miRTarBase - #MIRT444174


—
pre-miRNA Information
pre-miRNA hsa-mir-4307   
Genomic Coordinates chr14: 26908642 - 26908725
Description Homo sapiens miR-4307 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4307
Sequence 56| AAUGUUUUUUCCUGUUUCC |74
Evidence Experimental
Experiments SOLiD
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1056441032 1 dbSNP
rs776987575 3 dbSNP
rs948027524 8 dbSNP
rs930210474 12 dbSNP
rs191460273 13 dbSNP
rs538831777 14 dbSNP
rs1158802910 15 dbSNP
rs1047679599 17 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol RBM7   
Synonyms -
Description RNA binding motif protein 7
Transcript NM_016090   
Expression
Putative miRNA Targets on RBM7
3'UTR of RBM7
(miRNA target sites are highlighted)		 
>RBM7|NM_016090|3'UTR
   1 CACATGTTAAAAGGACATTGTTTTTATAGGGTCATTTTAGGCCCTTTGACTAAGTTGATATGGAAATATTTTGTTGAAAA
  81 ACTGTACAGAGCAGCTTTACAAGTTGTCACATTTCTTTATAAATTTTTTTAAAGCTACAGTTTAATACAAAATGAATTGC
 161 GGTTTTATTACATTAATAACCTTTCACCTCAGGGTTTTATGAAGAGGAAAGGGTTTTATGCAAAAGAAAGTGCTACAATT
 241 CCTAATCATTTTAGACACTTTAGGAGGGGGTGAAGTTGTATGATAAAGCAGATATTTTAATTATTTGTTATCTTTTTGTA
 321 TTGCAAGAAATTTCTTGCTAGTGAATCAAGAAAACATCCAGGTTGACAGTCTAAAATGGCTACTGGTATTTTAGTTAATT
 401 CAAAAATGAAACTTTTCAGTGATTCACTTTACTAACATTCTATTTGAGAAGGCTTATTGGTAAAGTTTGGGGATAAAGGC
 481 ATTGCTTAACTTCTTATATAATTTAGGTATAAATTCTGTGACATGCTCTTGAGCTTTACCCTAGTTGAACATACATGTGT
 561 AGATTTACACATACTGTTTCATTCTAAAATTTAGAAATTGTTCATTAAATCCCATTTGAGGTATAAGTCACTCAGGAAGT
 641 TAAAATATCTCTACACGTATATTTTTACATTAAAAATACAGTGTTAGCATAAATCCCCTTTTCAGGAAGAACAAAAATGT
 721 CAGTGCATAGTTAGATAAAATGGTAAAATGTTTTACTGAAAGCATACTTTTTTGGAAAATAGATTCATGAAGCCTTTAAG
 801 TGCTGCTTCTGTCAGTCAAACGTTAAAAACTTTAACATTTTCAAAGTGCCCAGACTGTGTACAAAGACACATGTAATGGA
 881 GATTGTACAGGTTGTTTTTTTGTTTGAACCTTTGAAAGAGTTTAATCTTAACGTTTTCTAATTTTAAAATTTTAAAATCT
 961 TGTTTAACAAAAGCTTGTATTAAGATACTGTTTTCATTTCATTACAGAATTGTTTATAAAAGTTCATTTGTTGAAAAATA
1041 AGGATCCTTTTTAATACCACAGCATTTGTACTGTTCCTTTTTAATATACTGAAAATATAAAAGGAAGGGTGTGTGTTATT
1121 TTTTTTTTTTTATGTCACTGACTTCAGAGACATTGTACACAAAGAATTAACATACTTTTATTCACTGATTGCCTGCTGTT
1201 TAGAATATCAGTTCTTTAATTTTGAGCATCCTGAAATACATCTTTTGTACATATAGAGCATGATGTTTCACAATCAGATT
1281 TTCAGTGACCCCTCGATTATAGCTTGGAGTACTTTAGTTACCCTCAGTGGTCTCTAGGAGTTAAAGTACACTTAGATTTC
1361 CTGTTTATAAATGAATTCAGTTTTTCTGTTTCTAAGTAAATGTAGCTATTCAACTACTCACTATAGAATTAAGATAAACA
1441 ATTTGTTTGCTTAAGCATTTTCACAGAATTTGTTTCCAATGAGATTATTATTTTTGGGTATCTTATCCATATGAAAACTT
1521 AGTAGGTTTGTAGATGTTAACGAAGATTAATACTGCATGTTTGTTTTTGTTTTTTTTTTGAGACAGAGTCTTGCTACGAC
1601 ACCCAGGCTAGAGTGCAATGGCGGGATCTCAGGTCACTGCAACCTCCATATCCCGGGTTCAAGTGATTCTCCTGCCTTAG
1681 CCTCCCGAGTAGCTGGGATTACAGGCACCCACCACCACGCCTGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCAC
1761 CACATTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTACCTTGGCCTACCGAGGTGCTGGAATTACAGG
1841 TGTGAGCCACCGCGCCTGGCCTAATACTGCTTTATTACAACGTTATCTGTGGGTCGGATCCTTTTATATTGGTTAACAGA
1921 TGACCCTGACTCAGAATAATCTTTTTCAATGGCTTTTTGAGGGAAGCTTGTGAAGTTCTGGTGAATCTTCTTTTTCACTT
2001 CACTTTCAGTGAGCTGAAAGTAACCAAACTAAATACATGTATTGTGTAAAGGGACAGGACAAGACAGCCTTAAAAAATTG
2081 AATATAGTTGGTGAGACAACTCAGAAGTACAGGTTTGAGCATCCCTTATTCAAAATGCTTGAGAAGTGTTTTGGGTTCTG
2161 GAATATTTGCATTAATGCTTGCCAGTTGAGCATCCCAGGTCCGGAAATCCACAGTGCTCCAATGAGCCTTTCCCCTGAGT
