miRTarBase - #MIRT444171


—
pre-miRNA Information
pre-miRNA hsa-mir-526b   
Genomic Coordinates chr19: 53694393 - 53694475
Description Homo sapiens miR-526b stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-526b-5p
Sequence 14| CUCUUGAGGGAAGCACUUUCUGU |36
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs527640376 1 dbSNP
rs1397075062 2 dbSNP
rs1462454250 5 dbSNP
rs774071640 7 dbSNP
rs1329470722 12 dbSNP
rs1471427006 13 dbSNP
rs375077514 15 dbSNP
rs1280430663 16 dbSNP
rs370046048 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBM7   
Synonyms -
Description RNA binding motif protein 7
Transcript NM_016090   
Expression
Putative miRNA Targets on RBM7
3'UTR of RBM7
(miRNA target sites are highlighted)		 
>RBM7|NM_016090|3'UTR
   1 CACATGTTAAAAGGACATTGTTTTTATAGGGTCATTTTAGGCCCTTTGACTAAGTTGATATGGAAATATTTTGTTGAAAA
  81 ACTGTACAGAGCAGCTTTACAAGTTGTCACATTTCTTTATAAATTTTTTTAAAGCTACAGTTTAATACAAAATGAATTGC
 161 GGTTTTATTACATTAATAACCTTTCACCTCAGGGTTTTATGAAGAGGAAAGGGTTTTATGCAAAAGAAAGTGCTACAATT
 241 CCTAATCATTTTAGACACTTTAGGAGGGGGTGAAGTTGTATGATAAAGCAGATATTTTAATTATTTGTTATCTTTTTGTA
 321 TTGCAAGAAATTTCTTGCTAGTGAATCAAGAAAACATCCAGGTTGACAGTCTAAAATGGCTACTGGTATTTTAGTTAATT
 401 CAAAAATGAAACTTTTCAGTGATTCACTTTACTAACATTCTATTTGAGAAGGCTTATTGGTAAAGTTTGGGGATAAAGGC
 481 ATTGCTTAACTTCTTATATAATTTAGGTATAAATTCTGTGACATGCTCTTGAGCTTTACCCTAGTTGAACATACATGTGT
 561 AGATTTACACATACTGTTTCATTCTAAAATTTAGAAATTGTTCATTAAATCCCATTTGAGGTATAAGTCACTCAGGAAGT
 641 TAAAATATCTCTACACGTATATTTTTACATTAAAAATACAGTGTTAGCATAAATCCCCTTTTCAGGAAGAACAAAAATGT
 721 CAGTGCATAGTTAGATAAAATGGTAAAATGTTTTACTGAAAGCATACTTTTTTGGAAAATAGATTCATGAAGCCTTTAAG
 801 TGCTGCTTCTGTCAGTCAAACGTTAAAAACTTTAACATTTTCAAAGTGCCCAGACTGTGTACAAAGACACATGTAATGGA
 881 GATTGTACAGGTTGTTTTTTTGTTTGAACCTTTGAAAGAGTTTAATCTTAACGTTTTCTAATTTTAAAATTTTAAAATCT
 961 TGTTTAACAAAAGCTTGTATTAAGATACTGTTTTCATTTCATTACAGAATTGTTTATAAAAGTTCATTTGTTGAAAAATA
1041 AGGATCCTTTTTAATACCACAGCATTTGTACTGTTCCTTTTTAATATACTGAAAATATAAAAGGAAGGGTGTGTGTTATT
1121 TTTTTTTTTTTATGTCACTGACTTCAGAGACATTGTACACAAAGAATTAACATACTTTTATTCACTGATTGCCTGCTGTT
1201 TAGAATATCAGTTCTTTAATTTTGAGCATCCTGAAATACATCTTTTGTACATATAGAGCATGATGTTTCACAATCAGATT
1281 TTCAGTGACCCCTCGATTATAGCTTGGAGTACTTTAGTTACCCTCAGTGGTCTCTAGGAGTTAAAGTACACTTAGATTTC
1361 CTGTTTATAAATGAATTCAGTTTTTCTGTTTCTAAGTAAATGTAGCTATTCAACTACTCACTATAGAATTAAGATAAACA
1441 ATTTGTTTGCTTAAGCATTTTCACAGAATTTGTTTCCAATGAGATTATTATTTTTGGGTATCTTATCCATATGAAAACTT
1521 AGTAGGTTTGTAGATGTTAACGAAGATTAATACTGCATGTTTGTTTTTGTTTTTTTTTTGAGACAGAGTCTTGCTACGAC
1601 ACCCAGGCTAGAGTGCAATGGCGGGATCTCAGGTCACTGCAACCTCCATATCCCGGGTTCAAGTGATTCTCCTGCCTTAG
1681 CCTCCCGAGTAGCTGGGATTACAGGCACCCACCACCACGCCTGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCAC
1761 CACATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTACCTTGGCCTACCGAGGTGCTGGAATTACAGG
1841 TGTGAGCCACCGCGCCTGGCCTAATACTGCTTTATTACAACGTTATCTGTGGGTCGGATCCTTTTATATTGGTTAACAGA
1921 TGACCCTGACTCAGAATAATCTTTTTCAATGGCTTTTTGAGGGAAGCTTGTGAAGTTCTGGTGAATCTTCTTTTTCACTT
2001 CACTTTCAGTGAGCTGAAAGTAACCAAACTAAATACATGTATTGTGTAAAGGGACAGGACAAGACAGCCTTAAAAAATTG
2081 AATATAGTTGGTGAGACAACTCAGAAGTACAGGTTTGAGCATCCCTTATTCAAAATGCTTGAGAAGTGTTTTGGGTTCTG
2161 GAATATTTGCATTAATGCTTGCCAGTTGAGCATCCCAGGTCCGGAAATCCACAGTGCTCCAATGAGCCTTTCCCCTGAGT
2241 GTCACATCTGTATTGGCACTCAAAAAGTTTCATATTTTGGAGCATTTCAGATTTCAGATTTGGGATGCTTCATCTATATT
2321 GACAGCTGCAAGAACAGAAAGGAAGAAGAGATTATTTTTGTGGGAGAACAGTTTCTCCCATAGTGTTTCCTGTGGAATGC
2401 TAGTGTCTCATAAAGTCTTCTAAAAAAAAGAAAAAAAAAATCAAATGTTTGGAAGCCATTTTGTGTTACTGTGTGACTTT
2481 CTTTTACTCAAAAACAGCACCATAAAATTTCTGACAAGTACTATAGGTAAAGAAATCCCTTTATACTTAACCTAGTATTT
2561 TCTACCTTTCCCCATCTAAAATAAAATTTTTATACCACTTTCTAATTATGTTGTGTGTGCCCACTTTCCCCATACCTACT
2641 GCTACCATCTTAGAGTAGGCAATTTTCTCAAGAGGATTATTCCAAGAACACCCTAATGTTTTCCTGCTTCCAGTCTTCTT
2721 TCCTCAAATTTATTCCACACTCTTAAGAATTGAAGATGTAAATCTGTCACTCGCCTGAATAAAGCTTCAGTGGCCTCTGA
2801 CTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugucUUUCA--CG--AAGGGAGUUCUc 5'
              |:|||  ||  ||::||||||| 
Target 5' tcttAGAGTAGGCAATTTTCTCAAGAg 3'
 2648 - 2674 163.00 -19.50
2 
miRNA  3' ugucUUUCACGAAGGGAGUUCuc 5'
              ||| | ||  |||||||  
Target 5' tctcAAACTCCTGACCTCAAGtg 3'
 1778 - 1800 143.00 -13.00
3 
miRNA  3' ugucUUUCACGAAGG-----GAGUUCUc 5'
              ||| |  ||||     ||:|||| 
Target 5' cctcAAATTTATTCCACACTCTTAAGAa 3'
 2722 - 2749 139.00 -9.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30475376 30 COSMIC
