miRTarBase - #MIRT444611


—
pre-miRNA Information
pre-miRNA hsa-mir-7161   
Genomic Coordinates chr6: 158609707 - 158609790
Description Homo sapiens miR-7161 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-7161-5p
Sequence 1| UAAAGACUGUAGAGGCAACUGGU |23
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1198027002 1 dbSNP
rs530077902 10 dbSNP
rs1446817450 13 dbSNP
rs774892048 14 dbSNP
rs1438482648 16 dbSNP
rs1167166990 19 dbSNP
rs760372681 19 dbSNP
Putative Targets

Gene Information
Gene Symbol GOLGA6L10   
Synonyms GOLGA6L18
Description golgin A6 family-like 10
Transcript NM_001164465   
Expression
Putative miRNA Targets on GOLGA6L10
3'UTR of GOLGA6L10
(miRNA target sites are highlighted)		 
>GOLGA6L10|NM_001164465|3'UTR
   1 GAGCGGGTCAAGAAATTGAAAAAAAAAAAAACAAAACATTTAAGGGGTTAATATCCTACACAATTCATTTACTTCATTTG
  81 AATGTTAGAGCCACTTATGTTTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAATTTAAAT
 161 TTATTTGTGTTTCTAATTTATAGTTTAAATTTATTTGTGTTTCTAATTTATAATTTAAATTTATTTGTAAAAAGTTAAAT
 241 GAGAGTGGGTCTTTCTCTCATGTTCACTCTGGCATCTTTTAGCATTTTTTTAATTTGATAATTATAGGACGTTAGCATGC
 321 ATATCGAGTTTGCCCTTATGTGGTGGGAGTTCAAACACACAAAGACCCACTGTATGCACACAACTGTTCTTGCTGGTTTG
 401 GGATAGGCTGCCATGCTTTTTTAATGTTAGTACAGCCTGTATATTCATTACGGAATTCAGATAAAATTTCCTTATGTTCT
 481 GCTGTTATGTTTGATCGAATCCTAATCACAGTGAGCTCTTCATTAGCTCAATATGTGGTTTGCCCTCAAGTGCGCGGTCT
 561 ATTACTTTGTAATATGCCACTGTGAGTACTGACATTTACAGTTGTTTAAAGGTGGAGCACTGGAAACAGCCTTTCCCCCT
 641 TTTTCTGTGTATTGGGGATGGGAGTAATAACATTTTGGGGAGGTTTTTAAATCTCCCAGAAGAGGAAAGTGGCCTGCTTT
 721 GGCAGGTGTGTGCAGGATAGAATATGTTTCATTTGTTCCGGTGCCAAGAATGAGCGCTGTACTACGGTAGTTCCCTTAGG
 801 ATTTGTATGTGCTCTGGGCTCATGAAGATACTGCCTCATGAGCTGTGGCAGTTGTACTCTTTTTTGATGACCTGAAAAGG
 881 GATTATTTCTGAGGAATGAAAGGCTCCCATCATGACTGTGGATGTGGAAAACCTTTTCTAGCTGAGAGCATTTATATCTA
 961 CAATACATTTTAAAGTCAGAGTTCATGTTCCCTGTTTTAATCACATGACTACATGTCCCAGTACACAAAAGGGCACTGGT
1041 TGGCGTTCTCCTTAATGTATTTAGTAAAGATCAGAAGAAATCCTTTAAGAGTTTAAATGCCCCTGGAACAGGCATATACA
1121 GGCTCTAGTCAAGAATGAATTCGAGTGAAGGAAAGCTGTGTGACACCTGGCATTCCTCTGTGTTCATGGAGCTTATCTGA
1201 GGCTAGAAGATGGATTTTACCATCTAGACCTCTCTGGCTAATAGCTAGTCTTCAACCATCTGACATAGGAATTTACTTCT
1281 TTTCCTTGAATGGAGAACACTTTAAAAATAATAACAAACATTATTATAAACTAATATATGTGAGAGTACTTAGTTGAAAC
1361 AAAAAGGAGTTTTAGTAGACAGTATTATACTACATTTGAAAATCAAGGAGCAGTTTATGCAACGTAAAATGTTTACAAAC
1441 TGCAGCGCAATCTACTGTTTGTGACTGTCAAAGTGTCATGAGGAAAGTGTCTATACAATCACAGAGTTATATTTCCTCAC
1521 AAAGTTCTTTACGAAGAGTGAAATATGTTTTTATACCTCTCAGTTTCAGTTAGAGGCATATTTTGTGTAATATTTATGGC
1601 TTAAAATGGACTAAAGGTCCTGTTCTTGCCTTGTCTGAACTTGCCGCTTTTGCATTCTTTGAGTTCAGTTTAAAGACACT
1681 TACTTTAACTCCATTTTAAACCCTCGGGCTAGAAATCGTACCACTGTTAATTAGCCACGTTATTTGGTCTAACAGTTTTT
1761 GTTTATCATTCTGAAACTGAGCTTATCTAATACATTGATAAATTATTTCAAAGGTATTTTTATAGTTCAAATCGCTTCAC
1841 TTTTACCCTGACACGTATAAATGACTAGGAATGACCTTCAGATAGCGTTTAGCAACTGTAACCAATCTGACAATAATGTG
1921 TTCATCAGGTACCTGTGGATTAAATCACATACTGGCATATTTAAGCTGAATGTCAGTCTGAAAAATAAATGTACTATATT
2001 AACTCAAATACCACTCTCTGTGTAGGTATTTTGTCATATGTTTAAGAAAAAGCTAAAGAGAATGGAAATCCTATGACAAT
