miRTarBase - #MIRT444416


—
pre-miRNA Information
pre-miRNA hsa-mir-4731   
Genomic Coordinates chr17: 15251627 - 15251696
Description Homo sapiens miR-4731 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4731-5p
Sequence 10| UGCUGGGGGCCACAUGAGUGUG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1295173963 9 dbSNP
rs1227560397 15 dbSNP
rs972231157 18 dbSNP
Putative Targets

Gene Information
Gene Symbol EMC1   
Synonyms CAVIPMR, KIAA0090
Description ER membrane protein complex subunit 1
Transcript NM_015047   
Expression
Putative miRNA Targets on EMC1
3'UTR of EMC1
(miRNA target sites are highlighted)		 
>EMC1|NM_015047|3'UTR
   1 AGAACAAAGACTGTGCCTAAAAGTGGAGAGCCAGGGGAGTGTGGGTCAGATAAGCAGCTACAGCTGCAGTTTGGTGGATT
  81 GGTGGAGTATGTGTGTGTGTCAGTGCTCAGCTAAGAACTGTAGGGAAGATGGATGACCTTCACGCAGAACTCCTTTTGGG
 161 ATATACATGATGCAGAAAGGATCCTACATGGAGAGAGACAGAACTCTCTCAGCTGACACTCTCAGAGATTCCTGATGGGC
 241 TTTCTCTTGAAGTCCAAAGGCGTCTGCATTGTTTCCTTTCTTTGCCCATCCATGAATGTTCTGTTTTGTTTTTTTTAATA
 321 AGAATTCCGGCTGATTTTTGTGAGGCCTGTTTAAATTGACTTTACTTTGCCTTTTGTGTTTCTCAATTTTATCTAGAAAT
 401 CTTTCTGACTTTTTCCATCTCTTGCTTCAAAGTAAGAGGGGAACTCTCCTTGCCGACTCCACCTTATAGGTACATTTGGT
 481 GTTTTGCACTGGGAAGAAATAGGATCCATCCTTAGCTGAGGCTTGAGGACTGATCCAGCCTCTCATGGCTTCCCTCCAAA
 561 GTAACTTAGGGTTGAGGGATCTATATGTGATGTCAAAACTTACTTTAAACCTCTAGTTTCGTGCTGTCATTTATTAGGCT
 641 GGGCCACCAAATCTTTGTTTCAATTTATCAGAAGCCAAGTGCATACTAGCGTCTTGTTTGTTGCCCATTGCCTATACTTT
 721 TCACCTGAGATGTGTGAGTTGGGGCCTTTTAAAAACTACTGAATTGTCTGAGCCTTGAAGACATTTCCAGGGAGAAGAGA
 801 TAATCTCTCATTTCACCCACAGGCTGGTCTAATCATAACCTAGTTAAAGATGTCCTTGTTTAAGAACCCCATTATTTATT
 881 TTTAGTTTTTAATATAAATTAACATGTGGGTCATTATATTTCTCCTTAAATGAGGAAATTTTAAATTTTATTGATCTAAC
 961 CTTTGAAGCTTTAAAAAAGGAGAAAGAGGGTAGGGGTGGGAAACTGGCATACTGTGTGTATAGCACTGCCGATTGGCTAG
1041 GCCACTGTGTCTCTGCTACAAATTAAAGAAATCCTAAAAGTTTTCCTTGGTCATAGAGTTGGGGAATGACAGAATTTTTC
1121 TTTGTTGTGAAATGTATGTACAGAGTAGACCATCTCTAGCCCTGTGGTGAAAGAGGTACACTCGAATGTTTGCATAAAGC
1201 AAGTGACAAATGACACTGTTTAAGTCCTCTTTTGTGTCTTAGAAGATCATTTTGAGGCTATTTTCACATTAGAGGGGATA
1281 AAAGCAGTGAAGACATGGAGTAAGTGTATTTTATTTTAGTAAGGAAAGGTCAGTTTAATCATATATGGGTTGGTTAGGTT
1361 ATCTAAAAATTTGTCATCTTTCTATGGTCATATGCTGATGGTAGATTATGGCAGAGAAGGAAGAGGAAATGACAACCATT
1441 TTATTAATTGTCAGTTTGATATTGAGTGACTGAATGTCTAAGAATCTCCAGAAAAAAACAGGCATCTATCATCCTGACCC
1521 AAGGCATATTTTAACATAACCTGGGAGAAGAGAGTTAAGTACAAGTTAAAAAAAATTCTGCCCTAGTTTTGAGAAAGCCT
1601 GGCTGGAATTCTGACTGTCTTACATACATATGTGCAAGGTTAGCCTGCAAGATTCTAGTTTTTATTTACCAGTGTGCCAG
1681 AATCTGAAACAAGCTACTGGGAGGGAAGGTATTTGTCCTTTAGTAAAATTCCCTGTATTTCAGCTGTAATCAAAGTTACC
1761 TCAAAGCAGGTGCTTTTTTTTTTTTTGAGACAGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGC
1841 TCACGGCAACCTCCACCTCACAAGCAGCTGGGACTATAGGCATGTGCCACCACGCTCAGCTAATTTTTTGTATTTTTAGT
1921 AGAGACGGGGTTTCATTGTGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATCTGCTGGCCTTGGCCTCCCAAA
2001 GTGCTGGGATTACAGGTGTGAGCCACCGAGCTTGGCCAAGTGCTTAAAATAGTTAATGCTAATGCCACAGTCCAATTTAA
2081 ATCTTTTCTTAGTTCTCAACTTTCCTTAATCTTAAAGCAGCATTCGGTTCTGAGCAGCTACACTCAGTCTCCACTAATGG
2161 CTGCTGAGACTATGTTTCCTCTCTCAATTCTCTGATCTATTTGCTTTCTTGTCATTCCTTGTTTTTTGTGTGTATTCCTT
2241 GACTTACCTCTTCTCCTGTCTTCATTAATTAGGTTAATTTTGGGGCCCCATGGTGTTTCACGTAAAAAGATTTGGCTGGG
2321 CGTGATGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCATAGTGGAGGATCTCTTGAGCCCAGGAGTTCCAGACCAG
2401 CCTGGGCAACATAGCAAGACTCTATCTACAAAAAATAAAAAAAAATTAGCCGGGCCTGGTGGCATGTGCCTGTGGTCCTA
2481 GCTACTCAGGAGGCTGAGGTAGGAGGATCACTTGAGCCTGGGAGGTCGAGGCTGCAGTGAGCCATGAACATGCTACTGCA
2561 TTCCAGCCTGGGCAACAGAGTGAGACCCTGGCTCAAAAACAAAAACAAAAACTAGTTTGTTTTAGTATTCATTAATTACG
2641 TATATGAGCACTGGTAGTCTAGTGTTTGTTCTTGTATACAGTGTTTTCTTAAATGAGATGATGCTATTTAATTCTGTTAC
2721 TTGTTTTTTCAACTAATGGATCTTTTAAAGTTTTTTATTTAAATTTTTTGTGGGTACATATTAGGTACATATACTTATGG
2801 GGTACATGAGATGTTTTTATAAAGGCTCAGCTAATGTATCTTGAATATCATGTATTCATAAAGATGACTGAAATAGTTTC
2881 TGGAACAAAGTCTGATAGAAAAAATACTCAATTCCTAATTTAAGTGTTAGAGACTTTAATGTAAGCTATCTAATCTGAAC
2961 TAGTTTCATTATTTGTGTGTGGGTACATGTTATGTGCTCCGTAAGGCATCTTTCAATTTGAAAATTTCATAATTGTAATT
3041 TCACTGCCTTTATAAATTGCTTTTTTTTTGGAGGCAGGGTCTCTGTCACCCAGGCTGGAGAGCAGTGGCACAGTCATAGC
3121 TCACTGCAGCCTCGAACACCTGGGCTGAAGTGATCCTCCCTCCTTAGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCT
3201 ACTGCACCTGGCCCATAAATTGTCATACTTTTAAAGAGCCTATTACACAAAGTATCATCAGAATCATCCCAAGACTCATT
3281 TCCTGATTCCTAATTATTTAAAATTTTGCTTTTAGGCGAGGCATGGTGGCTCAAGCCTATAATCCCAGCACTTTGGGAGG
3361 CCAAGGCAGGCAGATCATTTGAGGTCAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCTGAAACCCCATCTCTAC
3441 CAAAAAAATAAAAAAATTTAGCCAGGTGTGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAT
3521 CGAACCCAGGAGGCAAAGGCTGCAGTAAGCCGAGATCATGCCTCTGCACTCCAGTCTGGGCAACACAGTGAGACCCTGTC
3601 TCAAAAATAAATAAAATGAAAAAATTGCTTTTAAATCATAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGUGAGUACACCGGGGGUCGu 5'
            ||: | |||   :|||||| 
Target 5' tgCATGCCTGT-AATCCCAGCt 3'
 3475 - 3495 135.00 -15.60
2 
miRNA  3' gugUGAGUAC--A-CCGGGGGUCGu 5'
             :||||||  |    :|||||| 
Target 5' atgGCTCATGCCTATAATCCCAGCa 3'
 2325 - 2349 133.00 -21.10
3 
miRNA  3' gugugaGUACACCGGGGGUCGu 5'
                | ||||| :||:||| 
Target 5' catgtgCCTGTGG-TCCTAGCt 3'
 2463 - 2483 127.00 -17.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30113398 2 COSMIC
