pre-miRNA Information
pre-miRNA hsa-mir-526b   
Genomic Coordinates chr19: 53694393 - 53694475
Description Homo sapiens miR-526b stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-526b-5p
Sequence 14| CUCUUGAGGGAAGCACUUUCUGU |36
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs527640376 1 dbSNP
rs1397075062 2 dbSNP
rs1462454250 5 dbSNP
rs774071640 7 dbSNP
rs1329470722 12 dbSNP
rs1471427006 13 dbSNP
rs375077514 15 dbSNP
rs1280430663 16 dbSNP
rs370046048 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF90   
Synonyms HTF9
Description zinc finger protein 90
Transcript NM_007138   
Expression
Putative miRNA Targets on ZNF90
3'UTR of ZNF90
(miRNA target sites are highlighted)
>ZNF90|NM_007138|3'UTR
   1 AATATTCCTCAACCCTTAATAAACATAAGATAATTCATACTGGAGAGAAACCGTATAAATGTGATGACTGTTGGAAAGCC
  81 TTTGACCACCCCTCTACTCTTACTAAATATGAGAATTTATATGAAACATAACTCCTACAAAAATAAAGAATGTGACAAAT
 161 CATTTTAAGGAAGTTCTCAACCCTTACTACACATAATTCATACTGGACGGAAACTCTACAGGTGTGAAAAATGCAGCAAA
 241 GCCTATAACAAGTTCTCAATTCTTTTTTTTTTTTTTTAAGAAGGAGTTTCATGCTTCTCACCCAGCCTGGAGTGCAATGG
 321 CACGATCTCTGCTCACTGCAACCTCTTCCTCCTGGTTCAAGCCATTAACCTGCTTCAGCCTCCACCACCATGCCCAACTA
 401 ATTTTTGTATTTTTGGTAGAGACAGGGTTTTGCCATATTTAACAGGCTGGTCTCCAACTGTGATTCACACACCTTGGCCT
 481 CCTAAAATGCTGGGATTACAGTCATGAGCATCCATGCCCAGCCACAAGTTCTCAGTTCTTAAGAGACATGGTGATAATTC
 561 ATGCTGAAGAGGAACTTTACAAACTTGAAAGATGTGACAGTGCTTTTACCACCACCTCCAACTTTTCTGTACATAAAGAT
 641 GATTATACTAGTGTGAAACCCTAGAAATAATAGAAAATTTGACAAATCCTTTATATGGTTGCAAGACTTGATTGTAGGTA
 721 AGATAATTCATACTGGCAAAACTCCTACAAGTGTGAAGAATGTGGGAAAACTTTTTAATCAGTGCATACACCTTATTTCA
 801 CAGGAAAGCTAGTATCCTTGAGAAAAATTGCACAATTATAAAAAATATGGAAAACCCATTAATGCCTACTCACATCTTAC
 881 CCAACAGAAGGTGGTTCACAGTTAATGAAAGCATTTAAAGTGCAATTATGCTCAAGAAATCTTTCAGAAAATAGAAGCCT
 961 TTAAAGTGAAGAAGAGTATTCTGAAGACAACCATTACACATATAAAGGGGGTTGTATTACCTTTACTTGCATCACAGATT
1041 TCATTGCACACATTTTGTACTAGAGGAAAACCCTGAAGCAGTTGCTCCAGCTTTGTTCAACAACAGGGAATTTATGTTAG
1121 AGAAGAATCCTGCAAATGTAGTGAATTTGGAAACAAATTTTTTTTCAAAAACTACAGCTTAGAAAACACCAGAGAGTTGA
1201 TACTAAAATATATGTTTGCAGAAACAGTAAATATAAAAAATATTTAATTCAAAATGAATTCCATGTAAATATCAGAGAAT
1281 TTACAGTAGAATAAGGCACTGATACTTCAGACATTACACTAAAACAGTGTTGAGTATAAAAAAGAATCCACAACAAAAAT
1361 TGTTAGATAAATTATATATAGCTTTAAAAGGTTTTTTGAAGCATTGTAATTACATTGAAAGTATACTTGCTTTCTTGAGA
1441 AAAAATTTTTGAAAAGTGAATAAGGTAATAGAGCTTTCAAATTTATGCTGTTACTTTATTTCTATTCACATGTGAAAGCA
1521 TGTGATCAATTGATGCTGCATCAGAGATATTACAGATTCTTTATTGGGCATTCCTTATAACCTTTTCTATTAAAGAGAAA
1601 GGATATTAAAATGTAAGATGCATGATGAAAATATAAGTGGACAGGCTGTTCGTATTTGACCTATATTAAGTAATGTATAA
1681 GGTAGTGTTCAGAGTAATACTTTTCTACATTATAGTGAGAGAAATTATGAATTACAGTTAAAGGTATATTAAATTACTGT
1761 ATTATTTTACTAATTTTATGTAATAAAATACACTACATTAAAAAATTGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1
miRNA  3' ugucUUUCACG--AA-GGGAGUUCUc 5'
              |||||||  || : ||||||| 
Target 5' atttAAAGTGCAATTATGCTCAAGAa 3'
913 - 938 165.00 -13.60
2
miRNA  3' ugucuUUCACGA--AGGGAGUUCUc 5'
               |||| ||   ::||:|||| 
Target 5' gccacAAGTTCTCAGTTCTTAAGAg 3'
521 - 545 140.00 -14.40
3
miRNA  3' ugUCUUUC-ACGAAGGGAGUUCUc 5'
            :||||| |  | :|||::||| 
Target 5' caGGAAAGCTAGTATCCTTGAGAa 3'
801 - 824 133.00 -11.60
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN9350486 3 COSMIC
COSN31517526 22 COSMIC
COSN30160671 26 COSMIC
COSN30725063 75 COSMIC
COSN19697257 96 COSMIC
COSN21990816 98 COSMIC
COSN20115574 278 COSMIC
COSN6139330 307 COSMIC
COSN1762124 314 COSMIC
COSN24003043 330 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs782249860 13 dbSNP
rs201631729 15 dbSNP
rs1267991823 16 dbSNP
rs782392870 25 dbSNP
rs782426550 26 dbSNP
rs1204888347 36 dbSNP
rs1018800749 37 dbSNP
