pre-miRNA Information
pre-miRNA hsa-mir-4282   
Genomic Coordinates chr6: 72967687 - 72967753
Description Homo sapiens miR-4282 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4282
Sequence 40| UAAAAUUUGCAUCCAGGA |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN32074657 13 COSMIC
COSN6331413 18 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1195771339 5 dbSNP
rs755058572 6 dbSNP
rs1245753664 11 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TRA2B   
Synonyms Htra2-beta, PPP1R156, SFRS10, SRFS10, TRA2-BETA, TRAN2B
Description transformer 2 beta homolog
Transcript NM_004593   
Expression
Putative miRNA Targets on TRA2B
3'UTR of TRA2B
(miRNA target sites are highlighted)
>TRA2B|NM_004593|3'UTR
   1 AGCATGAAGACTTTCTGAAACCTGCCCTAGAGCTGGGATATTGTTTGTGGGCAATATTTTTTATTGTCTCTTGTTTAAAA
  81 AGTGAACAGTGCCTAGTGAAGTTAGGTGACTTTTACACCTTTTACGATGACTACTTTTGGTGGAGTTGAAATGCTGTTTT
 161 CATTCTGCATTTGTGTAGTTTGGTGCTTTGTTCCAAGTTAAGTGTTTTCAGAAAAGTATGTTTTGCATGTATTTTTTTAC
 241 AGTCTAAATTTTGACTGCTGAGAAGTTTCTATTGTACAAAACTTCATTTAAAAGGTTTTTCTACTGAATCCAGGGTATTC
 321 TGAAGATCGAAGCCTGTGTAAAATGCTACCAAATGGCAAAAAGCAACAATAAACAGTTTGATTTTTACTTTTCTTTCTAA
 401 CATATCAATGCTTAGCAGAACTATTCAGATTGTCAGTAGTAAATTTAAAGACAAATGCCCGTTTTCCTCCAGTCCATGAA
 481 ACATACCATACTTATATACCTGCAACTAAGTGTTTAAAATTATGCTCTGTAACTCTGTACTGCTAGTATTAGAACTAAAA
 561 ATCTTAAAATACAGCCAGTGCTTAATGCTTATATCAATGTGGATTTGTCGGCTTTTATGTAATCTGTAATATGTATAGCA
 641 GGAAATACGAAGAGTTACACAGTGTATGCCTTAAAAGGCTGTTTCTTAAAGGTGTTACAAGGGGATAATGGTATTTCAAC
 721 TAGTTATCAGCAAGTGACAATACATTCCACCACAAATACACTCTTGTTCTTCTAGCTTTTAGACTATATGAAAAAACCGG
 801 GTGCTTCAAAGTACATGATAAGGGAACACTATACCTGTCATGGATGAACTGAAGACTTTGCCTGTTCATTTTTTAAATAT
 881 TATTTTCAGGTCCTTTGCTTACCAAAGGAGGCCCAATTTCACTCAAATGTTTTGAGAACTGTGTTTAAATAAACGCAAAT
 961 GAAAAGAAAAATGTTGGTGCAGCTGTTCACAAAGAAGTGTTCTTGTTCTATTATAATTAGAGTTCTTCTGTAGTTTAATC
1041 GTTAGGGCAGTGTGTTCCTTGGGCTGAGGTGTATCTTTGCTATTTTGGGCTGGGTTGAGGGGGGGATGAATTTCTGTATT
1121 CCTGGAAAATTCAGAGTGCATAACTAGGTATTAGAGTGATCTCCATTTGGGGATGGAGTTACAGTAAATAACTAGACTGC
1201 GGGTACTTTAATACATGTTCTTATTATTTTGCATTTAAGTAATTTTCATGACCAATTGTAGGGATGTTGCTACAGGTGGG
1281 TTATTTTGTTGCCTTGCTAACCTTTATCGCATCTAGGTATTAGTATGTTTCAGGTACTTTGGGAAGAACTTTACATATAA
1361 TCTTTAGCAATGAAATGATGTAGAGTAACTTACCTTAGTTCAAATAGCTGTTTAAGTGGCAATGCCACGATCTGAATTGA
1441 ACCTAGGTGATCTTAGTCCACAGTTCTCTTGATCATGATGTCTCAAATCTGGGTACCTGGGTGATGGAAAATACCAGTAA
1521 TGGAGCATAGGCAGTATTGGCAGGTCTTAATTTGTAAAACTTACTGTCCAGGGTGTTTTCAGTGTTTGCCAACTTGTGGT
1601 AAATTAATATGCTTAGAGAACTACCCTTAGGTTTGTTTCTGATAAGCATGTGGAAACAACTTAGTATATGCCTGATGGGT
1681 TATTTCAAATTGTTCTCAATGAGTTTTGAAACAAGAATTTGTAGTATTTATATATAAAGTTGAGTTTTAGGGTGTGGTCC
1761 CAGAGGGGGTTGTGTTATGGATGGATACATTAAAGGCTGAGAAACCTGGTTTTATCGTGGTAGTATATACAGGCATCCTT
1841 TCCTGAAGTAACTACATTCTCCACCATTTTCTCCCCAACCAAACCTCTCCCCATCAGTTAACTGATGGCTTGCGAGTTCA
1921 CACTCCTGATAATCTCGAACATAACCCTCGGTTTCTATCCTAAAGCCTGAGTTTTAGCCCTTTAGTTGTGTAGCCATCCT
2001 TTATCCTGCTGATTGAAAGTTTCCTTTTTTAGGCTAGTTTGAGTTGTTTTCTGGCTTTTAGATTTGAAAGAATTTTAGCC
2081 ATTTGACATGGCTACAAAGAGTGTTAACAGGCAAAAGACTGAGGAAAATTTGGAATTTTACCAAGTTGAGATAGACTGAG
2161 AAGTAGTGAGACAAAGTGGTAGTCTTTTGATGTGCTGTAATGCTAGTCGCCAGTTTCATGAAAGGGAGGCAGCAGTTACC
2241 CGTAGGTAACCCCTAGGTAACTGCTGCCATGGGCAGCTGAATCAGACAAAAGCCATGGGAAAGGATAAATTTGAGTCTTA
2321 AAGTTACTGCCTCAAGGCAAAGGGACTTGGAGGCTTTTATATGCCAATACAAACAATCCATTTCTTATAGCTGTAGGGCT
2401 GAGACTACTAAAACCAAATGTAAAGTTCATTTGGAAGATTGCTAAGTTAAATAGTTTTATACTAGGCTTTTGTGAAACTT
2481 CTCAGGAAATCAACAGGGTCCCAGCAAGTGGAAATAAGGCTGTGTCAAAAGATTTGTAGACCTGGGAGCAGGGGTTTCCG
2561 ATCTCCTGGCCATGGATTGCCTGAGCTCCGCCGCCTGTCAGATCAGCAACAGCAGATTTTCATAGCAGGAATCCTATTGT
2641 GAAGTGCGCTTGAGAGGGATCTAGCTTGCACATTTCCTTATGGAAATCTAACTACATGTTAGAGAATGCTCAAGGTCTGC
2721 AATGTTTACATTGTTGCCCCTACATAAGGAATATATGCCTTAAGATAAAACTAATAGCTCTTAGCCCTCTTACACCATTG
2801 ACTAGGATTCCAATTCTGCAAGGCCCAGGAGGAGAAATTGAGAATTAGAAGTTTCACCGAGAAGAAATAAAAAGATTTGG
2881 TTTGCATTATCAAAATTTCTGTAAATTATATGGAAATTTTGAGGATGGATTAGGCTGGATTTATTAGCAGTGGACACGCC
2961 TCCAATATTCCTTCAGCATGCCATCTCAGTGGATTTTGATTGGCTCTTGTAGGATTGGACTTAATGCTAGCTTATGCCAA
3041 ATGTCATCAAAAAGCCAGAATGCTACTACAGTAATGTAAAGGATTATTGTATATAGTGTAAAGGATTATTATGTGTAATC
3121 TTTAATATATAATGTAAAGACTTAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' aggaccUACGUUUAAAAu 5'
                ||| ||||||| 
Target 5' aattatATGGAAATTTTg 3'
2904 - 2921 152.00 -6.30
2
miRNA  3' aggaccuaCGUUUAAAAu 5'
                  |||:||||| 
Target 5' cagcaacaGCAGATTTTc 3'
2604 - 2621 134.00 -6.00
3
miRNA  3' agGACCUACGUU-UAAAAu 5'
            :|| : |||| ||||| 
Target 5' gtTTGTGGGCAATATTTTt 3'
43 - 61 124.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30174013 9 COSMIC
COSN20074699 13 COSMIC
COSN30510560 27 COSMIC
COSN31553943 65 COSMIC
COSN31504699 71 COSMIC
COSN19569825 89 COSMIC
COSN30497627 100 COSMIC
COSN30143671 111 COSMIC
COSN30519139 120 COSMIC
COSN31496145 145 COSMIC
COSN7840442 181 COSMIC
COSN7840441 194 COSMIC
COSN30119933 211 COSMIC
COSN7840440 245 COSMIC
COSN30174124 260 COSMIC
COSN20315987 271 COSMIC
COSN17710682 276 COSMIC
COSN7840439 277 COSMIC
COSN28751430 312 COSMIC
COSN27135560 329 COSMIC
COSN31567851 385 COSMIC
COSN22889016 449 COSMIC