2241 GTCACATCTGTATTGGCACTCAAAAAGTTTCATATTTTGGAGCATTTCAGATTTCAGATTTGGGATGCTTCATCTATATT
2321 GACAGCTGCAAGAACAGAAAGGAAGAAGAGATTATTTTTGTGGGAGAACAGTTTCTCCCATAGTGTTTCCTGTGGAATGC
2401 TAGTGTCTCATAAAGTCTTCTAAAAAAAAGAAAAAAAAAATCAAATGTTTGGAAGCCATTTTGTGTTACTGTGTGACTTT
2481 CTTTTACTCAAAAACAGCACCATAAAATTTCTGACAAGTACTATAGGTAAAGAAATCCCTTTATACTTAACCTAGTATTT
2561 TCTACCTTTCCCCATCTAAAATAAAATTTTTATACCACTTTCTAATTATGTTGTGTGTGCCCACTTTCCCCATACCTACT
2641 GCTACCATCTTAGAGTAGGCAATTTTCTCAAGAGGATTATTCCAAGAACACCCTAATGTTTTCCTGCTTCCAGTCTTCTT
2721 TCCTCAAATTTATTCCACACTCTTAAGAATTGAAGATGTAAATCTGTCACTCGCCTGAATAAAGCTTCAGTGGCCTCTGA
2801 CTT
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ccUUUGUCCUUUUUUGUAa 5'
            || ||  |:||||||| 
Target 5' tgAATCA--AGAAAACATc 3'
 342 - 358 153.00 -5.50
2 
miRNA  3' ccuuuGUCCUU---UUUUGUAa 5'
               ||||||   ||||:|| 
Target 5' tcactCAGGAAGTTAAAATATc 3'
 628 - 649 142.00 -8.80
3 
miRNA  3' ccUUUGUCCUUUUUUGUaa 5'
            ::|||||| ||:|||  
Target 5' agGGACAGGACAAGACAgc 3'
 2050 - 2068 133.00 -16.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30475376 30 COSMIC
COSN17182090 38 COSMIC
COSN30500441 53 COSMIC
COSN30520238 63 COSMIC
COSN31519437 155 COSMIC
COSN31551443 243 COSMIC
COSN31568000 494 COSMIC
COSN31588811 694 COSMIC
COSN5895534 815 COSMIC
COSN23304279 826 COSMIC
COSN27201096 1132 COSMIC
COSN1514704 1241 COSMIC
COSN21536734 1295 COSMIC
COSN8732861 1324 COSMIC
COSN19029746 1423 COSMIC
COSN16424222 1501 COSMIC
COSN6986326 1926 COSMIC
COSN21613858 2650 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1377374099 1 dbSNP
rs1334507486 5 dbSNP
rs759112731 8 dbSNP
rs1291640120 9 dbSNP
rs771742271 10 dbSNP
rs1334421726 14 dbSNP
rs754113563 15 dbSNP
rs376509824 27 dbSNP
rs555698382 35 dbSNP
rs1270139683 36 dbSNP
rs764390303 38 dbSNP
rs1215014186 43 dbSNP
rs747561804 48 dbSNP
rs777222275 53 dbSNP
rs1326934559 59 dbSNP
rs1370487209 62 dbSNP
rs1461230576 62 dbSNP
rs1172082969 67 dbSNP
rs1410098884 74 dbSNP
rs575674158 82 dbSNP
rs1307919645 84 dbSNP
rs771544792 109 dbSNP
rs544674673 115 dbSNP
rs563511786 124 dbSNP
rs1253525432 125 dbSNP
rs1192822172 146 dbSNP
rs982540562 149 dbSNP
rs1467669572 161 dbSNP
rs1332712619 162 dbSNP
rs757663369 163 dbSNP
rs965929785 169 dbSNP
rs975656501 178 dbSNP
rs1304765928 189 dbSNP
rs1304411092 191 dbSNP
rs1341938769 195 dbSNP
rs1440715651 222 dbSNP
rs1233654876 224 dbSNP
rs1369218115 227 dbSNP
rs921545795 236 dbSNP
rs1272344905 239 dbSNP
rs754006158 253 dbSNP
rs936682145 257 dbSNP
rs532340098 258 dbSNP
rs1395690682 259 dbSNP
rs757075095 259 dbSNP
rs1252320704 264 dbSNP
rs545972700 267 dbSNP
rs1179199481 276 dbSNP
rs559692817 281 dbSNP
rs1194189054 282 dbSNP
rs945435056 284 dbSNP
rs1046484303 287 dbSNP
rs906997644 288 dbSNP
rs1281737583 295 dbSNP
rs1234125075 302 dbSNP
rs1003128640 308 dbSNP
rs1309544185 311 dbSNP
rs1055710318 325 dbSNP
rs372287494 326 dbSNP
rs1372208774 335 dbSNP
rs1296093956 339 dbSNP
rs1416156540 344 dbSNP
rs1375464150 360 dbSNP
rs10790007 363 dbSNP
rs1479053708 364 dbSNP
rs1365343974 366 dbSNP
rs1159619847 372 dbSNP
rs1418252385 388 dbSNP
rs1407617812 389 dbSNP
rs995155845 418 dbSNP
rs1171722821 426 dbSNP
rs1026619998 428 dbSNP
rs1210828902 435 dbSNP
rs1393481951 438 dbSNP
rs1482591221 442 dbSNP
rs1354543485 446 dbSNP