rs1323583141 37 dbSNP
rs1284703906 38 dbSNP
rs536861777 52 dbSNP
rs782184289 53 dbSNP
rs990760631 54 dbSNP
rs1270412742 57 dbSNP
rs184261851 58 dbSNP
rs1386204966 59 dbSNP
rs16996689 61 dbSNP
rs1470287666 67 dbSNP
rs1408364717 69 dbSNP
rs551869351 74 dbSNP
rs1174122392 75 dbSNP
rs977647800 80 dbSNP
rs1414119582 88 dbSNP
rs782603588 90 dbSNP
rs1420413413 92 dbSNP
rs1188520213 95 dbSNP
rs1654275 96 dbSNP
rs1247840844 98 dbSNP
rs1056115275 99 dbSNP
rs1463093757 101 dbSNP
rs1257237677 104 dbSNP
rs533994190 105 dbSNP
rs1207331266 108 dbSNP
rs142387312 110 dbSNP
rs750787820 112 dbSNP
rs947821760 120 dbSNP
rs758798454 123 dbSNP
rs1362735226 128 dbSNP
rs1296666240 130 dbSNP
rs1453274501 133 dbSNP
rs1384992307 134 dbSNP
rs1301020718 135 dbSNP
rs1465559618 136 dbSNP
rs150881511 137 dbSNP
rs1172752224 139 dbSNP
rs1428117714 140 dbSNP
rs1389929814 147 dbSNP
rs898293402 154 dbSNP
rs1446824352 159 dbSNP
rs34413919 169 dbSNP
rs1254616323 173 dbSNP
rs1181809463 177 dbSNP
rs994061240 181 dbSNP
rs1025485623 184 dbSNP
rs1232997548 187 dbSNP
rs1206832356 188 dbSNP
rs1339709330 190 dbSNP
rs1273650271 191 dbSNP
rs891030178 194 dbSNP
rs1323300981 203 dbSNP
rs1310429727 207 dbSNP
rs541581895 209 dbSNP
rs1374118518 210 dbSNP
rs782141095 223 dbSNP
rs1408225159 225 dbSNP
rs1370113893 229 dbSNP
rs1018270153 230 dbSNP
rs1426889712 238 dbSNP
rs1367114402 244 dbSNP
rs1164649388 249 dbSNP
rs530210991 250 dbSNP
rs1420259086 260 dbSNP
rs1222801854 263 dbSNP
rs1250539656 263 dbSNP
rs1489317095 263 dbSNP
rs375392718 263 dbSNP
rs75364786 264 dbSNP
rs1263497907 271 dbSNP
rs990213445 276 dbSNP
rs1317516464 277 dbSNP
rs1290140746 278 dbSNP
rs1021822231 280 dbSNP
rs868970862 291 dbSNP
rs967511492 295 dbSNP
rs1388780576 296 dbSNP
rs1293372900 298 dbSNP
rs977574088 303 dbSNP
rs1347397492 317 dbSNP
rs1627721 324 dbSNP
rs188479679 325 dbSNP
rs1410626822 328 dbSNP
rs992267944 333 dbSNP
rs1434602339 336 dbSNP
rs916212978 350 dbSNP
rs1264995198 353 dbSNP
rs1208946663 360 dbSNP
rs1486079409 361 dbSNP
rs543626113 367 dbSNP
rs1038059685 377 dbSNP
rs1328533339 391 dbSNP
rs1284052634 392 dbSNP
rs1235683902 400 dbSNP
rs1329640194 410 dbSNP
rs1300856294 418 dbSNP
rs919770833 420 dbSNP
rs1319085717 424 dbSNP
rs1367825425 424 dbSNP
rs1457214808 426 dbSNP
rs782061832 427 dbSNP
rs1172723613 428 dbSNP
rs1467136924 436 dbSNP
rs1375510316 439 dbSNP
rs192882891 443 dbSNP
rs1428849937 445 dbSNP
rs1249701964 446 dbSNP
rs1186567339 447 dbSNP
rs1046879731 451 dbSNP
rs1464436334 453 dbSNP
rs782729775 458 dbSNP
rs1008114129 465 dbSNP
rs1040113390 471 dbSNP
rs1228470790 473 dbSNP
rs139375312 475 dbSNP
rs1011681377 478 dbSNP
rs551864760 480 dbSNP
rs1295924727 482 dbSNP
rs1435005414 483 dbSNP
rs532655284 488 dbSNP
rs1336730652 490 dbSNP
rs1399470732 501 dbSNP
rs1171604523 507 dbSNP
rs1021747211 509 dbSNP
rs1391767371 510 dbSNP
rs74432819 516 dbSNP
rs1448654157 521 dbSNP
rs782109420 528 dbSNP
rs1189567278 530 dbSNP
rs10419576 536 dbSNP
rs782789747 539 dbSNP
rs1255607936 546 dbSNP
rs1196581938 548 dbSNP
rs781905949 562 dbSNP
rs547840295 563 dbSNP
rs1344655246 564 dbSNP
rs1272757281 575 dbSNP
rs782440462 576 dbSNP
rs1360644012 579 dbSNP
rs1286427360 582 dbSNP
rs782588681 584 dbSNP
rs991715453 586 dbSNP
rs916248529 599 dbSNP
rs1338166342 604 dbSNP
rs1332990236 610 dbSNP
rs1410047567 611 dbSNP
rs1371957882 616 dbSNP
rs969050750 622 dbSNP
rs552855416 623 dbSNP
rs1428816014 627 dbSNP
rs1414298717 633 dbSNP
rs115423308 643 dbSNP
rs929721991 651 dbSNP
rs536415942 652 dbSNP
rs1046890142 661 dbSNP
rs1182903847 661 dbSNP
rs912359987 665 dbSNP
rs1204743982 671 dbSNP
rs185470017 672 dbSNP
rs1292524792 673 dbSNP
rs1227089019 684 dbSNP