COSN17182090 38 COSMIC
COSN30500441 53 COSMIC
COSN30520238 63 COSMIC
COSN31519437 155 COSMIC
COSN31551443 243 COSMIC
COSN31568000 494 COSMIC
COSN31588811 694 COSMIC
COSN5895534 815 COSMIC
COSN23304279 826 COSMIC
COSN27201096 1132 COSMIC
COSN1514704 1241 COSMIC
COSN21536734 1295 COSMIC
COSN8732861 1324 COSMIC
COSN19029746 1423 COSMIC
COSN16424222 1501 COSMIC
COSN6986326 1926 COSMIC
COSN21613858 2650 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1377374099 1 dbSNP
rs1334507486 5 dbSNP
rs759112731 8 dbSNP
rs1291640120 9 dbSNP
rs771742271 10 dbSNP
rs1334421726 14 dbSNP
rs754113563 15 dbSNP
rs376509824 27 dbSNP
rs555698382 35 dbSNP
rs1270139683 36 dbSNP
rs764390303 38 dbSNP
rs1215014186 43 dbSNP
rs747561804 48 dbSNP
rs777222275 53 dbSNP
rs1326934559 59 dbSNP
rs1370487209 62 dbSNP
rs1461230576 62 dbSNP
rs1172082969 67 dbSNP
rs1410098884 74 dbSNP
rs575674158 82 dbSNP
rs1307919645 84 dbSNP
rs771544792 109 dbSNP
rs544674673 115 dbSNP
rs563511786 124 dbSNP
rs1253525432 125 dbSNP
rs1192822172 146 dbSNP
rs982540562 149 dbSNP
rs1467669572 161 dbSNP
rs1332712619 162 dbSNP
rs757663369 163 dbSNP
rs965929785 169 dbSNP
rs975656501 178 dbSNP
rs1304765928 189 dbSNP
rs1304411092 191 dbSNP
rs1341938769 195 dbSNP
rs1440715651 222 dbSNP
rs1233654876 224 dbSNP
rs1369218115 227 dbSNP
rs921545795 236 dbSNP
rs1272344905 239 dbSNP
rs754006158 253 dbSNP
rs936682145 257 dbSNP
rs532340098 258 dbSNP
rs1395690682 259 dbSNP
rs757075095 259 dbSNP
rs1252320704 264 dbSNP
rs545972700 267 dbSNP
rs1179199481 276 dbSNP
rs559692817 281 dbSNP
rs1194189054 282 dbSNP
rs945435056 284 dbSNP
rs1046484303 287 dbSNP
rs906997644 288 dbSNP
rs1281737583 295 dbSNP
rs1234125075 302 dbSNP
rs1003128640 308 dbSNP
rs1309544185 311 dbSNP
rs1055710318 325 dbSNP
rs372287494 326 dbSNP
rs1372208774 335 dbSNP
rs1296093956 339 dbSNP
rs1416156540 344 dbSNP
rs1375464150 360 dbSNP
rs10790007 363 dbSNP
rs1479053708 364 dbSNP
rs1365343974 366 dbSNP
rs1159619847 372 dbSNP
rs1418252385 388 dbSNP
rs1407617812 389 dbSNP
rs995155845 418 dbSNP
rs1171722821 426 dbSNP
rs1026619998 428 dbSNP
rs1210828902 435 dbSNP
rs1393481951 438 dbSNP
rs1482591221 442 dbSNP
rs1354543485 446 dbSNP
rs951044051 447 dbSNP
rs1240298642 448 dbSNP
rs1316688584 459 dbSNP
rs1003923451 461 dbSNP
rs1461019259 470 dbSNP
rs1355573622 474 dbSNP
rs1295997725 478 dbSNP
rs1019789831 479 dbSNP
rs1387094974 481 dbSNP
rs1289370654 485 dbSNP
rs1452863351 486 dbSNP
rs182716508 494 dbSNP
rs976025418 497 dbSNP
rs1476282725 498 dbSNP
rs921508340 525 dbSNP
rs1415053099 527 dbSNP
rs765935194 528 dbSNP
rs150336085 534 dbSNP
rs989704154 541 dbSNP
rs1353316531 544 dbSNP
rs1485749986 552 dbSNP
rs1266585599 562 dbSNP
rs1220308000 564 dbSNP
rs913881870 573 dbSNP
rs1335128757 577 dbSNP
rs1296166519 593 dbSNP
rs187324544 614 dbSNP
rs191775825 622 dbSNP
rs1327666138 623 dbSNP
rs1202462881 642 dbSNP
rs1257864587 655 dbSNP
rs570756702 656 dbSNP
rs928074907 658 dbSNP
rs1210450407 662 dbSNP
rs1362805462 670 dbSNP
rs1340096221 679 dbSNP
rs1255750012 682 dbSNP
rs938528258 690 dbSNP
rs1164466932 697 dbSNP
rs1489475464 698 dbSNP
rs1056060756 702 dbSNP
rs539649343 706 dbSNP
rs1194562754 707 dbSNP
rs1187513951 712 dbSNP
rs745853038 717 dbSNP
rs894320474 718 dbSNP
rs1469182865 728 dbSNP
rs1272215427 735 dbSNP
rs1207638805 736 dbSNP
rs1340863468 751 dbSNP
rs1251342555 759 dbSNP
rs1226031899 764 dbSNP
rs184595306 765 dbSNP
rs1340022270 766 dbSNP
rs1427284306 776 dbSNP
rs995397025 781 dbSNP
rs1167655514 785 dbSNP
rs1369904137 794 dbSNP
rs566839941 796 dbSNP
rs886739016 804 dbSNP
rs1398760525 806 dbSNP
rs187549255 807 dbSNP
rs1168614075 808 dbSNP
rs1429148171 809 dbSNP
rs1388928573 810 dbSNP
rs1311890222 811 dbSNP
rs1373280350 812 dbSNP
rs1454991903 819 dbSNP
rs1252690902 822 dbSNP
rs137985646 823 dbSNP
rs1003913620 831 dbSNP
rs1250755843 831 dbSNP
rs758764430 831 dbSNP
rs900941864 832 dbSNP
rs575581288 845 dbSNP
rs1234854534 854 dbSNP
rs1028881035 856 dbSNP
rs1272810878 858 dbSNP
rs149447587 859 dbSNP
rs536381090 862 dbSNP
rs1361133186 870 dbSNP
rs958218819 871 dbSNP
rs1360202538 872 dbSNP
rs770005933 873 dbSNP
rs1368721976 874 dbSNP
rs1315358908 879 dbSNP
rs1435839710 883 dbSNP
rs193268872 886 dbSNP
rs1171233923 889 dbSNP
rs1021171664 894 dbSNP
rs775222263 901 dbSNP
rs1180578307 905 dbSNP
rs778357226 919 dbSNP
rs762445291 933 dbSNP