2081 AACTCAAGTCTTTCTTCAAAGTGCATGCAGTCTCTTGCAGTACCTCATTCAGCCAAGTATTTGTTCTCTTCCTCATTCAG
2161 TATAAGGCAGCTTTCAATTTGCTTAGAAGGCAATATTAGAAGGTTAGAGTTCAGCAGAAAGAGAGAATTTTAAAATGTGA
2241 GTTTGACTGAATAAATTTGAATTTCTGTAGGAAGTAAAGAATCAAAATACCTATTTAAAGACTGCAATATATGATAATTA
2321 TTTTTAAAGTAATAGATTAAACCTGATAGGTTTTCCTGAAATGAAAAACAATCAGTTCTAAAACCAAAGCTGATTTTTAG
2401 AAAATGTGAAAATGTAAATCAACCCTATCCAAAATAGATTCTCTAAAACTTTATCTTACAGTCACTTTCAAATAACTATT
2481 CAAAAATGTAACTGTTAAATTAATGTCTTAAAATAATTTAAAACATTTTAAAATACGAATACTGTAGCTTAAAACAAAGA
2561 ATCTAGGGGAAGGAAAAGTAGAGAAAGAAATGCCAATTCCAGTCCAAAGCTGTATTTGCCAAGTTTTCTTAGAACGACTT
2641 TTACCGATTTATGAATTCTTATACACAGAATGCATGATGGAAATACTGATTTTTGTCTAAAGTGGCATTATTGACTGCTT
2721 CTGTGATGCTACTGTAATGTAATAAATTATTAGATTGTTTCAAGGTGCTGTTTTGCCTAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugGUCAACGGAGA-UGUCAGAAAu 5'
            :| |||  ||| |||||:||| 
Target 5' gtTATTTG-GTCTAACAGTTTTTg 3'
 1739 - 1761 148.00 -13.50
2 
miRNA  3' uggucaacggaGAUGUCAGAAAu 5'
                     ||  ||||||| 
Target 5' tatgacaataaCTCAAGTCTTTc 3'
 2072 - 2094 144.00 -8.60
3 
miRNA  3' uggUCAACGG---AGAUGUCAGAAAu 5'
             | |||||   |:|:|| ||||| 
Target 5' tgaACTTGCCGCTTTTGCATTCTTTg 3'
 1636 - 1661 140.00 -14.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26265765 137 COSMIC
COSN8590507 153 COSMIC
COSN26267162 197 COSMIC
COSN8590480 2635 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs757502084 1 dbSNP
rs1326180823 4 dbSNP
rs751777590 5 dbSNP
rs1223773181 6 dbSNP
rs764346517 8 dbSNP
rs1292832421 9 dbSNP
rs758472698 12 dbSNP
rs201663151 13 dbSNP
rs1162985067 15 dbSNP
rs765850052 16 dbSNP
rs760051613 17 dbSNP
rs754281594 18 dbSNP
rs1332553389 19 dbSNP
rs1474916592 19 dbSNP
rs766797024 19 dbSNP
rs571216658 20 dbSNP
rs747483017 21 dbSNP
rs761102796 21 dbSNP
rs780484030 22 dbSNP
rs772481682 23 dbSNP
rs746259854 24 dbSNP
rs779257126 25 dbSNP
rs772785102 27 dbSNP
rs1447606693 28 dbSNP
rs771754489 28 dbSNP
rs761290464 29 dbSNP
rs1284530590 30 dbSNP
rs773854946 30 dbSNP
rs768586984 31 dbSNP
rs1285304266 32 dbSNP
rs1353760567 32 dbSNP
rs1441439676 32 dbSNP
rs200797589 32 dbSNP
rs376707856 33 dbSNP
rs1491273508 34 dbSNP
rs754855489 34 dbSNP
rs1244163328 35 dbSNP
rs1357877695 35 dbSNP
rs777935956 35 dbSNP
rs1177313495 36 dbSNP
rs1284318435 36 dbSNP
rs751496733 37 dbSNP
rs779846978 37 dbSNP
rs372209783 38 dbSNP
rs1249315370 39 dbSNP
rs777912811 47 dbSNP
rs1414054757 59 dbSNP
rs554424850 61 dbSNP
rs1444356347 83 dbSNP
rs1308412748 97 dbSNP
rs1377486352 98 dbSNP
rs1242262837 99 dbSNP
rs1316577046 103 dbSNP
rs1272501264 105 dbSNP
rs1200667637 107 dbSNP
rs1343686108 107 dbSNP
rs1280385310 111 dbSNP
rs1462912928 113 dbSNP
rs1197202444 119 dbSNP
rs1440807503 123 dbSNP
rs1184608312 124 dbSNP
rs1375942290 129 dbSNP
rs1477778076 130 dbSNP
rs1173344089 131 dbSNP
rs1404677840 134 dbSNP
rs1464281894 135 dbSNP
rs1489147610 137 dbSNP
rs189752079 137 dbSNP
rs1400762048 141 dbSNP
rs866785482 150 dbSNP
rs2019922 153 dbSNP
rs1233394772 157 dbSNP
rs1276231914 164 dbSNP
rs1315633092 164 dbSNP
rs1217672298 165 dbSNP
rs928284650 167 dbSNP
