miRTarBase - #MIRT445075


—
pre-miRNA Information
pre-miRNA hsa-mir-526b   
Genomic Coordinates chr19: 53694393 - 53694475
Description Homo sapiens miR-526b stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-526b-5p
Sequence 14| CUCUUGAGGGAAGCACUUUCUGU |36
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs527640376 1 dbSNP
rs1397075062 2 dbSNP
rs1462454250 5 dbSNP
rs774071640 7 dbSNP
rs1329470722 12 dbSNP
rs1471427006 13 dbSNP
rs375077514 15 dbSNP
rs1280430663 16 dbSNP
rs370046048 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol CXXC4   
Synonyms IDAX
Description CXXC finger protein 4
Transcript NM_025212   
Expression
Putative miRNA Targets on CXXC4
3'UTR of CXXC4
(miRNA target sites are highlighted)		 
>CXXC4|NM_025212|3'UTR
   1 AGCAGTAGTATATCTTATTTTCAAGGCATTTGGAAATGAAGGGCAAACTAATGTCTTGTTTTAAGAAACTGCTTAGTCCA
  81 CCACTGAAGAAAATATCCAGAAATTATTTTCATTTTATGTATAGGGCTTTCTTCAAAAAAAAAAAAAAAGAGGAAAAGAA
 161 AAGAAAAAGACATAAAAATAATGTGAGAGCTTGGAGAATTGGCCAGTCTATTTACTTTCAATACGCTGATTCTTTCTTTG
 241 ATGTAATTTAGCTATAGTAGTGAAGTTGTTGTCTATTTTGAAAGTGGCTGTAAAAAATAAGTTTGGGTAAACCCCTGCTG
 321 TAAAATCATGTATCTTTGCAAAGTACATATCTATACTTCATTTTCAAATATATGTGTTTCAGTACTGTAAACTGTACAGA
 401 TAGCAGCTTGTATTTTGTGTGTTTAGACACAAGGAGACAATCATGTCTGAGCATCTATGGAGATTAACAGTTTGTACACA
 481 ACAGTATGGTTCTGCAAGTTAAATCTGGAGCAATAAATTTTAGCTTTAACTATTTTTTGCCAGTGGTTTAGAAGCAGCAA
 561 CAGCACTGGCACCATTTTGCCATGCATCTTTCCATAGAGACTTGATGCCAAGTTTTACAAGACTAAAAGATTATGATGCA
 641 TCCACCAATTACCTTCAGTTTTATTGTTATAAGAGGGGAAGATGTTATGAAAGTTTCAATTAATCTTTTGAGCACTATAT
 721 TAGAGTAGTGGTTATGCACTTGCATTGCTTACAAACGAGCTGTACAGAAGGGTATACCTCCCAAATACTTAGTGTAGTTG
 801 ACTTGTCTTGGGTTGCACTGTAAGGCAGAGTACTCAGAGTAGTTGGAAAATGCAGAATCAGTTGTATAATTTTTTTTTAT
 881 AAAAACGGTGTTTTTTAGGCTAAAGAATAAAGTATCATATCTTAGGAGGGGAAAATTTATAACTGACATTTTTTCCCCAG
 961 CCCAATATGGGCTGTATACGTTTTATTGTTTCTTAATTTTTTTCTTATTTTTTCTGTAGGAAAAAATCTTAATAAAAACT
1041 ACCCCAATGTTTTAACTTCATGTATGATATTAAATGGGTAGTTTTAACACTTGAATATGTTGAGGGCTTCTGCCTTGAGG
1121 CAGGGCTTGATATATTTTTAATTTACAAAGAATTAAACATATTCATAAAAGTGAGGCATTTTATCTCTTTTTATTTTCTT
1201 TTCTCATAGCCACCCAGTTGGACTAGTGGTCTTCCCCTGGTCCTTCAGTAAAATGCTCCATTGCTGCCATTTCCATTGTT
1281 GTTACTTGATGCTTTCATTCCTGAGAAGGCAGGGCTACAGTCTCTGGAATTTCATAAATGCATGACATACCCCTCCCCCC
1361 ACAACCTACACACAAAGGATCTAATGCTTCATAGAACCTGTGCTACCTTTTCATGTTGGAGTTGGTTTTCTTATCACAGT
1441 CAGGGTTCTTAAGGCCGTCCCATCAGGACAAATATTTACCTTCCATTTTATTTCTGTTTGTCCCAATTATAAAGACTATT
1521 TTCAGTTTCAGGAGTAGAACAGGGTTTAGCAAAAATATGTAGAGTATCAAAGTTACCTACTGCAACTTTTTGTTCTTTGT
1601 CCACTAGCCAGGTGATTTAACCCACTAAATCCATTAGCTTGCTGAAAAATGTTAGCAAAGTAAATCACGAGAAGAAAGAT