rs1356340763 686 dbSNP
rs1280655235 688 dbSNP
rs1228411907 696 dbSNP
rs1351825875 709 dbSNP
rs1286031883 720 dbSNP
rs1408883517 727 dbSNP
rs1350230219 742 dbSNP
rs1039595189 743 dbSNP
rs1403532727 749 dbSNP
rs899736075 751 dbSNP
rs146590659 756 dbSNP
rs1409898705 762 dbSNP
rs754660007 763 dbSNP
rs1478510411 770 dbSNP
rs1219733309 772 dbSNP
rs1248812630 772 dbSNP
rs1451409313 773 dbSNP
rs1269270247 777 dbSNP
rs538174341 787 dbSNP
rs1043074931 790 dbSNP
rs1330567812 793 dbSNP
rs1227386498 803 dbSNP
rs1367952534 817 dbSNP
rs1276261732 818 dbSNP
rs1433967347 821 dbSNP
rs903302572 823 dbSNP
rs1321104598 831 dbSNP
rs782495788 832 dbSNP
rs1386523846 833 dbSNP
rs1158606320 834 dbSNP
rs782643032 835 dbSNP
rs1415112736 836 dbSNP
rs1036270608 840 dbSNP
rs1427462249 846 dbSNP
rs565505012 849 dbSNP
rs1249081898 856 dbSNP
rs570234776 857 dbSNP
rs1191034471 859 dbSNP
rs960210074 864 dbSNP
rs1245664090 866 dbSNP
rs1214375391 876 dbSNP
rs1312288062 890 dbSNP
rs1280248368 896 dbSNP
rs1217157637 897 dbSNP
rs1344003098 900 dbSNP
rs1298135415 902 dbSNP
rs1013597691 906 dbSNP
rs1362859289 908 dbSNP
rs782264891 912 dbSNP
rs1448793449 916 dbSNP
rs1361002348 917 dbSNP
rs1023242583 918 dbSNP
rs1414169518 921 dbSNP
rs1391155878 922 dbSNP
rs141208175 932 dbSNP
rs1448051741 934 dbSNP
rs1247896290 937 dbSNP
rs973745560 953 dbSNP
rs1483272521 958 dbSNP
rs1026576922 959 dbSNP
rs1238752019 965 dbSNP
rs951138845 966 dbSNP
rs1207565408 973 dbSNP
rs1485176546 982 dbSNP
rs28507750 993 dbSNP
rs1230264287 1011 dbSNP
rs1339835533 1012 dbSNP
rs1294724576 1017 dbSNP
rs1228864414 1020 dbSNP
rs1381405282 1023 dbSNP
rs1301230695 1032 dbSNP
rs1447567998 1039 dbSNP
rs1371329595 1044 dbSNP
rs1310103571 1047 dbSNP
rs371132518 1055 dbSNP
rs1389988568 1058 dbSNP
rs1166079197 1060 dbSNP
rs1426135476 1061 dbSNP
rs1415321182 1064 dbSNP
rs943916341 1069 dbSNP
rs1474601196 1082 dbSNP
rs556171637 1086 dbSNP
rs1206893482 1087 dbSNP
rs143600607 1101 dbSNP
rs921230556 1102 dbSNP
rs1250601532 1113 dbSNP
rs1222200445 1119 dbSNP
rs1323500760 1120 dbSNP
rs947278367 1121 dbSNP
rs1043087091 1122 dbSNP
rs782686792 1125 dbSNP
rs903144445 1131 dbSNP
rs1290411342 1140 dbSNP
rs34682554 1149 dbSNP
rs1408285191 1155 dbSNP
rs1370323866 1156 dbSNP
rs1459769473 1158 dbSNP
rs555073280 1158 dbSNP
rs1348585946 1159 dbSNP
rs1164716899 1166 dbSNP
rs58607586 1168 dbSNP
rs1474573415 1177 dbSNP
rs574893364 1180 dbSNP
rs1183875542 1181 dbSNP
rs1471441785 1183 dbSNP
rs1249552974 1188 dbSNP
rs1191487225 1191 dbSNP
rs1489349124 1191 dbSNP
rs1263557030 1195 dbSNP
rs1213032776 1198 dbSNP
rs1329905711 1200 dbSNP
rs543237655 1205 dbSNP
rs1226790891 1208 dbSNP
rs782170749 1212 dbSNP
rs1023549670 1214 dbSNP
rs1302257932 1226 dbSNP
rs899434132 1231 dbSNP
rs1365966149 1235 dbSNP
rs1325788761 1236 dbSNP
rs1458275836 1239 dbSNP
rs577586408 1251 dbSNP
rs373380488 1253 dbSNP
rs1026627598 1255 dbSNP
rs563526857 1270 dbSNP
rs1362801868 1273 dbSNP
rs1176363779 1274 dbSNP
rs951024139 1278 dbSNP
rs982842754 1282 dbSNP
rs1265061198 1287 dbSNP
rs1192915321 1303 dbSNP
rs1465342358 1307 dbSNP
rs1249817573 1324 dbSNP
rs1206833505 1326 dbSNP
rs1350070267 1330 dbSNP
rs868990574 1332 dbSNP
rs1235752765 1338 dbSNP
rs1256766361 1338 dbSNP
rs1310788319 1338 dbSNP
rs965498671 1338 dbSNP
rs975306680 1343 dbSNP
rs1303211085 1345 dbSNP
rs1436466623 1351 dbSNP
rs921064548 1355 dbSNP
rs1319147136 1361 dbSNP
rs532301059 1367 dbSNP
rs1383660426 1368 dbSNP
rs77945365 1377 dbSNP
rs978650509 1379 dbSNP
rs924617804 1380 dbSNP
rs1172709505 1384 dbSNP
rs1449857164 1389 dbSNP
rs534647647 1390 dbSNP
rs1186626308 1391 dbSNP
rs181989643 1397 dbSNP
rs1446468048 1402 dbSNP
rs1257013707 1404 dbSNP
