miRTarBase - #MIRT444997


—
pre-miRNA Information
pre-miRNA hsa-mir-4731   
Genomic Coordinates chr17: 15251627 - 15251696
Description Homo sapiens miR-4731 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4731-5p
Sequence 10| UGCUGGGGGCCACAUGAGUGUG |31
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1295173963 9 dbSNP
rs1227560397 15 dbSNP
rs972231157 18 dbSNP
Putative Targets

Gene Information
Gene Symbol HRH1   
Synonyms H1-R, H1R, HH1R, hisH1
Description histamine receptor H1
Transcript NM_000861   
Other Transcripts NM_001098211 , NM_001098212 , NM_001098213   
Expression
Putative miRNA Targets on HRH1
3'UTR of HRH1
(miRNA target sites are highlighted)		 
>HRH1|NM_000861|3'UTR
   1 GGGAGGCTCTGAGGGGATGCAACAAAATGATCCTTATGATGTCCAACAAGGAAATAGAGGACGAAGGCCTGTGTGTTGCC
  81 AGGCAGGCACCTGGGCTTTCTGGAATCCAAACCACAGTCTTAGGGGCTTGGTAGTTTGGAAAGTTCTTAGGCACCATAGA
 161 AGAACAGCAGATGGCGGTGATCAGCAGAGAGATTGAACTTTGAGGAGGAAGCAGAATCTTTGCAAGAAAGTCAGACCTGT
 241 TTCTTGTAACTGGGTTCAAAAAGAAAAAAATAATAAAAATAAAAGAGAGAGAGAATCAGACCTGGGTGGAACTCTCCTGC
 321 TCCTCAGGAACTATGGGAGCCTCAGACTCATTGTAATTCAAGCTTTCCGAGTCAAGTGATTGACAACTGAAGAGACACGT
 401 GGCTAGGGTTCCACTGGAGAATTGAAAAGGACTCTTGAGCCCTCCTGGAATGGAGCTGTATAACTGTGCAGAGACTTTAT
 481 CCATGCCAATAGTTGCTGTCCCCTTCCAGGGGTCACCTTGAGAGGCATGACAGCTGTTCCACAGGGGCTATCCCTTCTCA
 561 GAAAACTTCTCTTCTGAGCCTCTTTAACAGCTTTCTCCAGAACCAGTGTCTGAACCACCCTGGAAATTCTGCCTTATTAT
 641 TTCTTACTCAAACATGTTTAGAGTGGATAGAAAATTATGCAGCTTGCACACCCATCGTCTTTAACCCCAAATTTCCTTTG
 721 GCTATTAAAAAAGTGGTGGCAAAAGACATCCTCAAAAGAAAGAGAAATGAAATATTTTTGAATGGTTGCACGTTAAAAAT
 801 TAAAAGAAGGAATGGGGGCAGAATGCCATATTTTTGAGGGCTGTACTAGGTTTATCTCATTTAAGCCCCACAACACCCCA
 881 CAGGAGGGTAATTTTCTAACTCTAGTTTGCAGAGGAGCAAATTGAGGTTCAGCAAGGTGAGAGAGGTACCCAAGGTCACA
 961 TAGCTAGTTATGTGAGAAAGTTAGAGTACAGATCCTCTGGGGTTTCAGCTTATTGTAGCATATTTTCTCCGAAAGGCAAA
1041 AATGTGCCCTTTTGGCCGGGCATGGTAGCTCAAGCCTATAATCCCAGCATGTTGAGAGGCTGAGGTGGGCAGATCATTTG
1121 AGGCCAGGAGTTCAAGACCAGTCTGGCCAATATGGAGAAACCTTGTCTCTACTAAAAACACAAAAATTATCTGGGCATGG
1201 TGGGGCATGCCTGTAGTCCCACTTACTTGGGAGGCCGAGGCACGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCCGTG
1281 AGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAATACAATATTTTAAC
1361 AATGTGCCCTCTTAAGTGTGCACAGATACACATACACGGTATTCCCAAGAGTGGTGGCAGCTCAAAATGATATGTTTGAG
1441 TAGACGAACAGCTGACATGGAGTTCCCGTGCACCTACGGAAGGGGACGCTTTGAAGGAACCAAGTGCATTTTTATCTGTG
1521 AGTTCTGTTGTGTTTGTCAAAAAGTCATTGTAATCTTTCATAGCCATACCTGGTAAGCAAAAACTAGTAAAGACATAGGA
1601 ACATGTAGTTTTACTTGGTGTTTATGTTGCAATCTGGTTGTGATTTATATTTTAAAGCTTGGTGCTAAACCACAATATGT
1681 ATAGCATATGGAGTGCCTGTACAAGCTGATGTTTTGTATTTTGTGTTCCTCTTTGCATGATCTGTCAAAGTGAGATATTT
1761 TTACCTGCCTAAAATATGATGTTTAAAAGCATACTCTATGTGATTTATTTATTTCTACCTTTCTGAGTCTCTTGGACTAA
1841 GAAGATGTTTTGAAATGTACCATCAAATGTTAACAGAGTTTGATATGGGCTTTCTCTTTGGTTTCTCATCACATTTGTAA
1921 ATGTCTTTTCAAAAGGATTTACTTTTTGTAAAAAGCTTCATTCTCACTCTGCTTTGCATCCCCCAAACTTCTTGTTCAAA
2001 ACGGGGGGAGTTTAGGAGACTTTAATCCCGGTTTCAGAAGCTGCAGCTGGTCTGTTTCCAGGTCAGAAACCATTGTTCAG
2081 AAGACCTCCCTGTGAGAGAGTTGCTCCTCAGGGTCCCTCAGGACCAAAGAACACTCGAAAAGAGCACTTCACACAGACAA
2161 GTGGCTAAGTGTCCATTATTTACCTTGAACAATCAAGGCAACTAGTGGAGAGAACTGATTGTGAGCTCTGCCTCTGGGTC
2241 AGAGAGACCTGGATTTGAGTCTGACAAGAACAAGAAATGGTCAATAAATATAAATTACCAGCGTCTAAGGAACAAGGTCT
2321 ATGCATTATTGTATACAGTGTCTCTAGTGCTTGTATAGTGTCTGGTATACAGAGGGCACTCCTATGCATTTTTAAAACAT
2401 GCTGAGCACATACCATGTGCCAGGCTTTGTGTTTTATCTAATGTTATCTAATGGTATTGGTGCCATTATGTAATGTTGCC
2481 TTTACAACAACCTCATGAGGGAGATTTCCATCTTTACAAATAGGCAAACTGAGGCCCAGAGAGATTGAGGAACTGCTCCG
2561 AGGTCTGATTCTGGAATGTGCTTCCTTTCCACTTTATCAATCTGCTCTTCGTACTCCTGTCTGAACGATGGAAATTAATT
2641 TTTGAATGTATAAAAGACAACAGACTATGATACAGAAATGTCAGCCCCAGCCCACTAAGAAAGCCCCAGCCCATCAGTGG
2721 CTAATGGCTTTAATAAATTGGTCATTTGGCTAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guGUGAGUACACCGGGGGUCGu 5'
            ||   ||||   ||||||| 
Target 5' taCAGAAATGTCAGCCCCAGCc 3'
 2671 - 2692 152.00 -17.30
2 
miRNA  3' guGUGAGUACACCGGGGGUCGu 5'
            ||| |   ||  |:||||| 
Target 5' atCACGCCACTGCACTCCAGCc 3'
 1288 - 1309 136.00 -17.80
3 
miRNA  3' guGUGAGUACACCGGGGGUCGU--- 5'
            |||| | |    |||||||    
Target 5' ccCACT-AAGAAAGCCCCAGCCCAT 3'
 2691 - 2714 135.00 -15.66
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30481978 2 COSMIC
COSN23594084 3 COSMIC
COSN5035648 3 COSMIC
COSN5035649 4 COSMIC
COSN30156700 12 COSMIC
COSN30526130 28 COSMIC
COSN1265393 33 COSMIC
COSN30480647 52 COSMIC
COSN30181321 61 COSMIC
COSN30450512 64 COSMIC
COSN29243181 66 COSMIC
COSN30109610 81 COSMIC
COSN30123809 120 COSMIC
COSN30483471 139 COSMIC
COSN30112622 155 COSMIC
COSN30180799 176 COSMIC
COSN15763495 180 COSMIC
COSN30138684 181 COSMIC
COSN26585188 223 COSMIC
COSN31589897 251 COSMIC
COSN26573563 264 COSMIC
COSN31578863 271 COSMIC
COSN31602727 326 COSMIC
COSN15624509 453 COSMIC
COSN17181953 613 COSMIC
COSN22977362 637 COSMIC
COSN30534165 645 COSMIC