1681 AATTTGAGAAGAGAAATGGTATGGTACAATGAAAGAAGCTGTAAAGATTAGGAAAGACTAGTAAGTGAATATTTTTAAAA
1761 ATTTAGTTGTAGATTTCAATGGGATACGATAGGACAGAAAAGATTTTTTAAAAAGCAGAAAGAGTGTTTCATGGTGAAAG
1841 TACTGGGGGAGGGTGGACAAAGCATGCACACATGCCAATTTGAAAATCAAGTGTGACTTACCTCACGTAGAGTATGAATA
1921 CATGGTCCACAGTTATGGTCAACAAGCGTTTTCAAGAAAAACTCATGATGTGTTACACCCATCCATATTTAGAGATGAGA
2001 ATTAAATGATTACAAGCTAAAATGTGCTGTATACTGTATTAATTTTGAGATAGCTTTCTACTTGATGTATATTTCTTTGA
2081 GGGTTTCTATCTAGTTAGAATTTCAGCTTCTGCTGTGGGACCAATGAGAGCTGTATGAGTTTTTTTTTTTTTTTCCTTTT
2161 CCATTATTTTATTTTTTGTTTTTTGTTTACCAATTTGCTAATTAATTACAAGTAAGTGAAAACTTACTTTCACACTTGAA
2241 TGATAAGCTTGCCTTGCTCTTTGGAAAATGATGATTGTTATTACAGAAGTGAAACAAACTTCTATTCAGGCTACAGTAGG
2321 CATACAATAACCTAAAGATCTCATAGAAGTATACTGAGAGTCTAAAATACATTCTAGTAGTGCATGTCTTGGTGTGCTTT
2401 TGTTTGTTTGCTTTCTAAAAGAACTAATGAATCTGTATATTGTAAACTGTGGTGTTTTACATGTCAATTCATTTTTTTAA
2481 TGAAAGAAAATTTGTTGATTACTGAAATGAGAAAGTGTAGCTTTTCATTAATTCTCTTATGTTTTTTATTCTTGATATTG
2561 TTCTTTTATACCACCCACTTTTTAATGTTTTTGGTTAAACTCCATTTATATAATGTAGGATGCATATAAAGTTCTCATTG
2641 GTGATGTTGAAGAAAGAGATGACTCTTCTGGCCTTTCTCTAGTTTTCTTCCTCATATGTCCCTGTACTGAGAACTTCTAA
2721 AGCTTATCATTATAAACCTAAGGCAGTGATTTGAAAGTTTACATTTTTCATGATTTTCAAATACCAATGAAATGTAACTT
2801 TTAAATATTCCTCACTGTGTGTTTTATATTCACTGTCAAGAAAATTCAGAATGTAGATTGTGTGGACAGCTATACACAAC
2881 TTAATAATTATATATCAGATAAACTGAATAAAAAACTTTGTAAGAGTGGTCTACGCACACAGGATCTTGTCCTCCCTAGG
2961 CGTGGATAGAGAGATGCCATAATCTGCCAGCATTTGGGGAGATCATGGTAAATACTTGAGGCGTTGATACATAGTGCAGT
3041 GAGCCAATTTCCTTTTCAGTTGTCACTCAGCACCATAACATCACGAAGAACATCATTAATGCAAACCTCTCACTAAGCCT
3121 TCAGACCAAAGTGGCTTTCTGATGGACTCTGCCTGTCTGTCTACAAGTGGAGTCAGATTCAAAGTAGAAATGTATCCATC
3201 CTTGGGAAAGAAAATAGGAAGTCTTCCCCCACTGTAGGAGTATATAAAAATGTCTCCTGGTTGCTTAATTCCCAACACTC
3281 AATTTCCTTCTTCTAAACACATTTATAAGGAGCAAGAGATGGTGCACTTATTATGAATTAATATTAAGCAATCACTAAAA
3361 GAAAGGAATATTCTCTTCCTTTCAATCAGAAACCCTGATATGTAAGTTGTGCAATTAATGCTAAAGCATATAAAGTCTTT
3441 AAGCTGATAAGTATCTGTAATCAAATAATGAAAAAAGGAAAGCAGTTAAATGAACACACTATTCAGGGTCAAATATGTTC
3521 AGCAAAAAGCCGTAGCGGGTCTTTGATCATGGTTAGATTCACAGTGATATCAAACAGTTGGTTCTCATGTAACAGCTAAA
3601 TGTTTCAGTTTTTTTTTTTTTATTAAATTTGGCATTTCACACTGAGATCTGTATTCCTAGTGAATAAAAGACAGCTACTA
3681 TATTAGGAGGGATTCCATTTTCACAATTGCAAAACAGATATTTCAGGAACATGGGCCACAAAATGTACTCCTTTCACAGT
3761 GTTCTCCTCTTCTGAACTGTGCAGTTATCTATTAAATTTTCTAATAGATATTTGTGTAAGGTGTATGTATGCTTGTGCAA
3841 TTATTTAAAAAACGGTTTTGGAAAACAGTGTATTTATTAAAGAAAATTACTTATGGGGCATGTACAAAACTGTAAAAAAA
3921 AAAAAAAAGTAAAAAAAATCACATTCAATTTGCCCAGTAAAGTTGTTTTTGTGAAATTTCTGTGTTGTTGAATAAAGGAC
4001 TTTAGTACTCAAAATAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugUCUUUCACGAA------GG-GAGUUCUc 5'
            ||||| |||||      || || |||| 
Target 5' taAGAAACTGCTTAGTCCACCACTGAAGAa 3'
 62 - 91 139.00 -12.90
2 
miRNA  3' ugucuUUCACGAAGGGAGUUCUc 5'
               ||| |:|   :|||||| 
Target 5' tcaacAAGCGTT---TTCAAGAa 3'
 1939 - 1958 135.00 -8.40
3 
miRNA  3' ugucUUUCACGAAGGGAGUUCUc 5'
              || || ||| ::|:|||| 
Target 5' aactAATGT-CTTGTTTTAAGAa 3'
 46 - 67 130.00 -8.20
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30452159 38 COSMIC
COSN31580380 41 COSMIC
COSN31504385 42 COSMIC
COSN31527010 54 COSMIC
COSN26633972 118 COSMIC
COSN31531253 132 COSMIC
COSN19654797 134 COSMIC
COSN28767148 159 COSMIC
COSN1977688 461 COSMIC
COSN28198091 497 COSMIC
COSN30301737 532 COSMIC
COSN9582993 775 COSMIC
COSN28202193 843 COSMIC
COSN20814385 953 COSMIC
COSN24917681 1007 COSMIC
COSN25180820 1008 COSMIC
COSN19193536 1300 COSMIC
COSN15199854 1532 COSMIC
COSN5151017 1671 COSMIC
COSN29257705 1698 COSMIC
COSN28255946 1793 COSMIC
COSN9582992 1809 COSMIC
COSN6788735 1995 COSMIC
COSN22114472 2680 COSMIC
COSN9582991 3161 COSMIC
COSN25138648 3251 COSMIC
COSN9582990 3455 COSMIC
COSN4625605 3910 COSMIC
COSN27528555 3913 COSMIC
COSN29008864 3914 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs767057348 1 dbSNP
rs763540720 4 dbSNP
rs1471053469 5 dbSNP
rs750882743 5 dbSNP
rs1177384597 6 dbSNP
rs765523363 7 dbSNP
rs1314721287 8 dbSNP
rs1435097918 9 dbSNP
rs1379515940 17 dbSNP
rs1156393309 25 dbSNP
rs762198997 27 dbSNP
rs532113204 31 dbSNP
rs1363830926 38 dbSNP
rs776742962 43 dbSNP
rs1440245359 51 dbSNP
rs1405695929 53 dbSNP
rs1006181186 68 dbSNP
rs994007947 71 dbSNP
rs1300040139 83 dbSNP
rs1270503991 89 dbSNP
rs1391336858 97 dbSNP
rs748325838 98 dbSNP
rs1305245032 100 dbSNP
rs4413407 118 dbSNP
rs1380118394 119 dbSNP
rs547628940 120 dbSNP
rs1038209759 121 dbSNP
rs1469848649 122 dbSNP
rs1201155344 128 dbSNP
rs1360431922 131 dbSNP
rs1408342312 134 dbSNP
rs1480888292 135 dbSNP
rs527832213 135 dbSNP
rs1409850057 136 dbSNP
rs1420870273 138 dbSNP
rs1188589790 139 dbSNP
rs1443236646 140 dbSNP
rs1176578704 146 dbSNP
rs1001834683 147 dbSNP
rs1242741339 148 dbSNP
rs1184488711 149 dbSNP
rs1199959902 150 dbSNP
rs1209133679 150 dbSNP
rs1479582856 150 dbSNP
rs1481284578 150 dbSNP
rs34493088 150 dbSNP
rs1368071139 151 dbSNP
rs1405928028 151 dbSNP
rs71600293 151 dbSNP
rs1462684234 152 dbSNP
rs4282179 159 dbSNP
rs1221324173 169 dbSNP
rs1297042264 171 dbSNP
rs1045032985 179 dbSNP
rs1203940718 186 dbSNP
rs1045065504 204 dbSNP
rs745646592 207 dbSNP
