuGGCCCUCUCCCCa 3'
 		1 - 15
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000553530.1 | 3UTR | UUGGCCCUCUCCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
129 hsa-miR-1343-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT168710 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT189773 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT443841 RGS6 regulator of G protein signaling 6 2 2
MIRT446199 GTPBP4 GTP binding protein 4 2 2
MIRT448038 SFRP1 secreted frizzled related protein 1 2 2
MIRT451305 LGALS3BP galectin 3 binding protein 2 2
MIRT452320 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT453238 FTSJ3 FtsJ RNA methyltransferase homolog 3 2 2
MIRT453500 ARRB1 arrestin beta 1 2 2
MIRT453540 PRR12 proline rich 12 2 2
MIRT454900 SEPT8 septin 8 2 16
MIRT456443 TMEM81 transmembrane protein 81 2 2
MIRT456683 LDB1 LIM domain binding 1 2 2
MIRT457129 ASPH aspartate beta-hydroxylase 2 2
MIRT457178 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT457598 IDS iduronate 2-sulfatase 2 2
MIRT458304 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458442 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT460645 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461455 SLC19A3 solute carrier family 19 member 3 2 2
MIRT462768 ZNF8 zinc finger protein 8 2 2
MIRT462990 ZNF740 zinc finger protein 740 2 2
MIRT463679 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT464111 VPS35 VPS35, retromer complex component 2 2
MIRT464413 UNC13A unc-13 homolog A 2 6
MIRT468614 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT469603 RALGAPA2 Ral GTPase activating protein catalytic alpha subunit 2 2 2
MIRT469654 RAC1 Rac family small GTPase 1 2 2
MIRT473288 MFRP membrane frizzled-related protein 2 2
MIRT473603 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT473660 MARCKSL1 MARCKS like 1 2 2
MIRT474692 KIF5A kinesin family member 5A 2 2
MIRT475661 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT477623 EFNA1 ephrin A1 2 2
MIRT478124 DIRAS1 DIRAS family GTPase 1 2 2
MIRT478440 DAZAP2 DAZ associated protein 2 2 4
MIRT478949 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT479970 CARD10 caspase recruitment domain family member 10 2 2
MIRT480401 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT482808 TRAF6 TNF receptor associated factor 6 2 2
MIRT482944 ZNF561 zinc finger protein 561 2 6
MIRT483652 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT485375 MSN moesin 2 4
MIRT485762 B4GALT5 beta-1,4-galactosyltransferase 5 2 2
MIRT485924 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT486241 FASTK Fas activated serine/threonine kinase 2 2
MIRT486845 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT486932 DTX2 deltex E3 ubiquitin ligase 2 2 2
MIRT487111 SCARF2 scavenger receptor class F member 2 2 2
MIRT487184 NFASC neurofascin 2 4
MIRT487209 HMX1 H6 family homeobox 1 2 2
MIRT487319 UBFD1 ubiquitin family domain containing 1 2 4
MIRT487810 PER3 period circadian clock 3 2 2
MIRT487829 CLSTN1 calsyntenin 1 2 4
MIRT488185 MAT1A methionine adenosyltransferase 1A 2 2
MIRT488638 HAND2 heart and neural crest derivatives expressed 2 2 2
MIRT488845 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489102 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT489222 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489355 SYNGR1 synaptogyrin 1 2 4
MIRT489730 GNAI2 G protein subunit alpha i2 2 4
MIRT489771 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490574 SLC47A1 solute carrier family 47 member 1 2 2
MIRT490777 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491530 HDAC5 histone deacetylase 5 2 2
MIRT492277 SHISA6 shisa family member 6 2 4
MIRT492701 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT493312 LIMD2 LIM domain containing 2 2 2
MIRT493542 ICOSLG inducible T-cell costimulator ligand 2 4
MIRT494327 CASKIN1 CASK interacting protein 1 2 2
MIRT494829 ADCY9 adenylate cyclase 9 2 2
MIRT496770 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 2 2
