miRTarBase - #MIRT443866


—
pre-miRNA Information
pre-miRNA hsa-mir-4753   
Genomic Coordinates chr1: 235190034 - 235190116
Description Homo sapiens miR-4753 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4753-5p
Sequence 10| CAAGGCCAAAGGAAGAGAACAG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs547986869 3 dbSNP
rs1007787337 7 dbSNP
rs1224263160 12 dbSNP
rs1256249071 13 dbSNP
rs1484015538 14 dbSNP
rs535678819 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol HDLBP   
Synonyms HBP, PRO2900, VGL
Description high density lipoprotein binding protein
Transcript NM_005336   
Other Transcripts NM_203346   
Expression
Putative miRNA Targets on HDLBP
3'UTR of HDLBP
(miRNA target sites are highlighted)		 
>HDLBP|NM_005336|3'UTR
   1 TGATCAAAAAGAACAGAACCCTCTCCAGCCTGCTGACCCAAACCCAACCACACAATGGTTTGTCTCAATCTGACCCAGCG
  81 GCTGGACCCTCCGTAAATTGTTGACGCTCTTCCCCCTTCCCGAGGTCCCGCAGGGAGCCTAGCGCCTGGCTGTGTGTGCG
 161 GCCGCTCCTCCAGGCCTGGCCGTGCCCGCTCAGGACCTGCTCCACTGTTTAACACTAAACCAAGGTCATGAGCATTCGTG
 241 CTAAGATAACAGACTCCAGCTCCTGGTCCACCCGGCATGTCAGTCAGCACTCTGGCCTTCATCACGAGAGCTCCGCAGCC
 321 GTGGCTAGGATTCCACTTCCTGTGTCATGACCTCAGGAAATAAACGTCCTTGACTTTATAAAAGCCAAACGTTTGCCCTC
 401 TTCCTTTCCCACCTCCCTCCTGCCAGTTTCCCTTGGTCCAGACAGTCCTGTTTGTGGAGTGCAATCAGCCTCCTCCAGCT
 481 GCCAGAGCGCCTCAGCACAGGTGTCAGGGTGCAAGGAAGACCTGGCAATGGACAGCAGGAGGCAGGTTCCTGGAGCTGGG
 561 GGGTGACCTGAGAGGCAGAGGGTGACGGGTTCTCAGGCAGTCCTGATTTTACCTGCCGTGGGGTCTGAAAGCACCAAGGG
 641 TCCCTGCCCCTACCTCCACTGCCAGACCCTCAGCCTGAGGTCTGGTGAGTGGAGCCTGGAGGCAAGGTGGTAGGCACCAT
 721 CTGGGTCCCCTGTGGCCGTCACAGTGTCTGCTGTGATTGAGATGCGCACAGGTTGGGGGAGGTAGGGCCTTACGCTTGTC
 801 CTCAGTGGGGGCAGTTTGCCTTAGATGACAGCTGGGCTCTTCTTCACACCACCTGCAGCCCCTCCCTGCCCCTGCCCTAG
 881 CTGCTGTGTGTTCAGTTGCCTTCTTTCTACCTCAGCCGGCGTGGAGTGGTCTCTGTGCAGTTAGTGCCACCCCACACACC
 961 CGTCTCTTGATTGAGATGTTTCTGGTGGTTATGGGTTTCCCGTGGAGCTGGGGGTGGGCGCCGTGTACCTAAGCTGGAGG
1041 CTGGCGCTCTCCCTCAGCACAGGTGGGTCAGTGGCCAGCAGGCCCATCTGGAGTGGGAGTGGGCACTTCCACCCCGCCCA
1121 CAGGCCATCCGGCTGTGCAGGCCAGCCCCTAGGAGCAGGTCCCGGGTGACTGGCAGTTTTCACGGTCTAGGGCCGAGACG
1201 ATGGCATGGGGCCTAGAGCATGAGGTAGAGCAGAATGCAGACCACGCCGCTGGATGCCGAGAGACCCTGCTCTCCGAGGG
1281 AGGCATCTGTGTCATGCTGTGAGGGCTGAGGACGGGGCCCTAGTCTCTGGTTTTCTGGTCTTAACATCCTTATCTGTGTC
1361 CGCCACGGAGGTGACTGAGCTGCTAGCGAGTTGTCCTGTCCCAGGTACTTGAGTTTTGGAAAAGCTGACTCACGCCCATC
1441 CATCTCACAGCCCTTCCCTGGGGACAGTCGCTTCCGCCTTGACACCTCACTCTCAGTTGAATAACTCAAGCTTGGTCATC
1521 TTCAGACTCGAATTCTTGAGTAGACCCAGACGGCTTAGCCCAAGTCTAGTTGCAGCTGCCTCGGCAAGTCCCCATTTGCT
1601 CAGGCAGCCCTGAATGGGCCTGTTTACAGGAATGGTAAATTGGGATTGGAAGGAATATAGCTTCCAGCTTCATAGGCTAG
1681 GGTGACCACGGCTTAGGAAACAGGGAAAGAAAGCAAGGCCCTTTTCCTGCCTTTCCCGGGATCTGTCTACTCCACCTCCA
1761 CGGGGGAGGCCAGTGGGGAAGGGCTGTCACCTCTTCCCCATCTGCATGAGTTCTGGAACTCTGTCCTGTTGGCTGCTTGC
1841 TTCCAGCTCCCCCCAATCTCCATCGCAGCGGGTTCCTCCTGTCTTTTCTACAGTGTCATAAAACATCCTGCCCCTACCCT
1921 CTCCCAAAGGTCAATTTTAATTCTCACCAAGTTTTGCACATCTCTGTATGTCGCTTGATGTCTTAGACGCGAGCCCTTTC
2001 CTAAACTGTTCAGCGCTCTCTTTTCCTTTGGGTGGTTGTTGCAAGGGTGATGACATGACTGTCCCCAGGCCTGTCTCCCT
2081 GAAGCGTCTGTGCTGTCAGGACAGCCCTGGGCAGAGATGAGGCAGGGGTGAGGCGTGCGTGTGCTTTTCCTCCTTGTTGG
2161 ATGTCTTCCATATCATCTGTTTCCATAGCTACAATCCATCCCTTGGCCTTAACTTTGGAATTTGGAGATTATATGCAAAC
2241 ATGTGTAAAGGCTCATGAATATGGATGACACTGGAATTTTATAAATTCTAAAATAAAACCCGAAACCAGATGTAGCATGC
2321 TGGGACTCATTTTGTCAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gacaAGAGAAGGAAACCGGAAc 5'
              || | ||| |||||||| 