rs918000318 210 dbSNP
rs1273709848 214 dbSNP
rs1052981124 219 dbSNP
rs896711163 224 dbSNP
rs925401992 225 dbSNP
rs181795114 229 dbSNP
rs771598998 240 dbSNP
rs1420554447 243 dbSNP
rs979641077 247 dbSNP
rs1452866042 260 dbSNP
rs964614825 273 dbSNP
rs1380922204 275 dbSNP
rs1279148170 280 dbSNP
rs1057046716 293 dbSNP
rs935452110 297 dbSNP
rs1302870774 298 dbSNP
rs778744702 298 dbSNP
rs1041525115 300 dbSNP
rs531629849 312 dbSNP
rs1362298101 314 dbSNP
rs1213475144 323 dbSNP
rs1294776167 326 dbSNP
rs562928312 339 dbSNP
rs914249964 341 dbSNP
rs1355617470 345 dbSNP
rs985794767 347 dbSNP
rs1171098747 349 dbSNP
rs953438001 361 dbSNP
rs1217749591 365 dbSNP
rs1242910444 373 dbSNP
rs1385046828 378 dbSNP
rs1485666544 393 dbSNP
rs1025323628 397 dbSNP
rs1245062914 400 dbSNP
rs923185886 403 dbSNP
rs975898519 405 dbSNP
rs1163466979 410 dbSNP
rs961816712 417 dbSNP
rs1425730346 419 dbSNP
rs545861915 423 dbSNP
rs1402796739 442 dbSNP
rs577460701 445 dbSNP
rs554262533 447 dbSNP
rs1014708139 454 dbSNP
rs994284202 457 dbSNP
rs1248701136 462 dbSNP
rs1317900251 463 dbSNP
rs962511613 464 dbSNP
rs1006295996 474 dbSNP
rs952150199 477 dbSNP
rs1314277040 481 dbSNP
rs1354243806 483 dbSNP
rs1024080974 486 dbSNP
rs1176625319 489 dbSNP
rs1225190755 522 dbSNP
rs1284706957 532 dbSNP
rs1012218787 545 dbSNP
rs1207091997 546 dbSNP
rs1265270427 550 dbSNP
rs1461806415 551 dbSNP
rs1183133167 552 dbSNP
rs896736736 556 dbSNP
rs1471446255 564 dbSNP
rs757074603 569 dbSNP
rs1407746501 574 dbSNP
rs1399717872 593 dbSNP
rs867852538 599 dbSNP
rs1156466568 604 dbSNP
rs1407910603 605 dbSNP
rs1469864682 621 dbSNP
rs999773717 626 dbSNP
rs1335502195 629 dbSNP
rs138156499 629 dbSNP
rs1043904242 633 dbSNP
rs189382188 635 dbSNP
rs1013535048 639 dbSNP
rs1265214797 641 dbSNP
rs1228522478 645 dbSNP
rs1324628289 648 dbSNP
rs1203048330 652 dbSNP
rs1276609523 658 dbSNP
rs892864551 659 dbSNP
rs1050529068 672 dbSNP
rs1440016158 674 dbSNP
rs1205871719 675 dbSNP
rs896455102 678 dbSNP
rs1468903697 687 dbSNP
rs1290701119 692 dbSNP
rs931633053 697 dbSNP
rs554592184 699 dbSNP
rs538171754 703 dbSNP
rs746983655 708 dbSNP
rs976013136 712 dbSNP
rs1175023390 713 dbSNP
rs1399470672 714 dbSNP
rs1411191624 715 dbSNP
rs1329425765 720 dbSNP
rs1353916387 723 dbSNP
rs925402411 724 dbSNP
rs1284968050 730 dbSNP
rs1346329019 731 dbSNP
rs940606437 738 dbSNP
rs907744483 739 dbSNP
rs1222689133 744 dbSNP
rs984572865 749 dbSNP
rs1373485327 751 dbSNP
rs147405456 756 dbSNP
rs777099032 757 dbSNP
rs1403592219 766 dbSNP
rs1225110887 768 dbSNP
rs1270077680 769 dbSNP
rs1490399639 771 dbSNP