rs951044051 447 dbSNP
rs1240298642 448 dbSNP
rs1316688584 459 dbSNP
rs1003923451 461 dbSNP
rs1461019259 470 dbSNP
rs1355573622 474 dbSNP
rs1295997725 478 dbSNP
rs1019789831 479 dbSNP
rs1387094974 481 dbSNP
rs1289370654 485 dbSNP
rs1452863351 486 dbSNP
rs182716508 494 dbSNP
rs976025418 497 dbSNP
rs1476282725 498 dbSNP
rs921508340 525 dbSNP
rs1415053099 527 dbSNP
rs765935194 528 dbSNP
rs150336085 534 dbSNP
rs989704154 541 dbSNP
rs1353316531 544 dbSNP
rs1485749986 552 dbSNP
rs1266585599 562 dbSNP
rs1220308000 564 dbSNP
rs913881870 573 dbSNP
rs1335128757 577 dbSNP
rs1296166519 593 dbSNP
rs187324544 614 dbSNP
rs191775825 622 dbSNP
rs1327666138 623 dbSNP
rs1202462881 642 dbSNP
rs1257864587 655 dbSNP
rs570756702 656 dbSNP
rs928074907 658 dbSNP
rs1210450407 662 dbSNP
rs1362805462 670 dbSNP
rs1340096221 679 dbSNP
rs1255750012 682 dbSNP
rs938528258 690 dbSNP
rs1164466932 697 dbSNP
rs1489475464 698 dbSNP
rs1056060756 702 dbSNP
rs539649343 706 dbSNP
rs1194562754 707 dbSNP
rs1187513951 712 dbSNP
rs745853038 717 dbSNP
rs894320474 718 dbSNP
rs1469182865 728 dbSNP
rs1272215427 735 dbSNP
rs1207638805 736 dbSNP
rs1340863468 751 dbSNP
rs1251342555 759 dbSNP
rs1226031899 764 dbSNP
rs184595306 765 dbSNP
rs1340022270 766 dbSNP
rs1427284306 776 dbSNP
rs995397025 781 dbSNP
rs1167655514 785 dbSNP
rs1369904137 794 dbSNP
rs566839941 796 dbSNP
rs886739016 804 dbSNP
rs1398760525 806 dbSNP
rs187549255 807 dbSNP
rs1168614075 808 dbSNP
rs1429148171 809 dbSNP
rs1388928573 810 dbSNP
rs1311890222 811 dbSNP
rs1373280350 812 dbSNP
rs1454991903 819 dbSNP
rs1252690902 822 dbSNP
rs137985646 823 dbSNP
rs1003913620 831 dbSNP
rs1250755843 831 dbSNP
rs758764430 831 dbSNP
rs900941864 832 dbSNP
rs575581288 845 dbSNP
rs1234854534 854 dbSNP
rs1028881035 856 dbSNP
rs1272810878 858 dbSNP
rs149447587 859 dbSNP
rs536381090 862 dbSNP
rs1361133186 870 dbSNP
rs958218819 871 dbSNP
rs1360202538 872 dbSNP
rs770005933 873 dbSNP
rs1368721976 874 dbSNP
rs1315358908 879 dbSNP
rs1435839710 883 dbSNP
rs193268872 886 dbSNP
rs1171233923 889 dbSNP
rs1021171664 894 dbSNP
rs775222263 901 dbSNP
rs1180578307 905 dbSNP
rs778357226 919 dbSNP
rs762445291 933 dbSNP
rs1258961016 934 dbSNP
rs752062165 938 dbSNP
rs1348664947 939 dbSNP
rs1276374873 943 dbSNP
rs966667040 946 dbSNP
rs185442231 947 dbSNP
rs1280370563 953 dbSNP
rs1227943619 956 dbSNP
rs1348739932 961 dbSNP
rs1295150049 964 dbSNP
rs1415451249 973 dbSNP
rs373246780 974 dbSNP
rs928065702 987 dbSNP
rs1356185153 992 dbSNP
rs938062765 997 dbSNP
rs1402821698 999 dbSNP
rs990925234 1009 dbSNP
rs915725734 1010 dbSNP
rs1419546873 1016 dbSNP
rs1471380323 1016 dbSNP
rs1188090928 1018 dbSNP
rs931148827 1020 dbSNP
rs1235719737 1024 dbSNP
rs559431866 1026 dbSNP
rs1447367647 1037 dbSNP
rs1283245085 1039 dbSNP
rs1193440291 1040 dbSNP
rs1254252351 1042 dbSNP
rs887048011 1043 dbSNP
rs1327403581 1044 dbSNP
rs939665353 1061 dbSNP
rs1392823385 1069 dbSNP
rs1378456510 1072 dbSNP
rs1041144131 1075 dbSNP
rs1433458145 1083 dbSNP
rs479717 1093 dbSNP
rs1327413536 1099 dbSNP
rs376513279 1100 dbSNP
rs1159475773 1101 dbSNP
rs996961606 1104 dbSNP
rs1165175457 1109 dbSNP
rs1396303535 1109 dbSNP
rs1404253515 1114 dbSNP
rs1028090025 1116 dbSNP
rs1247317873 1116 dbSNP
rs893946466 1116 dbSNP
rs1011057170 1117 dbSNP