COSN28766685 698 COSMIC
COSN22000161 785 COSMIC
COSN22066680 820 COSMIC
COSN31563227 950 COSMIC
COSN23420154 1032 COSMIC
COSN30528062 1043 COSMIC
COSN26648960 1068 COSMIC
COSN9111963 1099 COSMIC
COSN31551537 1124 COSMIC
COSN24299621 1313 COSMIC
COSN23040821 1347 COSMIC
COSN30532563 1402 COSMIC
COSN31778294 1411 COSMIC
COSN15624510 1460 COSMIC
COSN30118594 1460 COSMIC
COSN30142165 1556 COSMIC
COSN30534529 1699 COSMIC
COSN17647598 1764 COSMIC
COSN31517266 1766 COSMIC
COSN31522358 1837 COSMIC
COSN31566578 1877 COSMIC
COSN15624511 1970 COSMIC
COSN31593913 2002 COSMIC
COSN30117652 2009 COSMIC
COSN26958325 2016 COSMIC
COSN20090765 2021 COSMIC
COSN31555672 2044 COSMIC
COSN31959857 2067 COSMIC
COSN30540361 2092 COSMIC
COSN30172184 2110 COSMIC
COSN30172199 2120 COSMIC
COSN26958326 2137 COSMIC
COSN30138376 2138 COSMIC
COSN17584116 2145 COSMIC
COSN30534184 2173 COSMIC
COSN30534367 2251 COSMIC
COSN31538059 2303 COSMIC
COSN28766466 2389 COSMIC
COSN30543205 2399 COSMIC
COSN23701880 2405 COSMIC
COSN30124843 2452 COSMIC
COSN30132656 2464 COSMIC
COSN29640989 2555 COSMIC
COSN31542632 2557 COSMIC
COSN15624512 2559 COSMIC
COSN30134501 2750 COSMIC
rs346068 747 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs780030834 3 dbSNP
rs546954000 7 dbSNP
rs1165598392 8 dbSNP
rs1399125886 9 dbSNP
rs1291526118 13 dbSNP
rs558952658 19 dbSNP
rs781430466 22 dbSNP
rs906542807 24 dbSNP
rs1247699407 26 dbSNP
rs532848763 30 dbSNP
rs1386195877 32 dbSNP
rs770097130 33 dbSNP
rs1332687630 36 dbSNP
rs548266241 41 dbSNP
rs1235528632 45 dbSNP
rs200338344 48 dbSNP
rs1219848802 50 dbSNP
rs763185123 53 dbSNP
rs1003579702 56 dbSNP
rs201170181 63 dbSNP
rs887900662 64 dbSNP
rs199749810 68 dbSNP
rs1018219554 80 dbSNP
rs1238509814 82 dbSNP
rs1312077957 89 dbSNP
rs867224636 104 dbSNP
rs200699665 106 dbSNP
rs1464237477 115 dbSNP
rs959745243 117 dbSNP
rs1171106000 122 dbSNP
rs1228587968 135 dbSNP
rs867306560 136 dbSNP
rs201060044 139 dbSNP
rs1422892647 143 dbSNP
rs1005622610 144 dbSNP
rs371113844 145 dbSNP
rs199642041 151 dbSNP
rs1264307331 153 dbSNP
rs1247921896 158 dbSNP
rs200848971 160 dbSNP
rs1017531999 166 dbSNP
rs201855298 172 dbSNP
rs1257838503 175 dbSNP
rs199865702 176 dbSNP
rs973397922 177 dbSNP
rs1215152531 178 dbSNP
rs570709265 182 dbSNP
rs200608315 183 dbSNP
rs201724478 188 dbSNP
rs200067259 191 dbSNP
rs1176484086 194 dbSNP
rs748145095 204 dbSNP
rs1276687164 208 dbSNP
rs988508372 214 dbSNP
rs1419561224 215 dbSNP
rs772449726 223 dbSNP
rs1021370937 231 dbSNP
rs1164026841 232 dbSNP
rs910199557 238 dbSNP
rs1366776375 244 dbSNP
rs568627633 252 dbSNP
rs1175331167 260 dbSNP
rs1414937772 264 dbSNP
rs201219261 271 dbSNP
rs1156245759 272 dbSNP
rs202180123 274 dbSNP
rs78611023 275 dbSNP
rs201236680 277 dbSNP
rs945198556 280 dbSNP
rs1236057141 282 dbSNP
rs141806016 284 dbSNP
rs202143972 284 dbSNP
rs368468363 284 dbSNP
rs938563352 284 dbSNP
rs200595957 286 dbSNP
rs201054505 294 dbSNP
rs1237965435 302 dbSNP
rs201791741 303 dbSNP
rs1228201506 305 dbSNP
rs992711920 317 dbSNP
rs773496652 318 dbSNP
rs918538360 324 dbSNP
rs200339731 326 dbSNP
rs929308157 332 dbSNP
rs1319369756 334 dbSNP
rs572504650 335 dbSNP
rs186758589 337 dbSNP
rs1302037988 348 dbSNP
rs1448690462 350 dbSNP
rs201224954 352 dbSNP
rs887856197 361 dbSNP
rs1273283671 363 dbSNP
rs1418512216 363 dbSNP
rs199509386 369 dbSNP
rs906488844 370 dbSNP
rs1196407045 374 dbSNP
rs200664625 385 dbSNP
rs1234350409 386 dbSNP
rs111560166 387 dbSNP
rs79733405 399 dbSNP
rs200819849 400 dbSNP
rs1030578293 401 dbSNP
rs201664311 409 dbSNP
rs199671400 414 dbSNP
rs892092279 421 dbSNP
rs1286784509 432 dbSNP
rs200699265 446 dbSNP
rs1320124733 451 dbSNP
rs201859668 456 dbSNP
rs761121764 459 dbSNP
rs1228637336 473 dbSNP
rs1476218152 476 dbSNP
rs1357317339 479 dbSNP
rs1009888466 481 dbSNP
rs1021736605 482 dbSNP
rs1276286503 486 dbSNP
rs199887633 487 dbSNP
rs1165668524 490 dbSNP
rs540110323 491 dbSNP
rs1360685926 495 dbSNP
rs1299486969 497 dbSNP
rs1464225098 498 dbSNP
rs1456074916 502 dbSNP
rs1348869645 507 dbSNP
rs1001695284 511 dbSNP
rs200969733 522 dbSNP
rs766901774 530 dbSNP
rs897322413 537 dbSNP
rs1477776817 544 dbSNP
rs994327321 546 dbSNP
rs1447812236 549 dbSNP
rs992659974 555 dbSNP
rs1301600858 574 dbSNP
rs1487648024 582 dbSNP
rs201956466 587 dbSNP
rs200069108 589 dbSNP
rs573832025 595 dbSNP
rs1265038793 596 dbSNP
rs540962729 598 dbSNP
rs955643947 600 dbSNP
rs1336726099 605 dbSNP
rs201021837 606 dbSNP
rs1255914029 609 dbSNP
rs201623131 620 dbSNP
rs1218000957 624 dbSNP
rs558915767 624 dbSNP
rs918487600 632 dbSNP
rs1293327741 634 dbSNP
rs182129195 635 dbSNP
rs951331212 648 dbSNP
rs1366497114 655 dbSNP
rs1293801972 667 dbSNP
rs200253545 668 dbSNP
rs1397225722 671 dbSNP
rs201250089 679 dbSNP
rs1017708271 683 dbSNP
rs202148494 692 dbSNP
rs964371846 695 dbSNP
rs200599067 697 dbSNP
rs1809049 698 dbSNP
rs1195451762 708 dbSNP
rs1431564799 709 dbSNP