rs555363824 171 dbSNP
rs1458504992 176 dbSNP
rs1198063527 178 dbSNP
rs563671974 180 dbSNP
rs1265929103 181 dbSNP
rs1368251268 183 dbSNP
rs1451086544 187 dbSNP
rs1199608327 197 dbSNP
rs370896238 197 dbSNP
rs1476924217 199 dbSNP
rs374436056 201 dbSNP
rs1401115198 205 dbSNP
rs62012747 213 dbSNP
rs1291686247 216 dbSNP
rs1389990308 219 dbSNP
rs1295838587 229 dbSNP
rs1452385807 233 dbSNP
rs1387306305 239 dbSNP
rs1324909558 241 dbSNP
rs1337783180 244 dbSNP
rs1435016085 247 dbSNP
rs1398944848 248 dbSNP
rs1376719998 251 dbSNP
rs1318999225 252 dbSNP
rs1230135050 254 dbSNP
rs1264073651 257 dbSNP
rs1356214321 260 dbSNP
rs1210960069 267 dbSNP
rs1271066157 277 dbSNP
rs62012746 277 dbSNP
rs1193208307 279 dbSNP
rs1421896621 288 dbSNP
rs867221359 291 dbSNP
rs1367714829 293 dbSNP
rs1458287890 300 dbSNP
rs376995387 307 dbSNP
rs1358062417 310 dbSNP
rs1418635763 311 dbSNP
rs1015744833 316 dbSNP
rs1489217603 320 dbSNP
rs1310941942 321 dbSNP
rs1340259114 326 dbSNP
rs1246142080 333 dbSNP
rs1294669006 335 dbSNP
rs1351564169 336 dbSNP
rs1216050979 339 dbSNP
rs1286863149 342 dbSNP
rs1486951345 344 dbSNP
rs1180341672 346 dbSNP
rs1255147809 348 dbSNP
rs1424238952 349 dbSNP
rs1185343544 356 dbSNP
rs1378457109 368 dbSNP
rs979750628 372 dbSNP
rs970144382 376 dbSNP
rs1346459576 378 dbSNP
rs1464177077 381 dbSNP
rs1301951547 382 dbSNP
rs1401938041 383 dbSNP
rs1453883917 388 dbSNP
rs1317755445 392 dbSNP
rs1375268072 393 dbSNP
rs1240108607 395 dbSNP
rs1309990658 404 dbSNP
rs1318828989 406 dbSNP
rs1208266346 411 dbSNP
rs1255699265 414 dbSNP
rs1483437578 416 dbSNP
rs1371173801 422 dbSNP
rs1438936148 430 dbSNP
rs1179193504 431 dbSNP
rs1409510018 432 dbSNP
rs1431014477 435 dbSNP
rs374478933 437 dbSNP
rs1377895912 447 dbSNP
rs1470766380 451 dbSNP
rs1485545230 452 dbSNP
rs1398568639 455 dbSNP
rs1446624061 458 dbSNP
rs1299303297 459 dbSNP
rs1375618118 479 dbSNP
rs1217586261 488 dbSNP
rs1300703266 489 dbSNP
rs1312951674 496 dbSNP
rs1225586479 497 dbSNP
rs1255852512 498 dbSNP
rs1457196035 511 dbSNP
rs1199184232 515 dbSNP
rs1234568084 519 dbSNP
rs1487204430 526 dbSNP
rs1190076516 528 dbSNP
rs1267482365 530 dbSNP
rs3926912 536 dbSNP
rs1471490015 537 dbSNP
rs1421920258 538 dbSNP
rs1465495094 539 dbSNP
rs1171699097 544 dbSNP
rs1356843736 545 dbSNP
rs1434985665 547 dbSNP
rs1292945748 553 dbSNP
rs1346244822 554 dbSNP
rs1406980110 555 dbSNP
rs1250887874 556 dbSNP
rs1317035558 559 dbSNP
rs1214991705 561 dbSNP
rs1274881410 567 dbSNP
rs1319815533 568 dbSNP
rs1220754825 571 dbSNP
rs1246727597 572 dbSNP
rs1490714142 574 dbSNP
rs1191059377 575 dbSNP
rs1262073403 576 dbSNP
rs1187427659 577 dbSNP
rs1422099597 581 dbSNP
rs1404036714 586 dbSNP
rs1164763739 590 dbSNP
rs1366266094 598 dbSNP
rs1426664280 605 dbSNP
rs1296553171 608 dbSNP
rs1340061461 610 dbSNP
rs1431792719 611 dbSNP
rs1271650576 612 dbSNP
rs1376723579 613 dbSNP
rs1227663544 617 dbSNP
rs1292494647 638 dbSNP
rs1360938503 639 dbSNP
rs1213889370 659 dbSNP
rs1284717363 662 dbSNP
rs1488374072 665 dbSNP
rs1217511709 668 dbSNP
rs1244180197 677 dbSNP
rs1472052627 678 dbSNP