rs1202385352 1405 dbSNP
rs1482440153 1414 dbSNP
rs1279890951 1415 dbSNP
rs374932732 1416 dbSNP
rs114963960 1420 dbSNP
rs1295996310 1423 dbSNP
rs1227402173 1424 dbSNP
rs948782720 1435 dbSNP
rs1044575057 1439 dbSNP
rs1334316668 1441 dbSNP
rs899317771 1445 dbSNP
rs1373176733 1447 dbSNP
rs995065444 1455 dbSNP
rs1311915004 1459 dbSNP
rs1430118815 1463 dbSNP
rs1372220448 1465 dbSNP
rs1166070166 1470 dbSNP
rs1369126726 1491 dbSNP
rs1475078315 1491 dbSNP
rs1189635117 1497 dbSNP
rs528030178 1503 dbSNP
rs1257018077 1510 dbSNP
rs1422147854 1510 dbSNP
rs1206179407 1516 dbSNP
rs1484224696 1520 dbSNP
rs1273003343 1525 dbSNP
rs1195727871 1526 dbSNP
rs782323447 1533 dbSNP
rs11883367 1537 dbSNP
rs1246285967 1543 dbSNP
rs1353051647 1547 dbSNP
rs1292258634 1554 dbSNP
rs1410104310 1557 dbSNP
rs1019691051 1562 dbSNP
rs965165519 1565 dbSNP
rs1409161496 1566 dbSNP
rs1391290828 1569 dbSNP
rs1164958882 1570 dbSNP
rs1459907323 1573 dbSNP
rs1417300860 1574 dbSNP
rs567778739 1578 dbSNP
rs1183144492 1579 dbSNP
rs996961705 1582 dbSNP
rs147354751 1583 dbSNP
rs1231398074 1588 dbSNP
rs781932660 1592 dbSNP
rs1181461629 1598 dbSNP
rs1452573108 1602 dbSNP
rs1028177450 1604 dbSNP
rs1208621017 1614 dbSNP
rs780559659 1614 dbSNP
rs1332000900 1615 dbSNP
rs1272056413 1623 dbSNP
rs1228618795 1628 dbSNP
rs1351879941 1634 dbSNP
rs1277424267 1635 dbSNP
rs1441154383 1644 dbSNP
rs530663606 1645 dbSNP
rs550083150 1646 dbSNP
rs782231696 1652 dbSNP
rs1393821381 1653 dbSNP
rs924545676 1664 dbSNP
rs956146564 1666 dbSNP
rs1405997796 1667 dbSNP
rs1158241839 1674 dbSNP
rs117505217 1676 dbSNP
rs917201309 1677 dbSNP
rs1248868057 1678 dbSNP
rs948852497 1681 dbSNP
rs1192292269 1684 dbSNP
rs1468479853 1686 dbSNP
rs1249196624 1688 dbSNP
rs538871241 1695 dbSNP
rs1330631664 1696 dbSNP
rs375755586 1697 dbSNP
rs1281654192 1699 dbSNP
rs552860394 1706 dbSNP
rs1345429759 1708 dbSNP
rs1276463658 1709 dbSNP
rs1438443916 1710 dbSNP
rs1370081089 1717 dbSNP
rs1321161038 1719 dbSNP
rs1437317851 1729 dbSNP
rs1343551201 1733 dbSNP
rs747711990 1734 dbSNP
rs566399376 1736 dbSNP
rs72998610 1756 dbSNP
rs1172091102 1758 dbSNP
rs1391272469 1760 dbSNP
rs1454118412 1760 dbSNP
rs773172144 1760 dbSNP
rs1191093186 1762 dbSNP
rs1486545500 1764 dbSNP
rs930837824 1765 dbSNP
rs555038483 1770 dbSNP
rs1282035105 1782 dbSNP
rs1442567158 1782 dbSNP
rs1231737740 1785 dbSNP
rs1346917339 1789 dbSNP
rs75139372 1791 dbSNP
rs886726681 1792 dbSNP
rs1009529957 1798 dbSNP
rs1269744754 1800 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000418063.2 | 3UTR | UCAAGAAAUCUUUCAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000418063.2 | 3UTR | UCAAGAAAUCUUUCAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE21032 Prostate cancer 0.287 4.3e-3 0.316 1.8e-3 83 Click to see details
GSE28260 Renal cortex and medulla 0.643 8.9e-3 0.611 1.3e-2 13 Click to see details
GSE28544 Breast cancer -0.374 3.6e-2 -0.247 1.2e-1 24 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.324 5.7e-2 -0.272 9.4e-2 25 Click to see details
GSE14794 Lymphoblastoid cells 0.158 6.8e-2 0.124 1.2e-1 90 Click to see details
GSE32688 Pancreatic cancer -0.193 1.4e-1 -0.184 1.6e-1 32 Click to see details
GSE19350 CNS germ cell tumors -0.284 1.9e-1 0.063 4.2e-1 12 Click to see details
GSE21687 Ependynoma primary tumors -0.088 2.4e-1 -0.159 1.0e-1 64 Click to see details
GSE38226 Liver fibrosis 0.136 2.8e-1 -0.181 2.2e-1 21 Click to see details
GSE17306 Multiple myeloma 0.078 3.0e-1 0.146 1.6e-1 49 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.11 3.2e-1 0.104 3.3e-1 20 Click to see details
GSE19783 ER- ER- breast cancer -0.045 3.5e-1 -0.007 4.8e-1 79 Click to see details
