miRTarBase - #MIRT445073


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pre-miRNA Information
pre-miRNA hsa-mir-100   
Genomic Coordinates chr11: 122152229 - 122152308
Synonyms MIRN100, miR-100, MIR100
Description Homo sapiens miR-100 stem-loop
Comment This sequence is localised to chromosome 11 and was named mir-100-11 in reference .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-100-3p
Sequence 48| CAAGCUUGUAUCUAUAGGUAUG |69
Evidence Experimental
Experiments Cloned
Editing Events in miRNAs
Modification Type Position on miR Chromosome DNA Strand Genomic Position (hg38) List of PMIDs Variant details
A-to-I 3 11 - 122152259 29233923 MiREDiBase
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs773933142 2 dbSNP
rs1321972926 4 dbSNP
rs770590792 7 dbSNP
rs1388368183 9 dbSNP
rs909526986 14 dbSNP
rs749039221 15 dbSNP
rs530428149 17 dbSNP
rs775253529 17 dbSNP
Putative Targets

miRNA Expression profile
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol C16orf87   
Synonyms -
Description chromosome 16 open reading frame 87
Transcript NM_001001436   
Expression
Putative miRNA Targets on C16orf87
3'UTR of C16orf87
(miRNA target sites are highlighted)		 
>C16orf87|NM_001001436|3'UTR
   1 TACTTGTTTGCAAAATCTGCTGAAACTTCTGTCAGGATAACATCAGCAAATTCTCAAACAGTTATGGACTCTCAGGAGCA
  81 TTCTGACTGCATCAATAAGGGCCATCGATTGTTTCTTTCTCGCCTGTCGTTTAGCCTGTGCCACACTTCGGGAGCAAAGC
 161 TGTGTAGGCTTGGACTGTTCTGGGATTTCCTTGTTTACCAAGGAGTATTGTCAGTGTTTTGTGTTTGGGATATAAGTAAG
 241 TGTATTTGCCAACAACAAAAAAAAACCAACAAAAATGCTGGATGGATGTTAAAGGATAAAAAGTGATGGGGTATGGGGTA
 321 GGTATGAAAACTAGGGTAATAAGATGCTTGATTGTTTTCAGGTTTGCCACCAGAGATGCAATATTTTAAATACTGTCAGA
 401 AAGAGTGATTTTTAAAAATATATATTTCAGATTTTCAGTGCTAACAGATTGCATATATACAGTTCATTTACTTTTATTAA
 481 ATTGGCAATCGATATTTTATTGAATGGGGAATTAAGAATATAAACTGTAAATTTTGTCTTAAATTGATTTTTTTTCTTGG
 561 CCTTTATTTTTATTACTTAAGGTATGAGTTATATTTTAGGAGATACTTTCTAGACAGTTTGAAGTTTGGGTGCTATATGA
 641 AGAAAAACATTTAATGATATACTCAGATATAAACACCTTGTTTTCTTGAATGTAATTTATTTATTAGCTAAAAAAAAAAA
 721 ACAAACTGCTCTCAAGATGGTGCCTGTTAACCTAAACATGAAATATATTTATTACATGCAAAATATTTCTTAGCCACTTT
 801 TAAGCAGTAATGTTTTATCTGAATGGATATTTGTTTCTATATCCTGATAATTATTTAAATTGTTACTTTCAATCTGGAAG
 881 AAAAAATAAACCTTAATATTGAAACTAAGTAGATTAAATAGTGTGATAAAAGTTTTTTGTTCTGGTGAAGTTTGTGAAAT
 961 ATATTTAAATTCTTAATTTTTCTAGTGTTAAGTCATAATCGTTTATAGTTGATTTATATTAAATGCTTTTGCATTTTGGC
1041 ATATCAATTTAATGATTAACATATTCAAACTTGGTAATCACTCCCCTTATTTTCAGTCGCTCTTCCCCCAATCTGTTTAG
1121 AAATCCTTTTAAAGCCTTCTTACAGAAGATAGTCATCAGTTAGATTTAGCCCCCTTTTAAGAGAATCTCCCTTTCAATTT
1201 TAGCCGTAACATTATCAATTTCAGACTTCATCCTGCATCTCCCATCACCTCCTCAAAGAAAAAAGGTCAACATTTTTTCC
1281 TACTTTATTTAAATGGTAACCAGCAGAGGGAGCTTAAGAGGTACTCTAGATAGGATAAAGAATTTTCCTAAGGATTCCTT
1361 TTCCTTTAATCCCTGTATCTATCTGCAGGTACTACTGCAACTATTTTGTATGCATTTTATTTATTTATTTAGGAGACAGA
1441 GTCTTGCTCGGTCGCCCAGGCTGGAGTGCAGTGGCACTGTCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGAT
1521 TCTTATGCCTCAGCCTCCTGAGTAGCTGTGACTAGAGGCGTGCGCCACCACGCCTGGCTGTTTTTTTTTTTGTATTTTTT
1601 AGTACAGATGGGGTCTCAGCATGTTGGCCAGGCTGGTCTCAAATTCCTGGCCTTAGGTGATCTGCCCGCCTTGGCCTCCC
1681 AAAGTGCTGGGATTACAGGCATGAGCCACTGCACTCAGCCTTGTGTGCGTTTTAGAGTCTTAACTAGTAGTTTCCCCAAT
1761 AATGTAATGTGATTTTATCTTTGAAACATACTGTAAGGAAACTTTTGATTTTAAGTAAAAAAGCTTAAAAATGATTAATA
1841 TCTAAAAATGCTTGTATACATATATATGTCCTCAGAAAAAGCAAGAACAGCTTGTGGAATAAGCACGTCTTTAAGGAATT
1921 ATCGATGTCAGAGTCTATCCATTTAAAGCTGAAGACCATTACAGGAAAGTCATGTTAAAATATTCATTGGATATGGTAAA
2001 GGAGGTACTGGTGGCTGGGCTGGAGCTTGCCGTATAGAAAAGTAATTACTTCAGATCTCATAATGTTAAATTATTGGCTT
2081 ATTTAAAAATTTCCGTGGCAGAGAGGCAAATTAGGTTTCCTCTGTGACATAACCTATTTAACCAATTTTTCAAAAAATTG
2161 TACTCTATGAGCTTTCTTGTTATAAAGCTAAAAAATTTAATTTGTCTAGGCATGTTGTAATGGTCCCAGAAAATATTACT
2241 TTGTCACTGGTGTCAGAGAAACCTCTGTCATCAGCAGATGTCCTAAGAGTATAATTATAGTTCTTTACTTAATCCAAAAT
2321 TTGTTCTGCTCTGATATCTATAAATGATATGATTATTCAAAATACCTTGAAATGATTCCACAATTAGATTAGGTCTGTTG
2401 AAGATAACTTATTCTTAAATATGAGTAAGATTAAATAAAAGTAGTTTGAGAGTTGTTACTCCCTGCCTCAACTCCATGGT
2481 ATTCCAAAATGTTTTTGTGGGCACTTTAATACTTGTAGTTTGATTTTGTTTGTTAGTTTTAGAAATGAACATTTCTTAGA
2561 TTTTCATGGGTATTTTTTGGCTGTATTTAAATGTAAATGATATAAAAGTAAGGGAAATTGTGCAAATTATTTCTTGTGTA
2641 GTAATCAGTGGAAGTGATCAAACAGCTTGAAGCAGTTTATGATGAGAAAATTTAAAATTGCAAATGACCTGAAAATTTAG