COSN23032313 457 COSMIC
COSN26194686 555 COSMIC
COSN26194685 561 COSMIC
COSN31530549 563 COSMIC
COSN193698 582 COSMIC
COSN31527995 793 COSMIC
COSN20099475 835 COSMIC
COSN23196975 862 COSMIC
COSN31552417 954 COSMIC
COSN22356779 1000 COSMIC
COSN31611229 1010 COSMIC
COSN8488846 1138 COSMIC
COSN5530450 1362 COSMIC
COSN21456782 1721 COSMIC
COSN21064645 1780 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1158028499 2 dbSNP
rs769428793 4 dbSNP
rs200781116 5 dbSNP
rs201581851 5 dbSNP
rs1427132502 10 dbSNP
rs781778452 11 dbSNP
rs1490548334 14 dbSNP
rs1268234157 15 dbSNP
rs1011028710 24 dbSNP
rs1007096188 27 dbSNP
rs893880534 32 dbSNP
rs755369754 33 dbSNP
rs999547382 36 dbSNP
rs751832963 41 dbSNP
rs1315682771 42 dbSNP
rs756137663 43 dbSNP
rs112068216 46 dbSNP
rs764085362 54 dbSNP
rs1052456128 59 dbSNP
rs773225268 67 dbSNP
rs1312174506 71 dbSNP
rs1333119332 88 dbSNP
rs1415384820 93 dbSNP
rs1443741941 99 dbSNP
rs1360617765 106 dbSNP
rs1156685794 111 dbSNP
rs1376138917 113 dbSNP
rs1399128616 115 dbSNP
rs1407571562 117 dbSNP
rs1282334488 118 dbSNP
rs996406465 119 dbSNP
rs1473603346 125 dbSNP
rs1415850343 126 dbSNP
rs762701471 128 dbSNP
rs1179818644 130 dbSNP
rs945933136 133 dbSNP
rs1804656 139 dbSNP
rs546937130 151 dbSNP
rs900708076 159 dbSNP
rs151178459 161 dbSNP
rs1196087617 168 dbSNP
rs564446866 169 dbSNP
rs936078927 172 dbSNP
rs1214111174 174 dbSNP
rs941813408 178 dbSNP
rs927331185 186 dbSNP
rs185813884 197 dbSNP
rs1446020613 200 dbSNP
rs980315486 202 dbSNP
rs907612113 203 dbSNP
rs1398963560 208 dbSNP
rs530964665 211 dbSNP
rs1440944261 212 dbSNP
rs563622912 218 dbSNP
rs971945529 219 dbSNP
rs1268335694 225 dbSNP
rs542359344 231 dbSNP
rs1341793010 239 dbSNP
rs984134981 240 dbSNP
rs1332015865 242 dbSNP
rs1257617169 254 dbSNP
rs1292206391 258 dbSNP
rs950963851 261 dbSNP
rs180800948 267 dbSNP
rs769279088 270 dbSNP
rs1381280704 271 dbSNP
rs928281065 271 dbSNP
rs1194409464 272 dbSNP
rs1375111911 274 dbSNP
rs759260857 282 dbSNP
rs962437811 285 dbSNP
rs969991243 290 dbSNP
rs1429729912 300 dbSNP
rs1327328268 303 dbSNP
rs190002696 306 dbSNP
rs1388564623 312 dbSNP
rs1018417209 320 dbSNP
rs1006736102 328 dbSNP
rs540117459 329 dbSNP
rs890982410 333 dbSNP
rs775949077 335 dbSNP
rs1277817846 336 dbSNP
rs1010192322 344 dbSNP
rs1335636272 350 dbSNP
rs1235283132 354 dbSNP
rs1321457947 356 dbSNP
rs761919094 357 dbSNP
rs572822105 377 dbSNP
rs1459085468 379 dbSNP
rs1488465880 384 dbSNP
rs1392297374 386 dbSNP
rs1264417665 388 dbSNP
rs548024781 393 dbSNP
rs955832448 396 dbSNP
rs1262108167 397 dbSNP
rs891683366 397 dbSNP
rs1031107446 399 dbSNP
rs1366168429 399 dbSNP
rs999578623 401 dbSNP
rs1159095875 402 dbSNP
rs1386973407 408 dbSNP
rs557657288 409 dbSNP
rs1185327657 411 dbSNP
rs1297346751 418 dbSNP
rs1356399586 418 dbSNP
rs539029948 430 dbSNP
rs1416825515 431 dbSNP
rs1475278217 434 dbSNP
rs1310803435 436 dbSNP
rs935964335 452 dbSNP
rs1210203142 455 dbSNP
rs1263023608 458 dbSNP
rs996867058 459 dbSNP
rs905962389 460 dbSNP
rs1221700952 461 dbSNP
rs1485817298 466 dbSNP
rs1323040140 474 dbSNP
rs368221868 476 dbSNP
rs950147209 482 dbSNP
rs1422740567 486 dbSNP
rs1010852417 495 dbSNP
rs571227068 495 dbSNP
rs770553524 499 dbSNP
rs1006364495 501 dbSNP
rs1249739557 506 dbSNP
rs886574806 510 dbSNP
rs1436306321 512 dbSNP
rs541192176 512 dbSNP
rs929566767 513 dbSNP
rs1186608196 532 dbSNP
rs1378636903 537 dbSNP
rs1392578659 539 dbSNP
rs1309222979 540 dbSNP
rs958073214 549 dbSNP
rs1240017709 554 dbSNP
rs1044052052 558 dbSNP
rs34428887 570 dbSNP
rs1325253825 571 dbSNP
rs574934254 579 dbSNP
rs376533799 581 dbSNP
rs1350531991 583 dbSNP
rs1208384360 589 dbSNP
rs1351737847 597 dbSNP
rs556777783 609 dbSNP
rs551534684 610 dbSNP
rs1391097921 620 dbSNP
rs1212468569 624 dbSNP
rs1190937165 627 dbSNP
rs1452142271 630 dbSNP
rs1251956026 632 dbSNP
rs1358865331 635 dbSNP
rs1462669022 637 dbSNP
rs1300011688 640 dbSNP
rs1191461998 648 dbSNP
rs1017926585 649 dbSNP
rs1446063947 649 dbSNP
rs568528091 660 dbSNP
rs1249186711 662 dbSNP
rs985637913 662 dbSNP
rs978212058 666 dbSNP
rs547195081 668 dbSNP
rs535262671 678 dbSNP
rs1311297289 687 dbSNP
rs571146114 688 dbSNP
rs1342806852 695 dbSNP
rs1259539452 699 dbSNP
rs955144284 701 dbSNP
rs1456082929 703 dbSNP
rs954810506 703 dbSNP
rs1197389072 709 dbSNP
rs1253624153 710 dbSNP
rs1489416329 711 dbSNP
rs1189305011 717 dbSNP
rs1424170636 719 dbSNP
rs1029918741 720 dbSNP
rs552946656 727 dbSNP
rs965047851 730 dbSNP
rs1010035353 732 dbSNP
rs1397390629 745 dbSNP
rs769336597 746 dbSNP
rs1032902496 747 dbSNP
rs1434910410 757 dbSNP
rs1006389301 759 dbSNP
rs768979915 765 dbSNP
rs1300820357 766 dbSNP
rs1387619225 769 dbSNP
rs886646720 772 dbSNP
rs1216637413 773 dbSNP
rs1279707486 773 dbSNP
rs1000102064 774 dbSNP
rs1296524729 774 dbSNP
rs1315681381 776 dbSNP
rs1217546191 780 dbSNP
rs1273249443 784 dbSNP
rs1323472409 785 dbSNP
rs1219322852 786 dbSNP
rs1246005023 787 dbSNP
rs1442054390 788 dbSNP
rs1371749190 795 dbSNP
rs530927846 798 dbSNP
rs186428018 799 dbSNP
rs780500965 809 dbSNP
rs950210598 811 dbSNP
rs1261382562 812 dbSNP
rs374116917 813 dbSNP
rs1044512158 815 dbSNP
rs1403633409 818 dbSNP
rs1416008887 818 dbSNP