GSE26953 Aortic valvular endothelial cells -0.076 3.6e-1 -0.056 4.0e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.061 3.9e-1 0.109 3.0e-1 25 Click to see details
GSE19536 Breast cancer -0.029 3.9e-1 0.007 4.7e-1 100 Click to see details
GSE19783 ER+ ER+ breast cancer 0.038 4.4e-1 0.146 2.7e-1 20 Click to see details
GSE19783 ER+ ER+ breast cancer 0.038 4.4e-1 0.146 2.7e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BLCA 0.599 0.06 0.262 0.27 8 Click to see details
LUSC 0.533 0.07 0.500 0.09 9 Click to see details
THCA -0.354 0.09 0.115 0.34 16 Click to see details
UCEC 0.795 0.1 0.800 0.1 4 Click to see details
LIHC 0.422 0.13 0.467 0.1 9 Click to see details
BRCA -0.149 0.14 -0.101 0.23 56 Click to see details
STAD 0.561 0.16 0.300 0.31 5 Click to see details
PRAD 0.203 0.25 0.132 0.33 13 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
HNSC -0.016 0.47 -0.063 0.4 20 Click to see details
234 hsa-miR-526b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT382022 FAM49B family with sequence similarity 49 member B 2 2
MIRT442559 CAB39 calcium binding protein 39 2 2
MIRT443783 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443886 CNKSR3 CNKSR family member 3 2 2
MIRT443970 SSH2 slingshot protein phosphatase 2 2 2
MIRT444050 PROX2 prospero homeobox 2 2 2
MIRT444128 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444144 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT444171 RBM7 RNA binding motif protein 7 2 2
MIRT444185 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT444217 METTL12 methyltransferase like 12 2 2
MIRT444474 WNT5A Wnt family member 5A 2 2
MIRT444582 GPR89B G protein-coupled receptor 89B 2 2
MIRT444659 TSPAN14 tetraspanin 14 2 2
MIRT444755 LUZP1 leucine zipper protein 1 2 2
MIRT444768 ZNF90 zinc finger protein 90 2 2
MIRT444862 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT444904 KIAA1841 KIAA1841 2 2
MIRT444941 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT444966 CDH7 cadherin 7 2 2
MIRT445008 TMEM106B transmembrane protein 106B 2 2
MIRT445014 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445036 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT445045 PURB purine rich element binding protein B 2 2
MIRT445075 CXXC4 CXXC finger protein 4 2 2
MIRT445148 KLHL23 kelch like family member 23 2 2
MIRT445228 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT445258 C9orf66 chromosome 9 open reading frame 66 2 2
MIRT445263 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT445413 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT445431 ESD esterase D 2 2
MIRT445475 KDM6A lysine demethylase 6A 2 2
MIRT445618 CLIC4 chloride intracellular channel 4 2 2
MIRT445709 RBL1 RB transcriptional corepressor like 1 2 2
MIRT445736 ITM2A integral membrane protein 2A 2 2
MIRT445787 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445796 IFIT1 interferon induced protein with tetratricopeptide repeats 1 2 2
MIRT445801 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT445805 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT445814 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT445861 ZNF451 zinc finger protein 451 2 2
MIRT445871 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445964 IKZF5 IKAROS family zinc finger 5 2 2
MIRT445974 TSPYL1 TSPY like 1 2 2
MIRT446013 VNN1 vanin 1 2 2
MIRT446021 HBS1L HBS1 like translational GTPase 2 2
MIRT446080 RCOR3 REST corepressor 3 2 2
MIRT446084 SLC30A10 solute carrier family 30 member 10 2 2
MIRT446102 TSC22D2 TSC22 domain family member 2 2 2
MIRT446174 ZNF37A zinc finger protein 37A 2 2
MIRT446185 FGF1 fibroblast growth factor 1 2 2