COSN26677133 16 COSMIC
COSN30526516 22 COSMIC
COSN30185063 47 COSMIC
COSN30147403 49 COSMIC
COSN26974931 74 COSMIC
COSN28197984 82 COSMIC
COSN28427896 85 COSMIC
COSN31492476 91 COSMIC
COSN2511326 103 COSMIC
COSN1095321 301 COSMIC
COSN20094450 301 COSMIC
COSN6017220 573 COSMIC
COSN16128733 621 COSMIC
COSN21318164 1254 COSMIC
COSN32061389 1774 COSMIC
COSN21427791 2008 COSMIC
COSN6017208 2169 COSMIC
COSN25918322 2845 COSMIC
COSN6017203 3253 COSMIC
COSN24726998 3389 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs766382893 5 dbSNP
rs779004478 8 dbSNP
rs757303314 10 dbSNP
rs1013104242 11 dbSNP
rs753885274 15 dbSNP
rs565114446 19 dbSNP
rs1338688641 20 dbSNP
rs1268285997 22 dbSNP
rs139791356 23 dbSNP
rs1340545967 24 dbSNP
rs376510740 25 dbSNP
rs752680815 26 dbSNP
rs1401973852 32 dbSNP
rs1389849617 35 dbSNP
rs767287847 36 dbSNP
rs1466416109 37 dbSNP
rs1419433137 44 dbSNP
rs1451724888 49 dbSNP
rs759316395 50 dbSNP
rs1453221968 54 dbSNP
rs1200409951 61 dbSNP
rs1482584775 69 dbSNP
rs1253716168 84 dbSNP
rs1034798289 87 dbSNP
rs1212470911 87 dbSNP
rs1348148566 88 dbSNP
rs901595098 91 dbSNP
rs1225822842 96 dbSNP
rs1003194653 97 dbSNP
rs1296152887 101 dbSNP
rs940350853 117 dbSNP
rs1376951592 123 dbSNP
rs1304649738 139 dbSNP
rs572909059 141 dbSNP
rs902223187 143 dbSNP
rs1042296658 144 dbSNP
rs946589384 145 dbSNP
rs1396658146 146 dbSNP
rs867793736 151 dbSNP
rs150785893 157 dbSNP
rs1166931493 165 dbSNP
rs1474241986 167 dbSNP
rs1431965506 172 dbSNP
rs1387418061 183 dbSNP
rs893724710 188 dbSNP
rs535847317 199 dbSNP
rs775633728 206 dbSNP
rs1258962138 208 dbSNP
rs766692190 209 dbSNP
rs747826510 211 dbSNP
rs141420340 218 dbSNP
rs1202624226 231 dbSNP
rs556424736 235 dbSNP
rs1341089365 241 dbSNP
rs1251653764 242 dbSNP
rs1243873042 244 dbSNP
rs1319853164 252 dbSNP
rs532658765 259 dbSNP
rs1035752023 261 dbSNP
rs1415414100 262 dbSNP
rs1207314880 268 dbSNP
rs1349977568 269 dbSNP
rs1306366055 270 dbSNP
rs186924669 275 dbSNP
rs1397551685 284 dbSNP
rs976827622 287 dbSNP
rs570929678 298 dbSNP
rs201296374 301 dbSNP
rs1475224845 304 dbSNP
rs1020320675 306 dbSNP
rs942691737 307 dbSNP
rs1358763908 309 dbSNP
rs71716681 312 dbSNP
rs113921390 313 dbSNP
rs200361810 313 dbSNP
rs370415955 313 dbSNP
rs376452692 317 dbSNP
rs747596116 317 dbSNP
rs372754971 318 dbSNP
rs1246438890 319 dbSNP
rs368641099 320 dbSNP
rs374585558 321 dbSNP
rs908516030 322 dbSNP
rs565288086 328 dbSNP
rs1029534580 330 dbSNP
rs953053560 346 dbSNP
rs1023230969 355 dbSNP
rs992055694 363 dbSNP
rs1323151721 371 dbSNP
rs183005944 378 dbSNP
rs1335796068 399 dbSNP
rs901564035 411 dbSNP
rs1034767859 419 dbSNP
rs1327632074 422 dbSNP
rs1407801151 437 dbSNP
rs1156316178 444 dbSNP
rs1367057103 454 dbSNP
rs1363961396 455 dbSNP
rs772003666 459 dbSNP
rs1431194457 470 dbSNP
rs1040133731 471 dbSNP
rs1214156398 474 dbSNP
rs1163902190 476 dbSNP
rs1464382791 484 dbSNP
rs1003330716 489 dbSNP
rs1206914128 490 dbSNP
rs1424410176 500 dbSNP
rs902268948 500 dbSNP
rs1274441678 503 dbSNP
rs1383830853 504 dbSNP
rs1048728973 512 dbSNP
rs74056793 517 dbSNP
rs10218816 520 dbSNP
rs916521194 540 dbSNP
rs1054857494 545 dbSNP
rs1323158880 546 dbSNP
rs1401890898 547 dbSNP
rs1448229960 552 dbSNP
rs1385090703 559 dbSNP
rs566961260 563 dbSNP
rs1476825508 577 dbSNP
rs1396577977 579 dbSNP
rs927827532 580 dbSNP
rs1448658745 581 dbSNP
rs893683589 583 dbSNP
rs148296644 584 dbSNP
rs1447552161 587 dbSNP
rs1277971877 591 dbSNP
rs1490882028 591 dbSNP
rs1350323827 611 dbSNP
rs913188512 612 dbSNP
rs1228057877 620 dbSNP
rs1363493784 620 dbSNP
rs1049694366 621 dbSNP
rs1222097438 625 dbSNP
rs1432073407 633 dbSNP
rs1340454509 638 dbSNP
rs957831501 656 dbSNP
rs1376833752 657 dbSNP
rs67823069 657 dbSNP
rs932468087 663 dbSNP
rs1289367437 675 dbSNP
rs996458752 679 dbSNP
rs1388052302 682 dbSNP
rs748206484 683 dbSNP
rs966181731 687 dbSNP
rs1236903423 690 dbSNP
rs1019158479 691 dbSNP
rs530110514 693 dbSNP
rs1258436100 695 dbSNP
rs1204744267 708 dbSNP
rs1040864312 714 dbSNP
rs192062383 719 dbSNP
rs1275528973 727 dbSNP
rs1215585923 732 dbSNP
rs769269058 733 dbSNP
rs908643580 734 dbSNP
rs1346910036 738 dbSNP
rs1312996875 739 dbSNP
rs1303356994 742 dbSNP
rs12130051 744 dbSNP
rs1352458196 746 dbSNP
rs1172267592 748 dbSNP
rs1410330626 753 dbSNP
rs931361179 758 dbSNP
rs532456373 766 dbSNP
rs916132533 770 dbSNP
rs1476205097 774 dbSNP
rs939313873 787 dbSNP
rs1181615135 797 dbSNP
rs144311380 797 dbSNP
rs1401734479 802 dbSNP
rs1407895836 804 dbSNP
rs1157402139 805 dbSNP
rs746807170 807 dbSNP
rs960190072 808 dbSNP
rs566838598 809 dbSNP
rs1269748570 810 dbSNP
rs977587203 815 dbSNP
rs966424233 827 dbSNP
rs1198925437 829 dbSNP
rs1288303601 831 dbSNP
rs1020714622 835 dbSNP
rs1336169430 847 dbSNP
rs1244709866 852 dbSNP
rs1217685536 859 dbSNP
rs1293352977 862 dbSNP
rs780495908 867 dbSNP
rs1370641625 874 dbSNP
rs1299543598 881 dbSNP
rs1442607772 888 dbSNP
rs1349125052 894 dbSNP
rs115355361 895 dbSNP
rs78716322 905 dbSNP
rs199673754 906 dbSNP
rs1158517774 912 dbSNP
rs1417415412 915 dbSNP
rs1410375479 916 dbSNP
rs780788921 933 dbSNP
rs1477843392 936 dbSNP
rs1325032492 937 dbSNP
rs1245319295 942 dbSNP
rs1216002225 945 dbSNP
rs1469299778 951 dbSNP
rs542354807 964 dbSNP
rs1207489536 969 dbSNP