rs909224738 711 dbSNP
rs199638901 716 dbSNP
rs74365673 717 dbSNP
rs530648746 721 dbSNP
rs1486571976 725 dbSNP
rs945117356 726 dbSNP
rs1197704103 733 dbSNP
rs1318554141 734 dbSNP
rs759621487 736 dbSNP
rs1262502489 741 dbSNP
rs1442719991 746 dbSNP
rs977943498 746 dbSNP
rs346068 747 dbSNP
rs1397635498 749 dbSNP
rs199524641 756 dbSNP
rs1170193352 757 dbSNP
rs548147213 763 dbSNP
rs1377197884 770 dbSNP
rs933471628 779 dbSNP
rs1455751190 781 dbSNP
rs200603258 784 dbSNP
rs201947277 787 dbSNP
rs539795015 792 dbSNP
rs73812417 793 dbSNP
rs576423533 794 dbSNP
rs1252367213 802 dbSNP
rs1377686881 803 dbSNP
rs141321626 807 dbSNP
rs1010505152 812 dbSNP
rs555256191 819 dbSNP
rs1256087226 820 dbSNP
rs1042705714 822 dbSNP
rs201648493 829 dbSNP
rs573821197 837 dbSNP
rs1240387814 842 dbSNP
rs904195690 844 dbSNP
rs1339243214 846 dbSNP
rs540924263 850 dbSNP
rs1428127352 851 dbSNP
rs1271559802 854 dbSNP
rs199955469 856 dbSNP
rs200895420 861 dbSNP
rs201590072 872 dbSNP
rs1001242691 881 dbSNP
rs35607581 883 dbSNP
rs199914459 885 dbSNP
rs200973112 887 dbSNP
rs1470630256 888 dbSNP
rs202198591 916 dbSNP
rs959807477 927 dbSNP
rs1185064752 940 dbSNP
rs544573540 942 dbSNP
rs1441772301 946 dbSNP
rs1029812968 953 dbSNP
rs200486667 959 dbSNP
rs201383833 961 dbSNP
rs201942668 963 dbSNP
rs1014032097 973 dbSNP
rs1218278935 981 dbSNP
rs200265248 984 dbSNP
rs879131850 989 dbSNP
rs201420326 1001 dbSNP
rs199719137 1005 dbSNP
rs867435126 1010 dbSNP
rs1300930970 1014 dbSNP
rs951279150 1016 dbSNP
rs756082638 1022 dbSNP
rs1294489088 1031 dbSNP
rs200602570 1032 dbSNP
rs59282565 1044 dbSNP
rs1297642828 1045 dbSNP
rs1401516638 1055 dbSNP
rs115063631 1058 dbSNP
rs199645974 1059 dbSNP
rs200725289 1063 dbSNP
rs1445348362 1065 dbSNP
rs1418269112 1069 dbSNP
rs1218108657 1071 dbSNP
rs1242782061 1072 dbSNP
rs966479667 1073 dbSNP
rs748749922 1081 dbSNP
rs1261856846 1090 dbSNP
rs1193194105 1091 dbSNP
rs1189720297 1092 dbSNP
rs921992715 1095 dbSNP
rs1208846006 1097 dbSNP
rs201723139 1100 dbSNP
rs1274190120 1102 dbSNP
rs57887167 1102 dbSNP
rs1235738802 1105 dbSNP
rs200555611 1105 dbSNP
rs1051903498 1107 dbSNP
rs1277649215 1108 dbSNP
rs201462683 1111 dbSNP
rs1158572978 1114 dbSNP
rs200064792 1115 dbSNP
rs1321876027 1119 dbSNP
rs1404984070 1126 dbSNP
rs946286265 1129 dbSNP
rs1166759925 1134 dbSNP
rs1464007363 1150 dbSNP
rs1319639046 1152 dbSNP
rs868123342 1155 dbSNP
rs200997011 1156 dbSNP
rs960487883 1162 dbSNP
rs1345300935 1174 dbSNP
rs1001590536 1178 dbSNP
rs990742463 1178 dbSNP
rs1254034741 1179 dbSNP
rs1435241932 1194 dbSNP
rs201652926 1206 dbSNP
rs895543525 1213 dbSNP
rs1013979615 1214 dbSNP
rs1215638274 1215 dbSNP
rs1341644376 1220 dbSNP
rs199981325 1222 dbSNP
rs529557710 1232 dbSNP
rs201098376 1237 dbSNP
rs749344707 1238 dbSNP
rs548012223 1244 dbSNP
rs1005417960 1245 dbSNP
rs346069 1251 dbSNP
rs774815058 1252 dbSNP
rs1171424306 1261 dbSNP
rs200111508 1262 dbSNP
rs1396467036 1274 dbSNP
rs185961668 1278 dbSNP
rs202067799 1279 dbSNP
rs191119816 1286 dbSNP
rs1232660340 1291 dbSNP
rs149118062 1294 dbSNP
rs201714065 1297 dbSNP
rs201938510 1305 dbSNP
rs1007049524 1306 dbSNP
rs1451159572 1308 dbSNP
rs1212028282 1314 dbSNP
rs1040276422 1316 dbSNP
rs1348901358 1317 dbSNP
rs1469181781 1322 dbSNP
rs1178355508 1324 dbSNP
rs537141475 1327 dbSNP
rs1305962414 1329 dbSNP
rs954753140 1332 dbSNP
rs34221167 1336 dbSNP
rs577379514 1336 dbSNP
rs1232811081 1345 dbSNP
rs200392409 1346 dbSNP
rs201174644 1348 dbSNP
rs199756633 1354 dbSNP
rs200707106 1357 dbSNP
rs1012229397 1364 dbSNP
rs913353592 1370 dbSNP
rs1021975044 1371 dbSNP
rs1438682259 1372 dbSNP
rs1407734089 1385 dbSNP
rs966344417 1392 dbSNP
rs1471462494 1393 dbSNP
rs201061112 1398 dbSNP
rs978977208 1399 dbSNP
rs199703337 1404 dbSNP
rs960437021 1407 dbSNP
rs1214789150 1415 dbSNP
rs990707735 1437 dbSNP
rs916379484 1439 dbSNP
rs937623799 1442 dbSNP
rs200733201 1446 dbSNP
rs1396296504 1447 dbSNP
rs1441196094 1451 dbSNP
rs202046590 1455 dbSNP
rs962684311 1458 dbSNP
rs1415321703 1461 dbSNP
rs199827514 1467 dbSNP
rs1055367004 1468 dbSNP
rs555878284 1469 dbSNP
rs200709350 1475 dbSNP
rs201727624 1478 dbSNP
rs200072076 1479 dbSNP
rs760973226 1483 dbSNP
rs201222880 1488 dbSNP
rs577490108 1489 dbSNP
rs1198281553 1490 dbSNP
rs942772685 1495 dbSNP
rs201937204 1500 dbSNP
rs199988282 1508 dbSNP
rs761088515 1509 dbSNP
rs1439966252 1510 dbSNP
rs544932951 1530 dbSNP
rs201102744 1533 dbSNP
rs1474586601 1537 dbSNP
rs541200105 1539 dbSNP
rs775484749 1541 dbSNP
rs1261481979 1545 dbSNP
rs202235674 1550 dbSNP
rs1162101718 1551 dbSNP
rs200543917 1554 dbSNP
rs899716771 1556 dbSNP
rs556665326 1560 dbSNP
rs201058220 1561 dbSNP
rs1233838757 1563 dbSNP
rs201792837 1565 dbSNP
rs200342054 1578 dbSNP
rs1357217166 1588 dbSNP
rs1419431200 1588 dbSNP
rs1461595750 1603 dbSNP
rs201228107 1604 dbSNP
rs1290309423 1627 dbSNP
rs1433850522 1631 dbSNP
rs1028958958 1633 dbSNP
rs199515127 1634 dbSNP