MIRT446197 GTPBP4 GTP binding protein 4 2 2
MIRT446212 SLC25A44 solute carrier family 25 member 44 2 2
MIRT446229 C17orf80 chromosome 17 open reading frame 80 2 2
MIRT446311 TBC1D8B TBC1 domain family member 8B 2 2
MIRT446362 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT446383 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446411 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446535 GOLGA8B golgin A8 family member B 2 2
MIRT446544 ASTN2 astrotactin 2 2 2
MIRT446563 IDS iduronate 2-sulfatase 2 2
MIRT446569 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT446596 AKAP1 A-kinase anchoring protein 1 2 2
MIRT446703 FUT10 fucosyltransferase 10 2 2
MIRT446778 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT446782 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT446787 KIF1C kinesin family member 1C 2 2
MIRT446795 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT446801 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT446841 FOXP1 forkhead box P1 2 2
MIRT446848 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT446865 NBPF3 NBPF member 3 2 2
MIRT446883 TRIM25 tripartite motif containing 25 2 2
MIRT446904 RGS5 regulator of G protein signaling 5 2 2
MIRT446910 GPR89A G protein-coupled receptor 89A 2 2
MIRT446931 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT446942 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446976 SUSD5 sushi domain containing 5 2 2
MIRT447005 RSF1 remodeling and spacing factor 1 2 2
MIRT447027 TACR3 tachykinin receptor 3 2 2
MIRT447037 ZNF439 zinc finger protein 439 2 2
MIRT447050 STARD5 StAR related lipid transfer domain containing 5 2 2
MIRT447056 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447145 HHIP hedgehog interacting protein 2 2
MIRT447152 PRSS12 protease, serine 12 2 2
MIRT447179 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447198 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2 2
MIRT447210 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447238 IHH indian hedgehog 2 2
MIRT447271 FZD5 frizzled class receptor 5 2 2
MIRT447322 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447390 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT447409 MED21 mediator complex subunit 21 2 2
MIRT447478 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT447549 C14orf37 chromosome 14 open reading frame 37 2 2
MIRT447628 NDST4 N-deacetylase and N-sulfotransferase 4 2 2
MIRT447645 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT447694 OGN osteoglycin 2 2
MIRT447733 MOCOS molybdenum cofactor sulfurase 2 2
MIRT447739 C12orf4 chromosome 12 open reading frame 4 2 2
MIRT447868 TRNT1 tRNA nucleotidyl transferase 1 2 2
MIRT447979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT447992 CDX1 caudal type homeobox 1 2 2
MIRT448067 SLC25A43 solute carrier family 25 member 43 2 2
MIRT448113 SEMA4G semaphorin 4G 2 2
MIRT448129 CCDC80 coiled-coil domain containing 80 2 2
MIRT448171 ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 2 2
MIRT448299 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT448447 SMC3 structural maintenance of chromosomes 3 2 2
MIRT448467 SLC45A4 solute carrier family 45 member 4 2 2
MIRT448472 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT448481 SEMA4F ssemaphorin 4F 2 2
MIRT448747 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448765 GOLGA8A golgin A8 family member A 2 2
MIRT448830 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT448852 FEM1C fem-1 homolog C 2 2
MIRT448899 CLOCK clock circadian regulator 2 2
MIRT448905 CLCN6 chloride voltage-gated channel 6 2 4
MIRT448951 CDK19 cyclin dependent kinase 19 2 2