rs1186485141 1117 dbSNP
rs1428447210 1118 dbSNP
rs1216385501 1119 dbSNP
rs1287758341 1119 dbSNP
rs534414948 1119 dbSNP
rs966056210 1119 dbSNP
rs976565261 1120 dbSNP
rs1021142355 1124 dbSNP
rs1029102542 1126 dbSNP
rs1297499250 1127 dbSNP
rs77234077 1131 dbSNP
rs1433417004 1132 dbSNP
rs1371695171 1133 dbSNP
rs1440238313 1135 dbSNP
rs1326171239 1139 dbSNP
rs1435258498 1146 dbSNP
rs953990424 1148 dbSNP
rs982124438 1155 dbSNP
rs572023267 1159 dbSNP
rs1301372079 1160 dbSNP
rs1035396445 1173 dbSNP
rs985325165 1174 dbSNP
rs1455426425 1182 dbSNP
rs925830096 1185 dbSNP
rs1192021114 1187 dbSNP
rs959420964 1192 dbSNP
rs1245174941 1199 dbSNP
rs755643477 1205 dbSNP
rs1283931620 1206 dbSNP
rs11214981 1210 dbSNP
rs912896982 1213 dbSNP
rs1226746195 1215 dbSNP
rs190249178 1229 dbSNP
rs1218983394 1232 dbSNP
rs548110274 1232 dbSNP
rs1045871116 1238 dbSNP
rs181392388 1241 dbSNP
rs648642 1247 dbSNP
rs937475586 1248 dbSNP
rs1299520631 1253 dbSNP
rs1442319045 1255 dbSNP
rs1250600721 1258 dbSNP
rs1369327913 1259 dbSNP
rs1049235352 1261 dbSNP
rs887989885 1272 dbSNP
rs573079844 1274 dbSNP
rs1177408926 1286 dbSNP
rs1005088582 1291 dbSNP
rs1398711742 1295 dbSNP
rs542090932 1296 dbSNP
rs939898846 1301 dbSNP
rs481649 1306 dbSNP
rs184295929 1310 dbSNP
rs1395068170 1318 dbSNP
rs1036606845 1324 dbSNP
rs1431228334 1326 dbSNP
rs1423391357 1330 dbSNP
rs1179104858 1335 dbSNP
rs1472960148 1340 dbSNP
rs1460885976 1347 dbSNP
rs901833595 1352 dbSNP
rs900811024 1353 dbSNP
rs80217394 1355 dbSNP
rs1257067976 1373 dbSNP
rs1049928817 1376 dbSNP
rs893579784 1379 dbSNP
rs1029464121 1396 dbSNP
rs1371512852 1402 dbSNP
rs953497346 1405 dbSNP
rs1285970507 1406 dbSNP
rs1042565551 1409 dbSNP
rs1376072835 1411 dbSNP
rs1302182455 1424 dbSNP
rs550112854 1425 dbSNP
rs1464364994 1436 dbSNP
rs1346670908 1437 dbSNP
rs1161589884 1440 dbSNP
rs902695302 1442 dbSNP
rs1294321707 1446 dbSNP
rs1004181518 1457 dbSNP
rs1007097989 1468 dbSNP
rs145945092 1478 dbSNP
rs1035292880 1480 dbSNP
rs1181719641 1484 dbSNP
rs1482499871 1487 dbSNP
rs139002162 1495 dbSNP
rs188720727 1496 dbSNP
rs1260606459 1503 dbSNP
rs1027738644 1519 dbSNP
rs750283998 1520 dbSNP
rs952142537 1521 dbSNP
rs988716255 1522 dbSNP
rs1340483399 1525 dbSNP
rs1311922778 1527 dbSNP
rs1394173929 1531 dbSNP
rs1439034707 1532 dbSNP
rs1363839087 1542 dbSNP
rs566705102 1545 dbSNP
rs1321032234 1550 dbSNP
rs1421700406 1553 dbSNP
rs1456479346 1554 dbSNP
rs1350197841 1558 dbSNP
rs1204659383 1560 dbSNP
rs1388265803 1564 dbSNP
rs913173615 1564 dbSNP
rs1157201885 1566 dbSNP
rs142443099 1566 dbSNP
rs58001251 1566 dbSNP
rs67779902 1567 dbSNP
rs1189692395 1570 dbSNP
rs386374969 1570 dbSNP
rs971025819 1570 dbSNP
rs1464721255 1571 dbSNP
rs111294245 1574 dbSNP
rs115841138 1578 dbSNP
rs908336930 1583 dbSNP
rs1189755308 1595 dbSNP
rs937108866 1597 dbSNP
rs867521913 1599 dbSNP
rs1298236246 1606 dbSNP
rs1434168020 1613 dbSNP
rs1362693033 1617 dbSNP
rs543215821 1619 dbSNP
rs142281711 1623 dbSNP
rs940890792 1624 dbSNP
rs569204168 1627 dbSNP
rs1162686920 1629 dbSNP
rs932288966 1631 dbSNP
rs1398631802 1640 dbSNP
rs1049422780 1641 dbSNP
rs1375348850 1645 dbSNP
rs1410581762 1649 dbSNP
rs1169724657 1652 dbSNP
rs1328295910 1654 dbSNP
rs766024969 1655 dbSNP
rs538246040 1656 dbSNP
rs1451870757 1657 dbSNP
