miRTarBase - #MIRT444594


—
pre-miRNA Information
pre-miRNA hsa-mir-203b   
Genomic Coordinates chr14: 104117418 - 104117503
Description Homo sapiens miR-203b stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-203b-3p
Sequence 54| UUGAACUGUUAAGAACCACUGGA |76
Evidence Experimental
Experiments Illumina
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 11 14 - 104117440 28550310 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1444131167 3 dbSNP
rs1307766631 8 dbSNP
rs527418519 12 dbSNP
rs771545143 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol TGFA   
Synonyms TFGA
Description transforming growth factor alpha
Transcript NM_001099691   
Other Transcripts NM_003236   
Expression
Putative miRNA Targets on TGFA
3'UTR of TGFA
(miRNA target sites are highlighted)		 
>TGFA|NM_001099691|3'UTR
   1 AGAGCCCAGAGGAGGAGTTTGGCCAGGTGGACTGTGGCAGATCAATAAAGAAAGGCTTCTTCAGGACAGCACTGCCAGAG
  81 ATGCCTGGGTGTGCCACAGACCTTCCTACTTGGCCTGTAATCACCTGTGCAGCCTTTTGTGGGCCTTCAAAACTCTGTCA
 161 AGAACTCCGTCTGCTTGGGGTTATTCAGTGTGACCTAGAGAAGAAATCAGCGGACCACGATTTCAAGACTTGTTAAAAAA
 241 GAACTGCAAAGAGACGGACTCCTGTTCACCTAGGTGAGGTGTGTGCAGCAGTTGGTGTCTGAGTCCACATGTGTGCAGTT
 321 GTCTTCTGCCAGCCATGGATTCCAGGCTATATATTTCTTTTTAATGGGCCACCTCCCCACAACAGAATTCTGCCCAACAC
 401 AGGAGATTTCTATAGTTATTGTTTTCTGTCATTTGCCTACTGGGGAAGAAAGTGAAGGAGGGGAAACTGTTTAATATCAC
 481 ATGAAGACCCTAGCTTTAAGAGAAGCTGTATCCTCTAACCACGAGACCCTCAACCAGCCCAACATCTTCCATGGACACAT
 561 GACATTGAAGACCATCCCAAGCTATCGCCACCCTTGGAGATGATGTCTTATTTATTAGATGGATAATGGTTTTATTTTTA
 641 ATCTCTTAAGTCAATGTAAAAAGTATAAAACCCCTTCAGACTTCTACATTAATGATGTATGTGTTGCTGACTGAAAAGCT
 721 ATACTGATTAGAAATGTCTGGCCTCTTCAAGACAGCTAAGGCTTGGGAAAAGTCTTCCAGGGTGCGGAGATGGAACCAGA
 801 GGCTGGGTTACTGGTAGGAATAAAGGTAGGGGTTCAGAAATGGTGCCATTGAAGCCACAAAGCCGGTAAATGCCTCAATA
 881 CGTTCTGGGAGAAAACTTAGCAAATCCATCAGCAGGGATCTGTCCCCTCTGTTGGGGAGAGAGGAAGAGTGTGTGTGTCT
 961 ACACAGGATAAACCCAATACATATTGTACTGCTCAGTGATTAAATGGGTTCACTTCCTCGTGAGCCCTCGGTAAGTATGT
1041 TTAGAAATAGAACATTAGCCACGAGCCATAGGCATTTCAGGCCAAATCCATGAAAGGGGGACCAGTCATTTATTTTCCAT
1121 TTTGTTGCTTGGTTGGTTTGTTGCTTTATTTTTAAAAGGAGAAGTTTAACTTTGCTATTTATTTTCGAGCACTAGGAAAA
1201 CTATTCCAGTAATTTTTTTTTCCTCATTTCCATTCAGGATGCCGGCTTTATTAACAAAAACTCTAACAAGTCACCTCCAC
1281 TATGTGGGTCTTCCTTTCCCCTCAAGAGAAGGAGCAATTGTTCCCCTGAGCATCTGGGTCCATCTGACCCATGGGGCCTG
1361 CCTGTGAGAAACAGTGGGTCCCTTCAAATACATAGTGGATAGCTCATCCCTAGGAATTTTCATTAAAATTTGGAAACAGA
1441 GTAATGAAGAAATAATATATAAACTCCTTATGTGAGGAAATGCTACTAATATCTGAAAAGTGAAAGATTTCTATGTATTA
1521 ACTCTTAAGTGCACCTAGCTTATTACATCGTGAAAGGTACATTTAAAATATGTTAAATTGGCTTGAAATTTTCAGAGAAT
1601 TTTGTCTTCCCCTAATTCTTCTTCCTTGGTCTGGAAGAACAATTTCTATGAATTTTCTCTTTATTTTTTTTTATAATTCA
1681 GACAATTCTATGACCCGTGTCTTCATTTTTGGCACTCTTATTTAACAATGCCACACCTGAAGCACTTGGATCTGTTCAGA
1761 GCTGACCCCCTAGCAACGTAGTTGACACAGCTCCAGGTTTTTAAATTACTAAAATAAGTTCAAGTTTACATCCCTTGGGC
1841 CAGATATGTGGGTTGAGGCTTGACTGTAGCATCCTGCTTAGAGACCAATCAACGGACACTGGTTTTTAGACCTCTATCAA
1921 TCAGTAGTTAGCATCCAAGAGACTTTGCAGAGGCGTAGGAATGAGGCTGGACAGATGGCGGAAGCAGAGGTTCCCTGCGA
2001 AGACTTGAGATTTAGTGTCTGTGAATGTTCTAGTTCCTAGGTCCAGCAAGTCACACCTGCCAGTGCCCTCATCCTTATGC
2081 CTGTAACACACATGCAGTGAGAGGCCTCACATATACGCCTCCCTAGAAGTGCCTTCCAAGTCAGTCCTTTGGAAACCAGC
2161 AGGTCTGAAAAAGAGGCTGCATCAATGCAAGCCTGGTTGGACCATTGTCCATGCCTCAGGATAGAACAGCCTGGCTTATT
2241 TGGGGATTTTTCTTCTAGAAATCAAATGACTGATAAGCATTGGATCCCTCTGCCATTTAATGGCAATGGTAGTCTTTGGT
2321 TAGCTGCAAAAATACTCCATTTCAAGTTAAAAATGCATCTTCTAATCCATCTCTGCAAGCTCCCTGTGTTTCCTTGCCCT
2401 TTAGAAAATGAATTGTTCACTACAATTAGAGAATCATTTAACATCCTGACCTGGTAAGCTGCCACACACCTGGCAGTGGG
2481 GAGCATCGCTGTTTCCAATGGCTCAGGAGACAATGAAAAGCCCCCATTTAAAAAAATAACAAACATTTTTTAAAAGGCCT
2561 CCAATACTCTTATGGAGCCTGGATTTTTCCCACTGCTCTACAGGCTGTGACTTTTTTTAAGCATCCTGACAGGAAATGTT
2641 TTCTTCTACATGGAAAGATAGACAGCAGCCAACCCTGATCTGGAAGACAGGGCCCCGGCTGGACACACGTGGAACCAAGC
2721 CAGGGATGGGCTGGCCATTGTGTCCCCGCAGGAGAGATGGGCAGAATGGCCCTAGAGTTCTTTTCCCTGAGAAAGGAGAA
2801 AAAGATGGGATTGCCACTCACCCACCCACACTGGTAAGGGAGGAGAATTTGTGCTTCTGGAGCTTCTCAAGGGATTGTGT
2881 TTTGCAGGTACAGAAAACTGCCTGTTATCTTCAAGCCAGGTTTTCGAGGGCACATGGGTCACCAGTTGCTTTTTCAGTCA
2961 ATTTGGCCGGGATGGACTAATGAGGCTCTAACACTGCTCAGGAGACCCCTGCCCTCTAGTTGGTTCTGGGCTTTGATCTC