rs1314642061 972 dbSNP
rs901100601 982 dbSNP
rs1222466960 989 dbSNP
rs1366529065 990 dbSNP
rs1343268027 997 dbSNP
rs1290929965 1004 dbSNP
rs1442918017 1005 dbSNP
rs957380874 1007 dbSNP
rs1451670988 1008 dbSNP
rs1040832768 1030 dbSNP
rs1414105186 1031 dbSNP
rs1004015794 1033 dbSNP
rs1393572008 1036 dbSNP
rs1195813255 1040 dbSNP
rs1056902 1044 dbSNP
rs974984091 1054 dbSNP
rs1247900887 1055 dbSNP
rs1345026165 1059 dbSNP
rs887179740 1063 dbSNP
rs1487162679 1074 dbSNP
rs756761743 1076 dbSNP
rs1261949119 1087 dbSNP
rs771980670 1090 dbSNP
rs966290845 1092 dbSNP
rs1430021403 1093 dbSNP
rs1277757768 1105 dbSNP
rs142836783 1114 dbSNP
rs1236156288 1115 dbSNP
rs1175817920 1128 dbSNP
rs1296644640 1131 dbSNP
rs574872381 1133 dbSNP
rs1380431424 1136 dbSNP
rs1364061594 1146 dbSNP
rs1289518343 1147 dbSNP
rs1019084287 1148 dbSNP
rs1373808620 1150 dbSNP
rs1175784538 1159 dbSNP
rs1005071480 1169 dbSNP
rs1048499233 1181 dbSNP
rs1168842995 1183 dbSNP
rs931305956 1184 dbSNP
rs915950528 1185 dbSNP
rs1187389736 1187 dbSNP
rs1486059684 1190 dbSNP
rs1485070290 1191 dbSNP
rs751050625 1199 dbSNP
rs938873189 1209 dbSNP
rs748153982 1211 dbSNP
rs1225051960 1212 dbSNP
rs1309115405 1218 dbSNP
rs995017298 1227 dbSNP
rs1263153710 1234 dbSNP
rs894806408 1238 dbSNP
rs1202485271 1240 dbSNP
rs1033342625 1242 dbSNP
rs928888474 1245 dbSNP
rs1415605230 1258 dbSNP
rs977556222 1272 dbSNP
rs372230447 1277 dbSNP
rs913622180 1291 dbSNP
rs1042181154 1296 dbSNP
rs945243959 1299 dbSNP
rs1374080777 1308 dbSNP
rs764077248 1314 dbSNP
rs1414987405 1317 dbSNP
rs1474534209 1317 dbSNP
rs1189511847 1323 dbSNP
rs538123344 1324 dbSNP
rs957934394 1332 dbSNP
rs1249386715 1333 dbSNP
rs1214843518 1341 dbSNP
rs893660433 1343 dbSNP
rs1193799549 1344 dbSNP
rs138442691 1345 dbSNP
rs1361655043 1349 dbSNP
rs1251779061 1359 dbSNP
rs1232572561 1362 dbSNP
rs1027950614 1369 dbSNP
rs1332649495 1371 dbSNP
rs1295193518 1377 dbSNP
rs1234054519 1378 dbSNP
rs1454997524 1381 dbSNP
rs996487219 1383 dbSNP
rs936124034 1384 dbSNP
rs1468288503 1398 dbSNP
rs1356403663 1399 dbSNP
rs558839413 1402 dbSNP
rs574131226 1410 dbSNP
rs534402478 1420 dbSNP
rs944915767 1423 dbSNP
rs1418468452 1433 dbSNP
rs1186458794 1434 dbSNP
rs1362807589 1435 dbSNP
rs1003984771 1448 dbSNP
rs1179265452 1450 dbSNP
rs567113408 1450 dbSNP
rs1420547949 1460 dbSNP
rs1250945715 1462 dbSNP
rs752494685 1464 dbSNP
rs1212900473 1466 dbSNP
rs1467083696 1472 dbSNP
rs145816805 1474 dbSNP
rs984136599 1478 dbSNP
rs764884421 1482 dbSNP
rs950893083 1485 dbSNP
rs1481974150 1488 dbSNP
rs1048951616 1490 dbSNP
rs368929668 1493 dbSNP
rs1303119985 1499 dbSNP
rs894551759 1509 dbSNP
rs1055782531 1534 dbSNP
rs760987134 1536 dbSNP
rs555756545 1539 dbSNP
rs1272852708 1540 dbSNP
rs1003182304 1541 dbSNP
rs569244408 1548 dbSNP
rs1384069119 1550 dbSNP
rs1364088313 1561 dbSNP
rs1314940720 1564 dbSNP
rs1042017068 1580 dbSNP
rs1254764613 1584 dbSNP
rs1194147757 1585 dbSNP
rs551009087 1589 dbSNP
rs1009922456 1591 dbSNP
rs532265090 1598 dbSNP
rs1207035619 1600 dbSNP
rs946205498 1601 dbSNP
rs1279896533 1606 dbSNP
rs1232486554 1611 dbSNP
rs914780873 1619 dbSNP
rs571521086 1624 dbSNP
rs1430617409 1625 dbSNP
rs546624325 1628 dbSNP
rs1315607927 1632 dbSNP
rs936060979 1639 dbSNP
rs549423968 1640 dbSNP
rs1172654515 1656 dbSNP
rs187946652 1668 dbSNP
rs1039023548 1675 dbSNP
rs1174089149 1692 dbSNP
rs944674456 1697 dbSNP
rs1240284990 1701 dbSNP
rs921024781 1709 dbSNP
rs754499796 1714 dbSNP
rs911917591 1715 dbSNP
rs1165774690 1733 dbSNP
rs1447676816 1734 dbSNP
rs1257024303 1736 dbSNP
rs1426299661 1738 dbSNP
rs767756935 1742 dbSNP
rs183872781 1746 dbSNP
rs983716580 1751 dbSNP
rs1486806184 1754 dbSNP
rs929579070 1759 dbSNP
rs377373719 1760 dbSNP
rs1337947450 1767 dbSNP
rs1162814502 1770 dbSNP
rs1422014562 1772 dbSNP
rs1251981700 1773 dbSNP
rs78131788 1774 dbSNP
rs74928885 1785 dbSNP
rs1195868388 1787 dbSNP
rs1376964742 1787 dbSNP
rs549484309 1787 dbSNP
rs1480065493 1794 dbSNP
rs1249148103 1795 dbSNP
rs1334485395 1797 dbSNP
rs973984210 1814 dbSNP
rs576876637 1831 dbSNP
rs1169610082 1832 dbSNP
rs982751821 1834 dbSNP
rs1417226102 1836 dbSNP
rs530536140 1844 dbSNP
rs951380947 1845 dbSNP
rs1258493042 1856 dbSNP
rs562904939 1865 dbSNP
rs995767782 1877 dbSNP
rs199647646 1881 dbSNP
rs1291547378 1890 dbSNP
rs762041270 1893 dbSNP
rs981856744 1894 dbSNP
rs1319265149 1897 dbSNP
rs1034464134 1908 dbSNP
rs140638343 1909 dbSNP
rs907243300 1914 dbSNP
rs565125403 1919 dbSNP
rs1041985843 1922 dbSNP
rs946286182 1926 dbSNP
rs1356907503 1927 dbSNP
rs1284447421 1928 dbSNP
rs1021079258 1935 dbSNP
rs893397106 1946 dbSNP
rs1214948160 1957 dbSNP
rs769287472 1958 dbSNP
rs1054600691 1963 dbSNP
rs1009479440 1964 dbSNP
rs796121546 1971 dbSNP
rs1032151722 1982 dbSNP
rs1365917832 2003 dbSNP
rs1414746252 2016 dbSNP
rs1315108441 2023 dbSNP
rs1176873804 2027 dbSNP
rs749751666 2028 dbSNP
rs997096906 2040 dbSNP
rs1456270473 2049 dbSNP
rs1468373967 2059 dbSNP
rs899694996 2062 dbSNP
rs1211222580 2064 dbSNP
rs577614593 2065 dbSNP
rs1290015554 2073 dbSNP
rs1222826260 2077 dbSNP
rs1039117799 2083 dbSNP
rs1281069408 2099 dbSNP
rs1447251014 2101 dbSNP
rs190826445 2104 dbSNP
rs890451872 2108 dbSNP
rs1463047405 2116 dbSNP
rs1048198976 2120 dbSNP
rs1350513085 2125 dbSNP