Target 5' acaaTC-CATCCCTTGGCCTTa 3'
 2191 - 2211 161.00 -14.40
2 
miRNA  3' gacaagAGAAG-GAAACCGGAAc 5'
                ||  | || ||||||| 
Target 5' tgtcagTCAGCACTCTGGCCTTc 3'
 278 - 300 148.00 -11.40
3 
miRNA  3' gacaAGAGA--AGGAAACCGGAAc 5'
              |||||  |::| |||:||| 
Target 5' ctagTCTCTGGTTTTCTGGTCTTa 3'
 1320 - 1343 148.00 -13.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN31502711 7 COSMIC
COSN30506329 18 COSMIC
COSN16131409 23 COSMIC
COSN30473704 25 COSMIC
COSN18727316 40 COSMIC
COSN16131473 64 COSMIC
COSN30518335 66 COSMIC
COSN30709638 76 COSMIC
COSN166453 92 COSMIC
COSN31514547 93 COSMIC
COSN20074397 105 COSMIC
COSN30120058 106 COSMIC
COSN30542953 125 COSMIC
COSN26442480 159 COSMIC
COSN30093788 174 COSMIC
COSN30093707 179 COSMIC
COSN30168726 181 COSMIC
COSN26736718 230 COSMIC
COSN30162901 285 COSMIC
COSN31541594 390 COSMIC
COSN28741680 441 COSMIC
COSN31563824 479 COSMIC
COSN28687290 498 COSMIC
COSN31552327 586 COSMIC
COSN21626151 612 COSMIC
COSN22092605 1014 COSMIC
COSN31490526 1022 COSMIC
COSN20740555 1023 COSMIC
COSN31588519 1045 COSMIC
COSN31552498 1078 COSMIC
COSM9423884 1242 COSMIC
COSM4133719 1263 COSMIC
COSM9427542 1360 COSMIC
COSM5781622 1440 COSMIC
COSN15117679 1470 COSMIC
COSN22411812 1804 COSMIC
COSN31487586 1810 COSMIC
COSN32062434 1813 COSMIC
COSN32057261 1848 COSMIC
COSN22213566 1980 COSMIC
COSN30174323 1988 COSMIC
COSN31541056 2009 COSMIC
COSN31526786 2114 COSMIC
COSN31596898 2138 COSMIC
COSN30165203 2156 COSMIC
COSN32064410 2183 COSMIC
rs15129 40 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1327397098 5 dbSNP
rs775321848 11 dbSNP
rs769609365 13 dbSNP
rs759203821 14 dbSNP
rs776522556 15 dbSNP
rs1390314942 19 dbSNP
rs770709432 20 dbSNP
rs746964103 21 dbSNP
rs149764127 26 dbSNP
rs1189510584 30 dbSNP
rs2230360 36 dbSNP
rs1321434441 39 dbSNP
rs15129 40 dbSNP
rs1198454140 41 dbSNP
rs1409357069 46 dbSNP
rs372425746 47 dbSNP
rs749580078 48 dbSNP
rs78125729 49 dbSNP
rs1328546192 51 dbSNP
rs922964904 52 dbSNP
rs1478125723 53 dbSNP
rs565782985 54 dbSNP
rs749765552 64 dbSNP
rs956478120 68 dbSNP
rs916408331 71 dbSNP
rs990569933 75 dbSNP
rs116424429 79 dbSNP
rs978949931 80 dbSNP
rs1283969326 87 dbSNP
rs749400516 89 dbSNP
rs2305069 92 dbSNP
rs1023611892 93 dbSNP
rs967007685 98 dbSNP
rs1019841890 105 dbSNP
rs1008475240 106 dbSNP
rs1379080738 109 dbSNP
rs889996556 110 dbSNP
rs187635424 113 dbSNP
rs1292446576 114 dbSNP
rs1446929478 115 dbSNP
rs1213959694 119 dbSNP
rs1398865051 120 dbSNP
rs1167902482 121 dbSNP
rs1013187288 129 dbSNP
rs1028476560 130 dbSNP
rs11552802 133 dbSNP
rs1472413226 135 dbSNP
rs1182254507 139 dbSNP
rs1386815339 143 dbSNP
rs960276660 144 dbSNP
rs898544514 146 dbSNP
rs867709502 150 dbSNP
rs1037053111 157 dbSNP
rs1332243009 159 dbSNP
rs368742242 159 dbSNP
rs1035727022 160 dbSNP
rs1449337262 161 dbSNP
rs567881180 163 dbSNP
rs897935169 164 dbSNP
rs1037482242 167 dbSNP
rs1005980258 168 dbSNP
rs879839113 179 dbSNP
rs888967568 181 dbSNP
rs778085361 182 dbSNP
rs1289679155 184 dbSNP
rs1244202703 186 dbSNP
rs117069991 187 dbSNP
rs750465650 188 dbSNP
rs1310662513 189 dbSNP
rs1441800469 192 dbSNP
rs530682380 201 dbSNP
rs1244757979 202 dbSNP
rs916439537 203 dbSNP
rs1177766240 207 dbSNP
rs1381199050 208 dbSNP
rs1170919945 210 dbSNP
rs990601052 211 dbSNP
rs933259771 224 dbSNP
rs936448636 225 dbSNP
rs748274762 227 dbSNP
rs1295938224 228 dbSNP
rs139790495 232 dbSNP
rs147268261 238 dbSNP
rs1332433822 240 dbSNP