rs1164584152 1637 dbSNP
rs954686552 1641 dbSNP
rs200395120 1642 dbSNP
rs1042324572 1645 dbSNP
rs1168651388 1659 dbSNP
rs575232873 1668 dbSNP
rs902187472 1669 dbSNP
rs201485128 1673 dbSNP
rs35642111 1674 dbSNP
rs346070 1688 dbSNP
rs200822677 1705 dbSNP
rs960468162 1707 dbSNP
rs967518537 1712 dbSNP
rs201669000 1714 dbSNP
rs199590596 1716 dbSNP
rs1023479543 1717 dbSNP
rs1336891487 1731 dbSNP
rs962837460 1738 dbSNP
rs979312126 1742 dbSNP
rs200703432 1761 dbSNP
rs201881416 1769 dbSNP
rs1307645301 1778 dbSNP
rs1297077149 1790 dbSNP
rs199837566 1791 dbSNP
rs1369700598 1797 dbSNP
rs974027322 1797 dbSNP
rs560990025 1799 dbSNP
rs750176836 1800 dbSNP
rs1325684024 1805 dbSNP
rs1442034893 1812 dbSNP
rs1397113979 1816 dbSNP
rs1296999302 1828 dbSNP
rs564342884 1830 dbSNP
rs937552576 1839 dbSNP
rs1373733025 1849 dbSNP
rs1329444761 1864 dbSNP
rs951300327 1870 dbSNP
rs991711709 1872 dbSNP
rs1394654315 1875 dbSNP
rs1339749269 1876 dbSNP
rs1469685699 1877 dbSNP
rs1412869102 1884 dbSNP
rs1195222083 1887 dbSNP
rs755987559 1888 dbSNP
rs1480883413 1892 dbSNP
rs986789724 1895 dbSNP
rs201098467 1896 dbSNP
rs1356196858 1902 dbSNP
rs1350105644 1910 dbSNP
rs912549859 1913 dbSNP
rs201711999 1915 dbSNP
rs1218221154 1919 dbSNP
rs200099748 1922 dbSNP
rs1303754649 1930 dbSNP
rs1235998032 1931 dbSNP
rs1373732537 1942 dbSNP
rs1305236652 1947 dbSNP
rs1391328558 1949 dbSNP
rs1397787591 1951 dbSNP
rs1249870936 1953 dbSNP
rs766337808 1966 dbSNP
rs917531654 1969 dbSNP
rs1374899452 1975 dbSNP
rs1174574429 1981 dbSNP
rs183222491 1989 dbSNP
rs201626645 1995 dbSNP
rs947506707 1998 dbSNP
rs879005441 2000 dbSNP
rs1278376438 2003 dbSNP
rs200254475 2003 dbSNP
rs200912406 2004 dbSNP
rs367743532 2008 dbSNP
rs202236959 2009 dbSNP
rs1190726007 2010 dbSNP
rs143010496 2015 dbSNP
rs76210065 2016 dbSNP
rs1198637972 2018 dbSNP
rs1485081704 2020 dbSNP
rs1280413464 2023 dbSNP
rs1212647587 2027 dbSNP
rs1475272799 2029 dbSNP
rs199583057 2030 dbSNP
rs1238720233 2031 dbSNP
rs1371045183 2038 dbSNP
rs1336705279 2049 dbSNP
rs200399292 2051 dbSNP
rs1413473349 2053 dbSNP
rs1168219252 2055 dbSNP
rs996731784 2057 dbSNP
rs1051006538 2058 dbSNP
rs1432727681 2059 dbSNP
rs1157800882 2073 dbSNP
rs141166041 2075 dbSNP
rs752678930 2079 dbSNP
rs891071632 2090 dbSNP
rs1376110194 2097 dbSNP
rs201552760 2099 dbSNP
rs1185801407 2105 dbSNP
rs1012015544 2113 dbSNP
rs1008890808 2114 dbSNP
rs1023765336 2120 dbSNP
rs1020299159 2126 dbSNP
rs1399545672 2132 dbSNP
rs199558620 2138 dbSNP
rs1487118116 2151 dbSNP
rs200614715 2152 dbSNP
rs201687588 2158 dbSNP
rs1328363091 2159 dbSNP
rs1228433870 2165 dbSNP
rs540403721 2174 dbSNP
rs1283181613 2175 dbSNP
rs199689799 2183 dbSNP
rs200832271 2193 dbSNP
rs201801764 2195 dbSNP
rs995787217 2199 dbSNP
rs1274579411 2207 dbSNP
rs1351936067 2214 dbSNP
rs1262854159 2221 dbSNP
rs1025415556 2233 dbSNP
rs967844516 2235 dbSNP
rs199988950 2237 dbSNP
rs200946955 2247 dbSNP
rs1416642696 2251 dbSNP
rs1033563157 2252 dbSNP
rs201601657 2253 dbSNP
rs1317952914 2264 dbSNP
rs776161483 2278 dbSNP
rs199916790 2299 dbSNP
rs1019591757 2302 dbSNP
rs200763325 2303 dbSNP
rs202004376 2304 dbSNP
rs1166983290 2311 dbSNP
rs185354591 2316 dbSNP
rs201286950 2317 dbSNP
rs202169608 2322 dbSNP
rs200302101 2326 dbSNP
rs1193529406 2329 dbSNP
rs567390214 2330 dbSNP
rs201434774 2335 dbSNP
rs1212163075 2344 dbSNP
rs202115360 2348 dbSNP
rs924759866 2350 dbSNP
rs1334787594 2352 dbSNP
rs73011775 2366 dbSNP
rs201402357 2368 dbSNP
rs552730801 2370 dbSNP
rs199576596 2376 dbSNP
rs1337607020 2377 dbSNP
rs1269659405 2384 dbSNP
rs200924506 2385 dbSNP
rs182475741 2386 dbSNP
rs1395675199 2388 dbSNP
rs3732941 2389 dbSNP
rs1439963268 2398 dbSNP
rs1287121756 2405 dbSNP
rs1394907742 2410 dbSNP
rs200560751 2417 dbSNP
rs1044735305 2418 dbSNP
rs1408131464 2421 dbSNP
rs898264802 2422 dbSNP
rs995256461 2427 dbSNP
rs201449892 2436 dbSNP
rs200042127 2438 dbSNP
rs200826879 2441 dbSNP
rs575450467 2444 dbSNP
rs1008101785 2445 dbSNP
rs1019457755 2446 dbSNP
rs201909484 2449 dbSNP
rs1224500654 2455 dbSNP
rs1237569752 2471 dbSNP
rs199985175 2472 dbSNP
rs1196407373 2474 dbSNP
rs1021608739 2475 dbSNP
rs1341534889 2480 dbSNP
rs969236793 2485 dbSNP
rs554283464 2486 dbSNP
rs1301578650 2489 dbSNP
rs201288275 2493 dbSNP
rs1371536116 2497 dbSNP
rs202154001 2499 dbSNP
rs775603160 2500 dbSNP
rs200110369 2501 dbSNP
rs200865775 2508 dbSNP
rs960155285 2520 dbSNP
rs760687761 2521 dbSNP
rs1172696739 2530 dbSNP
rs916189824 2542 dbSNP
rs1252061248 2544 dbSNP
rs202019438 2546 dbSNP
rs200325629 2547 dbSNP
rs1469073393 2552 dbSNP
rs958803534 2555 dbSNP
rs201613799 2560 dbSNP
rs188400555 2561 dbSNP
rs202166220 2564 dbSNP
rs200400584 2568 dbSNP
rs1278270034 2569 dbSNP
rs201663066 2578 dbSNP
rs1024439493 2590 dbSNP
rs1253397763 2592 dbSNP
rs199737303 2593 dbSNP
rs1372311466 2600 dbSNP
rs571052541 2601 dbSNP
rs931085565 2611 dbSNP
rs73123314 2612 dbSNP
rs201026201 2619 dbSNP