rs1417978089 2126 dbSNP
rs1399168583 2133 dbSNP
rs1410440648 2156 dbSNP
rs1179583421 2163 dbSNP
rs929537727 2164 dbSNP
rs1409180286 2168 dbSNP
rs374728161 2172 dbSNP
rs540608114 2172 dbSNP
rs920866350 2172 dbSNP
rs1490418383 2174 dbSNP
rs938169755 2179 dbSNP
rs1214539690 2186 dbSNP
rs12756656 2186 dbSNP
rs573450358 2187 dbSNP
rs534037230 2193 dbSNP
rs1240546474 2212 dbSNP
rs1261811418 2221 dbSNP
rs981824326 2222 dbSNP
rs1368297516 2228 dbSNP
rs970485232 2228 dbSNP
rs982855723 2230 dbSNP
rs1428733494 2237 dbSNP
rs1347131363 2265 dbSNP
rs1159506373 2278 dbSNP
rs1239013898 2290 dbSNP
rs951309365 2301 dbSNP
rs779604597 2302 dbSNP
rs1175981096 2311 dbSNP
rs373592561 2321 dbSNP
rs746215988 2322 dbSNP
rs1264836007 2325 dbSNP
rs1224298497 2327 dbSNP
rs185957311 2329 dbSNP
rs1034433005 2331 dbSNP
rs1002993549 2335 dbSNP
rs1485170905 2340 dbSNP
rs1277912913 2341 dbSNP
rs907294339 2343 dbSNP
rs1321907679 2361 dbSNP
rs1236222411 2371 dbSNP
rs1384851949 2372 dbSNP
rs536708233 2376 dbSNP
rs1289345373 2382 dbSNP
rs1364131848 2388 dbSNP
rs1298931845 2397 dbSNP
rs770604036 2399 dbSNP
rs183106225 2405 dbSNP
rs1315098568 2409 dbSNP
rs1385747353 2416 dbSNP
rs1177983463 2419 dbSNP
rs1372961644 2423 dbSNP
rs1168997595 2424 dbSNP
rs777198992 2425 dbSNP
rs1425128473 2426 dbSNP
rs1480520774 2428 dbSNP
rs893374928 2436 dbSNP
rs963869296 2438 dbSNP
rs1196375337 2446 dbSNP
rs557027457 2451 dbSNP
rs1250586940 2463 dbSNP
rs1262911378 2464 dbSNP
rs1202326647 2465 dbSNP
rs1309246815 2473 dbSNP
rs1278915512 2476 dbSNP
rs1205015363 2477 dbSNP
rs1008949798 2480 dbSNP
rs890549716 2486 dbSNP
rs1295376318 2487 dbSNP
rs1265014958 2489 dbSNP
rs1396936386 2490 dbSNP
rs1396190147 2497 dbSNP
rs1296860851 2500 dbSNP
rs190344789 2501 dbSNP
rs571593641 2514 dbSNP
rs1170698890 2524 dbSNP
rs1460482246 2527 dbSNP
rs1415155003 2528 dbSNP
rs900711805 2542 dbSNP
rs993920106 2543 dbSNP
rs899195364 2545 dbSNP
rs1038341810 2549 dbSNP
rs1458984448 2550 dbSNP
rs1258647696 2556 dbSNP
rs1213097084 2564 dbSNP
rs80338328 2566 dbSNP
rs1273281082 2570 dbSNP
rs751589363 2580 dbSNP
rs938305863 2586 dbSNP
rs1335463706 2587 dbSNP
rs1305308475 2594 dbSNP
rs139019717 2603 dbSNP
rs1378231238 2607 dbSNP
rs1296056800 2613 dbSNP
rs764618178 2615 dbSNP
rs878875326 2616 dbSNP
rs1386364933 2623 dbSNP
rs1040525199 2632 dbSNP
rs943748794 2639 dbSNP
rs1046557245 2640 dbSNP
rs1362866712 2649 dbSNP
rs1400929456 2653 dbSNP
rs912327423 2655 dbSNP
rs536561809 2661 dbSNP
rs1156597599 2662 dbSNP
rs1441337809 2664 dbSNP
rs1170408699 2679 dbSNP
rs841370 2680 dbSNP
rs929662357 2696 dbSNP
rs1467122545 2697 dbSNP
rs569230070 2698 dbSNP
rs974438324 2702 dbSNP
rs1210585184 2709 dbSNP
rs1350147263 2714 dbSNP
rs1448123645 2714 dbSNP
rs1245501291 2716 dbSNP
rs987936936 2716 dbSNP
rs567089149 2718 dbSNP
rs1184807919 2732 dbSNP
rs958521373 2733 dbSNP
rs925010720 2736 dbSNP
rs1276627680 2745 dbSNP
rs927078702 2747 dbSNP
rs981276125 2763 dbSNP
rs1286789501 2770 dbSNP
rs1340340701 2770 dbSNP
rs1386856765 2770 dbSNP
rs963962311 2775 dbSNP
rs1251603809 2776 dbSNP
rs1019417389 2778 dbSNP
rs986653038 2792 dbSNP
rs1227387057 2793 dbSNP
rs1452500478 2795 dbSNP
rs548774621 2798 dbSNP
rs1379307676 2799 dbSNP
rs1199606550 2800 dbSNP
rs752588647 2801 dbSNP
rs1453332761 2802 dbSNP
rs185633996 2809 dbSNP
rs957639233 2813 dbSNP
rs1219040782 2814 dbSNP
rs1488772591 2826 dbSNP
rs954790922 2842 dbSNP
rs1033255892 2843 dbSNP
rs1347683889 2848 dbSNP
rs1275987308 2850 dbSNP
rs17393888 2866 dbSNP
rs1325321479 2869 dbSNP
rs900763934 2872 dbSNP
rs993621874 2880 dbSNP
rs1040494252 2897 dbSNP
rs1428200462 2900 dbSNP
rs1311977832 2904 dbSNP
rs1387521651 2909 dbSNP
rs1404208250 2911 dbSNP
rs1164731950 2919 dbSNP
rs1009035762 2920 dbSNP
rs1472771292 2922 dbSNP
rs532466671 2925 dbSNP
rs1016254423 2930 dbSNP
rs1371391070 2930 dbSNP
rs1196017804 2933 dbSNP
rs1478232018 2934 dbSNP
rs1184086303 2940 dbSNP
rs759842023 2945 dbSNP
rs532923760 2947 dbSNP
rs1047277224 2959 dbSNP
rs753653158 2970 dbSNP
rs1251340732 2975 dbSNP
rs1444524091 2977 dbSNP
rs1279832689 2979 dbSNP
rs1203340735 2982 dbSNP
rs1338082288 2985 dbSNP
rs1046520485 2987 dbSNP
rs919620943 2994 dbSNP
rs949542494 2996 dbSNP
rs1038049212 3000 dbSNP
rs559117567 3001 dbSNP
rs1052609511 3013 dbSNP
rs1293705908 3016 dbSNP
rs16862606 3018 dbSNP
rs924904686 3019 dbSNP
rs981259668 3021 dbSNP
rs971242222 3029 dbSNP
rs200223222 3033 dbSNP
rs1172835165 3035 dbSNP
rs1466229062 3038 dbSNP
rs1417370379 3044 dbSNP
rs1186040390 3047 dbSNP
rs1443727625 3052 dbSNP
rs1335888684 3056 dbSNP
rs912499404 3057 dbSNP
rs1306996169 3060 dbSNP
rs1181628251 3061 dbSNP
rs1238400329 3061 dbSNP
rs1407646944 3061 dbSNP
rs1367794787 3065 dbSNP
rs144374191 3070 dbSNP
rs1446113909 3070 dbSNP
rs202240164 3070 dbSNP
rs986746048 3070 dbSNP
rs201106116 3071 dbSNP
rs200313861 3072 dbSNP
rs1407293471 3073 dbSNP
rs957483591 3076 dbSNP
rs1033384941 3081 dbSNP
rs1158298415 3085 dbSNP
rs1025516008 3088 dbSNP
rs1412255253 3092 dbSNP
rs1240453298 3105 dbSNP
rs1179785215 3111 dbSNP
rs1468468898 3112 dbSNP
rs972551741 3113 dbSNP
rs1218746254 3122 dbSNP
rs181722636 3125 dbSNP
rs996149784 3133 dbSNP
rs1470540431 3141 dbSNP
rs964900877 3143 dbSNP
rs1098618 3149 dbSNP
rs1222954321 3150 dbSNP