3041 TTCCAACCTGCCCAGTCACAGAAGGAGGAATGACTCAAATGCCCAAAACCAAGAACACATTGCAGAAGTAAGACAAACAT
3121 GTATATTTTTAAATGTTCTAACATAAGACCTGTTCTCTCTAGCCATTGATTTACCAGGCTTTCTGAAAGATCTAGTGGTT
3201 CACACAGAGAGAGAGAGAGTACTGAAAAAGCAACTCCTCTTCTTAGTCTTAATAATTTACTAAAATGGTCAACTTTTCAT
3281 TATCTTTATTATAATAAACCTGATGCTTTTTTTTAGAACTCCTTACTCTGATGTCTGTATATGTTGCACTGAAAAGGTTA
3361 ATATTTAATGTTTTAATTTATTTTGTGTGGTAAGTTAATTTTGATTTCTGTAATGTGTTAATGTGATTAGCAGTTATTTT
3441 CCTTAATATCTGAATTATACTTAAAGAGTAGTGAGCAATATAAGACGCAATTGTGTTTTTCAGTAATGTGCATTGTTATT
3521 GAGTTGTACTGTACCTTATTTGGAAGGATGAAGGAATGAATCTTTTTTTCCTAAATCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGU-CACCAAGAAUUGUCAAGUu 5'
            || ||||  : |::||| ||| 
Target 5' gcCAGGTGGACTGTGGCAGATCAa 3'
 22 - 45 129.00 -18.50
2 
miRNA  3' agGUCACCAAGA--------AUUGUCAAGUu 5'
            |||   ||||        ||:::||||| 
Target 5' acCAGGCTTTCTGAAAGATCTAGTGGTTCAc 3'
 3173 - 3203 123.00 -15.90
3 
miRNA  3' aggucaCCAAGAAUU-----------GUCAAGUu 5'
                ||||:||||            |||||| 
Target 5' gctccaGGTTTTTAAATTACTAAAATAAGTTCAa 3'
 1790 - 1823 121.00 -15.42
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30469957 15 COSMIC
COSN31569114 32 COSMIC
COSN30184133 36 COSMIC
COSN4893475 86 COSMIC
COSN30105825 87 COSMIC
COSN31539259 137 COSMIC
COSN6558971 256 COSMIC
COSN5509588 749 COSMIC
COSN9385382 799 COSMIC
COSN25581553 1158 COSMIC
COSN20096837 1213 COSMIC
COSN30724556 1213 COSMIC
COSN30538374 1234 COSMIC
COSN26642867 1242 COSMIC
COSN31579394 1286 COSMIC
COSN8868285 1352 COSMIC
COSN5270370 1354 COSMIC
COSN31490538 1429 COSMIC
COSN20096835 1658 COSMIC
COSN20096834 1663 COSMIC
COSN10005949 1784 COSMIC
COSN9385381 2047 COSMIC
COSN15662465 2462 COSMIC
COSN5860948 2925 COSMIC
COSN17182121 3012 COSMIC
COSN31568968 3150 COSMIC
COSN31585611 3187 COSMIC
COSN7081759 3195 COSMIC
COSN27485247 3206 COSMIC
COSN23454059 3294 COSMIC
COSN30540949 3309 COSMIC
COSN30540944 3363 COSMIC
COSN31489756 3374 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs781974012 2 dbSNP
rs373415031 5 dbSNP
rs199990904 7 dbSNP
rs782027272 9 dbSNP
rs200314587 12 dbSNP
rs1226915092 19 dbSNP
rs782365865 23 dbSNP
rs782252830 24 dbSNP
rs373867308 27 dbSNP
rs782198691 35 dbSNP
rs562056696 36 dbSNP
rs782182983 41 dbSNP
rs905816398 43 dbSNP
rs1231605208 45 dbSNP
rs1272460316 49 dbSNP
rs1468898816 54 dbSNP
rs1259351439 55 dbSNP
rs1446236887 56 dbSNP
rs1193380277 77 dbSNP
rs548066305 87 dbSNP
rs1473936095 88 dbSNP
rs1163654391 91 dbSNP
rs1417744041 106 dbSNP
rs1462462080 110 dbSNP
rs1165537537 114 dbSNP
rs1383190040 115 dbSNP
rs1382018780 116 dbSNP
rs531617740 127 dbSNP
rs1342681686 128 dbSNP
rs189105998 129 dbSNP
rs1042858008 130 dbSNP
rs1335583391 141 dbSNP
rs183977492 142 dbSNP
rs1246839957 143 dbSNP
rs1258904900 157 dbSNP
rs1349599397 159 dbSNP
rs782607559 164 dbSNP
rs1484511951 165 dbSNP
rs1186560881 168 dbSNP
rs947217493 169 dbSNP
rs891850367 171 dbSNP
rs1058211 172 dbSNP
rs1190145960 178 dbSNP
rs11466282 179 dbSNP
rs912553618 180 dbSNP
rs1159559603 184 dbSNP
rs985491875 186 dbSNP
rs1433050317 192 dbSNP
rs1312522474 197 dbSNP
rs1356104893 204 dbSNP
rs1397863343 206 dbSNP
rs1304777599 209 dbSNP
rs540859733 211 dbSNP
rs1239472649 212 dbSNP
rs932916188 214 dbSNP
rs920173805 218 dbSNP
rs782247187 219 dbSNP
rs145891678 220 dbSNP
rs1209642052 223 dbSNP
rs192903653 246 dbSNP
rs1014602104 255 dbSNP
rs983143141 256 dbSNP
rs1249008954 261 dbSNP
rs1179853717 269 dbSNP
rs537274877 273 dbSNP
rs555328455 278 dbSNP
rs778413253 281 dbSNP
rs188130696 285 dbSNP
rs1360032544 289 dbSNP
rs1467635059 293 dbSNP
rs969968339 332 dbSNP
rs1395642104 351 dbSNP
rs1021975329 353 dbSNP
rs1391852548 353 dbSNP
rs1368437359 355 dbSNP
rs1233382523 365 dbSNP
rs1303676109 366 dbSNP
rs1011386194 376 dbSNP
rs1201790174 377 dbSNP
rs891616698 380 dbSNP
rs1250227938 382 dbSNP
rs1052969576 384 dbSNP
rs117870575 390 dbSNP
rs1240577752 396 dbSNP
rs891254677 398 dbSNP
rs782543869 410 dbSNP
rs1193464178 412 dbSNP
rs184396258 413 dbSNP
rs1435169020 419 dbSNP
rs1168641603 421 dbSNP
rs920160281 430 dbSNP