rs1294224025 1661 dbSNP
rs181102102 1662 dbSNP
rs1231913758 1672 dbSNP
rs1481320142 1673 dbSNP
rs578157737 1679 dbSNP
rs1227523474 1681 dbSNP
rs997892638 1687 dbSNP
rs113416602 1688 dbSNP
rs1233667292 1703 dbSNP
rs1340748352 1704 dbSNP
rs534261558 1709 dbSNP
rs1050452505 1714 dbSNP
rs753033650 1719 dbSNP
rs545676273 1720 dbSNP
rs1309201116 1726 dbSNP
rs1429616643 1729 dbSNP
rs902653380 1729 dbSNP
rs1271721446 1732 dbSNP
rs1478557294 1737 dbSNP
rs1000951812 1750 dbSNP
rs1376771789 1754 dbSNP
rs1032459080 1763 dbSNP
rs780042988 1780 dbSNP
rs1003745383 1788 dbSNP
rs957175915 1801 dbSNP
rs1203785323 1803 dbSNP
rs1010089336 1804 dbSNP
rs1481831867 1806 dbSNP
rs1212597314 1807 dbSNP
rs553238571 1812 dbSNP
rs1200885060 1817 dbSNP
rs1343963269 1822 dbSNP
rs1257863231 1823 dbSNP
rs1231278475 1824 dbSNP
rs572984522 1826 dbSNP
rs541803713 1831 dbSNP
rs758683635 1839 dbSNP
rs1409248548 1847 dbSNP
rs111956479 1852 dbSNP
rs1374674992 1853 dbSNP
rs1034015910 1854 dbSNP
rs575409533 1855 dbSNP
rs71465288 1858 dbSNP
rs1167339767 1868 dbSNP
rs1458534799 1878 dbSNP
rs543821890 1878 dbSNP
rs952028315 1882 dbSNP
rs1004947073 1896 dbSNP
rs1436721880 1899 dbSNP
rs1015028587 1900 dbSNP
rs961488745 1907 dbSNP
rs747055681 1922 dbSNP
rs1441659924 1925 dbSNP
rs563711536 1930 dbSNP
rs749387153 1947 dbSNP
rs768680061 1950 dbSNP
rs1413301214 1969 dbSNP
rs1331542936 1971 dbSNP
rs781734041 1982 dbSNP
rs972214557 1985 dbSNP
rs1327494842 1988 dbSNP
rs1348650174 1999 dbSNP
rs1286475379 2002 dbSNP
rs923486652 2009 dbSNP
rs1269021285 2010 dbSNP
rs1332653874 2021 dbSNP
rs1388994185 2031 dbSNP
rs1157880030 2036 dbSNP
rs774343809 2037 dbSNP
rs985349094 2041 dbSNP
rs1235945976 2046 dbSNP
rs1163788723 2049 dbSNP
rs1472457294 2058 dbSNP
rs914868628 2060 dbSNP
rs866742027 2061 dbSNP
rs1190352950 2067 dbSNP
rs933586095 2084 dbSNP
rs1346728240 2090 dbSNP
rs1051153007 2092 dbSNP
rs1198471729 2098 dbSNP
rs12279446 2105 dbSNP
rs1465173986 2108 dbSNP
rs889111864 2115 dbSNP
rs1208272840 2123 dbSNP
rs1327204058 2128 dbSNP
rs536596554 2129 dbSNP
rs923739121 2137 dbSNP
rs1192362125 2142 dbSNP
rs1053844690 2148 dbSNP
rs1282928672 2149 dbSNP
rs1231090544 2155 dbSNP
rs892565168 2176 dbSNP
rs532891832 2177 dbSNP
rs1319505477 2182 dbSNP
rs1056669091 2186 dbSNP
rs546277630 2190 dbSNP
rs948246507 2196 dbSNP
rs1299107358 2198 dbSNP
rs1404240171 2200 dbSNP
rs1020130466 2203 dbSNP
rs887748116 2204 dbSNP
rs1160595339 2210 dbSNP
rs13725 2213 dbSNP
rs1002783140 2218 dbSNP
rs1188190559 2222 dbSNP
rs748996207 2223 dbSNP
rs1222476452 2224 dbSNP
rs1034708077 2227 dbSNP
rs958380092 2228 dbSNP
rs1316843677 2235 dbSNP
rs1373881535 2239 dbSNP
rs1442403833 2240 dbSNP
rs1226614803 2244 dbSNP
rs9326243 2247 dbSNP
rs1369704050 2251 dbSNP
rs1230625682 2255 dbSNP
rs1275064269 2256 dbSNP
rs1435150606 2257 dbSNP
rs372849206 2259 dbSNP
rs1309812008 2268 dbSNP
rs1430273872 2270 dbSNP
rs1369841367 2273 dbSNP
rs1166554422 2274 dbSNP
rs1434672805 2295 dbSNP
rs961772740 2296 dbSNP
rs954013417 2304 dbSNP
rs773160579 2310 dbSNP
rs985317742 2317 dbSNP
rs1477756031 2319 dbSNP
rs1204371626 2320 dbSNP
rs761340727 2329 dbSNP
rs766960963 2330 dbSNP
rs1469786642 2332 dbSNP
rs773210661 2335 dbSNP
rs1207347210 2338 dbSNP
rs1483693788 2352 dbSNP
rs1274550819 2354 dbSNP