rs1181754894 683 dbSNP
rs1386458498 693 dbSNP
rs1446998429 714 dbSNP
rs1156884197 719 dbSNP
rs1359988648 720 dbSNP
rs1401448606 726 dbSNP
rs1320602690 728 dbSNP
rs1357208856 738 dbSNP
rs1447067841 741 dbSNP
rs1315620308 745 dbSNP
rs1384846088 755 dbSNP
rs467591 759 dbSNP
rs1307819890 760 dbSNP
rs1350832971 761 dbSNP
rs1206523521 770 dbSNP
rs1276109450 772 dbSNP
rs1441023466 775 dbSNP
rs1203379994 776 dbSNP
rs1244162958 781 dbSNP
rs1462997468 785 dbSNP
rs1379756488 786 dbSNP
rs1470594321 797 dbSNP
rs1423386537 803 dbSNP
rs1414143590 806 dbSNP
rs1337105573 808 dbSNP
rs1408045200 814 dbSNP
rs1444460076 816 dbSNP
rs1330670024 818 dbSNP
rs1240616384 823 dbSNP
rs1272593362 824 dbSNP
rs1343797156 830 dbSNP
rs1223751455 831 dbSNP
rs1264083686 834 dbSNP
rs1326173605 835 dbSNP
rs1197302702 840 dbSNP
rs1250489807 842 dbSNP
rs1438445732 849 dbSNP
rs1184021822 853 dbSNP
rs1245090394 866 dbSNP
rs1480198403 869 dbSNP
rs1177493422 879 dbSNP
rs1431149554 889 dbSNP
rs1463905405 922 dbSNP
rs1169841227 932 dbSNP
rs1397058837 962 dbSNP
rs1393096986 974 dbSNP
rs1320935759 984 dbSNP
rs1330018417 984 dbSNP
rs1405167392 988 dbSNP
rs1284882279 1001 dbSNP
rs1326069040 1011 dbSNP
rs1217238611 1023 dbSNP
rs1251129027 1044 dbSNP
rs1340628791 1045 dbSNP
rs1198084575 1105 dbSNP
rs1287794336 1135 dbSNP
rs1490225949 1165 dbSNP
rs1200370058 1189 dbSNP
rs1271383675 1193 dbSNP
rs1476974842 1197 dbSNP
rs1192148218 1238 dbSNP
rs1373432207 1258 dbSNP
rs1463407805 1301 dbSNP
rs1161452554 1329 dbSNP
rs1389384691 1332 dbSNP
rs1424790727 1344 dbSNP
rs1304562791 1346 dbSNP
rs1337904252 1379 dbSNP
rs1399050934 1386 dbSNP
rs1293043120 1423 dbSNP
rs1327446434 1424 dbSNP
rs1219582081 1429 dbSNP
rs1342972679 1430 dbSNP
rs1358785604 1440 dbSNP
rs1276785734 1446 dbSNP
rs1294081912 1447 dbSNP
rs1381176731 1460 dbSNP
rs1390810344 1465 dbSNP
rs1262155324 1483 dbSNP
rs1430158600 1493 dbSNP
rs1185292919 1496 dbSNP
rs1384585599 1503 dbSNP
rs1445193468 1506 dbSNP
rs1294993763 1507 dbSNP
rs1456033861 1520 dbSNP
rs1358082233 1524 dbSNP
rs1452535146 1527 dbSNP
rs1393519773 1532 dbSNP
rs1386087396 1533 dbSNP
rs1384320368 1553 dbSNP
rs1311051902 1556 dbSNP
rs1382641449 1562 dbSNP
rs1247351800 1573 dbSNP
rs1317176182 1580 dbSNP
rs1351672019 1581 dbSNP
rs1238599212 1582 dbSNP
rs1261573963 1591 dbSNP
rs1486712208 1596 dbSNP
rs1171151979 1597 dbSNP
rs1242337743 1598 dbSNP
rs1461663763 1607 dbSNP
rs1185363991 1609 dbSNP
rs1418039737 1616 dbSNP
rs1365127830 1617 dbSNP
rs1464258158 1622 dbSNP
rs1335061141 1623 dbSNP
rs1405823822 1625 dbSNP
rs1453973754 1629 dbSNP
rs71219707 1633 dbSNP
rs1374724469 1634 dbSNP
rs1390943914 1644 dbSNP
rs1478656638 1645 dbSNP
rs1421390778 1646 dbSNP
rs1231347963 1654 dbSNP
rs1262218093 1654 dbSNP
rs1324080199 1656 dbSNP
rs1192305861 1657 dbSNP
rs1236331818 1667 dbSNP
rs1480279185 1669 dbSNP
rs1177232086 1673 dbSNP
rs1252055946 1678 dbSNP
rs1431036855 1679 dbSNP
rs1429021459 1680 dbSNP
rs1179182944 1681 dbSNP
rs1428050805 1683 dbSNP
rs1461948918 1686 dbSNP
rs1298756863 1700 dbSNP
rs1375639860 1701 dbSNP
rs1403322817 1705 dbSNP