rs1258961016 934 dbSNP
rs752062165 938 dbSNP
rs1348664947 939 dbSNP
rs1276374873 943 dbSNP
rs966667040 946 dbSNP
rs185442231 947 dbSNP
rs1280370563 953 dbSNP
rs1227943619 956 dbSNP
rs1348739932 961 dbSNP
rs1295150049 964 dbSNP
rs1415451249 973 dbSNP
rs373246780 974 dbSNP
rs928065702 987 dbSNP
rs1356185153 992 dbSNP
rs938062765 997 dbSNP
rs1402821698 999 dbSNP
rs990925234 1009 dbSNP
rs915725734 1010 dbSNP
rs1419546873 1016 dbSNP
rs1471380323 1016 dbSNP
rs1188090928 1018 dbSNP
rs931148827 1020 dbSNP
rs1235719737 1024 dbSNP
rs559431866 1026 dbSNP
rs1447367647 1037 dbSNP
rs1283245085 1039 dbSNP
rs1193440291 1040 dbSNP
rs1254252351 1042 dbSNP
rs887048011 1043 dbSNP
rs1327403581 1044 dbSNP
rs939665353 1061 dbSNP
rs1392823385 1069 dbSNP
rs1378456510 1072 dbSNP
rs1041144131 1075 dbSNP
rs1433458145 1083 dbSNP
rs479717 1093 dbSNP
rs1327413536 1099 dbSNP
rs376513279 1100 dbSNP
rs1159475773 1101 dbSNP
rs996961606 1104 dbSNP
rs1165175457 1109 dbSNP
rs1396303535 1109 dbSNP
rs1404253515 1114 dbSNP
rs1028090025 1116 dbSNP
rs1247317873 1116 dbSNP
rs893946466 1116 dbSNP
rs1011057170 1117 dbSNP
rs1186485141 1117 dbSNP
rs1428447210 1118 dbSNP
rs1216385501 1119 dbSNP
rs1287758341 1119 dbSNP
rs534414948 1119 dbSNP
rs966056210 1119 dbSNP
rs976565261 1120 dbSNP
rs1021142355 1124 dbSNP
rs1029102542 1126 dbSNP
rs1297499250 1127 dbSNP
rs77234077 1131 dbSNP
rs1433417004 1132 dbSNP
rs1371695171 1133 dbSNP
rs1440238313 1135 dbSNP
rs1326171239 1139 dbSNP
rs1435258498 1146 dbSNP
rs953990424 1148 dbSNP
rs982124438 1155 dbSNP
rs572023267 1159 dbSNP
rs1301372079 1160 dbSNP
rs1035396445 1173 dbSNP
rs985325165 1174 dbSNP
rs1455426425 1182 dbSNP
rs925830096 1185 dbSNP
rs1192021114 1187 dbSNP
rs959420964 1192 dbSNP
rs1245174941 1199 dbSNP
rs755643477 1205 dbSNP
rs1283931620 1206 dbSNP
rs11214981 1210 dbSNP
rs912896982 1213 dbSNP
rs1226746195 1215 dbSNP
rs190249178 1229 dbSNP
rs1218983394 1232 dbSNP
rs548110274 1232 dbSNP
rs1045871116 1238 dbSNP
rs181392388 1241 dbSNP
rs648642 1247 dbSNP
rs937475586 1248 dbSNP
rs1299520631 1253 dbSNP
rs1442319045 1255 dbSNP
rs1250600721 1258 dbSNP
rs1369327913 1259 dbSNP
rs1049235352 1261 dbSNP
rs887989885 1272 dbSNP
rs573079844 1274 dbSNP
rs1177408926 1286 dbSNP
rs1005088582 1291 dbSNP
rs1398711742 1295 dbSNP
rs542090932 1296 dbSNP
rs939898846 1301 dbSNP
rs481649 1306 dbSNP
rs184295929 1310 dbSNP
rs1395068170 1318 dbSNP
rs1036606845 1324 dbSNP
rs1431228334 1326 dbSNP
rs1423391357 1330 dbSNP
rs1179104858 1335 dbSNP
rs1472960148 1340 dbSNP
rs1460885976 1347 dbSNP
rs901833595 1352 dbSNP
rs900811024 1353 dbSNP
rs80217394 1355 dbSNP
rs1257067976 1373 dbSNP
rs1049928817 1376 dbSNP
rs893579784 1379 dbSNP
rs1029464121 1396 dbSNP
rs1371512852 1402 dbSNP
rs953497346 1405 dbSNP
rs1285970507 1406 dbSNP
rs1042565551 1409 dbSNP
rs1376072835 1411 dbSNP
rs1302182455 1424 dbSNP
rs550112854 1425 dbSNP
rs1464364994 1436 dbSNP
rs1346670908 1437 dbSNP
rs1161589884 1440 dbSNP
rs902695302 1442 dbSNP
rs1294321707 1446 dbSNP
rs1004181518 1457 dbSNP
rs1007097989 1468 dbSNP
rs145945092 1478 dbSNP
rs1035292880 1480 dbSNP
rs1181719641 1484 dbSNP
rs1482499871 1487 dbSNP
rs139002162 1495 dbSNP
rs188720727 1496 dbSNP
rs1260606459 1503 dbSNP
rs1027738644 1519 dbSNP
rs750283998 1520 dbSNP
rs952142537 1521 dbSNP
rs988716255 1522 dbSNP
rs1340483399 1525 dbSNP
rs1311922778 1527 dbSNP
rs1394173929 1531 dbSNP
rs1439034707 1532 dbSNP
rs1363839087 1542 dbSNP
rs566705102 1545 dbSNP
rs1321032234 1550 dbSNP
rs1421700406 1553 dbSNP
rs1456479346 1554 dbSNP
rs1350197841 1558 dbSNP
rs1204659383 1560 dbSNP
rs1388265803 1564 dbSNP
rs913173615 1564 dbSNP
rs1157201885 1566 dbSNP
rs142443099 1566 dbSNP
rs58001251 1566 dbSNP
rs67779902 1567 dbSNP
rs1189692395 1570 dbSNP
rs386374969 1570 dbSNP
rs971025819 1570 dbSNP
rs1464721255 1571 dbSNP
rs111294245 1574 dbSNP
rs115841138 1578 dbSNP
rs908336930 1583 dbSNP
rs1189755308 1595 dbSNP
rs937108866 1597 dbSNP
rs867521913 1599 dbSNP
rs1298236246 1606 dbSNP
rs1434168020 1613 dbSNP
rs1362693033 1617 dbSNP
rs543215821 1619 dbSNP
rs142281711 1623 dbSNP
rs940890792 1624 dbSNP
rs569204168 1627 dbSNP
rs1162686920 1629 dbSNP
rs932288966 1631 dbSNP
rs1398631802 1640 dbSNP
rs1049422780 1641 dbSNP
rs1375348850 1645 dbSNP
rs1410581762 1649 dbSNP
rs1169724657 1652 dbSNP
rs1328295910 1654 dbSNP
rs766024969 1655 dbSNP
rs538246040 1656 dbSNP
rs1451870757 1657 dbSNP