rs1333283392 445 dbSNP
rs1392277536 453 dbSNP
rs1439866857 460 dbSNP
rs1369503332 462 dbSNP
rs539544491 466 dbSNP
rs1294425815 468 dbSNP
rs1307500793 473 dbSNP
rs570573883 477 dbSNP
rs1260536808 483 dbSNP
rs370803405 499 dbSNP
rs908709480 518 dbSNP
rs992328024 522 dbSNP
rs3771523 523 dbSNP
rs754377920 524 dbSNP
rs1489682891 527 dbSNP
rs1058213 528 dbSNP
rs568140230 529 dbSNP
rs534566903 536 dbSNP
rs1478183964 538 dbSNP
rs1172977064 542 dbSNP
rs1415544962 547 dbSNP
rs979765205 549 dbSNP
rs11466285 552 dbSNP
rs1021315163 559 dbSNP
rs1011895202 564 dbSNP
rs955974619 566 dbSNP
rs1340806945 572 dbSNP
rs1401281011 578 dbSNP
rs34214089 580 dbSNP
rs532663035 586 dbSNP
rs1233154743 587 dbSNP
rs891181459 589 dbSNP
rs1323808052 591 dbSNP
rs11466286 597 dbSNP
rs996833931 601 dbSNP
rs11466287 609 dbSNP
rs1196162500 614 dbSNP
rs1255432571 617 dbSNP
rs782773431 623 dbSNP
rs1474930273 630 dbSNP
rs1038399453 649 dbSNP
rs1182311159 655 dbSNP
rs1415958477 659 dbSNP
rs1398725313 661 dbSNP
rs11466288 663 dbSNP
rs568489844 663 dbSNP
rs1421096677 666 dbSNP
rs940276863 666 dbSNP
rs1310715878 671 dbSNP
rs908804067 674 dbSNP
rs192420044 688 dbSNP
rs11466289 689 dbSNP
rs939536680 699 dbSNP
rs1382031795 705 dbSNP
rs1222395725 722 dbSNP
rs928364770 724 dbSNP
rs781964071 730 dbSNP
rs1219001302 734 dbSNP
rs1278463063 735 dbSNP
rs1485383777 746 dbSNP
rs1210983679 748 dbSNP
rs1239109069 753 dbSNP
rs567105901 772 dbSNP
rs969862564 774 dbSNP
rs1176581965 782 dbSNP
rs782128206 785 dbSNP
rs187623874 786 dbSNP
rs1374540839 787 dbSNP
rs1414524831 791 dbSNP
rs955901732 797 dbSNP
rs1031599256 814 dbSNP
rs1440590278 814 dbSNP
rs1309189341 818 dbSNP
rs553882329 819 dbSNP
rs554642804 828 dbSNP
rs1242857071 829 dbSNP
rs868945638 831 dbSNP
rs574997033 832 dbSNP
rs1344637904 835 dbSNP
rs561435074 836 dbSNP
rs759678179 844 dbSNP
rs1436174275 845 dbSNP
rs1203659217 847 dbSNP
rs544933172 848 dbSNP
rs997323990 849 dbSNP
rs1458921723 852 dbSNP
rs898621399 862 dbSNP
rs145801593 864 dbSNP
rs559292679 865 dbSNP
rs1004179269 874 dbSNP
rs545824622 881 dbSNP
rs576748834 882 dbSNP
rs1408868599 891 dbSNP
rs1331257930 900 dbSNP
rs1401737650 901 dbSNP
rs1449436132 901 dbSNP
rs1324343948 908 dbSNP
rs1330918784 910 dbSNP
rs1437395024 912 dbSNP
rs1276839812 917 dbSNP
rs1337449589 918 dbSNP
rs1218163409 922 dbSNP
rs1258613999 930 dbSNP
rs1319969847 932 dbSNP
rs1211776985 937 dbSNP
rs939630040 938 dbSNP
rs1451984883 941 dbSNP
rs1200467400 944 dbSNP
rs781894364 948 dbSNP
rs905347192 949 dbSNP
rs1474788288 950 dbSNP
rs149807399 951 dbSNP
rs1424925760 959 dbSNP
rs1467606154 960 dbSNP
rs1163429348 977 dbSNP
rs183280694 982 dbSNP
rs1387710312 983 dbSNP
rs1325762980 985 dbSNP
rs567921988 986 dbSNP
rs1399451370 988 dbSNP
rs1278881484 989 dbSNP
rs35964370 992 dbSNP
rs1342482112 995 dbSNP
rs774574531 1006 dbSNP
rs1264799562 1019 dbSNP
rs1356782204 1027 dbSNP
rs115055578 1030 dbSNP
rs1281671943 1035 dbSNP
rs537646202 1039 dbSNP
rs1193970873 1040 dbSNP
rs934327357 1044 dbSNP
rs1473946853 1048 dbSNP
rs924496853 1053 dbSNP
rs1185959918 1055 dbSNP
rs1368459003 1057 dbSNP
rs1458719999 1058 dbSNP
rs986695894 1059 dbSNP
rs1383302663 1061 dbSNP
rs1419279219 1062 dbSNP
rs1299051165 1063 dbSNP
rs1362469601 1066 dbSNP
rs1413083165 1071 dbSNP
rs955301263 1074 dbSNP
rs190323839 1076 dbSNP
rs1028564661 1082 dbSNP
rs771156343 1090 dbSNP
rs1246678548 1099 dbSNP
rs1277514739 1100 dbSNP
rs2595226 1101 dbSNP
rs2595225 1102 dbSNP
rs1216812229 1103 dbSNP
rs1287721656 1105 dbSNP
rs552035192 1109 dbSNP
rs1484400125 1112 dbSNP
rs139741042 1113 dbSNP
rs566722605 1124 dbSNP
rs1017034091 1125 dbSNP
rs1424938982 1127 dbSNP
rs1190255584 1131 dbSNP
rs563471448 1140 dbSNP
rs1378795369 1142 dbSNP
rs1439479624 1143 dbSNP
rs1159470396 1147 dbSNP
rs1362754137 1148 dbSNP
rs1432921579 1153 dbSNP
rs1302376665 1162 dbSNP
rs782104537 1164 dbSNP
rs1397659740 1169 dbSNP
rs1326785976 1170 dbSNP
rs1375787634 1173 dbSNP
rs547088881 1186 dbSNP
rs11466290 1187 dbSNP
rs887092564 1189 dbSNP
rs1231847167 1196 dbSNP
rs1256026388 1207 dbSNP
rs782586831 1212 dbSNP
rs6386 1221 dbSNP