MIRT448974 CADM2 cell adhesion molecule 2 2 2
MIRT449021 AMER2 APC membrane recruitment protein 2 2 2
MIRT449053 NUDT3 nudix hydrolase 3 2 2
MIRT449065 ZNF24 zinc finger protein 24 2 2
MIRT449069 CNDP2 carnosine dipeptidase 2 2 2
MIRT449120 XRRA1 X-ray radiation resistance associated 1 2 2
MIRT449177 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT449304 PARP3 poly(ADP-ribose) polymerase family member 3 2 2
MIRT449319 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449345 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT449424 GPR75 G protein-coupled receptor 75 2 2
MIRT449440 STAMBP STAM binding protein 2 2
MIRT449474 ZNF84 zinc finger protein 84 2 2
MIRT449504 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449599 INIP INTS3 and NABP interacting protein 2 4
MIRT449611 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT449630 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT449654 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT449679 CDR1 cerebellar degeneration related protein 1 2 2
MIRT449730 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT449777 NUDT16 nudix hydrolase 16 2 2
MIRT449826 TLR4 toll like receptor 4 2 2
MIRT449832 AGK acylglycerol kinase 2 2
MIRT449855 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT449927 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT450126 NSUN3 NOP2/Sun RNA methyltransferase family member 3 2 2
MIRT450202 ABHD15 abhydrolase domain containing 15 2 2
MIRT450243 TRIM66 tripartite motif containing 66 2 2
MIRT450268 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450337 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450341 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT450344 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT450374 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT450408 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT450427 CPOX coproporphyrinogen oxidase 2 2
MIRT450451 ZDHHC2 zinc finger DHHC-type containing 2 2 2
MIRT450463 ENOX1 ecto-NOX disulfide-thiol exchanger 1 2 2
MIRT450527 PGLS 6-phosphogluconolactonase 2 2
MIRT450540 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450631 ZNF654 zinc finger protein 654 2 2
MIRT450652 TMEM70 transmembrane protein 70 2 2
MIRT450670 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT450685 RPN2 ribophorin II 2 2
MIRT450707 RNF152 ring finger protein 152 2 2
MIRT450765 PPAPDC2 phospholipid phosphatase 6 2 2
MIRT450812 LIFR LIF receptor alpha 2 2
MIRT450867 GPR107 G protein-coupled receptor 107 2 2
MIRT464938 TXLNA taxilin alpha 2 4
MIRT472332 NETO2 neuropilin and tolloid like 2 2 2
MIRT478672 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT485664 CDC25B cell division cycle 25B 2 2
MIRT497300 CD300LB CD300 molecule like family member b 2 2
MIRT497587 SLC23A1 solute carrier family 23 member 1 2 2
MIRT497762 KIAA0895 KIAA0895 2 2
MIRT497815 STAT5B signal transducer and activator of transcription 5B 2 2
MIRT497827 GPR26 G protein-coupled receptor 26 2 2
MIRT497855 LGR5 leucine rich repeat containing G protein-coupled receptor 5 2 2
MIRT497975 XBP1P1 X-box binding protein 1 pseudogene 1 2 2
MIRT498178 CREB1 cAMP responsive element binding protein 1 2 2
MIRT498333 PRELID2 PRELI domain containing 2 2 2
MIRT501771 NRBF2 nuclear receptor binding factor 2 2 6
MIRT504823 RAP2A RAP2A, member of RAS oncogene family 2 6
MIRT510498 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT513131 ZNF431 zinc finger protein 431 2 2
MIRT524341 CREBRF CREB3 regulatory factor 2 4
MIRT528236 SPIN4 spindlin family member 4 2 2