rs1294224025 1661 dbSNP
rs181102102 1662 dbSNP
rs1231913758 1672 dbSNP
rs1481320142 1673 dbSNP
rs578157737 1679 dbSNP
rs1227523474 1681 dbSNP
rs997892638 1687 dbSNP
rs113416602 1688 dbSNP
rs1233667292 1703 dbSNP
rs1340748352 1704 dbSNP
rs534261558 1709 dbSNP
rs1050452505 1714 dbSNP
rs753033650 1719 dbSNP
rs545676273 1720 dbSNP
rs1309201116 1726 dbSNP
rs1429616643 1729 dbSNP
rs902653380 1729 dbSNP
rs1271721446 1732 dbSNP
rs1478557294 1737 dbSNP
rs1000951812 1750 dbSNP
rs1376771789 1754 dbSNP
rs1032459080 1763 dbSNP
rs780042988 1780 dbSNP
rs1003745383 1788 dbSNP
rs957175915 1801 dbSNP
rs1203785323 1803 dbSNP
rs1010089336 1804 dbSNP
rs1481831867 1806 dbSNP
rs1212597314 1807 dbSNP
rs553238571 1812 dbSNP
rs1200885060 1817 dbSNP
rs1343963269 1822 dbSNP
rs1257863231 1823 dbSNP
rs1231278475 1824 dbSNP
rs572984522 1826 dbSNP
rs541803713 1831 dbSNP
rs758683635 1839 dbSNP
rs1409248548 1847 dbSNP
rs111956479 1852 dbSNP
rs1374674992 1853 dbSNP
rs1034015910 1854 dbSNP
rs575409533 1855 dbSNP
rs71465288 1858 dbSNP
rs1167339767 1868 dbSNP
rs1458534799 1878 dbSNP
rs543821890 1878 dbSNP
rs952028315 1882 dbSNP
rs1004947073 1896 dbSNP
rs1436721880 1899 dbSNP
rs1015028587 1900 dbSNP
rs961488745 1907 dbSNP
rs747055681 1922 dbSNP
rs1441659924 1925 dbSNP
rs563711536 1930 dbSNP
rs749387153 1947 dbSNP
rs768680061 1950 dbSNP
rs1413301214 1969 dbSNP
rs1331542936 1971 dbSNP
rs781734041 1982 dbSNP
rs972214557 1985 dbSNP
rs1327494842 1988 dbSNP
rs1348650174 1999 dbSNP
rs1286475379 2002 dbSNP
rs923486652 2009 dbSNP
rs1269021285 2010 dbSNP
rs1332653874 2021 dbSNP
rs1388994185 2031 dbSNP
rs1157880030 2036 dbSNP
rs774343809 2037 dbSNP
rs985349094 2041 dbSNP
rs1235945976 2046 dbSNP
rs1163788723 2049 dbSNP
rs1472457294 2058 dbSNP
rs914868628 2060 dbSNP
rs866742027 2061 dbSNP
rs1190352950 2067 dbSNP
rs933586095 2084 dbSNP
rs1346728240 2090 dbSNP
rs1051153007 2092 dbSNP
rs1198471729 2098 dbSNP
rs12279446 2105 dbSNP
rs1465173986 2108 dbSNP
rs889111864 2115 dbSNP
rs1208272840 2123 dbSNP
rs1327204058 2128 dbSNP
rs536596554 2129 dbSNP
rs923739121 2137 dbSNP
rs1192362125 2142 dbSNP
rs1053844690 2148 dbSNP
rs1282928672 2149 dbSNP
rs1231090544 2155 dbSNP
rs892565168 2176 dbSNP
rs532891832 2177 dbSNP
rs1319505477 2182 dbSNP
rs1056669091 2186 dbSNP
rs546277630 2190 dbSNP
rs948246507 2196 dbSNP
rs1299107358 2198 dbSNP
rs1404240171 2200 dbSNP
rs1020130466 2203 dbSNP
rs887748116 2204 dbSNP
rs1160595339 2210 dbSNP
rs13725 2213 dbSNP
rs1002783140 2218 dbSNP
rs1188190559 2222 dbSNP
rs748996207 2223 dbSNP
rs1222476452 2224 dbSNP
rs1034708077 2227 dbSNP
rs958380092 2228 dbSNP
rs1316843677 2235 dbSNP
rs1373881535 2239 dbSNP
rs1442403833 2240 dbSNP
rs1226614803 2244 dbSNP
rs9326243 2247 dbSNP
rs1369704050 2251 dbSNP
rs1230625682 2255 dbSNP
rs1275064269 2256 dbSNP
rs1435150606 2257 dbSNP
rs372849206 2259 dbSNP
rs1309812008 2268 dbSNP
rs1430273872 2270 dbSNP
rs1369841367 2273 dbSNP
rs1166554422 2274 dbSNP
rs1434672805 2295 dbSNP
rs961772740 2296 dbSNP
rs954013417 2304 dbSNP
rs773160579 2310 dbSNP
rs985317742 2317 dbSNP
rs1477756031 2319 dbSNP
rs1204371626 2320 dbSNP
rs761340727 2329 dbSNP
rs766960963 2330 dbSNP
rs1469786642 2332 dbSNP
rs773210661 2335 dbSNP
rs1207347210 2338 dbSNP
rs1483693788 2352 dbSNP
rs1274550819 2354 dbSNP
rs186209618 2356 dbSNP
rs1314253281 2361 dbSNP
rs967671824 2369 dbSNP
rs933516196 2370 dbSNP
rs1054777 2375 dbSNP
rs977768173 2376 dbSNP
rs1364907259 2379 dbSNP
rs1289732445 2380 dbSNP
rs986383086 2389 dbSNP
rs1252459598 2390 dbSNP
rs939082365 2393 dbSNP
rs1306045726 2396 dbSNP
rs1467393964 2398 dbSNP
rs910815737 2400 dbSNP
rs992320541 2407 dbSNP
rs1414166723 2408 dbSNP
rs1184234470 2412 dbSNP
rs1364667919 2421 dbSNP
rs1133487 2422 dbSNP
rs1427417526 2422 dbSNP
rs936654413 2423 dbSNP
rs200210940 2430 dbSNP
rs11407769 2431 dbSNP
rs1175925724 2431 dbSNP
rs1484461634 2431 dbSNP
rs397725545 2431 dbSNP
rs77707557 2431 dbSNP
rs1256906536 2437 dbSNP
rs1053793307 2438 dbSNP
rs1209828264 2449 dbSNP
rs916731048 2453 dbSNP
rs892513003 2464 dbSNP
rs569547901 2465 dbSNP
rs1228483842 2466 dbSNP
rs538127176 2466 dbSNP
rs948215325 2470 dbSNP
rs945439562 2473 dbSNP
rs1327788602 2482 dbSNP
rs1304822500 2496 dbSNP
rs1397659641 2498 dbSNP
rs1157243835 2505 dbSNP
rs1049328160 2507 dbSNP
rs1445541670 2513 dbSNP
rs1404265215 2519 dbSNP
rs868694101 2523 dbSNP
rs1161573669 2524 dbSNP