rs1016180795 3152 dbSNP
rs1490907371 3155 dbSNP
rs1002172899 3158 dbSNP
rs1370243036 3159 dbSNP
rs1291794327 3164 dbSNP
rs1009004559 3166 dbSNP
rs905230872 3177 dbSNP
rs753192726 3181 dbSNP
rs1317948709 3182 dbSNP
rs1013876010 3188 dbSNP
rs1418149962 3198 dbSNP
rs1450881598 3201 dbSNP
rs140140017 3205 dbSNP
rs1454167329 3212 dbSNP
rs1423700473 3213 dbSNP
rs1188897786 3220 dbSNP
rs557419460 3221 dbSNP
rs1246824679 3226 dbSNP
rs1214605914 3227 dbSNP
rs936375846 3234 dbSNP
rs1287891396 3235 dbSNP
rs994289462 3236 dbSNP
rs151137182 3242 dbSNP
rs898248635 3245 dbSNP
rs1038420953 3248 dbSNP
rs1299137728 3249 dbSNP
rs542477537 3252 dbSNP
rs1220982088 3253 dbSNP
rs1368364475 3254 dbSNP
rs1269731395 3260 dbSNP
rs879699867 3262 dbSNP
rs1226130593 3264 dbSNP
rs1362694464 3267 dbSNP
rs577940694 3269 dbSNP
rs1299119449 3279 dbSNP
rs1434510286 3283 dbSNP
rs905760089 3284 dbSNP
rs553107462 3288 dbSNP
rs1283603361 3289 dbSNP
rs534564216 3292 dbSNP
rs567226056 3317 dbSNP
rs1425242596 3318 dbSNP
rs1056909 3333 dbSNP
rs1056910 3334 dbSNP
rs1192387479 3338 dbSNP
rs1929 3339 dbSNP
rs3208934 3341 dbSNP
rs3208935 3342 dbSNP
rs1476632379 3343 dbSNP
rs1264953165 3344 dbSNP
rs949854849 3345 dbSNP
rs913020633 3354 dbSNP
rs1482825959 3370 dbSNP
rs1254056765 3383 dbSNP
rs1212083724 3384 dbSNP
rs1320812621 3401 dbSNP
rs912256823 3402 dbSNP
rs1216943276 3403 dbSNP
rs1342590291 3406 dbSNP
rs113876651 3408 dbSNP
rs1279126543 3412 dbSNP
rs1414428752 3414 dbSNP
rs762057173 3429 dbSNP
rs1377366667 3432 dbSNP
rs1387932674 3440 dbSNP
rs1354536891 3449 dbSNP
rs988662945 3449 dbSNP
rs936058622 3450 dbSNP
rs926070391 3456 dbSNP
rs1425284411 3457 dbSNP
rs974704929 3458 dbSNP
rs964707926 3459 dbSNP
rs548911435 3463 dbSNP
rs1253739638 3465 dbSNP
rs189053401 3466 dbSNP
rs1481501814 3469 dbSNP
rs1430231905 3474 dbSNP
rs918382633 3474 dbSNP
rs751700252 3477 dbSNP
rs569782655 3480 dbSNP
rs370416307 3482 dbSNP
rs987718450 3487 dbSNP
rs951005580 3506 dbSNP
rs1477558560 3517 dbSNP
rs551431822 3521 dbSNP
rs1232840681 3522 dbSNP
rs909287226 3549 dbSNP
rs1244798752 3551 dbSNP
rs995034222 3552 dbSNP
rs532910433 3553 dbSNP
rs898210722 3557 dbSNP
rs1016716016 3559 dbSNP
rs1001198851 3564 dbSNP
rs559270332 3566 dbSNP
rs1449687175 3573 dbSNP
rs1465302014 3573 dbSNP
rs1170783258 3574 dbSNP
rs1457095570 3584 dbSNP
rs1266866077 3594 dbSNP
rs1366415243 3596 dbSNP
rs980845169 3598 dbSNP
rs546857337 3603 dbSNP
rs74533174 3604 dbSNP
rs1424221536 3606 dbSNP
rs1325138303 3612 dbSNP
rs111887261 3616 dbSNP
rs55741953 3616 dbSNP
rs1176649310 3622 dbSNP
rs1459044677 3625 dbSNP
rs547088417 3637 dbSNP
rs969356956 3638 dbSNP
rs528750906 3642 dbSNP
rs949965719 3644 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gugugaguacaccgGGGGUCgu 5'
                        :|||||  
Target 5' --ucaagccuauaaUCCCAG-- 3'
 		1 - 18
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000477853.1 | 3UTR | UCAAGCCUAUAAUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000477853.1 | 3UTR | UCAAGCCUAUAAUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
321 hsa-miR-4731-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081189 MIDN midnolin 2 4
MIRT113400 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT153789 NCOA3 nuclear receptor coactivator 3 2 2
MIRT169837 GIGYF1 GRB10 interacting GYF protein 1 2 6
MIRT441540 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT443470 ACPP acid phosphatase, prostate 2 2
MIRT443851 RGS6 regulator of G protein signaling 6 2 2
MIRT444416 EMC1 ER membrane protein complex subunit 1 2 2
MIRT444838 PDE6D phosphodiesterase 6D 2 2
MIRT444997 HRH1 histamine receptor H1 2 2
MIRT446371 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT449696 SLC10A3 solute carrier family 10 member 3 2 2
MIRT451068 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT451915 ILK integrin linked kinase 2 2
MIRT452990 CABP4 calcium binding protein 4 2 2
MIRT458034 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT460780 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT463916 WNT3 Wnt family member 3 2 2
MIRT465880 TMEM43 transmembrane protein 43 2 4
MIRT466317 THRA thyroid hormone receptor, alpha 2 2
MIRT468696 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT469129 RNF126 ring finger protein 126 2 2
MIRT472239 NFIC nuclear factor I C 2 2
MIRT479647 CD4 CD4 molecule 2 2
MIRT479734 CCND1 cyclin D1 2 6
MIRT479837 CCDC86 coiled-coil domain containing 86 2 2
MIRT483408 SPATA6 spermatogenesis associated 6 2 4
MIRT485972 RTBDN retbindin 2 2
MIRT486614 METTL6 methyltransferase like 6 2 2
MIRT487814 PER3 period circadian clock 3 2 2
MIRT488586 ST7L suppression of tumorigenicity 7 like 2 2
MIRT488673 WWP2 WW domain containing E3 ubiquitin protein ligase 2 2 2
MIRT490783 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491356 PEX6 peroxisomal biogenesis factor 6 2 2
MIRT493539 IGDCC3 immunoglobulin superfamily DCC subclass member 3 2 4
MIRT493894 FAM43A family with sequence similarity 43 member A 2 4
MIRT494664 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT506353 NUP50 nucleoporin 50 2 6
MIRT508553 CEP72 centrosomal protein 72 2 4
MIRT508722 ZNF682 zinc finger protein 682 2 4
MIRT508811 GPR155 G protein-coupled receptor 155 2 2