rs1282924539 1706 dbSNP
rs1345884034 1709 dbSNP
rs1268137349 1717 dbSNP
rs1211911000 1718 dbSNP
rs1306781310 1721 dbSNP
rs1467331089 1738 dbSNP
rs1487256532 1739 dbSNP
rs539452968 1744 dbSNP
rs1269217964 1746 dbSNP
rs1481227005 1753 dbSNP
rs1201992978 1756 dbSNP
rs1417824331 1761 dbSNP
rs1409842344 1762 dbSNP
rs1199672167 1764 dbSNP
rs1422872341 1786 dbSNP
rs1302650630 1787 dbSNP
rs1008419857 1794 dbSNP
rs1406994387 1795 dbSNP
rs1268138159 1823 dbSNP
rs1361083557 1833 dbSNP
rs62010118 1834 dbSNP
rs1297685031 1843 dbSNP
rs1356617259 1848 dbSNP
rs1221028374 1849 dbSNP
rs1291911133 1853 dbSNP
rs1490719191 1854 dbSNP
rs1250185777 1855 dbSNP
rs955405462 1861 dbSNP
rs1475332313 1864 dbSNP
rs1187588475 1865 dbSNP
rs1422208499 1866 dbSNP
rs1028443973 1873 dbSNP
rs1443356155 1876 dbSNP
rs1162933211 1881 dbSNP
rs1385956408 1885 dbSNP
rs1426773848 1886 dbSNP
rs1316581970 1887 dbSNP
rs1344352219 1896 dbSNP
rs1431266876 1908 dbSNP
rs1290437416 1917 dbSNP
rs1227338184 1918 dbSNP
rs1380440134 1920 dbSNP
rs1245157978 1928 dbSNP
rs1315072053 1932 dbSNP
rs1331222438 1935 dbSNP
rs1221714799 1946 dbSNP
rs996853469 1948 dbSNP
rs1302736903 1949 dbSNP
rs11856061 1965 dbSNP
rs1384518112 1966 dbSNP
rs1216898840 1968 dbSNP
rs11856042 1971 dbSNP
rs11856117 1974 dbSNP
rs1183575750 1977 dbSNP
rs1385937758 1978 dbSNP
rs893148382 1979 dbSNP
rs1157022193 1982 dbSNP
rs1032915226 1988 dbSNP
rs451357 1991 dbSNP
rs1369826893 1992 dbSNP
rs1401536471 1993 dbSNP
rs1160933867 1997 dbSNP
rs1403653823 2003 dbSNP
rs1331526618 2011 dbSNP
rs1337390000 2012 dbSNP
rs1384329500 2014 dbSNP
rs1439330507 2018 dbSNP
rs1278473751 2021 dbSNP
rs1350850545 2025 dbSNP
rs1225124927 2031 dbSNP
rs1270399776 2047 dbSNP
rs1321938872 2058 dbSNP
rs1467001986 2075 dbSNP
rs1203552855 2084 dbSNP
rs1244346728 2085 dbSNP
rs1444659318 2092 dbSNP
rs1179704302 2107 dbSNP
rs1470602464 2108 dbSNP
rs1179236019 2114 dbSNP
rs1397828092 2117 dbSNP
rs1426941666 2118 dbSNP
rs1469140289 2125 dbSNP
rs1177045906 2133 dbSNP
rs1408154249 2137 dbSNP
rs1408143395 2143 dbSNP
rs1327528575 2150 dbSNP
rs1335889961 2154 dbSNP
rs1281022252 2155 dbSNP
rs1443918345 2155 dbSNP
rs1344001057 2162 dbSNP
rs1223228137 2163 dbSNP
rs1264178778 2164 dbSNP
rs1347676060 2168 dbSNP
rs1194599923 2171 dbSNP
rs878878107 2172 dbSNP
rs879140679 2175 dbSNP
rs1272361874 2182 dbSNP
rs1438536736 2183 dbSNP
rs1184581002 2185 dbSNP
rs1267101451 2188 dbSNP
rs1480247488 2190 dbSNP
rs1379163895 2191 dbSNP
rs1474376016 2194 dbSNP
rs1167330077 2197 dbSNP
rs1396551260 2198 dbSNP
rs1411200435 2207 dbSNP
rs1300769302 2212 dbSNP
rs1364526118 2216 dbSNP
rs1405185340 2217 dbSNP
rs1284263834 2218 dbSNP
rs1225876250 2221 dbSNP
rs1270173581 2222 dbSNP
rs2568702 2223 dbSNP
rs1207325670 2227 dbSNP
rs1289685289 2241 dbSNP
rs1490230576 2244 dbSNP
rs1269193764 2245 dbSNP
rs1445106906 2257 dbSNP
rs1192354072 2260 dbSNP
rs1373523750 2263 dbSNP
rs1451287687 2264 dbSNP
rs1161058700 2265 dbSNP
rs1384086938 2267 dbSNP
rs1304653504 2268 dbSNP
rs1393292196 2269 dbSNP
rs1380936309 2272 dbSNP