rs1164713668 822 dbSNP
rs1061425 828 dbSNP
rs1296727691 831 dbSNP
rs1433412454 831 dbSNP
rs1491364950 833 dbSNP
rs548349155 834 dbSNP
rs892774929 834 dbSNP
rs144598833 839 dbSNP
rs71694444 839 dbSNP
rs1226059361 840 dbSNP
rs1289062817 858 dbSNP
rs895863846 859 dbSNP
rs1047886689 860 dbSNP
rs748616105 860 dbSNP
rs143141787 864 dbSNP
rs934563486 867 dbSNP
rs920857800 875 dbSNP
rs986639582 877 dbSNP
rs933426310 882 dbSNP
rs770945612 892 dbSNP
rs1471855383 893 dbSNP
rs923398934 895 dbSNP
rs1247737240 901 dbSNP
rs746113857 903 dbSNP
rs975204812 905 dbSNP
rs1157271988 914 dbSNP
rs964685251 916 dbSNP
rs1016215224 920 dbSNP
rs865893620 921 dbSNP
rs973653866 947 dbSNP
rs950953954 950 dbSNP
rs1445259227 954 dbSNP
rs561702673 954 dbSNP
rs540015120 955 dbSNP
rs1344767639 959 dbSNP
rs910917213 960 dbSNP
rs1352740686 961 dbSNP
rs1295973930 962 dbSNP
rs3179834 966 dbSNP
rs907334083 967 dbSNP
rs1281078235 971 dbSNP
rs549688631 972 dbSNP
rs1209572441 978 dbSNP
rs1234148820 980 dbSNP
rs751678322 992 dbSNP
rs922325141 1002 dbSNP
rs763993579 1003 dbSNP
rs1454985106 1005 dbSNP
rs955889052 1006 dbSNP
rs1409253530 1010 dbSNP
rs529518311 1012 dbSNP
rs1403979452 1013 dbSNP
rs1412377064 1014 dbSNP
rs1332972876 1018 dbSNP
rs1400426392 1018 dbSNP
rs1360656504 1020 dbSNP
rs1448284200 1020 dbSNP
rs1376059688 1021 dbSNP
rs1233783617 1025 dbSNP
rs1310376401 1030 dbSNP
rs1032828894 1031 dbSNP
rs1218895266 1036 dbSNP
rs1000155967 1040 dbSNP
rs934594403 1041 dbSNP
rs766758300 1044 dbSNP
rs758350482 1045 dbSNP
rs903084476 1054 dbSNP
rs564029072 1058 dbSNP
rs1023392656 1061 dbSNP
rs1477879601 1067 dbSNP
rs1171658285 1075 dbSNP
rs1423818595 1078 dbSNP
rs1466796237 1079 dbSNP
rs1303808727 1080 dbSNP
rs1167904968 1082 dbSNP
rs1399527565 1086 dbSNP
rs1387251373 1087 dbSNP
rs1325400327 1088 dbSNP
rs749216715 1090 dbSNP
rs1435421573 1091 dbSNP
rs1279086269 1098 dbSNP
rs895905143 1099 dbSNP
rs564010169 1100 dbSNP
rs575083843 1101 dbSNP
rs755313864 1101 dbSNP
rs1263530168 1105 dbSNP
rs1422330714 1106 dbSNP
rs1478587824 1106 dbSNP
rs984736478 1106 dbSNP
rs1449613084 1107 dbSNP
rs1457925716 1108 dbSNP
rs1164947103 1114 dbSNP
rs899363658 1136 dbSNP
rs1026579284 1140 dbSNP
rs1357029790 1143 dbSNP
rs759310328 1144 dbSNP
rs1185705320 1147 dbSNP
rs1342666439 1163 dbSNP
rs556932270 1166 dbSNP
rs910765666 1170 dbSNP
rs1277758701 1177 dbSNP
rs1485305958 1179 dbSNP
rs6444088 1182 dbSNP
rs182136411 1183 dbSNP
rs1484795032 1187 dbSNP
rs1259163217 1189 dbSNP
rs1228078138 1192 dbSNP
rs1430099808 1196 dbSNP
rs533376476 1197 dbSNP
rs867985596 1200 dbSNP
rs190071546 1201 dbSNP
rs988585152 1204 dbSNP
rs535223321 1213 dbSNP
rs955774169 1214 dbSNP
rs1012708471 1222 dbSNP
rs1189017497 1223 dbSNP
rs1340426269 1223 dbSNP
rs925811806 1224 dbSNP
rs978582842 1226 dbSNP
rs1159067537 1229 dbSNP
rs1398121706 1229 dbSNP
rs139837042 1231 dbSNP
rs541157152 1235 dbSNP
rs1319452927 1243 dbSNP
rs1297829403 1248 dbSNP
rs1457504913 1252 dbSNP
rs1403094066 1253 dbSNP
rs1397925587 1254 dbSNP
rs146390625 1255 dbSNP
rs1014681716 1261 dbSNP
rs1162184996 1263 dbSNP
rs902823697 1270 dbSNP
rs960058499 1271 dbSNP
rs1026254140 1272 dbSNP
rs185223612 1279 dbSNP
rs1259854130 1288 dbSNP
rs899247484 1291 dbSNP
rs572699344 1299 dbSNP
rs1037837252 1301 dbSNP
rs1253424260 1305 dbSNP
rs755684494 1308 dbSNP
rs889380764 1309 dbSNP
rs1260861881 1310 dbSNP
rs1437593619 1319 dbSNP
rs1039929856 1333 dbSNP
rs1052053556 1336 dbSNP
rs933552289 1352 dbSNP
rs909316767 1355 dbSNP
rs1049104938 1356 dbSNP
rs1270043340 1358 dbSNP
rs1375323354 1365 dbSNP
rs929314749 1365 dbSNP
rs1302385232 1367 dbSNP
rs1312449791 1370 dbSNP
rs1355777754 1371 dbSNP
rs919214079 1379 dbSNP
rs1285276946 1381 dbSNP
rs1460492451 1382 dbSNP
rs559164579 1393 dbSNP
rs759848 1393 dbSNP
rs1456374223 1394 dbSNP
rs747756541 1396 dbSNP
rs1052765693 1405 dbSNP
rs972051796 1413 dbSNP
rs1267836398 1417 dbSNP
rs1434642896 1420 dbSNP
rs934408349 1422 dbSNP
rs1377216070 1428 dbSNP
rs991637916 1429 dbSNP
rs142204632 1430 dbSNP
rs957503047 1432 dbSNP
rs34765620 1433 dbSNP
rs1366943305 1435 dbSNP
rs998572599 1447 dbSNP
rs1323529982 1469 dbSNP
rs979019249 1471 dbSNP
rs772871679 1477 dbSNP
rs566148114 1479 dbSNP
rs1385391641 1481 dbSNP
rs992781627 1483 dbSNP
rs1322392458 1484 dbSNP
rs759847 1485 dbSNP
rs998142369 1489 dbSNP
rs1259396508 1491 dbSNP
rs1315488941 1506 dbSNP
rs528267054 1511 dbSNP
rs1164925499 1513 dbSNP
rs1460411922 1514 dbSNP
rs563942495 1515 dbSNP
rs181170080 1523 dbSNP
rs972000266 1526 dbSNP
rs1489343482 1527 dbSNP
rs148797555 1533 dbSNP
rs963450114 1537 dbSNP
rs1268522908 1541 dbSNP
rs1047919098 1545 dbSNP
rs563464179 1546 dbSNP
rs889315082 1554 dbSNP
rs1166126129 1555 dbSNP
rs1352053406 1563 dbSNP
rs1005351972 1564 dbSNP
rs888243919 1564 dbSNP
rs1030915674 1565 dbSNP
rs541794560 1571 dbSNP
rs1212082985 1572 dbSNP
rs929450748 1574 dbSNP
rs1213408530 1580 dbSNP
rs1046134499 1586 dbSNP
rs542424376 1587 dbSNP
rs1052770695 1592 dbSNP
rs1290716039 1597 dbSNP
rs916168466 1599 dbSNP
rs574392471 1605 dbSNP
rs934289321 1610 dbSNP
rs866641047 1616 dbSNP
rs1229642247 1620 dbSNP
rs957535228 1623 dbSNP
rs904285054 1627 dbSNP