MIRT509070 MED18 mediator complex subunit 18 2 2
MIRT509107 BMP8B bone morphogenetic protein 8b 2 6
MIRT509198 TTF2 transcription termination factor 2 2 2
MIRT509308 ZNF460 zinc finger protein 460 2 2
MIRT509341 ZNF708 zinc finger protein 708 2 2
MIRT509381 ASH2L ASH2 like histone lysine methyltransferase complex subunit 2 6
MIRT509722 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT510008 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT510067 C12orf49 chromosome 12 open reading frame 49 2 6
MIRT510179 BCL2L2 BCL2 like 2 2 2
MIRT511300 KIAA1551 KIAA1551 2 2
MIRT511531 HMGB1 high mobility group box 1 2 6
MIRT512018 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT514112 SERF2 small EDRK-rich factor 2 2 2
MIRT514296 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514460 FANCA Fanconi anemia complementation group A 2 2
MIRT515183 CRCP CGRP receptor component 2 2
MIRT515290 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT515528 QRFPR pyroglutamylated RFamide peptide receptor 2 4
MIRT515553 TMEM134 transmembrane protein 134 2 2
MIRT515619 ISY1 ISY1 splicing factor homolog 2 2
MIRT515707 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT515988 SLC30A2 solute carrier family 30 member 2 2 2
MIRT516179 POLR3A RNA polymerase III subunit A 2 4
MIRT516247 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT516505 SYTL3 synaptotagmin like 3 2 4
MIRT516586 SPHAR S-phase response (cyclin related) 2 2
MIRT516697 ODF2L outer dense fiber of sperm tails 2 like 2 2
MIRT516779 PTRF caveolae associated protein 1 2 4
MIRT516998 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517094 CCDC30 coiled-coil domain containing 30 2 4
MIRT517163 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517234 PRIM1 DNA primase subunit 1 2 4
MIRT517602 SAV1 salvador family WW domain containing protein 1 2 2
MIRT517631 ZNF491 zinc finger protein 491 2 2
MIRT517734 C1orf220 chromosome 1 open reading frame 220 2 2
MIRT517748 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 4
MIRT518005 RPL4 ribosomal protein L4 2 4
MIRT518184 SLC27A4 solute carrier family 27 member 4 2 2
MIRT518266 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518448 KIF6 kinesin family member 6 2 2
MIRT518679 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT518834 NEK8 NIMA related kinase 8 2 2
MIRT519142 C2orf49 chromosome 2 open reading frame 49 2 2
MIRT519250 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT519369 RBM28 RNA binding motif protein 28 2 2
MIRT519410 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519495 MAPK13 mitogen-activated protein kinase 13 2 2
MIRT520061 YIPF4 Yip1 domain family member 4 2 2
MIRT520132 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT520289 UBXN2A UBX domain protein 2A 2 2
MIRT520433 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT520553 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT520764 TCF23 transcription factor 23 2 2
MIRT520806 TAOK1 TAO kinase 1 2 2
MIRT520874 STX17 syntaxin 17 2 2
MIRT520986 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521077 SLC25A15 solute carrier family 25 member 15 2 2
MIRT521165 SDHAF1 succinate dehydrogenase complex assembly factor 1 2 2
MIRT521213 SBNO1 strawberry notch homolog 1 2 2
MIRT521485 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT521638 PROSC pyridoxal phosphate binding protein 2 2
MIRT522151 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522300 NKAP NFKB activating protein 2 2
MIRT522445 MOB4 MOB family member 4, phocein 2 2
MIRT522493 MFN1 mitofusin 1 2 2
MIRT522877 KHSRP KH-type splicing regulatory protein 2 2
MIRT523059 HYPK huntingtin interacting protein K 2 2
MIRT523095 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT523577 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT523634 FOXK1 forkhead box K1 2 4
MIRT524231 DCTN6 dynactin subunit 6 2 2
MIRT524266 CYCS cytochrome c, somatic 2 2
MIRT524367 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524430 CNKSR3 CNKSR family member 3 2 2
MIRT524557 CASP16 caspase 16, pseudogene 2 2
MIRT524585 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT524955 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT531856 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT541995 MYO1C myosin IC 2 2
MIRT542247 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT542601 YOD1 YOD1 deubiquitinase 2 2
MIRT545238 ZFAND3 zinc finger AN1-type containing 3 2 2
MIRT552183 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT553520 TMEM245 transmembrane protein 245 2 2
MIRT554430 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT559138 BTF3L4 basic transcription factor 3 like 4 2 4
MIRT564062 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT564857 ZBED3 zinc finger BED-type containing 3 2 2
MIRT565382 TGOLN2 trans-golgi network protein 2 2 2
MIRT568952 RUNX3 runt related transcription factor 3 2 2
MIRT568983 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569255 FAM129B family with sequence similarity 129 member B 2 2
MIRT570199 RAP1GAP2 RAP1 GTPase activating protein 2 2 2
MIRT570913 PPFIA4 PTPRF interacting protein alpha 4 2 2
MIRT571084 ZNF670 zinc finger protein 670 2 2