rs1318105694 2275 dbSNP
rs1231269790 2279 dbSNP
rs1327493758 2279 dbSNP
rs1312992398 2280 dbSNP
rs878865321 2283 dbSNP
rs1246947049 2286 dbSNP
rs1267506098 2288 dbSNP
rs1485028736 2290 dbSNP
rs1204285569 2303 dbSNP
rs1262174429 2305 dbSNP
rs1466153804 2307 dbSNP
rs1181742391 2308 dbSNP
rs1241985196 2311 dbSNP
rs1167326863 2316 dbSNP
rs1444762407 2316 dbSNP
rs1166447346 2332 dbSNP
rs1361661785 2334 dbSNP
rs1452650115 2335 dbSNP
rs1466470812 2337 dbSNP
rs1158292457 2345 dbSNP
rs1389908703 2346 dbSNP
rs1437892297 2347 dbSNP
rs879123594 2350 dbSNP
rs1382095776 2354 dbSNP
rs1453402520 2357 dbSNP
rs1314978362 2361 dbSNP
rs1315281494 2364 dbSNP
rs1238621521 2365 dbSNP
rs1261081195 2369 dbSNP
rs1331036124 2370 dbSNP
rs1201656881 2389 dbSNP
rs1262489075 2391 dbSNP
rs1461732033 2392 dbSNP
rs1183060206 2394 dbSNP
rs1247814942 2396 dbSNP
rs1418133579 2399 dbSNP
rs1182158507 2403 dbSNP
rs1413118188 2407 dbSNP
rs1459199136 2413 dbSNP
rs1174753719 2414 dbSNP
rs1405942580 2419 dbSNP
rs1467008078 2424 dbSNP
rs1304602004 2425 dbSNP
rs1371353165 2429 dbSNP
rs1391036818 2430 dbSNP
rs1308029417 2432 dbSNP
rs1379251762 2434 dbSNP
rs1352075822 2438 dbSNP
rs1221413381 2441 dbSNP
rs2915708 2442 dbSNP
rs752929095 2453 dbSNP
rs1324105611 2461 dbSNP
rs1212218814 2467 dbSNP
rs1249105448 2469 dbSNP
rs1480047401 2477 dbSNP
rs1195995291 2479 dbSNP
rs1479269121 2484 dbSNP
rs1197630121 2488 dbSNP
rs1429043241 2492 dbSNP
rs1434245894 2494 dbSNP
rs1178954362 2495 dbSNP
rs2257928 2498 dbSNP
rs1461589489 2500 dbSNP
rs1308741494 2504 dbSNP
rs2257927 2504 dbSNP
rs1403346416 2509 dbSNP
rs1282337987 2515 dbSNP
rs1368116878 2517 dbSNP
rs1220840657 2520 dbSNP
rs1293405247 2521 dbSNP
rs1306867867 2527 dbSNP
rs1227467157 2534 dbSNP
rs1276161208 2536 dbSNP
rs1489686396 2537 dbSNP
rs1221355746 2539 dbSNP
rs1268621862 2542 dbSNP
rs1489035152 2543 dbSNP
rs1193407602 2546 dbSNP
rs1417935784 2547 dbSNP
rs1169233357 2548 dbSNP
rs1392120699 2555 dbSNP
rs1422968014 2556 dbSNP
rs1302816830 2559 dbSNP
rs1350227422 2563 dbSNP
rs1438283167 2564 dbSNP
rs1286930774 2569 dbSNP
rs1361103967 2574 dbSNP
rs1435741759 2580 dbSNP
rs75464984 2583 dbSNP
rs1244750534 2594 dbSNP
rs1290209571 2603 dbSNP
rs1323171541 2605 dbSNP
rs1224189320 2611 dbSNP
rs1240727179 2619 dbSNP
rs1485796380 2620 dbSNP
rs1189847555 2627 dbSNP
rs1249938675 2628 dbSNP
rs1442904568 2634 dbSNP
rs1181708578 2635 dbSNP
rs111698149 2636 dbSNP
rs1407298759 2642 dbSNP
rs1156595213 2643 dbSNP
rs1344449063 2645 dbSNP
rs1322515082 2646 dbSNP
rs1451219703 2651 dbSNP
rs1284313195 2656 dbSNP
rs1380808725 2661 dbSNP
rs1221732513 2662 dbSNP
rs1282586678 2674 dbSNP
rs1328950100 2676 dbSNP
rs1209879896 2677 dbSNP
rs1270520460 2678 dbSNP
rs878911929 2679 dbSNP
rs1473890024 2680 dbSNP
rs1175770418 2681 dbSNP
rs1406938581 2683 dbSNP
rs1161132682 2684 dbSNP
rs1457617852 2684 dbSNP
rs1403767123 2686 dbSNP
rs1469235408 2691 dbSNP
rs1360450936 2695 dbSNP
rs76969617 2699 dbSNP
rs1278637049 2704 dbSNP
rs1350747377 2714 dbSNP
rs1229347164 2715 dbSNP
rs1290601572 2717 dbSNP
rs77727669 2720 dbSNP