rs1300792732 1658 dbSNP
rs1042840009 1662 dbSNP
rs1422556754 1663 dbSNP
rs1163464266 1682 dbSNP
rs977201786 1685 dbSNP
rs553103576 1688 dbSNP
rs1299663672 1691 dbSNP
rs1029353978 1695 dbSNP
rs948455077 1696 dbSNP
rs976840147 1699 dbSNP
rs573807358 1712 dbSNP
rs1369911973 1718 dbSNP
rs1314230032 1730 dbSNP
rs1169190008 1732 dbSNP
rs541133214 1734 dbSNP
rs1354161551 1738 dbSNP
rs1218430020 1742 dbSNP
rs1018154266 1746 dbSNP
rs1431374079 1747 dbSNP
rs1393101306 1750 dbSNP
rs1005384543 1756 dbSNP
rs1239251375 1762 dbSNP
rs1482290695 1762 dbSNP
rs888320764 1763 dbSNP
rs1171027467 1765 dbSNP
rs993061926 1766 dbSNP
rs938609048 1768 dbSNP
rs1247305362 1769 dbSNP
rs993628294 1770 dbSNP
rs1405408894 1771 dbSNP
rs751826552 1772 dbSNP
rs775658570 1773 dbSNP
rs1251700542 1778 dbSNP
rs1206576141 1780 dbSNP
rs1242126308 1781 dbSNP
rs1306777909 1788 dbSNP
rs1220059102 1805 dbSNP
rs1350277953 1805 dbSNP
rs1280932921 1815 dbSNP
rs963376983 1816 dbSNP
rs1016660929 1817 dbSNP
rs1239384564 1818 dbSNP
rs986273244 1821 dbSNP
rs1491182256 1822 dbSNP
rs536351381 1823 dbSNP
rs577476744 1823 dbSNP
rs953581090 1825 dbSNP
rs1426747248 1832 dbSNP
rs1467831282 1833 dbSNP
rs1175070748 1834 dbSNP
rs559208488 1837 dbSNP
rs1236219871 1841 dbSNP
rs997647982 1842 dbSNP
rs1334965652 1855 dbSNP
rs1436851291 1856 dbSNP
rs537709412 1856 dbSNP
rs1365740487 1858 dbSNP
rs770178948 1862 dbSNP
rs1223040578 1863 dbSNP
rs746284404 1864 dbSNP
rs570305131 1866 dbSNP
rs1258762151 1877 dbSNP
rs936229014 1877 dbSNP
rs544627270 1878 dbSNP
rs977567758 1882 dbSNP
rs1452550634 1890 dbSNP
rs1201451953 1894 dbSNP
rs1001102522 1901 dbSNP
rs536626505 1913 dbSNP
rs144322186 1914 dbSNP
rs948531865 1920 dbSNP
rs1198113741 1926 dbSNP
rs976492461 1931 dbSNP
rs747037682 1934 dbSNP
rs964051311 1936 dbSNP
rs1166092543 1937 dbSNP
rs1017891719 1940 dbSNP
rs1174574918 1946 dbSNP
rs78333734 1947 dbSNP
rs547438578 1949 dbSNP
rs532479691 1950 dbSNP
rs1279022694 1952 dbSNP
rs1342464162 1952 dbSNP
rs919080155 1962 dbSNP
rs557881814 1964 dbSNP
rs1484331435 1967 dbSNP
rs1212058202 1969 dbSNP
rs1025458006 1976 dbSNP
rs994427847 1976 dbSNP
rs1484234549 1992 dbSNP
rs149617987 1994 dbSNP
rs1443398649 1999 dbSNP
rs758262584 2003 dbSNP
rs1014302855 2004 dbSNP
rs1190383198 2006 dbSNP
rs1372482853 2011 dbSNP
rs1473070107 2015 dbSNP
rs1164889748 2024 dbSNP
rs1363512386 2029 dbSNP
rs1423694676 2030 dbSNP
rs1299033365 2032 dbSNP
rs1362683898 2033 dbSNP
rs909251475 2034 dbSNP
rs1380656975 2035 dbSNP
rs1317698457 2042 dbSNP
rs534339497 2047 dbSNP
rs1341633031 2049 dbSNP
rs1247663213 2051 dbSNP
rs1203065758 2056 dbSNP
rs1359182665 2057 dbSNP
rs1327856625 2060 dbSNP
rs986504912 2079 dbSNP
rs953493937 2080 dbSNP
rs1286359648 2083 dbSNP
rs1486631310 2088 dbSNP
rs1230088717 2089 dbSNP
rs16860324 2094 dbSNP
rs976259320 2097 dbSNP
rs565787432 2100 dbSNP
rs1041944539 2102 dbSNP
rs376587267 2102 dbSNP
rs1336397167 2104 dbSNP
rs1382447834 2106 dbSNP
rs946212193 2106 dbSNP
rs1451854248 2108 dbSNP
rs922754302 2119 dbSNP
rs976946049 2120 dbSNP
rs538822368 2121 dbSNP
rs1397798763 2128 dbSNP
rs910918211 2131 dbSNP
rs1031155940 2132 dbSNP
rs1001156179 2141 dbSNP
rs968695780 2144 dbSNP
rs1160033650 2145 dbSNP
rs983735573 2146 dbSNP
rs1311876559 2148 dbSNP
rs1021298689 2149 dbSNP
rs1412229214 2150 dbSNP
rs4321562 2152 dbSNP
rs918517157 2156 dbSNP
rs972642945 2157 dbSNP
rs1345113078 2158 dbSNP
rs1205009855 2162 dbSNP
rs138202548 2163 dbSNP
rs1179066181 2168 dbSNP
rs1239810520 2176 dbSNP
rs536066295 2176 dbSNP
rs753628576 2180 dbSNP
rs1024807890 2181 dbSNP
rs188452392 2184 dbSNP
rs570216333 2187 dbSNP
rs1014782865 2189 dbSNP
rs1174340554 2190 dbSNP
rs184139931 2192 dbSNP
rs1034410132 2193 dbSNP
rs191276799 2199 dbSNP
rs79070107 2208 dbSNP
rs760435906 2213 dbSNP
rs1042361644 2219 dbSNP
rs1380985182 2220 dbSNP
rs1260667029 2224 dbSNP
rs1322162270 2226 dbSNP
rs941966906 2229 dbSNP
rs1376357344 2231 dbSNP
rs909085967 2233 dbSNP
rs1433109549 2235 dbSNP
rs1010483622 2239 dbSNP
rs186678596 2241 dbSNP
rs1041205948 2242 dbSNP
rs910991788 2242 dbSNP
rs532013230 2245 dbSNP
rs1458872514 2250 dbSNP
rs1173465371 2262 dbSNP
rs1353269161 2274 dbSNP
rs1348273065 2278 dbSNP
rs931944226 2284 dbSNP
rs1048106311 2286 dbSNP
rs565004230 2289 dbSNP
rs976187213 2296 dbSNP
rs543982081 2302 dbSNP
rs575983149 2311 dbSNP
rs930988954 2312 dbSNP
rs1416334006 2313 dbSNP
rs924138948 2317 dbSNP
rs918214260 2322 dbSNP
rs973100376 2323 dbSNP
rs1448458630 2325 dbSNP
rs1265846605 2327 dbSNP
rs767151351 2330 dbSNP
rs1248224241 2334 dbSNP
rs970663845 2344 dbSNP
rs1190163430 2349 dbSNP
rs184561393 2352 dbSNP
rs979561891 2353 dbSNP
rs1245630235 2358 dbSNP
rs533154867 2360 dbSNP
rs4686710 2367 dbSNP
rs1272166965 2368 dbSNP
rs1227360717 2372 dbSNP
rs1012488352 2373 dbSNP
rs1423066477 2374 dbSNP
rs958639396 2375 dbSNP
rs1306002579 2377 dbSNP
rs1035317006 2388 dbSNP
rs760974238 2389 dbSNP
rs572068210 2393 dbSNP
rs1365490835 2398 dbSNP
rs897547509 2405 dbSNP
rs775625996 2407 dbSNP
rs1000239069 2419 dbSNP
rs1437744433 2424 dbSNP
rs1352151076 2428 dbSNP
rs147075178 2433 dbSNP
rs1243495819 2437 dbSNP
rs1291393312 2439 dbSNP