rs398080333 1222 dbSNP
rs71710818 1222 dbSNP
rs782604021 1222 dbSNP
rs1179711962 1225 dbSNP
rs1382374702 1225 dbSNP
rs530271428 1226 dbSNP
rs1431616802 1237 dbSNP
rs1035013003 1244 dbSNP
rs561471681 1255 dbSNP
rs905482472 1262 dbSNP
rs782405273 1280 dbSNP
rs1378215512 1282 dbSNP
rs946912661 1288 dbSNP
rs544869019 1292 dbSNP
rs892847948 1302 dbSNP
rs1447212728 1314 dbSNP
rs1333164267 1315 dbSNP
rs1368552170 1317 dbSNP
rs1054222572 1320 dbSNP
rs1301551816 1327 dbSNP
rs1313440710 1343 dbSNP
rs538118 1352 dbSNP
rs1256692406 1353 dbSNP
rs145323521 1354 dbSNP
rs1199860157 1372 dbSNP
rs1240359799 1382 dbSNP
rs187358838 1390 dbSNP
rs1487716792 1392 dbSNP
rs986497630 1395 dbSNP
rs370780531 1400 dbSNP
rs1268401342 1402 dbSNP
rs776747746 1404 dbSNP
rs576795417 1408 dbSNP
rs868981225 1414 dbSNP
rs1422790916 1419 dbSNP
rs1466038347 1437 dbSNP
rs1172751001 1439 dbSNP
rs1347839162 1442 dbSNP
rs553447422 1451 dbSNP
rs1293743740 1453 dbSNP
rs1369345716 1456 dbSNP
rs1379996507 1458 dbSNP
rs1276974943 1459 dbSNP
rs1340623292 1460 dbSNP
rs1260553525 1468 dbSNP
rs1320288499 1471 dbSNP
rs921201099 1476 dbSNP
rs1266233904 1481 dbSNP
rs1489609913 1482 dbSNP
rs540324418 1501 dbSNP
rs975624660 1505 dbSNP
rs1195752514 1513 dbSNP
rs1262502162 1513 dbSNP
rs1411615576 1514 dbSNP
rs1423009192 1525 dbSNP
rs1165269662 1526 dbSNP
rs1351437930 1530 dbSNP
rs1417430222 1531 dbSNP
rs962594307 1549 dbSNP
rs574238993 1550 dbSNP
rs1272417387 1554 dbSNP
rs1377682665 1555 dbSNP
rs1228073349 1556 dbSNP
rs982817648 1569 dbSNP
rs554233344 1571 dbSNP
rs1034981953 1572 dbSNP
rs1214645580 1577 dbSNP
rs1285667059 1578 dbSNP
rs782557486 1582 dbSNP
rs1218956546 1587 dbSNP
rs1235635248 1609 dbSNP
rs1482864252 1611 dbSNP
rs1182401646 1623 dbSNP
rs1415624753 1625 dbSNP
rs1437594720 1625 dbSNP
rs11466291 1633 dbSNP
rs1420962267 1637 dbSNP
rs782203508 1637 dbSNP
rs1331671430 1640 dbSNP
rs1011467021 1652 dbSNP
rs1447876834 1653 dbSNP
rs34677894 1659 dbSNP
rs1238505781 1663 dbSNP
rs148275600 1663 dbSNP
rs34454867 1663 dbSNP
rs1308778365 1666 dbSNP
rs893954206 1666 dbSNP
rs1225716166 1668 dbSNP
rs1276532964 1672 dbSNP
rs11459409 1673 dbSNP
rs397958633 1673 dbSNP
rs1456266878 1675 dbSNP
rs1177830735 1684 dbSNP
rs1238370660 1696 dbSNP
rs1052632181 1697 dbSNP
rs998595446 1708 dbSNP
rs902972494 1712 dbSNP
rs1414610315 1728 dbSNP
rs1177408817 1731 dbSNP
rs1409006076 1732 dbSNP
rs117102458 1749 dbSNP
rs779717696 1751 dbSNP
rs1331055729 1761 dbSNP
rs1378143801 1764 dbSNP
rs933686921 1767 dbSNP
rs921158104 1770 dbSNP
rs11466293 1772 dbSNP
rs941305244 1773 dbSNP
rs536683132 1777 dbSNP
rs982618650 1778 dbSNP
rs1316027479 1783 dbSNP
rs183606837 1789 dbSNP
rs147229156 1797 dbSNP
rs1458935733 1800 dbSNP
rs1196222588 1815 dbSNP
rs1245830517 1818 dbSNP
rs1478057536 1823 dbSNP
rs1192469360 1824 dbSNP
rs1420878960 1827 dbSNP
rs1464480863 1834 dbSNP
rs782621621 1837 dbSNP
rs1170616322 1839 dbSNP
rs969433133 1844 dbSNP
rs1401398812 1848 dbSNP
rs1412059252 1849 dbSNP
rs1024077740 1852 dbSNP
rs1011143972 1855 dbSNP
rs1437238814 1858 dbSNP
rs1285226940 1861 dbSNP
rs1338547747 1864 dbSNP
rs534312953 1865 dbSNP
rs1258636268 1870 dbSNP
rs1341196897 1886 dbSNP
rs546632579 1887 dbSNP
rs1207895356 1888 dbSNP
rs530116645 1892 dbSNP
rs3732253 1893 dbSNP
rs781865621 1894 dbSNP
rs1031170725 1900 dbSNP
rs551080543 1907 dbSNP
rs376409418 1911 dbSNP
rs999704370 1916 dbSNP
rs902908695 1917 dbSNP
rs1050851109 1919 dbSNP
rs745532717 1927 dbSNP
rs1425042119 1932 dbSNP
rs1476579417 1937 dbSNP
rs1161865081 1939 dbSNP
rs1390500354 1948 dbSNP
rs531159189 1954 dbSNP
rs778499581 1955 dbSNP
rs1039812262 1957 dbSNP
rs1399545715 1958 dbSNP
rs1278742150 1961 dbSNP
rs941284671 1964 dbSNP
rs782674000 1968 dbSNP
rs565451600 1976 dbSNP
rs1046846586 1979 dbSNP
rs11466294 1980 dbSNP
rs928027321 1998 dbSNP
rs782561309 1999 dbSNP
rs1216761503 2003 dbSNP
rs1263001064 2004 dbSNP
rs1449193666 2009 dbSNP
rs1186077627 2012 dbSNP
rs948163127 2017 dbSNP
rs1368199094 2033 dbSNP
rs1473331980 2047 dbSNP
rs916576657 2050 dbSNP
rs1378755067 2070 dbSNP
rs11466295 2077 dbSNP
rs958235326 2085 dbSNP