2721 CCAGTCTATTCTTATTTCTTTAAATTTCAGAAATACTTAAGAAAAAAAAAAAAAAGGTCAGTATGACCTCTGAGTTGCTT
2801 CCTAAAAGTAATCAGATAGTGTTCTCCCTCAGATAAGATTTCAAATTGAAAAGTATTTGACTTCTTTAACTCTAGTAATT
2881 GCACTTGATTCTCTAATTCTGATCATTAAAATGACTTGGCAATATTTAATTTTGGCTTGCCTTTCAATCTGCATGTTTGT
2961 CTTAAATTTAGAAAAATTAAGCTCTTTACTTACTTTTATATAAAGTATTAATTGGCCAGGCATGGTGGCTTACACCTGTA
3041 ATCCCAACACTTTGGGAGGCCAAGGCAGGAGAGTTGTTTGAAGCCAGGAGTTTGAGACCAGCCTGGGCAACATGATGAGA
3121 CCGCGTCTCTACAAAAAGTAAAATTAGCTGGGTGTGGTGCTTCCAGCTACTAGGCAGCTGAGGCTAAAGGATCACTTGAG
3201 CCCAGGAGTTCGAGGCTGCAGTGAGTGATGATCTTGCCACTGCACTCCAGCCTGGGAGGCAGAGCAAGAAACACCCTGTG
3281 TGAAAAAAGTATTGAATTTGTTTGATTCCACTTTCAAAATATGCTCTAGATACAGGTAGTCATTCTGCCAAATTGTGTTC
3361 TTCTCTAAAACATTTTGTCCGTCATTCTTTGAAACTCATTCTTAATTATTTCCACTTTACCTTCTAGTTTGGTTTGATGC
3441 CTTATATTCTTGCTAGTTAAAAGCATTTTTTCCCTAGTATTTTCTGTCTTTCTAGCCTTTAAGGCATATTGTTGTTAACA
3521 AATCTCTTATTTAAGTTAATTAAAGTTTTTTCTGTGCAGCTGGGTTTTTTCTTTTACTACATGACAAGCTTCATTTTTAC
3601 ATTTGGAAGTACATGTATATATGTTTATATATTTTTATTCTCAGGATCTATTTTCTAGGGAACTATTTTTTTAAATTATT
3681 CTTTTGTGCTGCCTTAACCCATTTATTATAGTTTGAATATTAGTAGTACTTACTACTCAAAGATTACAACTATACTAATA
3761 ACTATCCTAACATACAAAGCAGACTCTCCAGGATTAAAAGTATGAGACATATAACAGAGTCTGGAATAGAATAATTCTTT
3841 TTACCCCAGTCAAGTATTTGCCTTTTGCATTATTAAGGAATCTGTTTTGTTCTTTTATTGATAATTTCTATATTTTTTTC
3921 TTTGCCTTATTGCACTGGTTGGGACTTTTTGCCTTGATCCAGTTGTAGGGGGGAAACATTCAGTCATTAAGCATTAAATA
4001 ACTTTGTTGTTGTTGTGGGCTTGAAAAAATACCCTTTAGTAGATTGAGGGTAGACTCTTTTATTTCTGCTTGTTGGAAGT
4081 TTTCTGTCAGGAACAGATGTTGAATTTTGTCAGATGCTTTTTCTGCATAATTGATAGGACCTTTTTTCTCCCCTTTAGAA
4161 TGTTCATATGGTGAAACATACTGATAGCTTTTCTTTTCTTTTTTTTTTGACACGGAGTCTCACTCTGTCACCCAGGCTGG
4241 AGTGCAATGGTGCGATCTTGGCTCACTGCACCCTCTGCCTCTTGGGTTCAAGCTTCCCTCACCAGCCTCCCAAGTACCTG
4321 GGTATACAGGTGTGCATCACCATGCCCGGCTAATTTTTGAATTTTTAGTAGAGATAGGTTTTTACCATGTTGGCCAGGCT
4401 GGTCTTCAACTCCTGACTCAGCCTCCCAAAGTGTTGGGATTACAGTCTCGCTCTGTCGCCCAGGCTGGAGGGCAGTGGTG
4481 TGATCTTGGCTCAATGCAACCTTGCAACCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTTAGCCTCCTGAGTAGCTG
4561 GAATTACAGGCGCACGCCACTACACCCAGCTTCTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAAGCT
4641 GGTCTCGAACTCCTGAGCTCCGGTGATCCACCCGCCTTTACAGGCATGAGCCACCGTGCCCGGCTGCATTTCTCTTTTGT
4721 AAGAACCTGCTCTGGTTTATTGATATTTTGCTGTTTTTCTGTTTTAAGTTTCATTAATTTCTGATCTTTAGTATTTTCTC
4801 CTTTCTTTGCTTTGGGCTTATTTGCTCCCTTTTCTAGCTTATTGTGGCGGAAGCTCAGATCATTGATTTTAAAATTTACT
4881 TATTTATTTATTTATTTATTTAATTCAACACTGATCAGAAGGCTTTTTGTGCTTTTCTAAAAAAAGCATTTAATGCTATA
4961 AATTTCCCATTTGCTTTATCTCACAAATTTTATTGTGTTGTAATTTTGTGTTCAATTTAGAATATTCTGATTTTTCTTGG
5041 TATTACTATAATTTTCAAATATTTAGAGTTTTTTTCAGTTATCTTTCTGTTACTGATTGTAATTTATTGTTTTTTAAAAT
5121 TATAGTTCTTTGAATAGTTTTGCAGTATTTGCTCTAGGGATTACTATAAACATACTTCACTTTTTACAGTTCACTTAGAA
5201 GTCAATATTTTACCAGTTCAAGTGGAATGTAGAAAAATCTTACCACTGTTTACATTCCTTTACCCTCTCCCCTTTATGTT
5281 ATAATTTTCTTATAAATCATAAGACTTGGCTGGGCACAGTGGCTCACCTGTAATCCCAGGACTGGGAGGCCGAGGCGAGC
5361 AGATTGCTTAAGTCCAGGAGTTCGAGACCAGCCTGGACAATGTGGTGAAACCCCAACTCTACAAAAAATACACAAAATTA
5441 GCTAGGCGTGGTAGCATGTTCCTGTAGTCCCAGCTACTCAGGAGGCTGAAGTGGGAGGATTACTTGAGCCCAGGAGGCAG
5521 AGGTTGCAGTGAGCCAAGATCACTCCACTCCACTCCAGCCTGAGTGACAGAGCTAGACACTGTGTCTCAAAAAATAAAAA
5601 TAAAAAATAAGACTCATCAGATAATGTATTTTTTCCTTACAACTATCATAGATATTTTTAAGAACCCAAGAGGAAAACAG
5681 TCTATCACATTTACCACAATATTTATCATTTGTATTAATCTTCCTTAATTCTTGATGTTCCAAGTTTACATAGGTATCAG
5761 TCCTTTTCATCTGGAAAATTTCTTTTAGTGCAGGTCTGTTGACATTTAATTCTCTTATTTTTTCTTCATCTGAGAATGTC
5841 TTTATTTTGCCTTAATTCATGAAAGATATTTTTGCTGGATATAAACTACTGTGTTGACAGTTCTTTCAGCCTCCATGGTT
5921 TCTGATGAGAAATGTGCAGCCATTAAAGTAATATTTCCCCTGTATGAAACATGTTATTTTTCTCTGAGTATTTTCAGGAA
6001 TCTTTGTCTTTGGTTTTTATTGGTTTGATTATGATGTGCCCGGGTGTTTGAATTTATTCTCTTTGGGATTTGTTGAGCTT
6081 AAATGTGTAAGTTTATGCCTTTCATCAGATTATGTAAAGTTTTAAACCATTCAGATATTTTCTGCTCTACTTTCTCCTCC
6161 CTCTTAGGCTCCAGTGATGCAAGTGTTAGACTCTTTGGTATTATCTCACAGATCTCAGAACCTCTGTTCATTTATTTTAT
6241 TTTAATAAATCATTTCAGTTAACAAAATCATATATTGTATGCAGCATGATGTTTCAATATGTATGTTCACATTGTAGGAT
6321 GTCTAAAGTAAAGATAATGAACATAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guAUGGA-UAUCUAUGUUCGAAc 5'
            |:|||  |:|:| ||||||| 
Target 5' tcTGCCTCTTGGGTTCAAGCTTc 3'
 4274 - 4296 164.00 -15.00
2 
miRNA  3' guauGGAU-AUCUA-UGUUCGAAc 5'
              ::|| || || |||||||| 
Target 5' ttctTTTACTACATGACAAGCTTc 3'