rs1167306214 2443 dbSNP
rs1488725471 2444 dbSNP
rs968744205 2446 dbSNP
rs538674369 2450 dbSNP
rs770820831 2456 dbSNP
rs1429487663 2458 dbSNP
rs1006445966 2460 dbSNP
rs1182963041 2462 dbSNP
rs1020274753 2467 dbSNP
rs16860318 2473 dbSNP
rs1050798886 2478 dbSNP
rs749165836 2479 dbSNP
rs1041672045 2480 dbSNP
rs1007028394 2491 dbSNP
rs1431109121 2491 dbSNP
rs549902656 2493 dbSNP
rs901882895 2495 dbSNP
rs1040389780 2497 dbSNP
rs776998677 2510 dbSNP
rs935409680 2511 dbSNP
rs1489200853 2513 dbSNP
rs1384895772 2515 dbSNP
rs923981920 2516 dbSNP
rs1048135310 2519 dbSNP
rs773271412 2525 dbSNP
rs77281551 2530 dbSNP
rs114618495 2536 dbSNP
rs548422408 2541 dbSNP
rs1316417049 2542 dbSNP
rs960980862 2554 dbSNP
rs1035328336 2559 dbSNP
rs1300626391 2560 dbSNP
rs981036541 2563 dbSNP
rs961790527 2564 dbSNP
rs1471329370 2565 dbSNP
rs1219855011 2567 dbSNP
rs200593257 2568 dbSNP
rs1405342715 2572 dbSNP
rs1014600764 2575 dbSNP
rs193115152 2576 dbSNP
rs1408256786 2577 dbSNP
rs73175602 2584 dbSNP
rs547396650 2589 dbSNP
rs532181802 2590 dbSNP
rs564965542 2592 dbSNP
rs780781209 2593 dbSNP
rs1219928820 2595 dbSNP
rs867029454 2600 dbSNP
rs1020729123 2604 dbSNP
rs1321444724 2607 dbSNP
rs188550983 2610 dbSNP
rs1040402595 2611 dbSNP
rs935296605 2615 dbSNP
rs1434387723 2620 dbSNP
rs1230874296 2621 dbSNP
rs1409222758 2634 dbSNP
rs576534207 2636 dbSNP
rs1019875474 2637 dbSNP
rs142992079 2646 dbSNP
rs1430815937 2646 dbSNP
rs543270824 2647 dbSNP
rs183344663 2648 dbSNP
rs1326580403 2657 dbSNP
rs1353668224 2657 dbSNP
rs1198547731 2670 dbSNP
rs1044221781 2683 dbSNP
rs946818039 2684 dbSNP
rs1482826909 2686 dbSNP
rs916767458 2688 dbSNP
rs889992208 2692 dbSNP
rs1211158557 2701 dbSNP
rs1222981574 2702 dbSNP
rs1342064175 2709 dbSNP
rs1194483267 2713 dbSNP
rs77055012 2721 dbSNP
rs995247130 2722 dbSNP
rs1222784124 2726 dbSNP
rs1228266711 2730 dbSNP
rs1489675220 2732 dbSNP
rs1198050151 2737 dbSNP
rs1351683004 2740 dbSNP
rs1422076351 2743 dbSNP
rs1309837950 2744 dbSNP
rs1166038518 2748 dbSNP
rs1418546778 2753 dbSNP
rs1394633862 2755 dbSNP
rs538637719 2757 dbSNP
rs896920014 2759 dbSNP
rs1305262467 2774 dbSNP
rs1037159684 2775 dbSNP
rs939607084 2778 dbSNP
rs949087907 2780 dbSNP
rs896099953 2784 dbSNP
rs928194060 2788 dbSNP
rs981083921 2793 dbSNP
rs541074274 2801 dbSNP
rs1467268249 2802 dbSNP
rs1055083485 2803 dbSNP
rs1270065679 2805 dbSNP
rs1157796675 2813 dbSNP
rs1457663151 2816 dbSNP
rs937901642 2823 dbSNP
rs1414049650 2824 dbSNP
rs1185391715 2826 dbSNP
rs577661293 2832 dbSNP
rs1014526781 2834 dbSNP
rs1448164490 2835 dbSNP
rs1256678302 2838 dbSNP
rs984987908 2840 dbSNP
rs192025176 2844 dbSNP
rs1462843408 2846 dbSNP
rs1445080701 2848 dbSNP
rs1266273022 2855 dbSNP
rs1383664843 2856 dbSNP
rs755772548 2858 dbSNP
rs537960808 2859 dbSNP
rs1387246335 2866 dbSNP
rs187122656 2868 dbSNP
rs901780020 2877 dbSNP
rs1454961132 2878 dbSNP
rs1313331993 2881 dbSNP
rs1359110535 2889 dbSNP
rs989270442 2905 dbSNP
rs569795985 2908 dbSNP
rs999424753 2911 dbSNP
rs548104077 2919 dbSNP
rs138994557 2925 dbSNP
rs954283567 2929 dbSNP
rs1461690852 2935 dbSNP
rs779718282 2936 dbSNP
rs1185308007 2946 dbSNP
rs58388826 2951 dbSNP
rs72003092 2951 dbSNP
rs995644271 2954 dbSNP
rs897281280 2957 dbSNP
rs1043724057 2958 dbSNP
rs1457288575 2959 dbSNP
rs1011414548 2960 dbSNP
rs1386571244 2961 dbSNP
rs373472956 2962 dbSNP
rs750060215 2964 dbSNP
rs74542454 2965 dbSNP
rs1335247017 2968 dbSNP
rs1382504877 2970 dbSNP
rs1013748189 2972 dbSNP
rs1307338834 2976 dbSNP
rs1457349778 2977 dbSNP
rs1337141853 2979 dbSNP
rs1236307162 2986 dbSNP
rs182835373 2986 dbSNP
rs1368780535 2988 dbSNP
rs1323563698 2990 dbSNP
rs563413121 2992 dbSNP
rs1482841483 2993 dbSNP
rs939491065 3009 dbSNP
rs1417522672 3015 dbSNP
rs1430088475 3016 dbSNP
rs1481421202 3020 dbSNP
rs1174991628 3022 dbSNP
rs1054781159 3027 dbSNP
rs937934188 3031 dbSNP
rs1300235500 3035 dbSNP
rs767343847 3038 dbSNP
rs903791648 3039 dbSNP
rs1043637904 3041 dbSNP
rs1287253015 3043 dbSNP
rs1037271527 3048 dbSNP
rs532143295 3050 dbSNP
rs1281363973 3056 dbSNP
rs1311509988 3064 dbSNP
rs1208521556 3068 dbSNP
rs1053247221 3080 dbSNP
rs376257973 3080 dbSNP
rs944113476 3081 dbSNP
rs571268128 3082 dbSNP
rs1266359427 3086 dbSNP
rs912592397 3089 dbSNP
rs1269865608 3090 dbSNP
rs761355152 3093 dbSNP
rs1197338416 3094 dbSNP
rs1425135081 3098 dbSNP
rs140868850 3100 dbSNP
rs532363779 3103 dbSNP
rs1296397832 3104 dbSNP
rs1461736522 3109 dbSNP
rs1307093868 3111 dbSNP
rs746073690 3113 dbSNP
rs920184798 3113 dbSNP
rs1435448294 3115 dbSNP
rs1300708346 3117 dbSNP
rs1366238162 3118 dbSNP
rs984440320 3125 dbSNP
rs1305620617 3130 dbSNP
rs1327608775 3130 dbSNP
rs189663792 3133 dbSNP
rs1292843645 3134 dbSNP
rs1016167451 3138 dbSNP
rs1386105781 3142 dbSNP
rs1391328161 3144 dbSNP
rs1013363540 3148 dbSNP
rs921678420 3151 dbSNP
rs1427569705 3152 dbSNP
rs543745729 3158 dbSNP
rs960717209 3158 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000453386.2 | 3UTR | UCAAGCUCAAGUUUCUCACUAAAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000453386.2 | 3UTR | UCAAGCUCAAGUUUCUCACUAA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