MIRT534138 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT535420 PDZD8 PDZ domain containing 8 2 2
MIRT535876 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT540789 TMOD2 tropomodulin 2 2 2
MIRT540925 OIP5 Opa interacting protein 5 2 2
MIRT544028 STAM signal transducing adaptor molecule 2 2
MIRT546027 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT551818 TMEM138 transmembrane protein 138 2 2
MIRT556115 MLEC malectin 2 4
MIRT557669 GATA6 GATA binding protein 6 2 2
MIRT568897 MGRN1 mahogunin ring finger 1 2 2
MIRT573538 MDM2 MDM2 proto-oncogene 2 2
MIRT615473 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT618257 DDX51 DEAD-box helicase 51 2 2
MIRT619905 FAM43B family with sequence similarity 43 member B 2 2
MIRT621109 SP110 SP110 nuclear body protein 2 2
MIRT622331 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622682 PLSCR1 phospholipid scramblase 1 2 2
MIRT624095 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT628661 FAM83C family with sequence similarity 83 member C 2 2
MIRT639259 MANEAL mannosidase endo-alpha like 2 2
MIRT641171 LYPLA1 lysophospholipase I 2 2
MIRT642966 FUT6 fucosyltransferase 6 2 2
MIRT643539 SLC25A17 solute carrier family 25 member 17 2 2
MIRT648679 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649446 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 2 2
MIRT651353 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT651565 WHSC1L1 nuclear receptor binding SET domain protein 3 2 2
MIRT652242 TPPP tubulin polymerization promoting protein 2 2
MIRT653925 SERPINC1 serpin family C member 1 2 2
MIRT654113 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658395 FAM221B family with sequence similarity 221 member B 2 2
MIRT658581 EPHB1 EPH receptor B1 2 2
MIRT660026 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT661405 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT664138 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT665655 TRIM33 tripartite motif containing 33 2 2
MIRT691641 SLC43A3 solute carrier family 43 member 3 2 2
MIRT692708 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693859 IYD iodotyrosine deiodinase 2 2
MIRT702910 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT705052 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705124 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT705534 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT708676 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT709868 A1CF APOBEC1 complementation factor 2 2
MIRT715657 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT716567 DLGAP2 DLG associated protein 2 2 2
MIRT737090 SIK2 salt inducible kinase 2 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-526b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-526b 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-526b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-526b Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-526b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-526b-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, H3122)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-526b-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-526b-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-526b-5p Testosterone+Letrozole sensitive cell line (MCF-7)
hsa-miR-526b-5p Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-526b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (HCT15)
hsa-miR-526b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-526b-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-526b-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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