 3569 - 3592 158.00 -9.10
3 
miRNA  3' guAUGGAUAUCUAU---GUUCGAAc 5'
            || :| | |||:   ||||:|| 
Target 5' ctTAATTCTTGATGTTCCAAGTTTa 3'
 5724 - 5748 140.00 -6.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30508458 12 COSMIC
COSN31585784 25 COSMIC
COSN30152405 29 COSMIC
COSN30448811 55 COSMIC
COSN8865781 71 COSMIC
COSN30166249 88 COSMIC
COSN31567339 106 COSMIC
COSN31492785 111 COSMIC
COSN8601675 173 COSMIC
COSN31550677 202 COSMIC
COSN31488074 256 COSMIC
COSN30122985 266 COSMIC
COSN31609057 272 COSMIC
COSN30370966 373 COSMIC
COSN31570983 375 COSMIC
COSN26578247 572 COSMIC
COSN27199540 709 COSMIC
COSN27371385 710 COSMIC
COSN5865677 881 COSMIC
COSN8499950 1499 COSMIC
COSN19509896 1892 COSMIC
COSN25084023 1915 COSMIC
COSN9646833 2890 COSMIC
COSN14442592 3345 COSMIC
COSN5406953 3562 COSMIC
COSN25567637 3564 COSMIC
COSN6085177 3616 COSMIC
COSN1698645 3626 COSMIC
COSN20133805 3995 COSMIC
COSN25697891 4571 COSMIC
COSN8391485 4883 COSMIC
COSN5216386 4982 COSMIC
COSN16003313 5068 COSMIC
COSN21681571 5499 COSMIC
COSN1698644 6272 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs752863704 1 dbSNP
rs377742960 4 dbSNP
rs755068527 9 dbSNP
rs753874419 10 dbSNP
rs766343233 15 dbSNP
rs760506131 20 dbSNP
rs1336672144 21 dbSNP
rs773116283 23 dbSNP
rs767222337 26 dbSNP
rs1479759636 29 dbSNP
rs1304289496 31 dbSNP
rs1268848423 33 dbSNP
rs1221635135 36 dbSNP
rs1452893386 37 dbSNP
rs1270442056 38 dbSNP
rs188277260 40 dbSNP
rs981844601 41 dbSNP
rs774170179 46 dbSNP
rs1276742007 47 dbSNP
rs1221572461 49 dbSNP
rs1295547586 55 dbSNP
rs1339991430 61 dbSNP
rs969552359 65 dbSNP
rs1287400340 66 dbSNP
rs544455080 68 dbSNP
rs1452979441 69 dbSNP
rs143952575 71 dbSNP
rs1041589373 78 dbSNP
rs1447177787 92 dbSNP
rs1011498797 95 dbSNP
rs867238818 99 dbSNP
rs1010546447 101 dbSNP
rs1475992593 104 dbSNP
rs1271513974 107 dbSNP
rs1163045101 109 dbSNP
rs893498038 111 dbSNP
rs1435359481 121 dbSNP
rs28447050 122 dbSNP
rs1433076747 128 dbSNP
rs1297798688 129 dbSNP
rs556235675 141 dbSNP
rs999767422 149 dbSNP
rs113056950 150 dbSNP
rs1041613201 156 dbSNP
rs1358262351 162 dbSNP
rs529566336 166 dbSNP
rs1267174584 170 dbSNP
rs1463257464 174 dbSNP
rs1210066661 176 dbSNP
rs1261729113 186 dbSNP
rs1448107905 190 dbSNP
rs1187392090 221 dbSNP
rs1367217830 231 dbSNP
rs1476416919 242 dbSNP
rs1166100787 244 dbSNP
rs1359635103 248 dbSNP
rs1169689067 253 dbSNP
rs1455790485 255 dbSNP
rs1290717113 259 dbSNP
rs942767378 265 dbSNP
rs375842624 266 dbSNP
rs908054330 266 dbSNP
rs930951020 266 dbSNP
rs1287421673 275 dbSNP
rs1326644431 277 dbSNP
rs1240691381 295 dbSNP
rs1260821269 301 dbSNP
rs1421751189 304 dbSNP
rs1048369148 310 dbSNP
rs931287274 312 dbSNP
rs559127082 313 dbSNP
rs184173949 318 dbSNP
rs971970593 324 dbSNP
rs940590774 325 dbSNP
rs191926883 336 dbSNP
rs982366963 338 dbSNP
rs1035045803 339 dbSNP
rs1161495487 358 dbSNP
rs1203049013 359 dbSNP
rs978162001 361 dbSNP
rs1465664702 362 dbSNP
rs369621947 373 dbSNP
rs1377209631 376 dbSNP
rs1415245147 379 dbSNP
rs1023788275 381 dbSNP
rs1020117494 400 dbSNP
rs1011903353 405 dbSNP
rs1381546798 407 dbSNP
rs137975128 409 dbSNP
rs1307318206 413 dbSNP
rs1330147423 421 dbSNP
rs1230513641 422 dbSNP
rs1454336338 433 dbSNP
rs775126361 436 dbSNP
rs1379643155 453 dbSNP
rs957694807 454 dbSNP
rs1212176771 466 dbSNP
rs1274399019 468 dbSNP
rs1479891833 479 dbSNP
rs1297472634 485 dbSNP
rs561689413 491 dbSNP
rs999695042 492 dbSNP
rs995879795 495 dbSNP
rs901430867 506 dbSNP
rs1019754314 519 dbSNP
rs1396921109 519 dbSNP
rs754437321 528 dbSNP
rs1167933020 529 dbSNP
rs1040117313 556 dbSNP
rs1463397500 556 dbSNP
rs1298525095 560 dbSNP
rs940425590 561 dbSNP
rs1384651307 564 dbSNP
rs1305033639 575 dbSNP
rs1371031394 576 dbSNP
rs1226998609 578 dbSNP
rs886604938 582 dbSNP
rs1306255360 584 dbSNP
rs1383576849 588 dbSNP
rs1049263478 599 dbSNP
rs751262954 600 dbSNP
rs146251721 610 dbSNP
rs916864630 614 dbSNP
rs1424699539 615 dbSNP
rs1212001871 621 dbSNP
rs991499849 648 dbSNP
rs879061135 656 dbSNP
rs568051567 657 dbSNP
rs1454792770 662 dbSNP
rs939328575 663 dbSNP
rs1388313296 664 dbSNP
rs1007490617 665 dbSNP
rs889987692 668 dbSNP
rs1250262353 669 dbSNP
rs1430180034 673 dbSNP
rs769781530 683 dbSNP
rs1048498168 698 dbSNP
rs931423121 699 dbSNP
rs1253220336 702 dbSNP