280 hsa-miR-4282 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT057628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT060732 RPS3 ribosomal protein S3 2 2
MIRT063371 ETNK1 ethanolamine kinase 1 2 2
MIRT066257 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT070774 HIF1A hypoxia inducible factor 1 alpha subunit 2 2
MIRT070871 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT078056 PCTP phosphatidylcholine transfer protein 2 2
MIRT078408 DCAF7 DDB1 and CUL4 associated factor 7 2 4
MIRT084059 PPP1R3D protein phosphatase 1 regulatory subunit 3D 2 2
MIRT093537 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT096072 SFXN1 sideroflexin 1 2 2
MIRT098316 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit 2 2
MIRT100493 UHRF1BP1 UHRF1 binding protein 1 2 2
MIRT102254 HBP1 HMG-box transcription factor 1 2 4
MIRT105318 VPS37A VPS37A, ESCRT-I subunit 2 2
MIRT114143 MZT1 mitotic spindle organizing protein 1 2 4
MIRT114873 DICER1 dicer 1, ribonuclease III 2 2
MIRT134683 PNRC2 proline rich nuclear receptor coactivator 2 2 2
MIRT137640 RCOR1 REST corepressor 1 2 2
MIRT155449 CCNT2 cyclin T2 2 4
MIRT165656 DCTN4 dynactin subunit 4 2 2
MIRT177570 CSTF2T cleavage stimulation factor subunit 2 tau variant 2 4
MIRT188514 E2F7 E2F transcription factor 7 2 10
MIRT193019 TMOD3 tropomodulin 3 2 4
MIRT195823 GADD45A growth arrest and DNA damage inducible alpha 2 2
MIRT195885 DEPDC1 DEP domain containing 1 2 6
MIRT206029 NUP50 nucleoporin 50 2 6
MIRT212148 CLCN3 chloride voltage-gated channel 3 2 2
MIRT213999 DCP2 decapping mRNA 2 2 2
MIRT214650 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 2 2
MIRT221568 CBX3 chromobox 3 2 2
MIRT224544 ZNF623 zinc finger protein 623 2 2
MIRT227654 SET SET nuclear proto-oncogene 2 2
MIRT229992 CHIC1 cysteine rich hydrophobic domain 1 2 2
MIRT238968 QKI QKI, KH domain containing RNA binding 2 2
MIRT239825 ACTB actin beta 2 2
MIRT241084 ZXDA zinc finger, X-linked, duplicated A 2 4
MIRT244852 ZBTB5 zinc finger and BTB domain containing 5 2 2
MIRT264534 TARDBP TAR DNA binding protein 2 2
MIRT271438 SKI SKI proto-oncogene 2 2
MIRT271597 ENAH ENAH, actin regulator 2 2
MIRT294332 ZNF264 zinc finger protein 264 2 2
MIRT296341 PARD6B par-6 family cell polarity regulator beta 2 2
MIRT301715 TEF TEF, PAR bZIP transcription factor 2 2
MIRT308549 ZNF654 zinc finger protein 654 2 2
MIRT313866 DEPDC1B DEP domain containing 1B 2 2
MIRT315529 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT321066 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT343777 NUTF2 nuclear transport factor 2 2 2
MIRT359109 MAP1B microtubule associated protein 1B 2 2
MIRT397393 GOLGA3 golgin A3 2 4
MIRT400822 CPEB2 cytoplasmic polyadenylation element binding protein 2 2 2
MIRT442171 DSEL dermatan sulfate epimerase-like 2 2
MIRT442777 JAG1 jagged 1 2 2
MIRT442862 SCARF1 scavenger receptor class F member 1 2 4
MIRT442919 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 2 2
MIRT444567 TRA2B transformer 2 beta homolog 2 2
MIRT444718 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT445018 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445853 LRRC1 leucine rich repeat containing 1 2 2
MIRT446242 HELZ helicase with zinc finger 2 2
MIRT446542 GOLGA8B golgin A8 family member B 2 2
MIRT446643 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT446948 ZMAT3 zinc finger matrin-type 3 2 4
MIRT447061 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447327 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447995 CDX1 caudal type homeobox 1 2 2
MIRT448543 RHEBP1 RHEB pseudogene 1 2 6
MIRT448752 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448772 GOLGA8A golgin A8 family member A 2 2
MIRT449342 WDR26 WD repeat domain 26 2 2
MIRT450011 SLC16A6 solute carrier family 16 member 6 2 4
MIRT450229 PCNX pecanex homolog 1 2 2
MIRT450340 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450381 MSI2 musashi RNA binding protein 2 2 2
MIRT450759 PGGT1B protein geranylgeranyltransferase type I subunit beta 2 2
MIRT450809 NRCAM neuronal cell adhesion molecule 2 2
MIRT450947 ATAD2 ATPase family, AAA domain containing 2 2 2
MIRT459095 CCPG1 cell cycle progression 1 2 2
MIRT462428 TWISTNB TWIST neighbor 2 2
MIRT465200 TROVE2 TROVE domain family member 2 2 4
MIRT467382 SON SON DNA binding protein 2 4
MIRT468546 SERP1 stress associated endoplasmic reticulum protein 1 2 2
MIRT471506 PDE4D phosphodiesterase 4D 2 2
MIRT471981 NR3C1 nuclear receptor subfamily 3 group C member 1 2 2
MIRT474478 KLHL11 kelch like family member 11 2 8
MIRT475011 KANSL1 KAT8 regulatory NSL complex subunit 1 2 8
MIRT480341 C5orf51 chromosome 5 open reading frame 51 2 2
MIRT482696 TEX9 testis expressed 9 2 6
MIRT483462 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 2 6
MIRT485623 FAM217B family with sequence similarity 217 member B 2 2
MIRT485714 CASP16 caspase 16, pseudogene 2 8
MIRT486279 SEC23A Sec23 homolog A, coat complex II component 2 2
MIRT491000 PEBP1 phosphatidylethanolamine binding protein 1 2 4
MIRT492594 PPIL4 peptidylprolyl isomerase like 4 2 2
MIRT493365 KIF5B kinesin family member 5B 2 2