rs908169484 2622 dbSNP
rs1311680637 2626 dbSNP
rs192579904 2627 dbSNP
rs145344183 2628 dbSNP
rs1399362517 2629 dbSNP
rs1326953287 2641 dbSNP
rs1373088254 2646 dbSNP
rs1008050964 2657 dbSNP
rs1473826731 2658 dbSNP
rs563968963 2667 dbSNP
rs1187267046 2668 dbSNP
rs1309840085 2675 dbSNP
rs1318196931 2688 dbSNP
rs879803009 2689 dbSNP
rs182951279 2692 dbSNP
rs996760518 2701 dbSNP
rs200921285 2713 dbSNP
rs1284675647 2722 dbSNP
rs762950246 2729 dbSNP
rs912404456 2742 dbSNP
rs945244329 2743 dbSNP
rs1239213501 2749 dbSNP
rs1042301396 2750 dbSNP
rs1272005897 2751 dbSNP
rs968724083 2753 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gugugaguacaccgGGGGUcgu 5'
                        :||||   
Target 5' --ucaagccuauaaUCCCA--- 3'
 		1 - 17
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000397056.1 | 3UTR | UCAAGCCUAUAAUCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000397056.1 | 3UTR | UCAAGCCUAUAAUCCCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
321 hsa-miR-4731-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT081189 MIDN midnolin 2 4
MIRT113400 RAB5B RAB5B, member RAS oncogene family 2 8
MIRT153789 NCOA3 nuclear receptor coactivator 3 2 2
MIRT169837 GIGYF1 GRB10 interacting GYF protein 1 2 6
MIRT441540 CHD7 chromodomain helicase DNA binding protein 7 2 2
MIRT443470 ACPP acid phosphatase, prostate 2 2
MIRT443851 RGS6 regulator of G protein signaling 6 2 2
MIRT444416 EMC1 ER membrane protein complex subunit 1 2 2
MIRT444838 PDE6D phosphodiesterase 6D 2 2
MIRT444997 HRH1 histamine receptor H1 2 2
MIRT446371 THSD4 thrombospondin type 1 domain containing 4 2 2
MIRT449696 SLC10A3 solute carrier family 10 member 3 2 2
MIRT451068 PNMAL2 paraneoplastic Ma antigen family member 8B 2 2
MIRT451915 ILK integrin linked kinase 2 2
MIRT452990 CABP4 calcium binding protein 4 2 2
MIRT458034 MRPL12 mitochondrial ribosomal protein L12 2 2
MIRT460780 VPS37B VPS37B, ESCRT-I subunit 2 2
MIRT463916 WNT3 Wnt family member 3 2 2
MIRT465880 TMEM43 transmembrane protein 43 2 4
MIRT466317 THRA thyroid hormone receptor, alpha 2 2
MIRT468696 SEC22C SEC22 homolog C, vesicle trafficking protein 2 4
MIRT469129 RNF126 ring finger protein 126 2 2
MIRT472239 NFIC nuclear factor I C 2 2
MIRT479647 CD4 CD4 molecule 2 2
MIRT479734 CCND1 cyclin D1 2 6
MIRT479837 CCDC86 coiled-coil domain containing 86 2 2
MIRT483408 SPATA6 spermatogenesis associated 6 2 4
MIRT485972 RTBDN retbindin 2 2
MIRT486614 METTL6 methyltransferase like 6 2 2
MIRT487814 PER3 period circadian clock 3 2 2
MIRT488586 ST7L suppression of tumorigenicity 7 like 2 2
MIRT488673 WWP2 WW domain containing E3 ubiquitin protein ligase 2 2 2
MIRT490783 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491356 PEX6 peroxisomal biogenesis factor 6 2 2
MIRT493539 IGDCC3 immunoglobulin superfamily DCC subclass member 3 2 4
MIRT493894 FAM43A family with sequence similarity 43 member A 2 4
MIRT494664 ARL8A ADP ribosylation factor like GTPase 8A 2 2
MIRT506353 NUP50 nucleoporin 50 2 6
MIRT508553 CEP72 centrosomal protein 72 2 4
MIRT508722 ZNF682 zinc finger protein 682 2 4
MIRT508811 GPR155 G protein-coupled receptor 155 2 2
MIRT509070 MED18 mediator complex subunit 18 2 2
MIRT509107 BMP8B bone morphogenetic protein 8b 2 6
MIRT509198 TTF2 transcription termination factor 2 2 2
MIRT509308 ZNF460 zinc finger protein 460 2 2
MIRT509341 ZNF708 zinc finger protein 708 2 2
MIRT509381 ASH2L ASH2 like histone lysine methyltransferase complex subunit 2 6
MIRT509722 EFCAB11 EF-hand calcium binding domain 11 2 4
MIRT510008 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 2 4
MIRT510067 C12orf49 chromosome 12 open reading frame 49 2 6
MIRT510179 BCL2L2 BCL2 like 2 2 2
MIRT511300 KIAA1551 KIAA1551 2 2
MIRT511531 HMGB1 high mobility group box 1 2 6
MIRT512018 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT514112 SERF2 small EDRK-rich factor 2 2 2
MIRT514296 FXYD5 FXYD domain containing ion transport regulator 5 2 6
MIRT514460 FANCA Fanconi anemia complementation group A 2 2
MIRT515183 CRCP CGRP receptor component 2 2
MIRT515290 C4orf3 chromosome 4 open reading frame 3 2 2
MIRT515528 QRFPR pyroglutamylated RFamide peptide receptor 2 4
MIRT515553 TMEM134 transmembrane protein 134 2 2
MIRT515619 ISY1 ISY1 splicing factor homolog 2 2
MIRT515707 ZNF321P zinc finger protein 321, pseudogene 2 2
MIRT515988 SLC30A2 solute carrier family 30 member 2 2 2
MIRT516179 POLR3A RNA polymerase III subunit A 2 4
MIRT516247 BCAS4 breast carcinoma amplified sequence 4 2 4
MIRT516505 SYTL3 synaptotagmin like 3 2 4
MIRT516586 SPHAR S-phase response (cyclin related) 2 2
MIRT516697 ODF2L outer dense fiber of sperm tails 2 like 2 2
MIRT516779 PTRF caveolae associated protein 1 2 4
MIRT516998 COX19 COX19, cytochrome c oxidase assembly factor 2 2
MIRT517094 CCDC30 coiled-coil domain containing 30 2 4