rs1377211726 243 dbSNP
rs925052665 246 dbSNP
rs966810847 250 dbSNP
rs1343593677 254 dbSNP
rs1219288103 256 dbSNP
rs1264998110 258 dbSNP
rs761631938 258 dbSNP
rs1456357771 260 dbSNP
rs1197837194 263 dbSNP
rs1238513939 269 dbSNP
rs1322693693 270 dbSNP
rs912227431 272 dbSNP
rs529747064 273 dbSNP
rs879768862 274 dbSNP
rs1159194251 278 dbSNP
rs954263205 288 dbSNP
rs1178675230 289 dbSNP
rs559417833 290 dbSNP
rs1028507888 293 dbSNP
rs947515663 294 dbSNP
rs1392783253 301 dbSNP
rs541010493 305 dbSNP
rs992119367 314 dbSNP
rs1436616255 315 dbSNP
rs1284625005 318 dbSNP
rs754974616 320 dbSNP
rs1016061084 321 dbSNP
rs1036080186 330 dbSNP
rs1478503903 334 dbSNP
rs1341142570 337 dbSNP
rs1207830968 338 dbSNP
rs1267022142 339 dbSNP
rs1004293316 365 dbSNP
rs1246381087 366 dbSNP
rs547760012 369 dbSNP
rs1261070580 371 dbSNP
rs972065739 378 dbSNP
rs1477782556 384 dbSNP
rs1171935800 389 dbSNP
rs962030893 390 dbSNP
rs1045691577 391 dbSNP
rs1220477724 398 dbSNP
rs1163002415 408 dbSNP
rs1489485293 411 dbSNP
rs565532026 419 dbSNP
rs774319983 420 dbSNP
rs543665403 429 dbSNP
rs751512245 431 dbSNP
rs895039980 438 dbSNP
rs1054987733 448 dbSNP
rs1296285627 458 dbSNP
rs1006264714 459 dbSNP
rs936465580 460 dbSNP
rs1315640244 463 dbSNP
rs1264585746 464 dbSNP
rs1357360516 469 dbSNP
rs1283989129 471 dbSNP
rs1488035527 485 dbSNP
rs888913728 486 dbSNP
rs562487526 488 dbSNP
rs1042568337 489 dbSNP
rs1422554839 494 dbSNP
rs62186361 498 dbSNP
rs1369376263 504 dbSNP
rs912258742 508 dbSNP
rs1165028260 513 dbSNP
rs1358218671 519 dbSNP
rs1060202 528 dbSNP
rs1052518625 530 dbSNP
rs1288912410 534 dbSNP
rs1387111891 535 dbSNP
rs377357115 535 dbSNP
rs1394175316 545 dbSNP
rs903541351 550 dbSNP
rs1383177579 557 dbSNP
rs527662907 564 dbSNP
rs1307427869 568 dbSNP
rs1298569335 571 dbSNP
rs543138653 572 dbSNP
rs145584288 576 dbSNP
rs1482582935 577 dbSNP
rs1200321904 579 dbSNP
rs1257323786 582 dbSNP
rs1343334164 584 dbSNP
rs974276056 586 dbSNP
rs963239424 587 dbSNP
rs1438673965 591 dbSNP
rs1159234141 594 dbSNP
rs764991827 596 dbSNP
rs916059217 597 dbSNP
rs991694189 600 dbSNP
rs1464494726 604 dbSNP
rs938917419 606 dbSNP
rs1015761976 610 dbSNP
rs1406721595 612 dbSNP
rs1433868863 613 dbSNP
rs796081951 617 dbSNP
rs769330159 618 dbSNP
rs1310461801 623 dbSNP
rs1232610586 624 dbSNP
rs1478920614 633 dbSNP
rs1012847789 634 dbSNP
rs895071298 635 dbSNP
rs972306473 644 dbSNP
rs1197200452 645 dbSNP
rs1055420913 647 dbSNP
rs1485199899 652 dbSNP
rs1000785020 656 dbSNP
rs553767446 657 dbSNP
rs538618074 673 dbSNP
rs570415334 678 dbSNP
rs1042208899 681 dbSNP
rs114165757 690 dbSNP
rs536935031 691 dbSNP
rs1360355807 694 dbSNP
rs953528451 699 dbSNP
rs932270734 708 dbSNP
rs1300180831 709 dbSNP
rs920931162 711 dbSNP
rs1386324561 712 dbSNP
rs974770165 714 dbSNP
rs1221368555 716 dbSNP
rs1341964994 720 dbSNP
rs941604306 730 dbSNP
rs908734149 731 dbSNP
rs140076981 737 dbSNP
rs548059476 738 dbSNP
rs1359542654 741 dbSNP
rs529829526 743 dbSNP
rs1487286011 744 dbSNP
rs901687525 744 dbSNP
rs1030901774 745 dbSNP
rs1481381791 746 dbSNP
rs1191347742 748 dbSNP
rs565744567 753 dbSNP
rs999449036 763 dbSNP
rs1466422683 764 dbSNP
rs903488759 765 dbSNP
rs183327770 766 dbSNP
rs1348407671 769 dbSNP
rs1467428341 773 dbSNP
rs947765578 775 dbSNP
rs1347408499 783 dbSNP
rs958735729 786 dbSNP
rs532106130 793 dbSNP
rs761250846 793 dbSNP
rs903738081 794 dbSNP
rs1258634146 813 dbSNP
rs1490714724 816 dbSNP
rs564865013 818 dbSNP