rs1200444545 2722 dbSNP
rs1279417370 2729 dbSNP
rs1452589831 2734 dbSNP
rs1198829636 2744 dbSNP
rs1426962505 2745 dbSNP
rs1480063666 2752 dbSNP
rs1173161451 2753 dbSNP
rs1344856184 2757 dbSNP
rs1407661547 2759 dbSNP
rs1327636299 2760 dbSNP
rs1370715636 2762 dbSNP
rs1411291332 2765 dbSNP
rs1310223758 2768 dbSNP
rs1344093467 2769 dbSNP
rs1233123826 2771 dbSNP
rs1276012425 2777 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uggucaacggagaugUCAGAAAu 5'
                         ||||||| 
Target 5' ------------ucaAGUCUUUc 3'
 		1 - 11
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000439287.4 | 3UTR | UCAAGUCUUUCUUCAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
94 hsa-miR-7161-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT131193 INCENP inner centromere protein 2 4
MIRT318016 CENPQ centromere protein Q 2 2
MIRT405275 ZNF678 zinc finger protein 678 2 2
MIRT442570 CCDC59 coiled-coil domain containing 59 2 2
MIRT442611 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT444013 GOLGA8H golgin A8 family member H 2 2
MIRT444024 GOLGA8M golgin A8 family member M 2 2
MIRT444339 GOLGA6L4 golgin A6 family-like 4 2 2
MIRT444611 GOLGA6L10 golgin A6 family-like 10 2 2
MIRT446342 MAN1A2 mannosidase alpha class 1A member 2 2 2
MIRT446558 GOLGA8J golgin A8 family member J 2 2
MIRT447671 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 2 2
MIRT447975 MSH6 mutS homolog 6 2 2
MIRT448895 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 2 2
MIRT448936 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT449414 TRIM5 tripartite motif containing 5 2 2
MIRT450291 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 2 2
MIRT454877 PCNA proliferating cell nuclear antigen 2 4
MIRT456615 SFMBT2 Scm like with four mbt domains 2 2 2
MIRT462108 TMEM214 transmembrane protein 214 2 2
MIRT471923 NRAS NRAS proto-oncogene, GTPase 2 4
MIRT474437 KLHL21 kelch like family member 21 2 2
MIRT476600 G3BP1 G3BP stress granule assembly factor 1 2 2
MIRT480573 BZW1 basic leucine zipper and W2 domains 1 2 2
MIRT483890 IL20RB interleukin 20 receptor subunit beta 2 6
MIRT493363 KIF5B kinesin family member 5B 2 2
MIRT494934 TMEM167A transmembrane protein 167A 2 2
MIRT495915 CLDN1 claudin 1 2 2
MIRT501574 PLEKHF2 pleckstrin homology and FYVE domain containing 2 2 4
MIRT502193 IGF1R insulin like growth factor 1 receptor 2 4
MIRT502928 CDC42SE1 CDC42 small effector 1 2 4
MIRT506393 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 2 4
MIRT506570 MNX1 motor neuron and pancreas homeobox 1 2 4
MIRT509478 GNL3L G protein nucleolar 3 like 2 6
MIRT518537 FLCN folliculin 2 6
MIRT519577 ZNFX1 zinc finger NFX1-type containing 1 2 4
MIRT524088 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 4
MIRT524146 LDHD lactate dehydrogenase D 2 4
MIRT524659 C1orf50 chromosome 1 open reading frame 50 2 10
MIRT526324 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus 2 2
MIRT526566 UGT2A2 UDP glucuronosyltransferase family 2 member A2 2 2
MIRT526612 ZNF780A zinc finger protein 780A 2 4