rs978106381 706 dbSNP
rs1358139599 707 dbSNP
rs1289071462 708 dbSNP
rs1247727456 709 dbSNP
rs897117476 710 dbSNP
rs1037042311 716 dbSNP
rs1322023627 718 dbSNP
rs1317885452 719 dbSNP
rs1360495497 720 dbSNP
rs966804710 721 dbSNP
rs1321541197 722 dbSNP
rs796296239 722 dbSNP
rs957497668 722 dbSNP
rs1306004062 723 dbSNP
rs1389508126 725 dbSNP
rs539871642 727 dbSNP
rs572875931 729 dbSNP
rs745576179 731 dbSNP
rs1308588875 751 dbSNP
rs927888639 757 dbSNP
rs1363804408 760 dbSNP
rs1474127082 766 dbSNP
rs901474024 776 dbSNP
rs1344448731 792 dbSNP
rs1305115448 796 dbSNP
rs1458600028 797 dbSNP
rs549471603 801 dbSNP
rs1418138081 803 dbSNP
rs947868406 810 dbSNP
rs1317992437 823 dbSNP
rs1157338491 826 dbSNP
rs1421281887 831 dbSNP
rs1018662380 840 dbSNP
rs1004627949 850 dbSNP
rs1379072188 852 dbSNP
rs916451324 854 dbSNP
rs1295441523 865 dbSNP
rs1335738125 883 dbSNP
rs1199349735 887 dbSNP
rs1282273906 891 dbSNP
rs1318863097 891 dbSNP
rs1216552488 892 dbSNP
rs531453398 898 dbSNP
rs1236902242 899 dbSNP
rs1484616006 919 dbSNP
rs1189801652 920 dbSNP
rs886218728 921 dbSNP
rs1257917250 929 dbSNP
rs1472072481 932 dbSNP
rs1156492302 948 dbSNP
rs571029640 954 dbSNP
rs762155090 959 dbSNP
rs1174726038 962 dbSNP
rs1266149614 964 dbSNP
rs1433334572 972 dbSNP
rs185249120 976 dbSNP
rs1356453110 981 dbSNP
rs1409578652 984 dbSNP
rs1488589077 990 dbSNP
rs1278043010 995 dbSNP
rs375569857 1000 dbSNP
rs1375796836 1001 dbSNP
rs1259821097 1009 dbSNP
rs754221092 1015 dbSNP
rs1330976204 1019 dbSNP
rs923576467 1027 dbSNP
rs551835558 1041 dbSNP
rs1288844194 1045 dbSNP
rs965636489 1047 dbSNP
rs1343633485 1054 dbSNP
rs201924647 1056 dbSNP
rs1482626880 1061 dbSNP
rs1179386685 1068 dbSNP
rs527519265 1077 dbSNP
rs1055350140 1083 dbSNP
rs868117108 1085 dbSNP
rs1305010686 1096 dbSNP
rs1234309045 1098 dbSNP
rs939607095 1099 dbSNP
rs559910806 1100 dbSNP
rs1190129992 1105 dbSNP
rs1392684034 1111 dbSNP
rs1020269508 1134 dbSNP
rs1007174483 1135 dbSNP
rs954350759 1136 dbSNP
rs1027156925 1144 dbSNP
rs995557006 1150 dbSNP
rs927964952 1154 dbSNP
rs897256080 1162 dbSNP
rs1037010891 1167 dbSNP
rs182209947 1179 dbSNP
rs907230134 1180 dbSNP
rs1327255096 1183 dbSNP
rs1356496627 1184 dbSNP
rs1443151977 1186 dbSNP
rs1274358926 1195 dbSNP
rs529903039 1205 dbSNP
rs1389853168 1206 dbSNP
rs1193867501 1208 dbSNP
rs1304151970 1208 dbSNP
rs1046735866 1211 dbSNP
rs945448179 1214 dbSNP
rs1176245832 1216 dbSNP
rs200736656 1217 dbSNP
rs1432141333 1218 dbSNP
rs1200330976 1221 dbSNP
rs1433293650 1222 dbSNP
rs948037001 1228 dbSNP
rs916377105 1232 dbSNP
rs1455225924 1242 dbSNP
rs1193709974 1249 dbSNP
rs1053560283 1250 dbSNP
rs915351932 1265 dbSNP
rs936396715 1266 dbSNP
rs1466035531 1270 dbSNP
rs1268521149 1273 dbSNP
rs1422033596 1279 dbSNP
rs764310509 1280 dbSNP
rs923712747 1283 dbSNP
rs977836762 1294 dbSNP
rs1276579343 1295 dbSNP
rs1443268809 1295 dbSNP
rs1325794414 1320 dbSNP
rs1271742041 1322 dbSNP
rs1233997967 1324 dbSNP
rs1325946195 1325 dbSNP
rs1270958094 1326 dbSNP
rs557922730 1326 dbSNP
rs974656712 1329 dbSNP
rs1246831176 1330 dbSNP
rs965406301 1332 dbSNP
rs1191728374 1333 dbSNP
rs912267013 1338 dbSNP
rs1244303899 1340 dbSNP
rs986075608 1343 dbSNP
rs1475981971 1349 dbSNP
rs1164638796 1365 dbSNP
rs1415970472 1377 dbSNP
rs1463146958 1380 dbSNP
rs544252555 1381 dbSNP
rs1165793344 1383 dbSNP
rs1384287447 1387 dbSNP
rs1380584901 1388 dbSNP
rs1320259925 1389 dbSNP
rs1018609851 1391 dbSNP
rs1326950317 1391 dbSNP
rs954325947 1393 dbSNP
rs577146528 1395 dbSNP
rs1027125553 1397 dbSNP
rs1291150586 1398 dbSNP
rs995691420 1401 dbSNP
rs1366276500 1415 dbSNP
rs1233467631 1429 dbSNP
rs1336455594 1431 dbSNP
rs1347973572 1432 dbSNP
rs1206372388 1442 dbSNP
rs1264547716 1443 dbSNP
rs961561330 1449 dbSNP
rs1027380648 1450 dbSNP
rs1255803621 1453 dbSNP
rs1173692607 1454 dbSNP
rs995004334 1458 dbSNP
rs546013661 1468 dbSNP
rs1363411223 1475 dbSNP
rs1372002429 1476 dbSNP
rs1451803288 1479 dbSNP
rs1160360515 1484 dbSNP
rs1190482108 1484 dbSNP
rs1236340989 1489 dbSNP
rs1015673186 1493 dbSNP
rs575557308 1494 dbSNP
rs1433954210 1496 dbSNP
rs1002993969 1503 dbSNP
rs907195249 1505 dbSNP
rs1357187031 1514 dbSNP
rs1415136476 1515 dbSNP
rs1044406582 1526 dbSNP
rs1055257408 1527 dbSNP
rs1182708137 1537 dbSNP