rs745427510 827 dbSNP
rs1021224591 838 dbSNP
rs1241489599 843 dbSNP
rs151064874 846 dbSNP
rs374440141 847 dbSNP
rs1411309486 857 dbSNP
rs1423472989 866 dbSNP
rs544144576 870 dbSNP
rs1164509622 872 dbSNP
rs1367678094 874 dbSNP
rs1242042063 877 dbSNP
rs1297629907 879 dbSNP
rs555082124 884 dbSNP
rs1201197137 885 dbSNP
rs890886714 887 dbSNP
rs1433451233 888 dbSNP
rs1050865645 890 dbSNP
rs928798097 895 dbSNP
rs536407615 897 dbSNP
rs1036539630 898 dbSNP
rs1038028081 901 dbSNP
rs941622583 902 dbSNP
rs1226164218 903 dbSNP
rs940979532 904 dbSNP
rs1305554579 907 dbSNP
rs147546104 909 dbSNP
rs1217776689 910 dbSNP
rs984780864 914 dbSNP
rs1235650924 915 dbSNP
rs1396598747 916 dbSNP
rs561565959 917 dbSNP
rs572604441 918 dbSNP
rs1449133977 920 dbSNP
rs761379019 921 dbSNP
rs1158097607 924 dbSNP
rs572228244 927 dbSNP
rs560164417 935 dbSNP
rs1402964089 936 dbSNP
rs1332839558 938 dbSNP
rs1359095422 938 dbSNP
rs1453892394 938 dbSNP
rs753469620 940 dbSNP
rs1237455731 941 dbSNP
rs757939489 943 dbSNP
rs1370628821 949 dbSNP
rs976593255 950 dbSNP
rs141579846 961 dbSNP
rs1033436996 962 dbSNP
rs760059671 962 dbSNP
rs1427714941 966 dbSNP
rs1204081166 975 dbSNP
rs999437615 977 dbSNP
rs773542080 979 dbSNP
rs1456611346 981 dbSNP
rs967979415 984 dbSNP
rs1181284534 987 dbSNP
rs968388307 992 dbSNP
rs1471239740 993 dbSNP
rs1020842292 1000 dbSNP
rs1429269405 1001 dbSNP
rs1423785051 1002 dbSNP
rs1179073584 1006 dbSNP
rs774923849 1012 dbSNP
rs1009474908 1014 dbSNP
rs1335948776 1020 dbSNP
rs1161743970 1021 dbSNP
rs1011884880 1022 dbSNP
rs894820493 1023 dbSNP
rs1458721673 1025 dbSNP
rs1223968426 1028 dbSNP
rs529387406 1038 dbSNP
rs1315895322 1039 dbSNP
rs867377238 1045 dbSNP
rs191018074 1046 dbSNP
rs1439758300 1048 dbSNP
rs1196879250 1051 dbSNP
rs1479444142 1053 dbSNP
rs1481053381 1056 dbSNP
rs1267049819 1059 dbSNP
rs1461831391 1060 dbSNP
rs907373110 1062 dbSNP
rs1036528242 1066 dbSNP
rs772653397 1071 dbSNP
rs374770614 1083 dbSNP
rs771157466 1094 dbSNP
rs577653292 1096 dbSNP
rs1405012384 1098 dbSNP
rs1049315540 1101 dbSNP
rs1285189803 1109 dbSNP
rs1226491891 1114 dbSNP
rs556280625 1115 dbSNP
rs921931887 1116 dbSNP
rs1047328798 1118 dbSNP
rs976160410 1119 dbSNP
rs950303628 1120 dbSNP
rs1490551261 1122 dbSNP
rs1377753507 1127 dbSNP
rs539335099 1130 dbSNP
rs923769098 1131 dbSNP
rs576240508 1133 dbSNP
rs1428390652 1134 dbSNP
rs1250022013 1135 dbSNP
rs1375071309 1137 dbSNP
rs1055857558 1139 dbSNP
rs571883189 1153 dbSNP
rs1364565641 1156 dbSNP
rs926037635 1163 dbSNP
rs1304411628 1164 dbSNP
rs536406413 1165 dbSNP
rs1381542563 1166 dbSNP
rs1277914032 1168 dbSNP
rs1318732494 1171 dbSNP
rs1022196143 1176 dbSNP
rs1259521098 1177 dbSNP
rs76969753 1183 dbSNP
rs959035114 1184 dbSNP
rs967433677 1186 dbSNP
rs1248288483 1189 dbSNP
rs913217764 1194 dbSNP
rs988096098 1195 dbSNP
rs1035131958 1199 dbSNP
rs74592012 1200 dbSNP
rs538734069 1204 dbSNP
rs1183337993 1207 dbSNP
rs1327316424 1211 dbSNP
rs1384280496 1216 dbSNP
rs1288026783 1218 dbSNP
rs1478313955 1219 dbSNP
rs896932246 1221 dbSNP
rs1361488444 1225 dbSNP
rs1452983940 1227 dbSNP
rs770094839 1228 dbSNP
rs1234279843 1230 dbSNP
rs571252393 1236 dbSNP
rs748221700 1242 dbSNP
rs996641941 1246 dbSNP
rs755274678 1248 dbSNP
rs964151934 1249 dbSNP
rs371260481 1258 dbSNP
rs1383839471 1259 dbSNP
rs1005698313 1260 dbSNP
rs528033648 1263 dbSNP
rs561396700 1264 dbSNP
rs1316468757 1265 dbSNP
rs1239852565 1267 dbSNP
rs1358035447 1272 dbSNP