rs186209618 2356 dbSNP
rs1314253281 2361 dbSNP
rs967671824 2369 dbSNP
rs933516196 2370 dbSNP
rs1054777 2375 dbSNP
rs977768173 2376 dbSNP
rs1364907259 2379 dbSNP
rs1289732445 2380 dbSNP
rs986383086 2389 dbSNP
rs1252459598 2390 dbSNP
rs939082365 2393 dbSNP
rs1306045726 2396 dbSNP
rs1467393964 2398 dbSNP
rs910815737 2400 dbSNP
rs992320541 2407 dbSNP
rs1414166723 2408 dbSNP
rs1184234470 2412 dbSNP
rs1364667919 2421 dbSNP
rs1133487 2422 dbSNP
rs1427417526 2422 dbSNP
rs936654413 2423 dbSNP
rs200210940 2430 dbSNP
rs11407769 2431 dbSNP
rs1175925724 2431 dbSNP
rs1484461634 2431 dbSNP
rs397725545 2431 dbSNP
rs77707557 2431 dbSNP
rs1256906536 2437 dbSNP
rs1053793307 2438 dbSNP
rs1209828264 2449 dbSNP
rs916731048 2453 dbSNP
rs892513003 2464 dbSNP
rs569547901 2465 dbSNP
rs1228483842 2466 dbSNP
rs538127176 2466 dbSNP
rs948215325 2470 dbSNP
rs945439562 2473 dbSNP
rs1327788602 2482 dbSNP
rs1304822500 2496 dbSNP
rs1397659641 2498 dbSNP
rs1157243835 2505 dbSNP
rs1049328160 2507 dbSNP
rs1445541670 2513 dbSNP
rs1404265215 2519 dbSNP
rs868694101 2523 dbSNP
rs1161573669 2524 dbSNP
rs1457843196 2533 dbSNP
rs535722 2544 dbSNP
rs1462429021 2553 dbSNP
rs940668743 2558 dbSNP
rs868112291 2562 dbSNP
rs571649663 2565 dbSNP
rs534331058 2567 dbSNP
rs1325925556 2571 dbSNP
rs138262296 2574 dbSNP
rs901847714 2576 dbSNP
rs1384635833 2587 dbSNP
rs997568329 2599 dbSNP
rs190681770 2609 dbSNP
rs907022103 2616 dbSNP
rs146360837 2618 dbSNP
rs535647338 2620 dbSNP
rs1006704335 2622 dbSNP
rs1243522852 2625 dbSNP
rs1367013349 2630 dbSNP
rs75472325 2634 dbSNP
rs1436029930 2636 dbSNP
rs1005803524 2638 dbSNP
rs1015880003 2640 dbSNP
rs148571476 2647 dbSNP
rs544080165 2649 dbSNP
rs1164606242 2658 dbSNP
rs1030627974 2659 dbSNP
rs993197135 2663 dbSNP
rs1487544620 2670 dbSNP
rs1464188874 2672 dbSNP
rs1259224566 2673 dbSNP
rs991893517 2678 dbSNP
rs10502184 2679 dbSNP
rs1264801744 2685 dbSNP
rs954879960 2698 dbSNP
rs1251489408 2706 dbSNP
rs948183079 2709 dbSNP
rs1298130245 2716 dbSNP
rs182417944 2724 dbSNP
rs1326139457 2728 dbSNP
rs910773755 2733 dbSNP
rs751784371 2738 dbSNP
rs989771183 2740 dbSNP
rs560581041 2742 dbSNP
rs1391490547 2743 dbSNP
rs1303102283 2745 dbSNP
rs1475771546 2746 dbSNP
rs1423346937 2748 dbSNP
rs913897751 2750 dbSNP
rs1037022652 2757 dbSNP
rs1169695198 2759 dbSNP
rs1449223935 2771 dbSNP
rs557960769 2773 dbSNP
rs1433298846 2774 dbSNP
rs574346402 2774 dbSNP
rs1367273434 2780 dbSNP
rs560198470 2789 dbSNP
rs1299403062 2791 dbSNP
rs1396725169 2800 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM4903825
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / PID14_NS
Location of target site NM_016090 | 3UTR | AAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161237
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_016090 | 3UTR | UUUAGGAGGGGGUGAAGUUGUAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_016090 | 3UTR | CUUUAGGAGGGGGUGAAGUUGUAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_016090 | 3UTR | UAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_016090 | 3UTR | GGAGGGGGUGAAGUUGUAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_016090 | 3UTR | UUGUAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_016090 | 3UTR | UGAAGUUGUAUGAUAAAGCAGAUAUUUUAAUUAUUUGUUAUCUUUUUGUAUUGCAAGAAAUUUCUUGCUAGUGAAUCAAGAAAACAUCCAGG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000540163.1 | 3UTR | UCAAGAAAACAUCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