rs1031273537 2090 dbSNP
rs782712038 2097 dbSNP
rs559991270 2112 dbSNP
rs1394162951 2116 dbSNP
rs114746184 2117 dbSNP
rs1340843364 2123 dbSNP
rs1306599693 2126 dbSNP
rs574075927 2127 dbSNP
rs1352576796 2135 dbSNP
rs148465065 2137 dbSNP
rs1261916285 2138 dbSNP
rs997939100 2141 dbSNP
rs77355911 2145 dbSNP
rs1462034637 2147 dbSNP
rs1185855874 2149 dbSNP
rs1017900493 2159 dbSNP
rs1005637765 2162 dbSNP
rs1439265111 2164 dbSNP
rs888335286 2165 dbSNP
rs111281150 2170 dbSNP
rs1046983782 2184 dbSNP
rs1365546422 2185 dbSNP
rs191360555 2186 dbSNP
rs144531293 2204 dbSNP
rs1402888818 2205 dbSNP
rs1454345575 2209 dbSNP
rs1375900991 2213 dbSNP
rs1446989959 2214 dbSNP
rs11466296 2215 dbSNP
rs1328841314 2216 dbSNP
rs1231962984 2232 dbSNP
rs1255892742 2234 dbSNP
rs1324849725 2235 dbSNP
rs1206147146 2246 dbSNP
rs1256496938 2252 dbSNP
rs948157385 2257 dbSNP
rs1177997643 2265 dbSNP
rs1253000224 2266 dbSNP
rs1431491410 2270 dbSNP
rs916652840 2271 dbSNP
rs1198294713 2275 dbSNP
rs1430108271 2280 dbSNP
rs11466297 2284 dbSNP
rs782311177 2311 dbSNP
rs573104431 2312 dbSNP
rs1399189923 2323 dbSNP
rs936676707 2326 dbSNP
rs1462364963 2334 dbSNP
rs782065119 2336 dbSNP
rs1299511053 2341 dbSNP
rs1365108898 2345 dbSNP
rs923963616 2345 dbSNP
rs978327994 2349 dbSNP
rs1301301210 2354 dbSNP
rs954977276 2362 dbSNP
rs1225820941 2365 dbSNP
rs1030497154 2368 dbSNP
rs1276942048 2374 dbSNP
rs1317673674 2380 dbSNP
rs975320545 2387 dbSNP
rs473698 2410 dbSNP
rs1487603421 2435 dbSNP
rs1018453361 2436 dbSNP
rs1005150703 2442 dbSNP
rs1209489072 2450 dbSNP
rs1269621721 2453 dbSNP
rs1481461862 2463 dbSNP
rs1191412870 2464 dbSNP
rs1422899709 2469 dbSNP
rs888094578 2470 dbSNP
rs1428871519 2482 dbSNP
rs1025293016 2488 dbSNP
rs370655198 2490 dbSNP
rs1347926565 2514 dbSNP
rs1457046690 2522 dbSNP
rs575060597 2537 dbSNP
rs57780425 2537 dbSNP
rs1366893065 2544 dbSNP
rs1397663952 2546 dbSNP
rs782351348 2548 dbSNP
rs1340495497 2551 dbSNP
rs1215698481 2552 dbSNP
rs1298117638 2556 dbSNP
rs906497248 2558 dbSNP
rs1244246457 2559 dbSNP
rs536680146 2569 dbSNP
rs1046189557 2573 dbSNP
rs1490857189 2583 dbSNP
rs11466298 2593 dbSNP
rs1262348856 2598 dbSNP
rs1486126920 2601 dbSNP
rs551117755 2604 dbSNP
rs1188222546 2610 dbSNP
rs1411277926 2611 dbSNP
rs1423098538 2612 dbSNP
rs1163817343 2619 dbSNP
rs895210460 2628 dbSNP
rs1417288455 2634 dbSNP
rs1054263421 2636 dbSNP
rs1157490384 2637 dbSNP
rs35864677 2654 dbSNP
rs936770061 2659 dbSNP
rs1432033134 2662 dbSNP
rs1291144402 2663 dbSNP
rs1377425798 2666 dbSNP
rs1452440437 2670 dbSNP
rs923932546 2680 dbSNP
rs11466299 2682 dbSNP
rs933520763 2683 dbSNP
rs923527729 2686 dbSNP
rs1285327929 2691 dbSNP
rs974908592 2696 dbSNP
rs781992961 2697 dbSNP
rs1235725090 2705 dbSNP
rs1482795018 2708 dbSNP
rs11466300 2709 dbSNP
rs983822114 2717 dbSNP
rs1437380235 2721 dbSNP
rs782303907 2737 dbSNP
rs1407984623 2739 dbSNP
rs1402003492 2740 dbSNP
rs1161897249 2747 dbSNP
rs1357978308 2748 dbSNP
rs551732516 2751 dbSNP
rs1337755383 2754 dbSNP
rs1385456093 2757 dbSNP
rs1444753216 2760 dbSNP
rs1374132277 2775 dbSNP
rs782461497 2775 dbSNP
rs1225588391 2780 dbSNP
rs993795899 2789 dbSNP
rs1276385344 2790 dbSNP
rs528676735 2793 dbSNP
rs1204252485 2794 dbSNP
rs1264706472 2794 dbSNP
rs970635888 2796 dbSNP
rs782214170 2802 dbSNP
rs1470865785 2804 dbSNP
rs1188991602 2813 dbSNP
rs1423893047 2815 dbSNP
rs554764108 2822 dbSNP
rs782627408 2827 dbSNP
rs782499617 2831 dbSNP
rs1408754342 2838 dbSNP
rs1464447015 2839 dbSNP
rs894961315 2842 dbSNP
rs186480855 2855 dbSNP
rs1355380913 2856 dbSNP
rs1444681897 2857 dbSNP
rs1053656659 2862 dbSNP
rs1000949006 2863 dbSNP
rs902603258 2868 dbSNP
rs781872819 2871 dbSNP
rs1042379036 2873 dbSNP
rs933321413 2874 dbSNP
rs138417771 2877 dbSNP
rs1195058867 2882 dbSNP
rs1273228008 2884 dbSNP
rs1439153248 2887 dbSNP
rs529659361 2890 dbSNP
rs1218955251 2894 dbSNP
rs923523260 2898 dbSNP
rs1245557032 2904 dbSNP
rs1039675434 2917 dbSNP
rs1200768099 2918 dbSNP
rs1432146218 2919 dbSNP
rs1477030375 2925 dbSNP
rs868922962 2926 dbSNP
rs11466301 2928 dbSNP
rs1321830286 2935 dbSNP
rs534932428 2940 dbSNP
rs1405684278 2956 dbSNP