rs1459831889 1552 dbSNP
rs1280577414 1553 dbSNP
rs1210738682 1557 dbSNP
rs141715160 1559 dbSNP
rs1486882983 1560 dbSNP
rs1003740956 1563 dbSNP
rs540720197 1564 dbSNP
rs1338746307 1567 dbSNP
rs906820125 1569 dbSNP
rs1249679703 1570 dbSNP
rs895082445 1571 dbSNP
rs1184086249 1572 dbSNP
rs76453599 1580 dbSNP
rs397693805 1581 dbSNP
rs945354975 1581 dbSNP
rs1171730425 1585 dbSNP
rs201980368 1586 dbSNP
rs35608486 1592 dbSNP
rs369317995 1592 dbSNP
rs1392729430 1593 dbSNP
rs1231403780 1594 dbSNP
rs1307116689 1594 dbSNP
rs1450844332 1601 dbSNP
rs1301974204 1605 dbSNP
rs1350664940 1607 dbSNP
rs915240955 1613 dbSNP
rs1053840151 1632 dbSNP
rs1479799996 1633 dbSNP
rs1342647825 1657 dbSNP
rs1335363512 1667 dbSNP
rs1053529073 1668 dbSNP
rs138767914 1678 dbSNP
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rs950382287 1748 dbSNP
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rs961531066 1774 dbSNP
rs1373836076 1805 dbSNP
rs1027738115 1806 dbSNP
rs994592270 1807 dbSNP
rs959416293 1815 dbSNP
rs772323624 1822 dbSNP
rs1003688433 1823 dbSNP
rs1442478942 1828 dbSNP
rs1238986648 1833 dbSNP
rs981895573 1852 dbSNP
rs1188070919 1853 dbSNP
rs1185911958 1858 dbSNP
rs536954863 1859 dbSNP
rs1042590034 1860 dbSNP
rs1416740097 1862 dbSNP
rs1023359946 1865 dbSNP
rs1342987771 1868 dbSNP
rs575814260 1868 dbSNP
rs1394516639 1880 dbSNP
rs1012939034 1893 dbSNP
rs189553095 1897 dbSNP
rs758807618 1902 dbSNP
rs1384285257 1904 dbSNP
rs568279703 1905 dbSNP
rs762131396 1905 dbSNP
rs1334478540 1906 dbSNP
rs899938871 1907 dbSNP
rs1032209683 1923 dbSNP
rs10492855 1924 dbSNP
rs1322449849 1927 dbSNP
rs902313476 1929 dbSNP
rs911737716 1943 dbSNP
rs1238842542 1952 dbSNP
rs140449159 1957 dbSNP
rs1256496554 1960 dbSNP
rs1474035987 1964 dbSNP
rs570413857 1972 dbSNP
rs1414060144 1984 dbSNP
rs1411069757 1997 dbSNP
rs116196832 2005 dbSNP
rs1343949409 2006 dbSNP
rs1455768819 2008 dbSNP
rs1302064401 2011 dbSNP
rs1403234589 2014 dbSNP
rs1049964928 2019 dbSNP
rs1295422384 2021 dbSNP
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rs972834881 5622 dbSNP
rs1186533147 5628 dbSNP
rs961092331 5632 dbSNP
rs1444517152 5635 dbSNP
rs1017068883 5636 dbSNP
rs1387523176 5639 dbSNP
rs376175319 5640 dbSNP
rs146447463 5642 dbSNP
rs1343599512 5645 dbSNP
rs1392398721 5652 dbSNP
rs1013564242 5665 dbSNP
rs1455435354 5672 dbSNP
rs1289486050 5679 dbSNP
rs369229227 5680 dbSNP
rs1023126679 5682 dbSNP
rs36481 5684 dbSNP
rs1035536904 5687 dbSNP
rs896083562 5699 dbSNP
rs1001408691 5705 dbSNP
rs533387915 5706 dbSNP
rs1031653287 5731 dbSNP
rs999238806 5737 dbSNP
rs1042903023 5752 dbSNP
rs530720074 5756 dbSNP
rs72018856 5756 dbSNP
rs947109634 5761 dbSNP
rs1215922743 5788 dbSNP
rs559516713 5791 dbSNP
rs1254940184 5793 dbSNP
rs891565102 5798 dbSNP
rs1202388270 5812 dbSNP
rs1459572433 5812 dbSNP
rs1245440944 5815 dbSNP
rs1443658556 5818 dbSNP
rs1280521614 5824 dbSNP
rs185149145 5827 dbSNP
rs547687729 5828 dbSNP
rs1406106592 5841 dbSNP
rs922936467 5844 dbSNP
rs191882369 5854 dbSNP
rs1160077097 5865 dbSNP
rs1049619901 5874 dbSNP
rs933880177 5879 dbSNP
rs1468295757 5883 dbSNP
rs1338626980 5890 dbSNP
rs1406652604 5891 dbSNP
rs1299518642 5894 dbSNP
rs922489666 5911 dbSNP
rs1378287100 5912 dbSNP
rs1375212059 5913 dbSNP
rs1224037604 5939 dbSNP
rs1300148956 5952 dbSNP
rs1320877711 5954 dbSNP
rs1036966320 5955 dbSNP
rs1265569465 5960 dbSNP
rs201157385 5962 dbSNP
rs1204407926 5964 dbSNP
rs1231577332 5965 dbSNP
rs909550812 5971 dbSNP
rs1481816380 5973 dbSNP
rs1178064562 5984 dbSNP
rs1428774390 5986 dbSNP
rs983830410 5986 dbSNP
rs974990640 5993 dbSNP
rs969812360 6005 dbSNP
rs1429944133 6006 dbSNP
rs1409340970 6010 dbSNP
rs755546604 6011 dbSNP
rs1450216022 6018 dbSNP
rs1376136367 6034 dbSNP
rs916064935 6038 dbSNP
rs909368157 6041 dbSNP
rs1307557876 6042 dbSNP
rs1442654471 6045 dbSNP
rs1428035723 6046 dbSNP
rs992978980 6058 dbSNP
rs1406280196 6061 dbSNP
rs1372681555 6075 dbSNP
rs1416046822 6080 dbSNP
rs1171520523 6085 dbSNP
rs984981891 6091 dbSNP
rs1423623998 6113 dbSNP
rs1412191616 6117 dbSNP
rs1205592520 6119 dbSNP
rs1268471592 6126 dbSNP
rs62057594 6128 dbSNP
rs1475859778 6134 dbSNP
rs919319955 6138 dbSNP
rs560738043 6146 dbSNP
rs1032311162 6154 dbSNP
rs1475115884 6156 dbSNP
rs1203876929 6159 dbSNP