107 hsa-miR-4307 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT091681 RARB retinoic acid receptor beta 2 6
MIRT097311 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT099878 SOX4 SRY-box 4 2 2
MIRT114514 ARF6 ADP ribosylation factor 6 2 2
MIRT163479 WNT5A Wnt family member 5A 2 2
MIRT186633 COX20 COX20, cytochrome c oxidase assembly factor 2 8
MIRT194921 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT230189 AKAP17A A-kinase anchoring protein 17A 2 2
MIRT281397 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT328018 RLIM ring finger protein, LIM domain interacting 2 2
MIRT354896 SEC62 SEC62 homolog, preprotein translocation factor 2 2
MIRT361422 PNRC1 proline rich nuclear receptor coactivator 1 2 2
MIRT442526 MOB3B MOB kinase activator 3B 2 2
MIRT442629 NUDT12 nudix hydrolase 12 2 2
MIRT442685 SLC39A9 solute carrier family 39 member 9 2 2
MIRT444131 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444174 RBM7 RNA binding motif protein 7 2 2
MIRT446045 TPR translocated promoter region, nuclear basket protein 2 2
MIRT447984 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT460527 S100A11 S100 calcium binding protein A11 2 4
MIRT466861 STX6 syntaxin 6 2 2
MIRT468806 SAP18 Sin3A associated protein 18 2 6
MIRT480269 C8orf4 chromosome 8 open reading frame 4 2 2
MIRT493119 MKNK2 MAP kinase interacting serine/threonine kinase 2 2 6
MIRT499168 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 8
MIRT500507 ZBTB34 zinc finger and BTB domain containing 34 2 2
MIRT503021 CAND1 cullin associated and neddylation dissociated 1 2 2
MIRT505314 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT506123 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 2 8
MIRT509346 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 4
MIRT509446 POU2F2 POU class 2 homeobox 2 2 6
MIRT509598 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT516008 GPN2 GPN-loop GTPase 2 2 2
MIRT516120 SRPX2 sushi repeat containing protein, X-linked 2 2 4
MIRT522126 NELL2 neural EGFL like 2 2 2
MIRT523018 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 4
MIRT524015 DONSON downstream neighbor of SON 2 2
MIRT526307 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526789 SGCD sarcoglycan delta 2 2
MIRT529141 CLCC1 chloride channel CLIC like 1 2 2
MIRT531336 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 2 2
MIRT531573 ILDR1 immunoglobulin like domain containing receptor 1 2 2
MIRT531831 MTPAP mitochondrial poly(A) polymerase 2 2
MIRT534994 PRR11 proline rich 11 2 6
MIRT535419 PDZD8 PDZ domain containing 8 2 2
MIRT535534 PAK2 p21 (RAC1) activated kinase 2 2 2
MIRT536649 INIP INTS3 and NABP interacting protein 2 2
MIRT543498 MDM2 MDM2 proto-oncogene 2 4
MIRT545392 PM20D2 peptidase M20 domain containing 2 2 2
MIRT545881 ZNF200 zinc finger protein 200 2 4
MIRT547931 HNRNPR heterogeneous nuclear ribonucleoprotein R 2 2
MIRT548109 GDAP2 ganglioside induced differentiation associated protein 2 2 2
MIRT549370 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A 2 2
MIRT549934 RPL7L1 ribosomal protein L7 like 1 2 4