rs1318375786 1275 dbSNP
rs185071438 1276 dbSNP
rs1203458522 1278 dbSNP
rs1244087705 1280 dbSNP
rs1461494445 1282 dbSNP
rs1184995154 1284 dbSNP
rs1247966632 1286 dbSNP
rs932235048 1288 dbSNP
rs1159159285 1291 dbSNP
rs1365485179 1294 dbSNP
rs527837684 1295 dbSNP
rs900494975 1297 dbSNP
rs896033766 1301 dbSNP
rs1055908459 1304 dbSNP
rs1040818673 1308 dbSNP
rs768728077 1313 dbSNP
rs567756519 1314 dbSNP
rs1309175322 1318 dbSNP
rs1475372869 1320 dbSNP
rs1043171681 1322 dbSNP
rs978188945 1325 dbSNP
rs1223359542 1327 dbSNP
rs183014750 1327 dbSNP
rs946120620 1340 dbSNP
rs1326173738 1347 dbSNP
rs1179995519 1349 dbSNP
rs1480077860 1355 dbSNP
rs1472444374 1356 dbSNP
rs545142279 1361 dbSNP
rs1251959707 1362 dbSNP
rs780390450 1367 dbSNP
rs116033831 1371 dbSNP
rs79035847 1375 dbSNP
rs1429900045 1378 dbSNP
rs12466277 1387 dbSNP
rs1168029065 1388 dbSNP
rs1462653546 1396 dbSNP
rs764728993 1401 dbSNP
rs922488721 1411 dbSNP
rs1214571679 1413 dbSNP
rs544244784 1419 dbSNP
rs975663790 1421 dbSNP
rs866365229 1426 dbSNP
rs1213231545 1427 dbSNP
rs1295251283 1432 dbSNP
rs746829172 1433 dbSNP
rs756257509 1433 dbSNP
rs1276319351 1434 dbSNP
rs1489675950 1434 dbSNP
rs1034672805 1439 dbSNP
rs758108556 1442 dbSNP
rs1005337679 1451 dbSNP
rs1184594428 1467 dbSNP
rs576306326 1469 dbSNP
rs527452609 1470 dbSNP
rs961041849 1471 dbSNP
rs1013852696 1475 dbSNP
rs1015274354 1476 dbSNP
rs536543067 1478 dbSNP
rs1288666144 1479 dbSNP
rs1363158730 1485 dbSNP
rs1005261994 1486 dbSNP
rs1299415784 1491 dbSNP
rs1034593829 1493 dbSNP
rs1244629785 1494 dbSNP
rs1291819958 1495 dbSNP
rs1002176290 1497 dbSNP
rs887914433 1501 dbSNP
rs1028273465 1505 dbSNP
rs750275395 1510 dbSNP
rs1486112986 1517 dbSNP
rs1283502918 1521 dbSNP
rs1203249378 1525 dbSNP
rs14345 1528 dbSNP
rs900776621 1529 dbSNP
rs560310191 1530 dbSNP
rs1164296165 1531 dbSNP
rs946160110 1536 dbSNP
rs944664356 1538 dbSNP
rs891846428 1545 dbSNP
rs553991219 1551 dbSNP
rs1042459842 1552 dbSNP
rs946816981 1553 dbSNP
rs1380165910 1555 dbSNP
rs1451378393 1564 dbSNP
rs915075463 1567 dbSNP
rs1357922644 1569 dbSNP
rs538775763 1572 dbSNP
rs1283529231 1573 dbSNP
rs1051784063 1580 dbSNP
rs1210383139 1581 dbSNP
rs933278605 1582 dbSNP
rs1461046021 1583 dbSNP
rs991083311 1584 dbSNP
rs1398238346 1591 dbSNP
rs1468704044 1594 dbSNP
rs937928454 1602 dbSNP
rs1403808477 1612 dbSNP
rs757033137 1614 dbSNP
rs1459248012 1615 dbSNP
rs927842696 1625 dbSNP
rs758435491 1626 dbSNP
rs1176505892 1630 dbSNP
rs1405738313 1642 dbSNP
rs894421844 1646 dbSNP
rs1337062492 1650 dbSNP
rs982070234 1651 dbSNP
rs1341864669 1655 dbSNP
rs1439459752 1664 dbSNP
rs960989506 1666 dbSNP
rs1278397845 1671 dbSNP
rs1064767 1679 dbSNP
rs942607962 1683 dbSNP
rs983828761 1689 dbSNP
rs191019713 1690 dbSNP
rs952506100 1691 dbSNP
rs1204023743 1702 dbSNP
rs909727577 1704 dbSNP
rs1241235144 1711 dbSNP
rs1203950389 1713 dbSNP
rs984324617 1718 dbSNP
rs1027807062 1719 dbSNP
rs1191015277 1720 dbSNP
rs996718214 1726 dbSNP
rs1473866829 1730 dbSNP
rs1444051100 1735 dbSNP
rs1429196275 1737 dbSNP
rs1480993684 1738 dbSNP
rs537394783 1741 dbSNP
rs900684814 1743 dbSNP
rs1243871826 1749 dbSNP
rs1261042519 1750 dbSNP
rs1407820550 1755 dbSNP
rs951155163 1757 dbSNP
rs1354667323 1761 dbSNP
rs1411117531 1762 dbSNP
rs1321455877 1766 dbSNP
rs111367332 1767 dbSNP
rs766876681 1767 dbSNP
rs1344778166 1775 dbSNP
rs1219420981 1781 dbSNP
rs1276351425 1782 dbSNP
rs1019574750 1786 dbSNP
rs1339147344 1790 dbSNP