MIRT494316 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT495208 EDN3 endothelin 3 2 2
MIRT497011 TCF15 transcription factor 15 2 2
MIRT498512 FRK fyn related Src family tyrosine kinase 2 2
MIRT498778 PARP15 poly(ADP-ribose) polymerase family member 15 2 2
MIRT501045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase 2 6
MIRT502939 CDC37L1 cell division cycle 37 like 1 2 8
MIRT504806 VHL von Hippel-Lindau tumor suppressor 2 6
MIRT505656 SHMT1 serine hydroxymethyltransferase 1 2 6
MIRT505964 RAB5C RAB5C, member RAS oncogene family 2 6
MIRT506322 OTUD4 OTU deubiquitinase 4 2 4
MIRT506803 KLHL15 kelch like family member 15 2 6
MIRT506917 KBTBD8 kelch repeat and BTB domain containing 8 2 4
MIRT507400 EMC7 ER membrane protein complex subunit 7 2 8
MIRT507471 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 2 6
MIRT508058 ATP13A3 ATPase 13A3 2 4
MIRT508135 AMD1 adenosylmethionine decarboxylase 1 2 2
MIRT509895 RPS23 ribosomal protein S23 2 4
MIRT510881 RAN RAN, member RAS oncogene family 2 8
MIRT513766 PEX5L peroxisomal biogenesis factor 5 like 2 4
MIRT516898 COPS8 COP9 signalosome subunit 8 2 2
MIRT518703 TIMD4 T-cell immunoglobulin and mucin domain containing 4 2 4
MIRT520429 TTPAL alpha tocopherol transfer protein like 2 6
MIRT521843 PNISR PNN interacting serine and arginine rich protein 2 4
MIRT522116 NUDT3 nudix hydrolase 3 2 4
MIRT525467 TMPRSS12 transmembrane protease, serine 12 2 2
MIRT525583 MTRNR2L7 MT-RNR2-like 7 2 2
MIRT525906 BUB1 BUB1 mitotic checkpoint serine/threonine kinase 2 2
MIRT526072 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT526232 MTRNR2L5 MT-RNR2-like 5 2 4
MIRT526455 FAM71F2 family with sequence similarity 71 member F2 2 4
MIRT526515 POU5F1B POU class 5 homeobox 1B 2 2
MIRT528032 FEZ2 fasciculation and elongation protein zeta 2 2 2
MIRT528422 MRPS16 mitochondrial ribosomal protein S16 2 2
MIRT528995 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 2 4
MIRT529311 ATRNL1 attractin like 1 2 2
MIRT529376 SKP1 S-phase kinase associated protein 1 2 4
MIRT530015 SRRM1 serine and arginine repetitive matrix 1 2 2
MIRT530089 FMN2 formin 2 2 2
MIRT530942 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 2 2
MIRT531229 HIST1H2BD histone cluster 1 H2B family member d 2 2
MIRT533088 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 2 2
MIRT533299 USP46 ubiquitin specific peptidase 46 2 2
MIRT533318 UNKL unkempt family like zinc finger 2 2
MIRT533721 TMEM30A transmembrane protein 30A 2 2
MIRT534096 AZF1 azoospermia factor 1 2 2
MIRT534188 SLC7A11 solute carrier family 7 member 11 2 2
MIRT534493 SAR1B secretion associated Ras related GTPase 1B 2 2
MIRT536077 MBOAT2 membrane bound O-acyltransferase domain containing 2 2 2
MIRT536242 LRIG2 leucine rich repeats and immunoglobulin like domains 2 2 2
MIRT537524 FAM104A family with sequence similarity 104 member A 2 2
MIRT538088 DGKH diacylglycerol kinase eta 2 2
MIRT538475 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT538853 BTG1 BTG anti-proliferation factor 1 2 4
MIRT539075 GDNF glial cell derived neurotrophic factor 2 2
MIRT539480 ACVR2B activin A receptor type 2B 2 4
MIRT540210 ARHGAP18 Rho GTPase activating protein 18 2 2
MIRT541940 TSPAN2 tetraspanin 2 2 2
MIRT543812 COCH cochlin 2 2
MIRT545120 PDZRN4 PDZ domain containing ring finger 4 2 2
MIRT545571 GIMAP4 GTPase, IMAP family member 4 2 2
MIRT545989 XKR4 XK related 4 2 2
MIRT547213 PANK3 pantothenate kinase 3 2 4
MIRT547740 KIAA1468 KIAA1468 2 2
MIRT548022 GRB2 growth factor receptor bound protein 2 2 4
MIRT548032 GOLIM4 golgi integral membrane protein 4 2 2
MIRT548102 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 4
MIRT548217 FKBP1A FK506 binding protein 1A 2 2
MIRT548588 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT548953 CDC27 cell division cycle 27 2 2
MIRT549072 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT550368 INCENP inner centromere protein 2 6
MIRT550546 MYZAP myocardial zonula adherens protein 2 2
MIRT551491 TMEM192 transmembrane protein 192 2 4
MIRT553078 UEVLD UEV and lactate/malate dehyrogenase domains 2 2
MIRT554104 SMU1 DNA replication regulator and spliceosomal factor 2 2
MIRT555127 PTPRG protein tyrosine phosphatase, receptor type G 2 2
MIRT555477 POC1B-GALNT4 POC1B-GALNT4 readthrough 2 2
MIRT555978 NPTN neuroplastin 2 2
MIRT557011 HPRT1 hypoxanthine phosphoribosyltransferase 1 2 2
MIRT557706 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 2 2
MIRT558333 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 2 4
MIRT558488 DBN1 drebrin 1 2 2
MIRT559942 ZNF567 zinc finger protein 567 2 2
MIRT561127 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 2 2
MIRT561791 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562438 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT563102 PABPC4L poly(A) binding protein cytoplasmic 4 like 2 2
MIRT563212 ZNF813 zinc finger protein 813 2 2
MIRT563426 KIF3A kinesin family member 3A 2 2
MIRT563473 SPIN4 spindlin family member 4 2 2
MIRT564015 HSPA4 heat shock protein family A (Hsp70) member 4 2 4
MIRT564117 ZYG11B zyg-11 family member B, cell cycle regulator 2 2