MIRT550455 MYADM myeloid associated differentiation marker 2 4
MIRT550640 AR androgen receptor 2 2
MIRT550815 FAM229B family with sequence similarity 229 member B 2 2
MIRT551258 OPCML opioid binding protein/cell adhesion molecule like 2 2
MIRT551768 MED21 mediator complex subunit 21 2 2
MIRT552214 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT555472 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT556008 MZT1 mitotic spindle organizing protein 1 2 2
MIRT557878 FEM1B fem-1 homolog B 2 4
MIRT558486 DBN1 drebrin 1 2 2
MIRT560859 GAL3ST3 galactose-3-O-sulfotransferase 3 2 2
MIRT561521 AZF1 azoospermia factor 1 2 2
MIRT562090 KIAA0895 KIAA0895 2 2
MIRT563065 ZNF28 zinc finger protein 28 2 2
MIRT563487 ZWINT ZW10 interacting kinetochore protein 2 2
MIRT564286 CTCF CCCTC-binding factor 2 2
MIRT565627 SLC16A1 solute carrier family 16 member 1 2 2
MIRT566508 PAWR pro-apoptotic WT1 regulator 2 2
MIRT566978 LBR lamin B receptor 2 2
MIRT567180 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT568432 GDNF glial cell derived neurotrophic factor 2 2
MIRT570092 KANSL1L KAT8 regulatory NSL complex subunit 1 like 2 2
MIRT570565 PABPC1 poly(A) binding protein cytoplasmic 1 2 2
MIRT571385 JKAMP JNK1/MAPK8-associated membrane protein 2 2
MIRT572053 GPATCH8 G-patch domain containing 8 2 2
MIRT572333 CACNA1A calcium voltage-gated channel subunit alpha1 A 2 2
MIRT574528 PEG10 paternally expressed 10 2 2
MIRT575818 Igfbp4 insulin-like growth factor binding protein 4 2 2
MIRT608587 PPP2R1B protein phosphatase 2 scaffold subunit Abeta 2 4
MIRT610442 TSPAN15 tetraspanin 15 2 2
MIRT614994 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT615014 ERGIC2 ERGIC and golgi 2 2 2
MIRT615078 CISD3 CDGSH iron sulfur domain 3 2 2
MIRT616180 SYT7 synaptotagmin 7 2 2
MIRT617191 CDH13 cadherin 13 2 2
MIRT617287 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT618714 ESD esterase D 2 2
MIRT621825 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT624139 DLX3 distal-less homeobox 3 2 2
MIRT625991 IBA57 IBA57 homolog, iron-sulfur cluster assembly 2 2
MIRT626344 BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 2 2
MIRT634899 ZNF701 zinc finger protein 701 2 2
MIRT637848 SLC2A9 solute carrier family 2 member 9 2 2
MIRT639514 FYB FYN binding protein 1 2 2
MIRT642468 RSL1D1 ribosomal L1 domain containing 1 2 2
MIRT653670 SLC26A7 solute carrier family 26 member 7 2 2
MIRT655192 PHAX phosphorylated adaptor for RNA export 2 2
MIRT657011 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 2 2
MIRT661008 ABCB11 ATP binding cassette subfamily B member 11 2 2
MIRT665816 TMEM161B transmembrane protein 161B 2 2
MIRT683852 ZNF208 zinc finger protein 208 2 2
MIRT700436 PURB purine rich element binding protein B 2 2
MIRT700517 PTPN14 protein tyrosine phosphatase, non-receptor type 14 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4307 Tripterygium wilfordii Hook F resistant tissue
hsa-miR-4307 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4307 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4307 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide/Methotrexate/Gemcitabine sensitive cell line (Bats-72)

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