rs992524634 1794 dbSNP
rs1009159294 1802 dbSNP
rs143881414 1806 dbSNP
rs1484115842 1810 dbSNP
rs1450892757 1815 dbSNP
rs1341572540 1819 dbSNP
rs1001828673 1822 dbSNP
rs1336865127 1833 dbSNP
rs1042449971 1840 dbSNP
rs1371635988 1849 dbSNP
rs1451307005 1852 dbSNP
rs10892 1853 dbSNP
rs1167029034 1855 dbSNP
rs562686969 1856 dbSNP
rs1055229729 1862 dbSNP
rs1410175799 1862 dbSNP
rs1221691209 1863 dbSNP
rs560342889 1864 dbSNP
rs565084282 1865 dbSNP
rs927822420 1869 dbSNP
rs11897278 1870 dbSNP
rs1324529498 1872 dbSNP
rs773693141 1876 dbSNP
rs562812203 1881 dbSNP
rs544605234 1883 dbSNP
rs1344560181 1884 dbSNP
rs1243904205 1888 dbSNP
rs76284946 1890 dbSNP
rs1360802622 1893 dbSNP
rs1460049848 1904 dbSNP
rs933371811 1907 dbSNP
rs376419718 1913 dbSNP
rs1260252193 1916 dbSNP
rs908217117 1919 dbSNP
rs373395059 1928 dbSNP
rs115328890 1932 dbSNP
rs1450901422 1934 dbSNP
rs117218138 1935 dbSNP
rs942637238 1943 dbSNP
rs1457958858 1945 dbSNP
rs1165002441 1949 dbSNP
rs909767870 1950 dbSNP
rs1230357140 1951 dbSNP
rs1320927569 1955 dbSNP
rs572358586 1960 dbSNP
rs1450640763 1961 dbSNP
rs1314483070 1962 dbSNP
rs1322471718 1966 dbSNP
rs573311376 1968 dbSNP
rs776869979 1968 dbSNP
rs918402489 1972 dbSNP
rs114465317 1973 dbSNP
rs1270337252 1980 dbSNP
rs137952649 1983 dbSNP
rs1019143419 1985 dbSNP
rs1009149584 1988 dbSNP
rs1423929590 1989 dbSNP
rs1353525197 1990 dbSNP
rs1188994033 1991 dbSNP
rs1362017951 1994 dbSNP
rs1326396236 2000 dbSNP
rs1406904498 2006 dbSNP
rs1390493698 2011 dbSNP
rs545010426 2011 dbSNP
rs1020954378 2014 dbSNP
rs555943485 2017 dbSNP
rs980136161 2020 dbSNP
rs1304911770 2022 dbSNP
rs145346443 2022 dbSNP
rs969014816 2023 dbSNP
rs141789883 2025 dbSNP
rs1055579727 2042 dbSNP
rs1002301739 2043 dbSNP
rs1010478939 2051 dbSNP
rs906352670 2055 dbSNP
rs1046256318 2057 dbSNP
rs572515450 2064 dbSNP
rs908497790 2072 dbSNP
rs1048314929 2079 dbSNP
rs554917993 2083 dbSNP
rs1483345972 2084 dbSNP
rs534254714 2085 dbSNP
rs74832529 2086 dbSNP
rs1030499664 2089 dbSNP
rs920945734 2092 dbSNP
rs997633153 2107 dbSNP
rs1414047234 2108 dbSNP
rs1479359591 2109 dbSNP
rs1175380746 2125 dbSNP
rs745641074 2129 dbSNP
rs1359995311 2134 dbSNP
rs975559084 2135 dbSNP
rs1296535439 2137 dbSNP
rs186568399 2138 dbSNP
rs965196633 2139 dbSNP
rs533316398 2141 dbSNP
rs1039055892 2144 dbSNP
rs1223976532 2149 dbSNP
rs1344151374 2149 dbSNP
rs1006607632 2153 dbSNP
rs1279396595 2156 dbSNP
rs887773447 2156 dbSNP
rs1312418276 2159 dbSNP
rs569426556 2168 dbSNP
rs1249250757 2169 dbSNP
rs550842850 2174 dbSNP
rs150128377 2177 dbSNP
rs1220973744 2180 dbSNP
rs929893837 2182 dbSNP
rs987666453 2185 dbSNP
rs1198426766 2186 dbSNP
rs1425533789 2189 dbSNP
rs1434674074 2191 dbSNP
rs562101573 2194 dbSNP
rs1372689503 2203 dbSNP
rs1308558713 2211 dbSNP
rs753270481 2216 dbSNP
rs1371927726 2218 dbSNP
rs1364286631 2226 dbSNP
rs77878964 2230 dbSNP
rs1021194814 2233 dbSNP
rs1294505312 2236 dbSNP
rs1370256763 2241 dbSNP
rs1491175718 2242 dbSNP
rs147465151 2243 dbSNP
rs1056860340 2245 dbSNP
rs1011166197 2252 dbSNP
rs1228535467 2261 dbSNP
rs938436601 2264 dbSNP
rs1357207870 2268 dbSNP
rs181622884 2273 dbSNP
rs958246047 2274 dbSNP
rs1033721255 2278 dbSNP
rs1302291601 2280 dbSNP
rs1489363665 2298 dbSNP
rs1002698238 2301 dbSNP
rs753779078 2302 dbSNP
rs1422723928 2307 dbSNP
rs189144149 2311 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-3