MIRT526889 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 2 2
MIRT527115 ARHGAP15 Rho GTPase activating protein 15 2 2
MIRT528023 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT529589 TMEM220 transmembrane protein 220 2 2
MIRT532797 STYK1 serine/threonine/tyrosine kinase 1 2 2
MIRT537099 GPC6 glypican 6 2 2
MIRT539070 ATP6V1C1 ATPase H+ transporting V1 subunit C1 2 2
MIRT545495 DAPK2 death associated protein kinase 2 2 2
MIRT545814 ZNF608 zinc finger protein 608 2 4
MIRT553533 TMEM185B transmembrane protein 185B 2 4
MIRT557285 HIST2H2BE histone cluster 2 H2B family member e 2 2
MIRT559552 ARGLU1 arginine and glutamate rich 1 2 4
MIRT561069 EIF4A3 eukaryotic translation initiation factor 4A3 2 2
MIRT561710 PTP4A1 protein tyrosine phosphatase type IVA, member 1 2 2
MIRT561995 LRRC58 leucine rich repeat containing 58 2 2
MIRT565896 NHS NHS actin remodeling regulator 2 2
MIRT567333 HMGB1 high mobility group box 1 2 2
MIRT568042 CLDN12 claudin 12 2 2
MIRT568315 BAG4 BCL2 associated athanogene 4 2 2
MIRT570677 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT571047 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT571359 SFT2D2 SFT2 domain containing 2 2 2
MIRT571935 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT572786 ZNF277 zinc finger protein 277 2 2
MIRT573936 CNTNAP2 contactin associated protein like 2 2 2
MIRT576962 Anxa4 annexin A4 2 3
MIRT608297 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT613342 AFF1 AF4/FMR2 family member 1 2 2
MIRT613529 ANAPC7 anaphase promoting complex subunit 7 2 2
MIRT614705 TOR1AIP2 torsin 1A interacting protein 2 2 2
MIRT616658 ORAI1 ORAI calcium release-activated calcium modulator 1 2 2
MIRT624731 ANXA4 annexin A4 2 3
MIRT626525 TSC1 TSC complex subunit 1 2 2
MIRT627647 SCN1A sodium voltage-gated channel alpha subunit 1 2 2
MIRT637423 EPB41L3 erythrocyte membrane protein band 4.1 like 3 2 2
MIRT641059 TCP11L1 t-complex 11 like 1 2 4
MIRT645591 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT646455 ZNF705A zinc finger protein 705A 2 2
MIRT656454 MAPK6 mitogen-activated protein kinase 6 2 2
MIRT676551 TMPPE transmembrane protein with metallophosphoesterase domain 2 4
MIRT682720 KIAA1456 KIAA1456 2 2
MIRT698307 TMEM2 transmembrane protein 2 2 2
MIRT701906 MMGT1 membrane magnesium transporter 1 2 2
MIRT702228 LONRF3 LON peptidase N-terminal domain and ring finger 3 2 2
MIRT708642 UBE2W ubiquitin conjugating enzyme E2 W 2 2
MIRT709326 HMBOX1 homeobox containing 1 2 2
MIRT711400 RANBP2 RAN binding protein 2 2 2
MIRT712130 TGFBR2 transforming growth factor beta receptor 2 2 2
MIRT714226 ARMC10 armadillo repeat containing 10 2 2
MIRT716914 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 2 2
MIRT723060 FGD6 FYVE, RhoGEF and PH domain containing 6 2 2
MIRT723846 MN1 MN1 proto-oncogene, transcriptional regulator 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-7161-5p Paclitaxel 36314 NSC125973 approved resistant High Ovarian Cancer cell line (HEYA8)

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