rs1166154807 6164 dbSNP
rs762921392 6169 dbSNP
rs999125149 6172 dbSNP
rs1410349688 6177 dbSNP
rs992659401 6178 dbSNP
rs773525687 6179 dbSNP
rs1363454620 6183 dbSNP
rs960699967 6191 dbSNP
rs569305682 6204 dbSNP
rs969120411 6205 dbSNP
rs1426219725 6212 dbSNP
rs141759259 6214 dbSNP
rs1427961884 6219 dbSNP
rs1001397266 6228 dbSNP
rs1268945460 6232 dbSNP
rs1204884817 6234 dbSNP
rs1320892615 6245 dbSNP
rs1287547580 6250 dbSNP
rs144436509 6251 dbSNP
rs1356062950 6266 dbSNP
rs1357709998 6268 dbSNP
rs1287766823 6270 dbSNP
rs1292770110 6271 dbSNP
rs770774008 6273 dbSNP
rs866485799 6276 dbSNP
rs1051868759 6288 dbSNP
rs1243810446 6290 dbSNP
rs1475725837 6291 dbSNP
rs1021392647 6298 dbSNP
rs1383214789 6299 dbSNP
rs75750360 6301 dbSNP
rs1383725551 6303 dbSNP
rs1298978983 6304 dbSNP
rs1457664847 6311 dbSNP
rs1345235647 6325 dbSNP
rs1436525771 6334 dbSNP
rs746646486 6336 dbSNP
rs545118176 6339 dbSNP
rs773189062 6339 dbSNP
rs1167424089 6346 dbSNP
rs997715750 6346 dbSNP
rs1037319785 6350 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' guauggauaucuauGUUCGAAc 5'
                        ||||||| 
Target 5' -------------uCAAGCUUc 3'
 		1 - 9
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000394806.2 | 3UTR | UCAAGCUUCCCUCACCA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE38974 Chronic obstructive pulmonary disease -0.531 3.2e-3 -0.488 6.7e-3 25 Click to see details
GSE28544 Breast cancer 0.471 1.0e-2 0.461 1.2e-2 24 Click to see details
GSE21687 Ependynoma primary tumors 0.279 1.3e-2 0.288 1.1e-2 64 Click to see details
GSE19350 CNS germ cell tumors -0.636 1.3e-2 -0.332 1.5e-1 12 Click to see details
GSE42095 Differentiated embryonic stem cells -0.42 2.3e-2 -0.344 5.4e-2 23 Click to see details
GSE28260 Renal cortex and medulla -0.284 1.7e-1 -0.495 4.3e-2 13 Click to see details
GSE26953 Aortic valvular endothelial cells -0.18 2.0e-1 -0.153 2.4e-1 24 Click to see details
GSE38226 Liver fibrosis -0.152 2.6e-1 -0.033 4.4e-1 21 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.087 3.4e-1 0.414 2.0e-2 25 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.144 3.6e-1 -0.183 3.2e-1 9 Click to see details
GSE32688 Pancreatic cancer -0.054 3.8e-1 -0.115 2.7e-1 32 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.041 4.3e-1 -0.412 3.6e-2 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
LUSC -0.565 0 -0.379 0.04 22 Click to see details
PRAD 0.455 0.01 0.237 0.13 24 Click to see details
LIHC 0.391 0.02 0.385 0.02 30 Click to see details
HNSC 0.431 0.02 0.447 0.01 24 Click to see details
KICH 0.737 0.05 0.829 0.02 6 Click to see details
STAD -0.454 0.05 -0.538 0.02 14 Click to see details
KIRC 0.617 0.1 0.029 0.48 6 Click to see details
KIRP -0.368 0.15 -0.248 0.24 10 Click to see details
THCA -0.077 0.31 -0.113 0.23 44 Click to see details
UCEC -0.12 0.36 0.000 0.5 11 Click to see details
LUAD 0.16 0.37 0.321 0.24 7 Click to see details
CHOL 0.163 0.4 -0.100 0.44 5 Click to see details
BRCA 0.07 0.42 0.082 0.41 11 Click to see details
BLCA 0.022 0.48 0.000 0.5 8 Click to see details
BLCA 0.022 0.48 0.000 0.5 8 Click to see details
BLCA 0.022 0.48 0.000 0.5 8 Click to see details
BLCA 0.022 0.48 0.000 0.5 8 Click to see details
BLCA 0.022 0.48 0.000 0.5 8 Click to see details
107 hsa-miR-100-3p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT105690 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT151558 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 2 4
MIRT167753 SGK1 serum/glucocorticoid regulated kinase 1 2 2
MIRT195380 CBFB core-binding factor beta subunit 2 2
MIRT283995 DNAJA2 DnaJ heat shock protein family (Hsp40) member A2 2 2
MIRT317145 E2F3 E2F transcription factor 3 2 4
MIRT380785 ZFP3 ZFP3 zinc finger protein 2 2
MIRT380927 ZNF264 zinc finger protein 264 2 2
MIRT441600 ABCB5 ATP binding cassette subfamily B member 5 2 6
MIRT443896 NUDT3 nudix hydrolase 3 2 4
MIRT444030 GREM1 gremlin 1, DAN family BMP antagonist 2 4
MIRT444112 CEPT1 choline/ethanolamine phosphotransferase 1 2 2
MIRT444169 ZNF701 zinc finger protein 701 2 2
MIRT444366 TIMM8B translocase of inner mitochondrial membrane 8 homolog B 2 2
MIRT444371 CNBP CCHC-type zinc finger nucleic acid binding protein 2 2
MIRT444517 ZNF525 zinc finger protein 525 2 2