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796039. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gacaagagaaggaAACCGGAAc 5'
                       |||||||| 
Target 5' -------------UUGGCCUUa 3'
 		1 - 9
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_203346 | 3UTR | UCUGGCCUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_203346 | 3UTR | CUGGCCUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_203346 | 3UTR | GCCUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_203346 | 3UTR | CUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_203346 | 3UTR | CUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_203346 | 3UTR | CCUUCAUCACGAGAGCUCCGCAGCCGUGGCUAGGAUUCCACUUCCU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM796039
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-3 / 4-Thiouridine
Location of target site ENST00000391975.1 | 3UTR | UUGGCCUUAACUUUGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-4753-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT064916 ZBTB18 zinc finger and BTB domain containing 18 2 2
MIRT161166 SLC25A36 solute carrier family 25 member 36 2 2
MIRT285542 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT308266 LRIG1 leucine rich repeats and immunoglobulin like domains 1 2 2
MIRT311425 LMNB1 lamin B1 2 2
MIRT373989 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT383141 CRY2 cryptochrome circadian clock 2 2 2
MIRT405243 ADIPOR2 adiponectin receptor 2 2 2
MIRT441620 ROCK1 Rho associated coiled-coil containing protein kinase 1 2 6
MIRT441789 SRPK1 SRSF protein kinase 1 2 2
MIRT441804 NOC3L NOC3 like DNA replication regulator 2 2
MIRT441832 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT442005 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 2 2
MIRT442411 LIMD1 LIM domains containing 1 2 2
MIRT442708 UBE4B ubiquitination factor E4B 2 2
MIRT442714 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT442738 SERINC5 serine incorporator 5 2 2
MIRT442793 CEP170 centrosomal protein 170 2 2
MIRT442984 ZNF736 zinc finger protein 736 2 2
MIRT443055 THRB thyroid hormone receptor beta 2 2
MIRT443288 ZC3H12A zinc finger CCCH-type containing 12A 2 2
MIRT443325 SLC35G1 solute carrier family 35 member G1 2 2
MIRT443331 OCRL OCRL, inositol polyphosphate-5-phosphatase 2 2
MIRT443593 ZNF439 zinc finger protein 439 2 4
MIRT443696 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT443748 ELL2 elongation factor for RNA polymerase II 2 2 2
MIRT443866 HDLBP high density lipoprotein binding protein 2 2
MIRT461185 LTBP2 latent transforming growth factor beta binding protein 2 2 2
MIRT464074 WAC WW domain containing adaptor with coiled-coil 2 2
MIRT468738 SDC4 syndecan 4 2 2
MIRT470540 COASY Coenzyme A synthase 2 2
MIRT476458 GBA2 glucosylceramidase beta 2 2 2
MIRT479470 CDK6 cyclin dependent kinase 6 2 2
MIRT486351 TACC2 transforming acidic coiled-coil containing protein 2 2 8
MIRT495126 CXorf67 chromosome X open reading frame 67 2 2
MIRT495166 CNGA2 cyclic nucleotide gated channel alpha 2 2 4
MIRT495432 ATG7 autophagy related 7 2 2
MIRT495922 FBXO41 F-box protein 41 2 2
MIRT496572 DGCR6L DiGeorge syndrome critical region gene 6 like 2 2
MIRT498277 POFUT1 protein O-fucosyltransferase 1 2 2
MIRT498431 DDX39A DExD-box helicase 39A 2 2
MIRT530149 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit 2 2
MIRT530313 TNFRSF10D TNF receptor superfamily member 10d 2 2
MIRT530880 TRUB1 TruB pseudouridine synthase family member 1 2 4