MIRT571456 YKT6 YKT6 v-SNARE homolog 2 2
MIRT574233 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT608730 MYH9 myosin heavy chain 9 2 2
MIRT610109 IL17REL interleukin 17 receptor E like 2 2
MIRT614235 WDR53 WD repeat domain 53 2 4
MIRT626199 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626325 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626381 BBS1 Bardet-Biedl syndrome 1 2 2
MIRT627164 ZNF48 zinc finger protein 48 2 2
MIRT633098 CBX5 chromobox 5 2 2
MIRT642246 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT643882 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644837 SEC14L4 SEC14 like lipid binding 4 2 2
MIRT645189 POLR3F RNA polymerase III subunit F 2 4
MIRT645781 FFAR4 free fatty acid receptor 4 2 2
MIRT647144 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647273 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT648743 FAM46B family with sequence similarity 46 member B 2 2
MIRT649204 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT649859 WDR12 WD repeat domain 12 2 2
MIRT650814 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT659537 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT664212 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664373 CYB5A cytochrome b5 type A 2 2
MIRT667395 MOB1B MOB kinase activator 1B 2 2
MIRT669465 ATL3 atlastin GTPase 3 2 2
MIRT670556 SHISA2 shisa family member 2 2 2
MIRT673104 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT679350 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT680354 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680680 ZNF785 zinc finger protein 785 2 2
MIRT680759 WDR73 WD repeat domain 73 2 2
MIRT681392 RMND1 required for meiotic nuclear division 1 homolog 2 2
MIRT681687 ABI2 abl interactor 2 2 2
MIRT681817 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682314 RAB42 RAB42, member RAS oncogene family 2 2
MIRT683308 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683374 ESR2 estrogen receptor 2 2 2
MIRT683466 CCS copper chaperone for superoxide dismutase 2 2
MIRT683481 ZNF7 zinc finger protein 7 2 2
MIRT683514 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683860 OCIAD1 OCIA domain containing 1 2 2
MIRT683926 SLC43A3 solute carrier family 43 member 3 2 2
MIRT683935 MYLK3 myosin light chain kinase 3 2 2
MIRT684068 TLR7 toll like receptor 7 2 2
MIRT684120 CEP104 centrosomal protein 104 2 2
MIRT684192 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT684343 IFIT3 interferon induced protein with tetratricopeptide repeats 3 2 2
MIRT684480 GPR137B G protein-coupled receptor 137B 2 2
MIRT684565 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684608 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684643 PDE4C phosphodiesterase 4C 2 2
MIRT684700 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684735 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684911 CD28 CD28 molecule 2 2
MIRT685024 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT685186 DCTN5 dynactin subunit 5 2 2
MIRT685234 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685303 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685345 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685553 TXK TXK tyrosine kinase 2 2
MIRT685570 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685651 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685697 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685731 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685873 RTN2 reticulon 2 2 2
MIRT685937 PTGIS prostaglandin I2 synthase 2 2
MIRT686095 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686147 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686271 WWC1 WW and C2 domain containing 1 2 2
MIRT686307 VPS53 VPS53, GARP complex subunit 2 2
MIRT686349 USP15 ubiquitin specific peptidase 15 2 2
MIRT686377 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686431 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686477 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686515 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686682 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686818 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686904 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT686974 SERINC1 serine incorporator 1 2 2
MIRT687035 RNF115 ring finger protein 115 2 2
MIRT687067 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687240 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687494 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT687591 MANEAL mannosidase endo-alpha like 2 2
MIRT687635 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687673 LMBR1L limb development membrane protein 1 like 2 2
MIRT687849 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687918 HOOK3 hook microtubule tethering protein 3 2 2
MIRT687974 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688105 GK5 glycerol kinase 5 (putative) 2 2
MIRT688115 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688148 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688263 FAM213A family with sequence similarity 213 member A 2 2