rs952422586 2968 dbSNP
rs543909102 2969 dbSNP
rs1226644665 2982 dbSNP
rs1270503859 2983 dbSNP
rs3771525 2989 dbSNP
rs11466302 3004 dbSNP
rs1290656467 3014 dbSNP
rs1490364611 3015 dbSNP
rs1224127937 3023 dbSNP
rs1260454158 3035 dbSNP
rs1024672774 3038 dbSNP
rs544917702 3042 dbSNP
rs1193121609 3045 dbSNP
rs782435510 3046 dbSNP
rs1242986540 3047 dbSNP
rs1476629504 3058 dbSNP
rs1161663364 3065 dbSNP
rs1384898284 3068 dbSNP
rs1425342916 3073 dbSNP
rs1165502308 3076 dbSNP
rs1358727329 3077 dbSNP
rs1012571702 3090 dbSNP
rs180760967 3092 dbSNP
rs959359152 3099 dbSNP
rs1032139322 3108 dbSNP
rs782652351 3109 dbSNP
rs1000708477 3116 dbSNP
rs1247748960 3118 dbSNP
rs1283195109 3120 dbSNP
rs902572646 3123 dbSNP
rs1349340390 3134 dbSNP
rs1205051456 3135 dbSNP
rs1263114278 3150 dbSNP
rs1449074905 3165 dbSNP
rs1182171700 3166 dbSNP
rs1242951466 3166 dbSNP
rs1445412476 3186 dbSNP
rs190842173 3188 dbSNP
rs1378547369 3193 dbSNP
rs11466303 3205 dbSNP
rs997634307 3207 dbSNP
rs901828168 3213 dbSNP
rs782730407 3215 dbSNP
rs943613705 3216 dbSNP
rs1335785921 3220 dbSNP
rs1454190934 3220 dbSNP
rs199595192 3220 dbSNP
rs888029203 3221 dbSNP
rs1306709689 3228 dbSNP
rs574099936 3230 dbSNP
rs1261790843 3235 dbSNP
rs503314 3242 dbSNP
rs782496444 3245 dbSNP
rs1262847253 3256 dbSNP
rs919451588 3258 dbSNP
rs142396078 3260 dbSNP
rs1418549671 3263 dbSNP
rs552427535 3277 dbSNP
rs782785455 3278 dbSNP
rs1479384148 3284 dbSNP
rs1175628979 3287 dbSNP
rs1406541637 3292 dbSNP
rs551837831 3301 dbSNP
rs1470865361 3302 dbSNP
rs917573798 3304 dbSNP
rs1395373213 3307 dbSNP
rs1391642806 3315 dbSNP
rs397975610 3315 dbSNP
rs59586692 3315 dbSNP
rs1328860383 3319 dbSNP
rs782136286 3320 dbSNP
rs1222145629 3333 dbSNP
rs1283273103 3348 dbSNP
rs1324690466 3349 dbSNP
rs372736391 3353 dbSNP
rs1206015457 3370 dbSNP
rs1250010604 3376 dbSNP
rs959517065 3377 dbSNP
rs1480403536 3381 dbSNP
rs1196620018 3382 dbSNP
rs1252682046 3385 dbSNP
rs1489900565 3390 dbSNP
rs1198578566 3401 dbSNP
rs534931269 3402 dbSNP
rs1481276029 3403 dbSNP
rs1168007205 3404 dbSNP
rs3771527 3409 dbSNP
rs1462127516 3412 dbSNP
rs1299530515 3415 dbSNP
rs1363164173 3422 dbSNP
rs1403853335 3422 dbSNP
rs1303043409 3433 dbSNP
rs1346652497 3449 dbSNP
rs1225914686 3460 dbSNP
rs1293809702 3466 dbSNP
rs1307291501 3483 dbSNP
rs137882425 3486 dbSNP
rs782321469 3487 dbSNP
rs529501453 3492 dbSNP
rs1020827022 3504 dbSNP
rs1357338720 3506 dbSNP
rs782718566 3507 dbSNP
rs1221889490 3510 dbSNP
rs1269730501 3513 dbSNP
rs1490805452 3530 dbSNP
rs560555798 3549 dbSNP
rs1184719573 3555 dbSNP
rs1260695334 3558 dbSNP
rs998000668 3561 dbSNP
rs1172060586 3567 dbSNP
rs901965268 3568 dbSNP
rs1383044791 3570 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000445399.1 | 3UTR | UCAAGUUUACAUCCCUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
154 hsa-miR-203b-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT063500 SKI SKI proto-oncogene 2 4
MIRT149737 LDLR low density lipoprotein receptor 2 6
MIRT206557 SOCS5 suppressor of cytokine signaling 5 2 8
MIRT248820 SESN2 sestrin 2 2 2
MIRT261314 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 2
MIRT443290 TAF8 TATA-box binding protein associated factor 8 2 4
MIRT443893 NUDT3 nudix hydrolase 3 2 4
MIRT444057 SERPINA4 serpin family A member 4 2 2
MIRT444345 KIAA1211 KIAA1211 2 2
MIRT444538 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 2 2
MIRT444594 TGFA transforming growth factor alpha 2 2
MIRT445601 SEC14L3 SEC14 like lipid binding 3 2 2
MIRT446025 PNKD paroxysmal nonkinesigenic dyskinesia 2 2
MIRT446309 TBC1D8B TBC1 domain family member 8B 2 2
MIRT446492 TMEM215 transmembrane protein 215 2 4
MIRT446728 SLC36A4 solute carrier family 36 member 4 2 2
MIRT447468 CISD2 CDGSH iron sulfur domain 2 2 2
MIRT447504 MRPS5 mitochondrial ribosomal protein S5 2 2
MIRT447597 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT447636 AGPS alkylglycerone phosphate synthase 2 2
MIRT447846 ZRANB2 zinc finger RANBP2-type containing 2 2 2
MIRT448098 TCN2 transcobalamin 2 2 2
MIRT448111 SEMA4G semaphorin 4G 2 2
MIRT448903 CLCN6 chloride voltage-gated channel 6 2 4