MIRT531177 ZNF626 zinc finger protein 626 2 2
MIRT533395 TYRP1 tyrosinase related protein 1 2 2
MIRT533709 TMEM64 transmembrane protein 64 2 2
MIRT533954 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 2
MIRT535616 NSD1 nuclear receptor binding SET domain protein 1 2 2
MIRT539472 ADARB2 adenosine deaminase, RNA specific B2 (inactive) 2 2
MIRT542878 NR6A1 nuclear receptor subfamily 6 group A member 1 2 2
MIRT559077 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT559465 ARPP19 cAMP regulated phosphoprotein 19 2 2
MIRT561233 ZNF772 zinc finger protein 772 2 2
MIRT563477 POLE3 DNA polymerase epsilon 3, accessory subunit 2 2
MIRT563995 SLFN11 schlafen family member 11 2 2
MIRT564222 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT566017 RHOA ras homolog family member A 2 2
MIRT566028 RFX1 regulatory factor X1 2 2
MIRT566591 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 2
MIRT567874 CTDSP1 CTD small phosphatase 1 2 2
MIRT568552 AKT2 AKT serine/threonine kinase 2 2 2
MIRT569357 EFHC1 EF-hand domain containing 1 2 2
MIRT569973 DNAAF2 dynein axonemal assembly factor 2 2 2
MIRT614423 ZNF440 zinc finger protein 440 2 2
MIRT628831 SLC25A34 solute carrier family 25 member 34 2 2
MIRT630142 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT634479 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 2 2
MIRT634498 OR7D2 olfactory receptor family 7 subfamily D member 2 2 2
MIRT637394 R3HDM2 R3H domain containing 2 2 2
MIRT641840 TCF7L2 transcription factor 7 like 2 2 2
MIRT644397 CDKL1 cyclin dependent kinase like 1 2 2
MIRT644888 C2orf50 chromosome 2 open reading frame 50 2 2
MIRT647124 ZNF446 zinc finger protein 446 2 2
MIRT647420 SSTR3 somatostatin receptor 3 2 2
MIRT650297 PYCARD PYD and CARD domain containing 2 2
MIRT655488 PAK3 p21 (RAC1) activated kinase 3 2 2
MIRT658185 FBXO9 F-box protein 9 2 2
MIRT660931 ADAM19 ADAM metallopeptidase domain 19 2 2
MIRT665317 ZBTB3 zinc finger and BTB domain containing 3 2 2
MIRT670350 C1orf106 chromosome 1 open reading frame 106 2 4
MIRT670823 NICN1 nicolin 1 2 2
MIRT671825 TRPM6 transient receptor potential cation channel subfamily M member 6 2 2
MIRT672732 NETO2 neuropilin and tolloid like 2 2 2
MIRT674841 GLRX2 glutaredoxin 2 2 2
MIRT675930 CYP51A1 cytochrome P450 family 51 subfamily A member 1 2 2
MIRT686786 AZF1 azoospermia factor 1 2 2
MIRT697723 USP8 ubiquitin specific peptidase 8 2 2
MIRT702357 KLHL26 kelch like family member 26 2 2
MIRT704361 DBR1 debranching RNA lariats 1 2 2
MIRT709242 RANGAP1 Ran GTPase activating protein 1 2 2
MIRT714433 SNED1 sushi, nidogen and EGF like domains 1 2 2
MIRT717000 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT720875 ADCY5 adenylate cyclase 5 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4753 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4753-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-4753-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-4753-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-4753-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A2780)
hsa-miR-4753-5p Platinum 23939 resistant tissue
hsa-miR-4753-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4753-5p Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4753-5p Gemcitabine 60750 NSC613327 approved resistant cell line (Panc1-GR4)

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