rs1457843196 2533 dbSNP
rs535722 2544 dbSNP
rs1462429021 2553 dbSNP
rs940668743 2558 dbSNP
rs868112291 2562 dbSNP
rs571649663 2565 dbSNP
rs534331058 2567 dbSNP
rs1325925556 2571 dbSNP
rs138262296 2574 dbSNP
rs901847714 2576 dbSNP
rs1384635833 2587 dbSNP
rs997568329 2599 dbSNP
rs190681770 2609 dbSNP
rs907022103 2616 dbSNP
rs146360837 2618 dbSNP
rs535647338 2620 dbSNP
rs1006704335 2622 dbSNP
rs1243522852 2625 dbSNP
rs1367013349 2630 dbSNP
rs75472325 2634 dbSNP
rs1436029930 2636 dbSNP
rs1005803524 2638 dbSNP
rs1015880003 2640 dbSNP
rs148571476 2647 dbSNP
rs544080165 2649 dbSNP
rs1164606242 2658 dbSNP
rs1030627974 2659 dbSNP
rs993197135 2663 dbSNP
rs1487544620 2670 dbSNP
rs1464188874 2672 dbSNP
rs1259224566 2673 dbSNP
rs991893517 2678 dbSNP
rs10502184 2679 dbSNP
rs1264801744 2685 dbSNP
rs954879960 2698 dbSNP
rs1251489408 2706 dbSNP
rs948183079 2709 dbSNP
rs1298130245 2716 dbSNP
rs182417944 2724 dbSNP
rs1326139457 2728 dbSNP
rs910773755 2733 dbSNP
rs751784371 2738 dbSNP
rs989771183 2740 dbSNP
rs560581041 2742 dbSNP
rs1391490547 2743 dbSNP
rs1303102283 2745 dbSNP
rs1475771546 2746 dbSNP
rs1423346937 2748 dbSNP
rs913897751 2750 dbSNP
rs1037022652 2757 dbSNP
rs1169695198 2759 dbSNP
rs1449223935 2771 dbSNP
rs557960769 2773 dbSNP
rs1433298846 2774 dbSNP
rs574346402 2774 dbSNP
rs1367273434 2780 dbSNP
rs560198470 2789 dbSNP
rs1299403062 2791 dbSNP
rs1396725169 2800 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000540163.1 | 3UTR | UCAAGAAAACAUCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.591 1.2e-3 -0.688 1.0e-4 24 Click to see details
GSE38226 Liver fibrosis -0.483 1.3e-2 0.182 2.1e-1 21 Click to see details
GSE21849 B cell lymphoma -0.386 1.9e-2 -0.381 2.1e-2 29 Click to see details
GSE21032 Prostate cancer -0.186 4.6e-2 -0.200 3.5e-2 83 Click to see details
GSE27834 Pluripotent stem cells -0.429 4.9e-2 -0.379 7.4e-2 16 Click to see details
GSE19783 ER+ ER+ breast cancer -0.303 9.7e-2 -0.475 1.7e-2 20 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.233 1.3e-1 0.380 3.0e-2 25 Click to see details
GSE19350 CNS germ cell tumors -0.319 1.6e-1 -0.196 2.7e-1 12 Click to see details
GSE17498 Multiple myeloma 0.15 1.8e-1 0.043 4.0e-1 40 Click to see details
GSE19783 ER- ER- breast cancer 0.095 2.0e-1 0.140 1.1e-1 79 Click to see details
GSE19536 Breast cancer 0.083 2.1e-1 0.105 1.5e-1 100 Click to see details
GSE14794 Lymphoblastoid cells -0.071 2.5e-1 -0.053 3.1e-1 90 Click to see details
GSE21687 Ependynoma primary tumors -0.077 2.7e-1 0.064 3.1e-1 64 Click to see details
GSE42095 Differentiated embryonic stem cells 0.104 3.2e-1 0.145 2.5e-1 23 Click to see details
GSE28260 Renal cortex and medulla -0.132 3.3e-1 -0.004 4.9e-1 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.087 3.4e-1 0.103 3.1e-1 25 Click to see details
GSE17306 Multiple myeloma 0.041 3.9e-1 0.057 3.5e-1 49 Click to see details
GSE32688 Pancreatic cancer 0.026 4.4e-1 0.053 3.9e-1 32 Click to see details
GSE26953 Aortic valvular endothelial cells -0.009 4.8e-1 0.035 4.4e-1 24 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.009 4.8e-1 -0.241 1.5e-1 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.009 4.8e-1 -0.241 1.5e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.857 0 0.786 0.01 8 Click to see details
PRAD -0.572 0.02 -0.445 0.06 13 Click to see details
BRCA 0.194 0.08 0.207 0.06 56 Click to see details
LIHC -0.328 0.19 -0.167 0.33 9 Click to see details
UCEC -0.496 0.25 -0.200 0.4 4 Click to see details
HNSC 0.146 0.27 0.021 0.46 20 Click to see details
THCA 0.09 0.37 0.097 0.36 16 Click to see details
STAD 0.051 0.47 0.000 0.5 5 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
LUSC -0.016 0.48 -0.233 0.27 9 Click to see details
234 hsa-miR-526b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT382022 FAM49B family with sequence similarity 49 member B 2 2
MIRT442559 CAB39 calcium binding protein 39 2 2
MIRT443783 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443886 CNKSR3 CNKSR family member 3 2 2
MIRT443970 SSH2 slingshot protein phosphatase 2 2 2
MIRT444050 PROX2 prospero homeobox 2 2 2
MIRT444128 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444144 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT444171 RBM7 RNA binding motif protein 7 2 2
MIRT444185 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT444217 METTL12 methyltransferase like 12 2 2