MIRT444525 CNIH4 cornichon family AMPA receptor auxiliary protein 4 2 2
MIRT444529 EIF2A eukaryotic translation initiation factor 2A 2 2
MIRT444537 PHKB phosphorylase kinase regulatory subunit beta 2 2
MIRT444702 GATSL2 cytosolic arginine sensor for mTORC1 subunit 2 2 2
MIRT444717 CMSS1 cms1 ribosomal small subunit homolog (yeast) 2 2
MIRT444730 TMC7 transmembrane channel like 7 2 2
MIRT444777 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D 2 2
MIRT444802 TMEM251 transmembrane protein 251 2 2
MIRT444995 LRRC57 leucine rich repeat containing 57 2 2
MIRT445073 C16orf87 chromosome 16 open reading frame 87 2 2
MIRT445250 SEMA5A semaphorin 5A 2 2
MIRT445336 KATNAL1 katanin catalytic subunit A1 like 1 2 2
MIRT445426 TPT1 tumor protein, translationally-controlled 1 2 4
MIRT445469 TRIM13 tripartite motif containing 13 2 2
MIRT445646 NPY4R neuropeptide Y receptor Y4 2 2
MIRT445759 AGO1 argonaute 1, RISC catalytic component 2 2
MIRT445838 SRSF11 serine and arginine rich splicing factor 11 2 2
MIRT445868 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 2 2
MIRT446368 STX16 syntaxin 16 2 2
MIRT446444 THYN1 thymocyte nuclear protein 1 2 2
MIRT446593 TASP1 taspase 1 2 2
MIRT446926 SRSF7 serine and arginine rich splicing factor 7 2 2
MIRT447121 SLFN5 schlafen family member 5 2 2
MIRT447196 CDCP1 CUB domain containing protein 1 2 2
MIRT447358 STOM stomatin 2 2
MIRT447361 FAM161B family with sequence similarity 161 member B 2 2
MIRT447374 NUP205 nucleoporin 205 2 2
MIRT447467 OSMR oncostatin M receptor 2 2
MIRT447606 MRPL3 mitochondrial ribosomal protein L3 2 2
MIRT447682 ASPA aspartoacylase 2 2
MIRT447715 ERP44 endoplasmic reticulum protein 44 2 2
MIRT447814 EMX1 empty spiracles homeobox 1 2 2
MIRT447855 RRP8 ribosomal RNA processing 8 2 4
MIRT447866 KIAA1244 ARFGEF family member 3 1 1
MIRT447890 STRIP2 striatin interacting protein 2 2 2
MIRT447916 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 2 2
MIRT447935 DUSP4 dual specificity phosphatase 4 2 2
MIRT448813 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit 2 2
MIRT448927 CKS1B CDC28 protein kinase regulatory subunit 1B 2 2
MIRT449105 CREBRF CREB3 regulatory factor 2 2
MIRT449216 ZNHIT3 zinc finger HIT-type containing 3 2 2
MIRT449336 ACTBL2 actin, beta like 2 2 2
MIRT449675 SOX3 SRY-box 3 2 2
MIRT449724 POU2F1 POU class 2 homeobox 1 2 2
MIRT449768 PRAMEF7 PRAME family member 7 2 2
MIRT449804 PRAMEF8 PRAME family member 8 2 2
MIRT449850 BCL2L13 BCL2 like 13 2 2
MIRT449866 POFUT2 protein O-fucosyltransferase 2 2 2
MIRT450067 SYT9 synaptotagmin 9 2 2
MIRT450197 ZHX3 zinc fingers and homeoboxes 3 2 2
MIRT450386 TENM4 teneurin transmembrane protein 4 2 2
MIRT450435 PAX8 paired box 8 2 2
MIRT450716 PVRL3 nectin cell adhesion molecule 3 2 2
MIRT495906 PGM2L1 phosphoglucomutase 2 like 1 2 2
MIRT497543 PPTC7 PTC7 protein phosphatase homolog 2 2
MIRT497630 ZNF576 zinc finger protein 576 2 2
MIRT497756 OXGR1 oxoglutarate receptor 1 2 2
MIRT498072 SLC25A12 solute carrier family 25 member 12 2 2
MIRT500542 XPO4 exportin 4 2 4
MIRT500848 SYPL1 synaptophysin like 1 2 4
MIRT511621 HIST1H3J histone cluster 1 H3 family member j 2 4
MIRT513745 PKNOX1 PBX/knotted 1 homeobox 1 2 2
MIRT535077 PPP1CB protein phosphatase 1 catalytic subunit beta 2 2
MIRT543133 ZFP36L1 ZFP36 ring finger protein like 1 2 2
MIRT544518 GTF2E2 general transcription factor IIE subunit 2 2 2
MIRT544666 MED19 mediator complex subunit 19 2 2
MIRT545407 KIAA1715 lunapark, ER junction formation factor 2 2
MIRT547569 LRIG3 leucine rich repeats and immunoglobulin like domains 3 2 4
MIRT548767 CNN3 calponin 3 2 2
MIRT551009 TRIM4 tripartite motif containing 4 2 2
MIRT555077 PURG purine rich element binding protein G 2 2
MIRT560753 ZNF616 zinc finger protein 616 2 2
MIRT563752 FOXO3 forkhead box O3 2 2
MIRT565531 SON SON DNA binding protein 2 2
MIRT613933 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 2 2
MIRT614433 TAZ tafazzin 2 2
MIRT622520 RAP2A RAP2A, member of RAS oncogene family 2 2
MIRT626037 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 2 2
MIRT648459 LEAP2 liver enriched antimicrobial peptide 2 2 2
MIRT654982 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 2 4