rs1365531269 788 dbSNP
rs1340780691 794 dbSNP
rs1197680495 795 dbSNP
rs942870012 797 dbSNP
rs1023684211 798 dbSNP
rs558561271 800 dbSNP
rs991228738 802 dbSNP
rs960776205 807 dbSNP
rs987017004 808 dbSNP
rs1035010870 810 dbSNP
rs999808118 812 dbSNP
rs902748432 815 dbSNP
rs1304680142 816 dbSNP
rs1365999686 817 dbSNP
rs1414227400 819 dbSNP
rs1404152529 825 dbSNP
rs1197393895 827 dbSNP
rs1489823719 832 dbSNP
rs1268106504 842 dbSNP
rs1022488574 843 dbSNP
rs918225446 849 dbSNP
rs1340599178 855 dbSNP
rs1248841242 856 dbSNP
rs1293187225 857 dbSNP
rs1359138140 866 dbSNP
rs1222953162 869 dbSNP
rs1448377199 878 dbSNP
rs1268376241 879 dbSNP
rs972440010 879 dbSNP
rs538242659 886 dbSNP
rs566230871 887 dbSNP
rs1258555648 890 dbSNP
rs1385841306 891 dbSNP
rs1016709118 897 dbSNP
rs777306561 898 dbSNP
rs980342419 900 dbSNP
rs1387340396 914 dbSNP
rs576357167 917 dbSNP
rs969900760 919 dbSNP
rs892886525 928 dbSNP
rs879813724 932 dbSNP
rs1289624117 934 dbSNP
rs1454690470 938 dbSNP
rs1050144592 943 dbSNP
rs931721719 946 dbSNP
rs1382784964 947 dbSNP
rs1242978610 948 dbSNP
rs1262883768 958 dbSNP
rs1352332742 961 dbSNP
rs1014084447 965 dbSNP
rs142783384 967 dbSNP
rs1463143469 972 dbSNP
rs771531172 979 dbSNP
rs1345359608 980 dbSNP
rs1423186494 992 dbSNP
rs72951383 994 dbSNP
rs999561527 1004 dbSNP
rs903916384 1005 dbSNP
rs112513484 1007 dbSNP
rs1388866433 1012 dbSNP
rs1383311276 1016 dbSNP
rs907775472 1018 dbSNP
rs1386795355 1038 dbSNP
rs1470993415 1039 dbSNP
rs984595788 1041 dbSNP
rs942837520 1044 dbSNP
rs889919799 1047 dbSNP
rs1051284372 1049 dbSNP
rs183574382 1055 dbSNP
rs930452523 1061 dbSNP
rs916394907 1064 dbSNP
rs990951504 1073 dbSNP
rs754737359 1074 dbSNP
rs1482862674 1076 dbSNP
rs1314537581 1087 dbSNP
rs1198630690 1089 dbSNP
rs961062518 1097 dbSNP
rs1252641543 1112 dbSNP
rs1419435305 1130 dbSNP
rs536379484 1133 dbSNP
rs1035041869 1134 dbSNP
rs1409943245 1138 dbSNP
rs1480191240 1142 dbSNP
rs4475153 1148 dbSNP
rs966966001 1150 dbSNP
rs918875466 1163 dbSNP
rs1022521032 1176 dbSNP
rs1300397630 1176 dbSNP
rs1259348172 1184 dbSNP
rs1185734422 1191 dbSNP
rs148370666 1193 dbSNP
rs1011494743 1198 dbSNP
rs954276179 1202 dbSNP
rs1283571234 1206 dbSNP
rs1311081159 1209 dbSNP
rs192431622 1210 dbSNP
rs979790502 1227 dbSNP
rs995971352 1228 dbSNP
rs1024066580 1236 dbSNP
rs1249381534 1237 dbSNP
rs766773961 1242 dbSNP
rs1490891267 1248 dbSNP
rs1200376820 1255 dbSNP
rs189831339 1259 dbSNP
rs1431499454 1285 dbSNP
rs1325225225 1297 dbSNP
rs1172707494 1314 dbSNP
rs1295236048 1315 dbSNP
rs1374072656 1317 dbSNP
rs1040037003 1325 dbSNP