MIRT444474 WNT5A Wnt family member 5A 2 2
MIRT444582 GPR89B G protein-coupled receptor 89B 2 2
MIRT444659 TSPAN14 tetraspanin 14 2 2
MIRT444755 LUZP1 leucine zipper protein 1 2 2
MIRT444768 ZNF90 zinc finger protein 90 2 2
MIRT444862 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT444904 KIAA1841 KIAA1841 2 2
MIRT444941 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT444966 CDH7 cadherin 7 2 2
MIRT445008 TMEM106B transmembrane protein 106B 2 2
MIRT445014 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445036 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT445045 PURB purine rich element binding protein B 2 2
MIRT445075 CXXC4 CXXC finger protein 4 2 2
MIRT445148 KLHL23 kelch like family member 23 2 2
MIRT445228 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT445258 C9orf66 chromosome 9 open reading frame 66 2 2
MIRT445263 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT445413 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT445431 ESD esterase D 2 2
MIRT445475 KDM6A lysine demethylase 6A 2 2
MIRT445618 CLIC4 chloride intracellular channel 4 2 2
MIRT445709 RBL1 RB transcriptional corepressor like 1 2 2
MIRT445736 ITM2A integral membrane protein 2A 2 2
MIRT445787 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445796 IFIT1 interferon induced protein with tetratricopeptide repeats 1 2 2
MIRT445801 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT445805 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT445814 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT445861 ZNF451 zinc finger protein 451 2 2
MIRT445871 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445964 IKZF5 IKAROS family zinc finger 5 2 2
MIRT445974 TSPYL1 TSPY like 1 2 2
MIRT446013 VNN1 vanin 1 2 2
MIRT446021 HBS1L HBS1 like translational GTPase 2 2
MIRT446080 RCOR3 REST corepressor 3 2 2
MIRT446084 SLC30A10 solute carrier family 30 member 10 2 2
MIRT446102 TSC22D2 TSC22 domain family member 2 2 2
MIRT446174 ZNF37A zinc finger protein 37A 2 2
MIRT446185 FGF1 fibroblast growth factor 1 2 2
MIRT446197 GTPBP4 GTP binding protein 4 2 2
MIRT446212 SLC25A44 solute carrier family 25 member 44 2 2
MIRT446229 C17orf80 chromosome 17 open reading frame 80 2 2
MIRT446311 TBC1D8B TBC1 domain family member 8B 2 2
MIRT446362 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT446383 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446411 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446535 GOLGA8B golgin A8 family member B 2 2
MIRT446544 ASTN2 astrotactin 2 2 2
MIRT446563 IDS iduronate 2-sulfatase 2 2
MIRT446569 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT446596 AKAP1 A-kinase anchoring protein 1 2 2
MIRT446703 FUT10 fucosyltransferase 10 2 2
MIRT446778 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT446782 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT446787 KIF1C kinesin family member 1C 2 2
MIRT446795 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT446801 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT446841 FOXP1 forkhead box P1 2 2
MIRT446848 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT446865 NBPF3 NBPF member 3 2 2
MIRT446883 TRIM25 tripartite motif containing 25 2 2
MIRT446904 RGS5 regulator of G protein signaling 5 2 2
MIRT446910 GPR89A G protein-coupled receptor 89A 2 2
MIRT446931 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT446942 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446976 SUSD5 sushi domain containing 5 2 2
MIRT447005 RSF1 remodeling and spacing factor 1 2 2
MIRT447027 TACR3 tachykinin receptor 3 2 2
MIRT447037 ZNF439 zinc finger protein 439 2 2
MIRT447050 STARD5 StAR related lipid transfer domain containing 5 2 2
MIRT447056 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447145 HHIP hedgehog interacting protein 2 2
MIRT447152 PRSS12 protease, serine 12 2 2
MIRT447179 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447198 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2 2
MIRT447210 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447238 IHH indian hedgehog 2 2
MIRT447271 FZD5 frizzled class receptor 5 2 2
MIRT447322 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447390 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT447409 MED21 mediator complex subunit 21 2 2