MIRT688456 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688497 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688558 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT688668 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT689057 AGMAT agmatinase 2 2
MIRT689075 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT689108 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689161 ZNF665 zinc finger protein 665 2 2
MIRT689788 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689835 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690061 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690727 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690974 ZNF578 zinc finger protein 578 2 2
MIRT691066 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691315 KIAA1841 KIAA1841 2 2
MIRT691485 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691568 CCDC125 coiled-coil domain containing 125 2 2
MIRT691601 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692059 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692099 CXorf38 chromosome X open reading frame 38 2 4
MIRT692311 RFK riboflavin kinase 2 2
MIRT692371 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692432 METTL8 methyltransferase like 8 2 2
MIRT692468 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692532 PARD3 par-3 family cell polarity regulator 2 2
MIRT692594 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692776 SYNPO2L synaptopodin 2 like 2 2
MIRT692810 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692868 RBM41 RNA binding motif protein 41 2 2
MIRT693131 THEM4 thioesterase superfamily member 4 2 2
MIRT693313 TRIM58 tripartite motif containing 58 2 2
MIRT693497 MOB3A MOB kinase activator 3A 2 2
MIRT694101 ZNF446 zinc finger protein 446 2 2
MIRT694173 POLM DNA polymerase mu 2 2
MIRT694186 ZNF347 zinc finger protein 347 2 2
MIRT694444 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT694653 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694802 STX4 syntaxin 4 2 2
MIRT694922 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695174 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695305 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 4
MIRT695656 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695823 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695964 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696174 GNB5 G protein subunit beta 5 2 2
MIRT696433 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696610 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696854 UBOX5 U-box domain containing 5 2 2
MIRT696896 C14orf105 coiled-coil domain containing 198 2 2
MIRT697382 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697529 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT697973 TSPAN6 tetraspanin 6 2 2
MIRT698325 TMEM127 transmembrane protein 127 2 2
MIRT698915 SPEM1 spermatid maturation 1 2 2
MIRT699257 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699311 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699624 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699688 SF3B3 splicing factor 3b subunit 3 2 2
MIRT700040 RPL14 ribosomal protein L14 2 2
MIRT700095 RNF19B ring finger protein 19B 2 2
MIRT700498 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700747 PLAA phospholipase A2 activating protein 2 2
MIRT701103 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701568 MYPN myopalladin 2 2
MIRT701692 MYADM myeloid associated differentiation marker 2 2
MIRT701815 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702435 KIAA1549 KIAA1549 2 2
MIRT702518 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT702954 HIP1 huntingtin interacting protein 1 2 2
MIRT703079 GPRIN3 GPRIN family member 3 2 2
MIRT704106 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704138 DNAL1 dynein axonemal light chain 1 2 2
MIRT704187 LDHD lactate dehydrogenase D 2 2
MIRT704754 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705075 C4orf29 abhydrolase domain containing 18 2 2
MIRT705342 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706274 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706397 HAS2 hyaluronan synthase 2 2 2
MIRT706431 LIAS lipoic acid synthetase 2 2
MIRT706506 MTMR9 myotubularin related protein 9 2 2
MIRT707586 PCNXL2 pecanex homolog 2 2 2
MIRT708361 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708444 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT709915 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT712607 BHLHA15 basic helix-loop-helix family member a15 2 2
MIRT716540 GOLGA2 golgin A2 2 2
MIRT721623 VDR vitamin D receptor 2 2
MIRT724887 MVK mevalonate kinase 2 2
MIRT725257 PARVB parvin beta 2 2
MIRT755885 RPLP0 ribosomal protein lateral stalk subunit P0 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4731 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4731 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4731 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4731-5p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-4731-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4731-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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