MIRT689103 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT704259 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT711194 CXCL3 C-X-C motif chemokine ligand 3 2 2
MIRT713315 VLDLR very low density lipoprotein receptor 2 2
MIRT717266 BMPR2 bone morphogenetic protein receptor type 2 4 2
MIRT718248 CCDC18 coiled-coil domain containing 18 2 2
MIRT721944 NGRN neugrin, neurite outgrowth associated 2 2
MIRT721948 IL1RAPL1 interleukin 1 receptor accessory protein like 1 2 2
MIRT734969 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 3 0
MIRT735945 NME2 NME/NM23 nucleoside diphosphate kinase 2 0 0
MIRT737404 HOXA1 homeobox A1 4 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-100 Trichostatin A (TSA) NULL 444732 Microarray human pancreatic cancer cell line BxPC-3 19112422 2009 up-regulated
miR-100 Etoposide approved 36462 Microarray Normal human fibroblasts (AG01522) 19633716 2009 down-regulated
miR-100 Formaldehyde NULL 712 Microarray Human lung epithelial cells (A549) 21147603 2011 down-regulated
miR-100 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-100 Docetaxel approved 148124 Microarray human lung adenocarcinoma cells 22120675 2012 up-regulated
miR-100 Trastuzumab approved NULL Microarray BT474 cells 22384020 2012 up-regulated
miR-100 Trastuzumab approved NULL Microarray SKBR3 cells. 22384020 2012 up-regulated
miR-100 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-100 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-100 Goserelin approved 47725 Microarray prostate 22674191 2012 up-regulated
miR-100 Glucocorticoid NULL NULL Quantitative real-time PCR Eosinophilic esophagitis 22815788 2012 up-regulated
miR-100 Glucocorticoid NULL NULL TaqMan low-density array Eosinophilic esophagitis 22815788 2012 up-regulated
miR-100 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 down-regulated
miR-100 17beta-estradiol (E2) approved 5757 Microarray rat breast 17700064 2007 down-regulated
miR-100 Budesonide approved 5281004 Microarray neonatal mice liver 20145010 2010 down-regulated
miR-100 Propranolol approved 4946 Quantitative real-time PCR heart 22847192 2012 up-regulated
miR-100 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 down-regulated
miR-100 Ethanol NULL 702 Microarray zebrafish embryos 22298809 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-100 Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-100 Paclitaxel 36314 NSC125973 approved sensitive cell line (W1)
hsa-mir-100 Doxorubicin 31703 NSC123127 approved sensitive cell line (W1)
hsa-mir-100 Methotrexate 126941 NSC740 approved sensitive cell line (W1)
hsa-mir-100 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-mir-100 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-100 Tamoxifen 2733525 NSC180973 approved sensitive cell line (MCF7)
hsa-mir-100 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (SKOV3)
hsa-miR-100-3p Taxane 9548828 sensitive High Prostate Cancer cell line (PC-3, PR200)
hsa-miR-100-3p Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia leukemia stem cells
hsa-miR-100-3p Ponatinib 24826799 NSC758487 approved sensitive High Chronic Myelogenous Leukemia leukemia stem cells
hsa-miR-100-3p Docetaxel 148124 NSC628503 approved sensitive High Prostate Cancer cell line (PC-3)
hsa-miR-100-3p Gefitinib 123631 NSC715055 approved sensitive cell line (PC9)
hsa-miR-100-3p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-100-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (PC9)
hsa-miR-100-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (A375)
hsa-miR-100-3p Vemurafenib 42611257 NSC761431 approved sensitive cell line (451Lu)
hsa-miR-100-3p Palbociclib 5330286 NSC758247 approved sensitive tissue (breast cancer)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-100-3p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-100-3p Pegylated interferon alpha+Ribavirin resistant tissue (chronic hepatitis C)
hsa-miR-100-3p Gemcitabine 60750 NSC613327 approved sensitive cell line (MDA-231)
hsa-miR-100-3p Paclitaxel 36314 NSC125973 approved sensitive cell line (PC3PR20)
hsa-miR-100-3p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)

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