MIRT447478 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT447549 C14orf37 chromosome 14 open reading frame 37 2 2
MIRT447628 NDST4 N-deacetylase and N-sulfotransferase 4 2 2
MIRT447645 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT447694 OGN osteoglycin 2 2
MIRT447733 MOCOS molybdenum cofactor sulfurase 2 2
MIRT447739 C12orf4 chromosome 12 open reading frame 4 2 2
MIRT447868 TRNT1 tRNA nucleotidyl transferase 1 2 2
MIRT447979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT447992 CDX1 caudal type homeobox 1 2 2
MIRT448067 SLC25A43 solute carrier family 25 member 43 2 2
MIRT448113 SEMA4G semaphorin 4G 2 2
MIRT448129 CCDC80 coiled-coil domain containing 80 2 2
MIRT448171 ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 2 2
MIRT448299 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT448447 SMC3 structural maintenance of chromosomes 3 2 2
MIRT448467 SLC45A4 solute carrier family 45 member 4 2 2
MIRT448472 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT448481 SEMA4F ssemaphorin 4F 2 2
MIRT448747 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448765 GOLGA8A golgin A8 family member A 2 2
MIRT448830 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT448852 FEM1C fem-1 homolog C 2 2
MIRT448899 CLOCK clock circadian regulator 2 2
MIRT448905 CLCN6 chloride voltage-gated channel 6 2 4
MIRT448951 CDK19 cyclin dependent kinase 19 2 2
MIRT448974 CADM2 cell adhesion molecule 2 2 2
MIRT449021 AMER2 APC membrane recruitment protein 2 2 2
MIRT449053 NUDT3 nudix hydrolase 3 2 2
MIRT449065 ZNF24 zinc finger protein 24 2 2
MIRT449069 CNDP2 carnosine dipeptidase 2 2 2
MIRT449120 XRRA1 X-ray radiation resistance associated 1 2 2
MIRT449177 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT449304 PARP3 poly(ADP-ribose) polymerase family member 3 2 2
MIRT449319 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449345 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT449424 GPR75 G protein-coupled receptor 75 2 2
MIRT449440 STAMBP STAM binding protein 2 2
MIRT449474 ZNF84 zinc finger protein 84 2 2
MIRT449504 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449599 INIP INTS3 and NABP interacting protein 2 4
MIRT449611 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT449630 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT449654 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT449679 CDR1 cerebellar degeneration related protein 1 2 2
MIRT449730 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT449777 NUDT16 nudix hydrolase 16 2 2
MIRT449826 TLR4 toll like receptor 4 2 2
MIRT449832 AGK acylglycerol kinase 2 2
MIRT449855 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT449927 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT450126 NSUN3 NOP2/Sun RNA methyltransferase family member 3 2 2
MIRT450202 ABHD15 abhydrolase domain containing 15 2 2
MIRT450243 TRIM66 tripartite motif containing 66 2 2
MIRT450268 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450337 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450341 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT450344 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT450374 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT450408 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT450427 CPOX coproporphyrinogen oxidase 2 2
MIRT450451 ZDHHC2 zinc finger DHHC-type containing 2 2 2
MIRT450463 ENOX1 ecto-NOX disulfide-thiol exchanger 1 2 2
MIRT450527 PGLS 6-phosphogluconolactonase 2 2
MIRT450540 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450631 ZNF654 zinc finger protein 654 2 2
MIRT450652 TMEM70 transmembrane protein 70 2 2
MIRT450670 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT450685 RPN2 ribophorin II 2 2
MIRT450707 RNF152 ring finger protein 152 2 2
MIRT450765 PPAPDC2 phospholipid phosphatase 6 2 2
MIRT450812 LIFR LIF receptor alpha 2 2
MIRT450867 GPR107 G protein-coupled receptor 107 2 2
MIRT464938 TXLNA taxilin alpha 2 4
MIRT472332 NETO2 neuropilin and tolloid like 2 2 2
MIRT478672 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT485664 CDC25B cell division cycle 25B 2 2
MIRT497300 CD300LB CD300 molecule like family member b 2 2
MIRT497587 SLC23A1 solute carrier family 23 member 1 2 2
MIRT497762 KIAA0895 KIAA0895 2 2
MIRT497815 STAT5B signal transducer and activator of transcription 5B 2 2