MIRT564223 SDE2 SDE2 telomere maintenance homolog 2 2
MIRT564503 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 2 2
MIRT564515 DUSP3 dual specificity phosphatase 3 2 2
MIRT564811 ZBTB21 zinc finger and BTB domain containing 21 2 2
MIRT565265 TPD52 tumor protein D52 2 2
MIRT566012 RHOB ras homolog family member B 2 2
MIRT566216 PTMA prothymosin, alpha 2 2
MIRT566638 NFYA nuclear transcription factor Y subunit alpha 2 2
MIRT566821 MAPK8 mitogen-activated protein kinase 8 2 2
MIRT566948 LEPROT leptin receptor overlapping transcript 2 2
MIRT567290 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B 2 2
MIRT567895 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT568731 MTRNR2L3 MT-RNR2-like 3 2 2
MIRT571263 ZNF239 zinc finger protein 239 2 2
MIRT572593 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 2 2
MIRT573827 TGOLN2 trans-golgi network protein 2 2 2
MIRT576391 Fhl2 four and a half LIM domains 2 2 2
MIRT609901 SMS spermine synthase 2 2
MIRT613710 ELMSAN1 ELM2 and Myb/SANT domain containing 1 2 2
MIRT614406 ADAT1 adenosine deaminase, tRNA specific 1 2 2
MIRT615042 DCX doublecortin 2 2
MIRT617514 C5orf45 MRN complex interacting protein 2 2
MIRT619476 PRDM10 PR/SET domain 10 2 2
MIRT620349 TLN1 talin 1 2 2
MIRT620910 PLA2G7 phospholipase A2 group VII 2 2
MIRT622131 SP4 Sp4 transcription factor 2 2
MIRT622955 OTUD7B OTU deubiquitinase 7B 2 2
MIRT623351 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 2 2
MIRT623619 INTU inturned planar cell polarity protein 2 2
MIRT624409 CCDC171 coiled-coil domain containing 171 2 2
MIRT625171 CCS copper chaperone for superoxide dismutase 2 2
MIRT625685 RPP40 ribonuclease P/MRP subunit p40 2 2
MIRT625875 ALDH18A1 aldehyde dehydrogenase 18 family member A1 2 2
MIRT626002 FAM107A family with sequence similarity 107 member A 2 2
MIRT626872 HRH4 histamine receptor H4 2 4
MIRT628220 FKBP9 FK506 binding protein 9 2 2
MIRT628265 DIO2 iodothyronine deiodinase 2 2 2
MIRT628402 C8orf37 chromosome 8 open reading frame 37 2 2
MIRT630564 C3orf36 chromosome 3 open reading frame 36 2 4
MIRT631577 RASSF9 Ras association domain family member 9 2 2
MIRT635730 CCDC58 coiled-coil domain containing 58 2 2
MIRT636224 SLC8A1 solute carrier family 8 member A1 2 2
MIRT636613 CLIC5 chloride intracellular channel 5 2 2
MIRT638899 CDK9 cyclin dependent kinase 9 2 2
MIRT640167 ATXN7L1 ataxin 7 like 1 2 2
MIRT642070 GTDC1 glycosyltransferase like domain containing 1 2 2
MIRT643034 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT644572 SPOP speckle type BTB/POZ protein 2 2
MIRT644954 IFNB1 interferon beta 1 2 2
MIRT645948 TTF2 transcription termination factor 2 2 2
MIRT646440 XRCC2 X-ray repair cross complementing 2 2 2
MIRT647896 EPN2 epsin 2 2 2
MIRT648276 ZNF582 zinc finger protein 582 2 2
MIRT649381 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 2 2
MIRT650254 CD68 CD68 molecule 2 2
MIRT650333 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT651707 VMP1 vacuole membrane protein 1 2 2
MIRT651774 VASP vasodilator stimulated phosphoprotein 2 2
MIRT653144 SRPK2 SRSF protein kinase 2 2 2
MIRT654112 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT654161 RORB RAR related orphan receptor B 2 2
MIRT655716 MLF2 myeloid leukemia factor 2 2 2
MIRT657476 HDAC4 histone deacetylase 4 2 2
MIRT658095 FOXO1 forkhead box O1 2 2
MIRT658860 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT658988 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 2 2
MIRT660767 ALDH6A1 aldehyde dehydrogenase 6 family member A1 2 2
MIRT661622 C2orf15 chromosome 2 open reading frame 15 2 2
MIRT661694 TFDP2 transcription factor Dp-2 2 2
MIRT662208 PLA2G4E phospholipase A2 group IVE 2 2
MIRT662443 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 2 2
MIRT664422 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT687505 NECAB1 N-terminal EF-hand calcium binding protein 1 2 2
MIRT689910 SOD2 superoxide dismutase 2 2 2
MIRT690781 PLA2G2C phospholipase A2 group IIC 2 2
MIRT698488 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 2 2
MIRT699685 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT700926 PDS5A PDS5 cohesin associated factor A 2 2
MIRT702258 LMNB1 lamin B1 2 2
MIRT703166 GPR137C G protein-coupled receptor 137C 2 2
MIRT703242 GNS glucosamine (N-acetyl)-6-sulfatase 2 2
MIRT704737 CENPQ centromere protein Q 2 2
MIRT707310 GLRX2 glutaredoxin 2 2 2
MIRT710021 KCNQ5 potassium voltage-gated channel subfamily Q member 5 2 2
MIRT712212 SCOC short coiled-coil protein 2 2
MIRT714742 SETBP1 SET binding protein 1 2 2
MIRT718268 ZNF749 zinc finger protein 749 2 2
MIRT720553 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 2 2
MIRT722248 RBM41 RNA binding motif protein 41 2 2
MIRT723767 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT723977 KIAA0146 scaffolding protein involved in DNA repair 1 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-4282 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)
hsa-miR-4282 Neoadjuvant chemotherapy sensitive tissue (breast cancer)

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