MIRT517163 SLC28A1 solute carrier family 28 member 1 2 2
MIRT517234 PRIM1 DNA primase subunit 1 2 4
MIRT517602 SAV1 salvador family WW domain containing protein 1 2 2
MIRT517631 ZNF491 zinc finger protein 491 2 2
MIRT517734 C1orf220 chromosome 1 open reading frame 220 2 2
MIRT517748 DIS3L DIS3 like exosome 3'-5' exoribonuclease 2 4
MIRT518005 RPL4 ribosomal protein L4 2 4
MIRT518184 SLC27A4 solute carrier family 27 member 4 2 2
MIRT518266 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT518448 KIF6 kinesin family member 6 2 2
MIRT518679 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 2 2
MIRT518834 NEK8 NIMA related kinase 8 2 2
MIRT519142 C2orf49 chromosome 2 open reading frame 49 2 2
MIRT519250 PLA2G12A phospholipase A2 group XIIA 2 2
MIRT519369 RBM28 RNA binding motif protein 28 2 2
MIRT519410 KCNA7 potassium voltage-gated channel subfamily A member 7 2 4
MIRT519495 MAPK13 mitogen-activated protein kinase 13 2 2
MIRT520061 YIPF4 Yip1 domain family member 4 2 2
MIRT520132 WSB1 WD repeat and SOCS box containing 1 2 2
MIRT520289 UBXN2A UBX domain protein 2A 2 2
MIRT520433 TTLL12 tubulin tyrosine ligase like 12 2 2
MIRT520553 TNRC6B trinucleotide repeat containing 6B 2 2
MIRT520764 TCF23 transcription factor 23 2 2
MIRT520806 TAOK1 TAO kinase 1 2 2
MIRT520874 STX17 syntaxin 17 2 2
MIRT520986 SOCS5 suppressor of cytokine signaling 5 2 2
MIRT521077 SLC25A15 solute carrier family 25 member 15 2 2
MIRT521165 SDHAF1 succinate dehydrogenase complex assembly factor 1 2 2
MIRT521213 SBNO1 strawberry notch homolog 1 2 2
MIRT521485 RAB4A RAB4A, member RAS oncogene family 2 2
MIRT521638 PROSC pyridoxal phosphate binding protein 2 2
MIRT522151 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT522300 NKAP NFKB activating protein 2 2
MIRT522445 MOB4 MOB family member 4, phocein 2 2
MIRT522493 MFN1 mitofusin 1 2 2
MIRT522877 KHSRP KH-type splicing regulatory protein 2 2
MIRT523059 HYPK huntingtin interacting protein K 2 2
MIRT523095 HSPE1-MOB4 HSPE1-MOB4 readthrough 2 2
MIRT523577 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 2 2
MIRT523634 FOXK1 forkhead box K1 2 4
MIRT524231 DCTN6 dynactin subunit 6 2 2
MIRT524266 CYCS cytochrome c, somatic 2 2
MIRT524367 CREB1 cAMP responsive element binding protein 1 2 2
MIRT524430 CNKSR3 CNKSR family member 3 2 2
MIRT524557 CASP16 caspase 16, pseudogene 2 2
MIRT524585 CALCOCO2 calcium binding and coiled-coil domain 2 2 2
MIRT524955 AGO3 argonaute 3, RISC catalytic component 2 2
MIRT531856 MAP2K2 mitogen-activated protein kinase kinase 2 2 2
MIRT541995 MYO1C myosin IC 2 2
MIRT542247 HSPA4L heat shock protein family A (Hsp70) member 4 like 2 2
MIRT542601 YOD1 YOD1 deubiquitinase 2 2
MIRT545238 ZFAND3 zinc finger AN1-type containing 3 2 2
MIRT552183 F2RL3 F2R like thrombin or trypsin receptor 3 2 2
MIRT553520 TMEM245 transmembrane protein 245 2 2
MIRT554430 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT559138 BTF3L4 basic transcription factor 3 like 4 2 4
MIRT564062 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT564857 ZBED3 zinc finger BED-type containing 3 2 2
MIRT565382 TGOLN2 trans-golgi network protein 2 2 2
MIRT568952 RUNX3 runt related transcription factor 3 2 2
MIRT568983 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569255 FAM129B family with sequence similarity 129 member B 2 2
MIRT570199 RAP1GAP2 RAP1 GTPase activating protein 2 2 2
MIRT570913 PPFIA4 PTPRF interacting protein alpha 4 2 2
MIRT571084 ZNF670 zinc finger protein 670 2 2
MIRT571456 YKT6 YKT6 v-SNARE homolog 2 2
MIRT574233 DMRT2 doublesex and mab-3 related transcription factor 2 2 2
MIRT608730 MYH9 myosin heavy chain 9 2 2
MIRT610109 IL17REL interleukin 17 receptor E like 2 2
MIRT614235 WDR53 WD repeat domain 53 2 4
MIRT626199 PNRC1 proline rich nuclear receptor coactivator 1 2 4
MIRT626325 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing 2 2
MIRT626381 BBS1 Bardet-Biedl syndrome 1 2 2
MIRT627164 ZNF48 zinc finger protein 48 2 2
MIRT633098 CBX5 chromobox 5 2 2
MIRT642246 PAK4 p21 (RAC1) activated kinase 4 2 2
MIRT643882 IMP4 IMP4, U3 small nucleolar ribonucleoprotein 2 2
MIRT644837 SEC14L4 SEC14 like lipid binding 4 2 2
MIRT645189 POLR3F RNA polymerase III subunit F 2 4
MIRT645781 FFAR4 free fatty acid receptor 4 2 2
MIRT647144 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT647273 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT648743 FAM46B family with sequence similarity 46 member B 2 2
MIRT649204 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT649859 WDR12 WD repeat domain 12 2 2
MIRT650814 PNPLA3 patatin like phospholipase domain containing 3 2 2
MIRT659537 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 2 2
MIRT664212 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated 2 2
MIRT664373 CYB5A cytochrome b5 type A 2 2
MIRT667395 MOB1B MOB kinase activator 1B 2 2