MIRT496972 RPS6KA2 ribosomal protein S6 kinase A2 2 2
MIRT497037 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B 2 2
MIRT498912 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT500013 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT502229 HOXC6 homeobox C6 2 2
MIRT504106 FLOT1 flotillin 1 2 2
MIRT506429 NAGK N-acetylglucosamine kinase 2 6
MIRT507335 FAM168A family with sequence similarity 168 member A 2 2
MIRT507780 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT510061 C12orf49 chromosome 12 open reading frame 49 2 4
MIRT511184 MAPRE1 microtubule associated protein RP/EB family member 1 2 2
MIRT511934 FAM127B retrotransposon Gag like 8A 2 2
MIRT513517 YIPF4 Yip1 domain family member 4 2 6
MIRT527161 ADRA2B adrenoceptor alpha 2B 2 2
MIRT535349 PFN1 profilin 1 2 2
MIRT536733 IER5 immediate early response 5 2 4
MIRT539178 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT544642 PHF8 PHD finger protein 8 2 4
MIRT553367 TRIM44 tripartite motif containing 44 2 2
MIRT568466 ARMC12 armadillo repeat containing 12 2 2
MIRT568970 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569008 CXorf36 chromosome X open reading frame 36 2 2
MIRT569036 IL21R interleukin 21 receptor 2 2
MIRT569720 GPR173 G protein-coupled receptor 173 2 2
MIRT569866 KLK10 kallikrein related peptidase 10 2 2
MIRT569913 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570011 COL1A2 collagen type I alpha 2 chain 2 2
MIRT570059 CPNE2 copine 2 2 2
MIRT570306 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT570724 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 2 2
MIRT570981 RGS19 regulator of G protein signaling 19 2 2
MIRT571195 C9orf62 chromosome 9 open reading frame 62 2 2
MIRT572264 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT573214 NAT10 N-acetyltransferase 10 2 2
MIRT574022 RIMBP3C RIMS binding protein 3C 2 2
MIRT574393 TMEM109 transmembrane protein 109 2 2
MIRT574632 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT574689 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT621600 USF2 upstream transcription factor 2, c-fos interacting 2 2
MIRT631302 CBS cystathionine-beta-synthase 2 2
MIRT647749 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT649338 HEXA hexosaminidase subunit alpha 2 2
MIRT649993 MSI1 musashi RNA binding protein 1 2 2
MIRT661785 NLRC3 NLR family CARD domain containing 3 2 2
MIRT665991 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT667176 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667385 MOB1B MOB kinase activator 1B 2 2
MIRT669206 CBX8 chromobox 8 2 2
MIRT680928 EVC EvC ciliary complex subunit 1 2 2
MIRT691869 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT693257 HBS1L HBS1 like translational GTPase 2 2
MIRT693489 MOB3A MOB kinase activator 3A 2 2
MIRT699480 SLC10A6 solute carrier family 10 member 6 2 2
MIRT717096 PXDC1 PX domain containing 1 2 2
MIRT717121 SOWAHA sosondowah ankyrin repeat domain family member A 2 2
MIRT717642 HLX H2.0 like homeobox 2 2
MIRT722584 THBS2 thrombospondin 2 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-1343 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-1343 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-miR-1343-5p Dabrafenib 44462760 NSC764134 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1343-5p Vemurafenib 42611257 NSC761431 approved resistant High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-1343-5p Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (A549)
hsa-miR-1343-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-1343-5p Gefitinib 123631 NSC715055 approved resistant cell line (PC9)
hsa-miR-1343-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-1343-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-1343-5p Cisplatin 5460033 NSC119875 approved sensitive cell line
hsa-miR-1343-5p Doxorubicin 31703 NSC123127 approved resistant cell line (BAS)
hsa-miR-1343-5p Doxorubicin 31703 NSC123127 approved resistant cell line (HS578T)

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