MIRT449396 TOX4 TOX high mobility group box family member 4 2 2
MIRT449484 CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 2 2
MIRT450705 RNF152 ring finger protein 152 2 2
MIRT450781 PAPOLG poly(A) polymerase gamma 2 2
MIRT452856 LAX1 lymphocyte transmembrane adaptor 1 2 2
MIRT453048 TANGO2 transport and golgi organization 2 homolog 2 2
MIRT459389 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT461156 SLC11A2 solute carrier family 11 member 2 2 4
MIRT461613 PTCD3 pentatricopeptide repeat domain 3 2 2
MIRT463711 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 8
MIRT464107 VPS35 VPS35, retromer complex component 2 2
MIRT466438 TFAM transcription factor A, mitochondrial 2 2
MIRT467735 SLC36A1 solute carrier family 36 member 1 2 2
MIRT469512 RBFOX2 RNA binding protein, fox-1 homolog 2 2 6
MIRT470026 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT473411 MDM4 MDM4, p53 regulator 2 2
MIRT480545 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT488444 ACBD3 acyl-CoA binding domain containing 3 2 2
MIRT489498 CRLF3 cytokine receptor like factor 3 2 4
MIRT496149 RPS15A ribosomal protein S15a 2 2
MIRT497013 PRDM2 PR/SET domain 2 2 2
MIRT497087 PHF12 PHD finger protein 12 2 2
MIRT508695 MTRNR2L4 MT-RNR2-like 4 2 4
MIRT517468 PEX26 peroxisomal biogenesis factor 26 2 2
MIRT525329 CNGB1 cyclic nucleotide gated channel beta 1 2 2
MIRT527842 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) 2 2
MIRT529111 AQPEP laeverin 1 1
MIRT530163 C11orf44 chromosome 11 open reading frame 44 2 4
MIRT532249 TBPL2 TATA-box binding protein like 2 2 2
MIRT532828 ZNF704 zinc finger protein 704 2 2
MIRT533140 WNT10A Wnt family member 10A 2 2
MIRT536481 KIAA1468 KIAA1468 2 2
MIRT536802 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 2 2
MIRT537301 FRS2 fibroblast growth factor receptor substrate 2 2 2
MIRT542650 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 2
MIRT545691 NUTF2 nuclear transport factor 2 2 2
MIRT546960 PRR14L proline rich 14 like 2 2
MIRT560566 ZNF460 zinc finger protein 460 2 2
MIRT561792 PAWR pro-apoptotic WT1 regulator 2 2
MIRT562372 ERI2 ERI1 exoribonuclease family member 2 2 2
MIRT569292 SURF6 surfeit 6 2 2
MIRT574090 VASN vasorin 2 2
MIRT619787 HLCS holocarboxylase synthetase 2 2
MIRT620104 HARBI1 harbinger transposase derived 1 2 2
MIRT626003 ZNF517 zinc finger protein 517 2 2
MIRT626375 BBS1 Bardet-Biedl syndrome 1 2 2
MIRT626615 SLC30A6 solute carrier family 30 member 6 2 2
MIRT628381 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT629299 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 1 1
MIRT630439 IDE insulin degrading enzyme 2 2
MIRT631848 PIGG phosphatidylinositol glycan anchor biosynthesis class G 2 2
MIRT633171 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT633472 ZNF724P zinc finger protein 724 2 2
MIRT634389 PLSCR1 phospholipid scramblase 1 2 2
MIRT635536 TRIM72 tripartite motif containing 72 2 2
MIRT635818 OPA3 OPA3, outer mitochondrial membrane lipid metabolism regulator 2 2
MIRT636165 TIMM8A translocase of inner mitochondrial membrane 8A 2 2
MIRT636792 CYB5D1 cytochrome b5 domain containing 1 2 2
MIRT637946 IVD isovaleryl-CoA dehydrogenase 2 2
MIRT640317 STAT1 signal transducer and activator of transcription 1 2 2
MIRT645131 HES2 hes family bHLH transcription factor 2 2 2
MIRT645658 ADK adenosine kinase 2 2
MIRT646143 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 2 2
MIRT646999 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 2 2
MIRT648183 C2orf68 chromosome 2 open reading frame 68 2 2
MIRT650085 TERF2 telomeric repeat binding factor 2 2 2
MIRT650326 RTN2 reticulon 2 2 2
MIRT651562 WHSC1L1 nuclear receptor binding SET domain protein 3 2 2
MIRT659367 CREG2 cellular repressor of E1A stimulated genes 2 2 2
MIRT659830 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT662103 LACTB lactamase beta 2 4
MIRT664837 HUS1 HUS1 checkpoint clamp component 2 2
MIRT669750 ZNF101 zinc finger protein 101 2 4
MIRT669791 GAN gigaxonin 2 2
MIRT670044 RPP14 ribonuclease P/MRP subunit p14 2 2