MIRT497827 GPR26 G protein-coupled receptor 26 2 2
MIRT497855 LGR5 leucine rich repeat containing G protein-coupled receptor 5 2 2
MIRT497975 XBP1P1 X-box binding protein 1 pseudogene 1 2 2
MIRT498178 CREB1 cAMP responsive element binding protein 1 2 2
MIRT498333 PRELID2 PRELI domain containing 2 2 2
MIRT501771 NRBF2 nuclear receptor binding factor 2 2 6
MIRT504823 RAP2A RAP2A, member of RAS oncogene family 2 6
MIRT510498 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT513131 ZNF431 zinc finger protein 431 2 2
MIRT524341 CREBRF CREB3 regulatory factor 2 4
MIRT528236 SPIN4 spindlin family member 4 2 2
MIRT534138 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT535420 PDZD8 PDZ domain containing 8 2 2
MIRT535876 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT540789 TMOD2 tropomodulin 2 2 2
MIRT540925 OIP5 Opa interacting protein 5 2 2
MIRT544028 STAM signal transducing adaptor molecule 2 2
MIRT546027 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT551818 TMEM138 transmembrane protein 138 2 2
MIRT556115 MLEC malectin 2 4
MIRT557669 GATA6 GATA binding protein 6 2 2
MIRT568897 MGRN1 mahogunin ring finger 1 2 2
MIRT573538 MDM2 MDM2 proto-oncogene 2 2
MIRT615473 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT618257 DDX51 DEAD-box helicase 51 2 2
MIRT619905 FAM43B family with sequence similarity 43 member B 2 2
MIRT621109 SP110 SP110 nuclear body protein 2 2
MIRT622331 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622682 PLSCR1 phospholipid scramblase 1 2 2
MIRT624095 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT628661 FAM83C family with sequence similarity 83 member C 2 2
MIRT639259 MANEAL mannosidase endo-alpha like 2 2
MIRT641171 LYPLA1 lysophospholipase I 2 2
MIRT642966 FUT6 fucosyltransferase 6 2 2
MIRT643539 SLC25A17 solute carrier family 25 member 17 2 2
MIRT648679 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649446 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 2 2
MIRT651353 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT651565 WHSC1L1 nuclear receptor binding SET domain protein 3 2 2
MIRT652242 TPPP tubulin polymerization promoting protein 2 2
MIRT653925 SERPINC1 serpin family C member 1 2 2
MIRT654113 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658395 FAM221B family with sequence similarity 221 member B 2 2
MIRT658581 EPHB1 EPH receptor B1 2 2
MIRT660026 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT661405 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT664138 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT665655 TRIM33 tripartite motif containing 33 2 2
MIRT691641 SLC43A3 solute carrier family 43 member 3 2 2
MIRT692708 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693859 IYD iodotyrosine deiodinase 2 2
MIRT702910 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT705052 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705124 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT705534 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT708676 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT709868 A1CF APOBEC1 complementation factor 2 2
MIRT715657 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT716567 DLGAP2 DLG associated protein 2 2 2
MIRT737090 SIK2 salt inducible kinase 2 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-526b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-526b 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-526b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-526b Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-526b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-526b-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, H3122)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-526b-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-526b-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-526b-5p Testosterone+Letrozole sensitive cell line (MCF-7)
hsa-miR-526b-5p Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-526b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (HCT15)
hsa-miR-526b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-526b-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-526b-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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