MIRT669465 ATL3 atlastin GTPase 3 2 2
MIRT670556 SHISA2 shisa family member 2 2 2
MIRT673104 MFSD2A major facilitator superfamily domain containing 2A 2 2
MIRT679350 LRG1 leucine rich alpha-2-glycoprotein 1 2 2
MIRT680354 GATAD1 GATA zinc finger domain containing 1 2 4
MIRT680680 ZNF785 zinc finger protein 785 2 2
MIRT680759 WDR73 WD repeat domain 73 2 2
MIRT681392 RMND1 required for meiotic nuclear division 1 homolog 2 2
MIRT681687 ABI2 abl interactor 2 2 2
MIRT681817 N4BP2L2 NEDD4 binding protein 2 like 2 2 2
MIRT682314 RAB42 RAB42, member RAS oncogene family 2 2
MIRT683308 C19orf40 Fanconi anemia core complex associated protein 24 1 1
MIRT683374 ESR2 estrogen receptor 2 2 2
MIRT683466 CCS copper chaperone for superoxide dismutase 2 2
MIRT683481 ZNF7 zinc finger protein 7 2 2
MIRT683514 C11orf54 chromosome 11 open reading frame 54 2 2
MIRT683860 OCIAD1 OCIA domain containing 1 2 2
MIRT683926 SLC43A3 solute carrier family 43 member 3 2 2
MIRT683935 MYLK3 myosin light chain kinase 3 2 2
MIRT684068 TLR7 toll like receptor 7 2 2
MIRT684120 CEP104 centrosomal protein 104 2 2
MIRT684192 MSRB2 methionine sulfoxide reductase B2 2 2
MIRT684343 IFIT3 interferon induced protein with tetratricopeptide repeats 3 2 2
MIRT684480 GPR137B G protein-coupled receptor 137B 2 2
MIRT684565 ORAI2 ORAI calcium release-activated calcium modulator 2 2 2
MIRT684608 GTF2IRD2B GTF2I repeat domain containing 2B 2 2
MIRT684643 PDE4C phosphodiesterase 4C 2 2
MIRT684700 LRRD1 leucine rich repeats and death domain containing 1 2 2
MIRT684735 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 2 2
MIRT684911 CD28 CD28 molecule 2 2
MIRT685024 MRI1 methylthioribose-1-phosphate isomerase 1 2 2
MIRT685186 DCTN5 dynactin subunit 5 2 2
MIRT685234 F2RL1 F2R like trypsin receptor 1 2 2
MIRT685303 ASB16 ankyrin repeat and SOCS box containing 16 2 2
MIRT685345 CCL5 C-C motif chemokine ligand 5 2 2
MIRT685553 TXK TXK tyrosine kinase 2 2
MIRT685570 KCNK6 potassium two pore domain channel subfamily K member 6 2 2
MIRT685651 C11orf1 chromosome 11 open reading frame 1 2 2
MIRT685697 BHMT2 betaine--homocysteine S-methyltransferase 2 2 2
MIRT685731 C12orf65 chromosome 12 open reading frame 65 2 2
MIRT685873 RTN2 reticulon 2 2 2
MIRT685937 PTGIS prostaglandin I2 synthase 2 2
MIRT686095 TNIP3 TNFAIP3 interacting protein 3 2 2
MIRT686147 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 2 2
MIRT686271 WWC1 WW and C2 domain containing 1 2 2
MIRT686307 VPS53 VPS53, GARP complex subunit 2 2
MIRT686349 USP15 ubiquitin specific peptidase 15 2 2
MIRT686377 UBE2V2 ubiquitin conjugating enzyme E2 V2 2 2
MIRT686431 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT686477 TRIOBP TRIO and F-actin binding protein 2 2
MIRT686515 TRAF3IP2 TRAF3 interacting protein 2 2 2
MIRT686682 TIMM10 translocase of inner mitochondrial membrane 10 2 2
MIRT686818 SLC7A11 solute carrier family 7 member 11 2 2
MIRT686904 SGTB small glutamine rich tetratricopeptide repeat containing beta 2 2
MIRT686974 SERINC1 serine incorporator 1 2 2
MIRT687035 RNF115 ring finger protein 115 2 2
MIRT687067 RABGAP1L RAB GTPase activating protein 1 like 2 2
MIRT687240 PDHB pyruvate dehydrogenase E1 beta subunit 2 2
MIRT687494 NFATC2IP nuclear factor of activated T-cells 2 interacting protein 2 2
MIRT687591 MANEAL mannosidase endo-alpha like 2 2
MIRT687635 LRIF1 ligand dependent nuclear receptor interacting factor 1 2 2
MIRT687673 LMBR1L limb development membrane protein 1 like 2 2
MIRT687849 ISCA2 iron-sulfur cluster assembly 2 2 2
MIRT687918 HOOK3 hook microtubule tethering protein 3 2 2
MIRT687974 GTF2IRD2 GTF2I repeat domain containing 2 2 2
MIRT688105 GK5 glycerol kinase 5 (putative) 2 2
MIRT688115 GEMIN8 gem nuclear organelle associated protein 8 2 2
MIRT688148 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT688263 FAM213A family with sequence similarity 213 member A 2 2
MIRT688456 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT688497 DDI2 DNA damage inducible 1 homolog 2 2 2
MIRT688558 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT688668 CPT1A carnitine palmitoyltransferase 1A 2 2
MIRT689057 AGMAT agmatinase 2 2
MIRT689075 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT689108 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT689161 ZNF665 zinc finger protein 665 2 2
MIRT689788 GTF2H3 general transcription factor IIH subunit 3 2 2
MIRT689835 HIST1H2BJ histone cluster 1 H2B family member j 2 2
MIRT690061 MBD1 methyl-CpG binding domain protein 1 2 2
MIRT690727 IRAK4 interleukin 1 receptor associated kinase 4 2 2
MIRT690974 ZNF578 zinc finger protein 578 2 2
MIRT691066 NUGGC nuclear GTPase, germinal center associated 2 2
MIRT691315 KIAA1841 KIAA1841 2 2
MIRT691485 FOXRED2 FAD dependent oxidoreductase domain containing 2 2 2
MIRT691568 CCDC125 coiled-coil domain containing 125 2 2