MIRT670293 RBBP4 RB binding protein 4, chromatin remodeling factor 2 2
MIRT670382 EMP2 epithelial membrane protein 2 2 2
MIRT670950 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 2 4
MIRT672854 C22orf29 retrotransposon Gag like 10 2 2
MIRT672885 FXN frataxin 2 2
MIRT673994 KCNN3 potassium calcium-activated channel subfamily N member 3 2 2
MIRT674155 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 2 2
MIRT674495 TIRAP TIR domain containing adaptor protein 2 2
MIRT675461 NUBPL nucleotide binding protein like 2 2
MIRT675669 TMOD2 tropomodulin 2 2 2
MIRT675994 CRKL CRK like proto-oncogene, adaptor protein 2 2
MIRT676069 TIMM50 translocase of inner mitochondrial membrane 50 2 2
MIRT676378 SEC24D SEC24 homolog D, COPII coat complex component 2 2
MIRT676759 SNX2 sorting nexin 2 2 2
MIRT676893 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT676973 ZNF708 zinc finger protein 708 2 2
MIRT677229 C15orf40 chromosome 15 open reading frame 40 2 2
MIRT677363 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT677456 PDLIM3 PDZ and LIM domain 3 2 2
MIRT678073 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT678091 ATCAY ATCAY, caytaxin 2 2
MIRT678316 FBLIM1 filamin binding LIM protein 1 2 2
MIRT678411 ANKRD36 ankyrin repeat domain 36 2 2
MIRT678519 ZNF347 zinc finger protein 347 2 2
MIRT678695 TRIP11 thyroid hormone receptor interactor 11 2 2
MIRT678821 PDE6A phosphodiesterase 6A 2 2
MIRT679984 RUNDC1 RUN domain containing 1 2 2
MIRT680608 KIAA0391 KIAA0391 2 2
MIRT680724 PRICKLE1 prickle planar cell polarity protein 1 2 2
MIRT681238 ZNF383 zinc finger protein 383 2 2
MIRT681932 SLC19A3 solute carrier family 19 member 3 2 2
MIRT682003 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) 2 2
MIRT682500 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 2 2
MIRT685460 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT688193 FNIP1 folliculin interacting protein 1 2 2
MIRT689666 RBM23 RNA binding motif protein 23 2 2
MIRT691058 CRCP CGRP receptor component 2 2
MIRT691442 CXorf36 chromosome X open reading frame 36 2 2
MIRT695998 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT696395 CORO7 coronin 7 2 2
MIRT702334 KLHL7 kelch like family member 7 2 2
MIRT702555 KBTBD6 kelch repeat and BTB domain containing 6 2 2
MIRT703362 GAPVD1 GTPase activating protein and VPS9 domains 1 2 2
MIRT703551 FKBP14 FK506 binding protein 14 2 2
MIRT705029 CACUL1 CDK2 associated cullin domain 1 2 2
MIRT706335 STAC2 SH3 and cysteine rich domain 2 2 2
MIRT708907 TM4SF19 transmembrane 4 L six family member 19 2 2
MIRT711625 CORO1C coronin 1C 2 2
MIRT714444 TOPAZ1 testis and ovary specific PAZ domain containing 1 2 2
MIRT716324 POU5F1 POU class 5 homeobox 1 2 2
MIRT718568 SLC25A22 solute carrier family 25 member 22 2 2
MIRT720299 DDHD1 DDHD domain containing 1 2 2
MIRT721449 AGPAT6 glycerol-3-phosphate acyltransferase 4 2 2
MIRT723529 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT724492 BFAR bifunctional apoptosis regulator 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-203b Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 down-regulated
miR-203b 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) NULL 15625 Microarray embryos 22921993 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-203b-3p Gemcitabine 60750 NSC613327 approved resistant High Pancreatic Cancer cell line (AsPC-1)
hsa-miR-203b-3p Fluorouracil 3385 NSC19893 approved sensitive High Colorectal Cancer cell line (HCT-116)
hsa-miR-203b-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-203b-3p Tamoxifen+Fulvestrant sensitive cell line (LCC9)
hsa-miR-203b-3p Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-203b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CP20)
hsa-miR-203b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (CIS)
hsa-miR-203b-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-203b-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-203b-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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