MIRT691601 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT692059 ACOT9 acyl-CoA thioesterase 9 2 2
MIRT692099 CXorf38 chromosome X open reading frame 38 2 4
MIRT692311 RFK riboflavin kinase 2 2
MIRT692371 LY6G5B lymphocyte antigen 6 family member G5B 2 2
MIRT692432 METTL8 methyltransferase like 8 2 2
MIRT692468 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 2 2
MIRT692532 PARD3 par-3 family cell polarity regulator 2 2
MIRT692594 GDF5OS growth differentiation factor 5 opposite strand 2 2
MIRT692776 SYNPO2L synaptopodin 2 like 2 2
MIRT692810 C1orf50 chromosome 1 open reading frame 50 2 2
MIRT692868 RBM41 RNA binding motif protein 41 2 2
MIRT693131 THEM4 thioesterase superfamily member 4 2 2
MIRT693313 TRIM58 tripartite motif containing 58 2 2
MIRT693497 MOB3A MOB kinase activator 3A 2 2
MIRT694101 ZNF446 zinc finger protein 446 2 2
MIRT694173 POLM DNA polymerase mu 2 2
MIRT694186 ZNF347 zinc finger protein 347 2 2
MIRT694444 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 2
MIRT694653 C14orf119 chromosome 14 open reading frame 119 2 2
MIRT694802 STX4 syntaxin 4 2 2
MIRT694922 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B 2 2
MIRT695174 SLC25A33 solute carrier family 25 member 33 2 2
MIRT695305 PIGO phosphatidylinositol glycan anchor biosynthesis class O 2 4
MIRT695656 MAN2B2 mannosidase alpha class 2B member 2 2 2
MIRT695823 ABCG8 ATP binding cassette subfamily G member 8 2 2
MIRT695964 EIF2B2 eukaryotic translation initiation factor 2B subunit beta 2 2
MIRT696174 GNB5 G protein subunit beta 5 2 2
MIRT696433 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT696610 CRIPT CXXC repeat containing interactor of PDZ3 domain 2 2
MIRT696854 UBOX5 U-box domain containing 5 2 2
MIRT696896 C14orf105 coiled-coil domain containing 198 2 2
MIRT697382 ZMAT3 zinc finger matrin-type 3 2 2
MIRT697529 ZBTB46 zinc finger and BTB domain containing 46 2 2
MIRT697973 TSPAN6 tetraspanin 6 2 2
MIRT698325 TMEM127 transmembrane protein 127 2 2
MIRT698915 SPEM1 spermatid maturation 1 2 2
MIRT699257 SLC6A4 solute carrier family 6 member 4 2 2
MIRT699311 SLC35F5 solute carrier family 35 member F5 2 4
MIRT699624 SH3BP5 SH3 domain binding protein 5 2 2
MIRT699688 SF3B3 splicing factor 3b subunit 3 2 2
MIRT700040 RPL14 ribosomal protein L14 2 2
MIRT700095 RNF19B ring finger protein 19B 2 2
MIRT700498 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 2
MIRT700747 PLAA phospholipase A2 activating protein 2 2
MIRT701103 PAPD5 poly(A) RNA polymerase D5, non-canonical 2 2
MIRT701568 MYPN myopalladin 2 2
MIRT701692 MYADM myeloid associated differentiation marker 2 2
MIRT701815 MRPL37 mitochondrial ribosomal protein L37 2 2
MIRT702435 KIAA1549 KIAA1549 2 2
MIRT702518 KCND3 potassium voltage-gated channel subfamily D member 3 2 2
MIRT702954 HIP1 huntingtin interacting protein 1 2 2
MIRT703079 GPRIN3 GPRIN family member 3 2 2
MIRT704106 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT704138 DNAL1 dynein axonemal light chain 1 2 2
MIRT704187 LDHD lactate dehydrogenase D 2 2
MIRT704754 CDKN2AIPNL CDKN2A interacting protein N-terminal like 2 2
MIRT705075 C4orf29 abhydrolase domain containing 18 2 2
MIRT705342 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT706274 SLC35F6 solute carrier family 35 member F6 2 2
MIRT706397 HAS2 hyaluronan synthase 2 2 2
MIRT706431 LIAS lipoic acid synthetase 2 2
MIRT706506 MTMR9 myotubularin related protein 9 2 2
MIRT707586 PCNXL2 pecanex homolog 2 2 2
MIRT708361 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 2
MIRT708444 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 2 2
MIRT709915 GRIK3 glutamate ionotropic receptor kainate type subunit 3 2 2
MIRT712607 BHLHA15 basic helix-loop-helix family member a15 2 2
MIRT716540 GOLGA2 golgin A2 2 2
MIRT721623 VDR vitamin D receptor 2 2
MIRT724887 MVK mevalonate kinase 2 2
MIRT725257 PARVB parvin beta 2 2
MIRT755885 RPLP0 ribosomal protein lateral stalk subunit P0 3 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4731 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4731 Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-mir-4731 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-4731-5p Anthracycline 30323 NSC82151 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Fluorouracil 3385 NSC19893 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Cyclophosphamide 2907 NSC26271 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Methotrexate 126941 NSC740 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Taxol 36314 NSC125973 approved resistant High Breast Cancer tissue
hsa-miR-4731-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-4731-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (100 ng/ml)
hsa-miR-4731-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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