rs868473070 1327 dbSNP
rs1167054125 1331 dbSNP
rs956136496 1334 dbSNP
rs1031610858 1339 dbSNP
rs1004469333 1343 dbSNP
rs546431203 1345 dbSNP
rs546223215 1346 dbSNP
rs903887264 1347 dbSNP
rs1307951725 1350 dbSNP
rs1227617253 1351 dbSNP
rs1022720254 1354 dbSNP
rs1361306808 1357 dbSNP
rs1006957468 1359 dbSNP
rs532509529 1360 dbSNP
rs1262547032 1364 dbSNP
rs1448979805 1377 dbSNP
rs371640238 1393 dbSNP
rs1174416457 1400 dbSNP
rs1467475607 1420 dbSNP
rs930545511 1421 dbSNP
rs184928656 1422 dbSNP
rs1164521377 1423 dbSNP
rs1348877386 1424 dbSNP
rs1456082199 1425 dbSNP
rs1051252516 1439 dbSNP
rs1365256458 1442 dbSNP
rs763314849 1448 dbSNP
rs1295301356 1454 dbSNP
rs2298729 1457 dbSNP
rs1228609504 1468 dbSNP
rs2298730 1480 dbSNP
rs1037322642 1494 dbSNP
rs1181412867 1496 dbSNP
rs1261582786 1504 dbSNP
rs1464488583 1505 dbSNP
rs1460620162 1507 dbSNP
rs1256180784 1508 dbSNP
rs928004002 1516 dbSNP
rs761855475 1518 dbSNP
rs552419669 1523 dbSNP
rs1251304476 1524 dbSNP
rs1421294829 1528 dbSNP
rs1228592873 1531 dbSNP
rs1160816928 1532 dbSNP
rs1344813246 1538 dbSNP
rs909508522 1540 dbSNP
rs1456249202 1544 dbSNP
rs1313156371 1558 dbSNP
rs966662851 1561 dbSNP
rs1408135033 1564 dbSNP
rs1448699516 1569 dbSNP
rs1283343307 1572 dbSNP
rs554785557 1575 dbSNP
rs915243445 1577 dbSNP
rs989783122 1585 dbSNP
rs1383833058 1593 dbSNP
rs534531215 1597 dbSNP
rs1206833484 1605 dbSNP
rs1265101377 1609 dbSNP
rs1028516888 1610 dbSNP
rs1336188200 1611 dbSNP
rs1462122936 1613 dbSNP
rs1389750729 1615 dbSNP
rs1394245630 1622 dbSNP
rs998739902 1624 dbSNP
rs1209996549 1634 dbSNP
rs925311803 1637 dbSNP
rs965783069 1638 dbSNP
rs1167322285 1641 dbSNP
rs1018608107 1643 dbSNP
rs917024149 1644 dbSNP
rs567929173 1649 dbSNP
rs1412164303 1650 dbSNP
rs1472068356 1664 dbSNP
rs1156257667 1668 dbSNP
rs1430141637 1669 dbSNP
rs1391743875 1687 dbSNP
rs1161466766 1689 dbSNP
rs992601301 1698 dbSNP
rs1004584314 1704 dbSNP
rs886137875 1705 dbSNP
rs370081190 1719 dbSNP
rs955937628 1721 dbSNP
rs754269427 1723 dbSNP
rs1444023072 1725 dbSNP
rs1308420996 1733 dbSNP
rs1350047555 1734 dbSNP
rs1226826581 1736 dbSNP
rs1285472278 1742 dbSNP
rs924514998 1743 dbSNP
rs1218786177 1749 dbSNP
rs776746596 1750 dbSNP
rs895031552 1766 dbSNP
rs969058152 1772 dbSNP
rs138739337 1774 dbSNP
rs1251576160 1778 dbSNP
rs939132079 1779 dbSNP
rs928038068 1784 dbSNP
rs1270669432 1787 dbSNP
rs376035160 1788 dbSNP
rs945436156 1790 dbSNP
rs143062763 1792 dbSNP
rs566094587 1794 dbSNP
rs989871222 1795 dbSNP
rs1168943749 1799 dbSNP
rs1369679900 1801 dbSNP
rs552671298 1804 dbSNP
rs768858848 1819 dbSNP
rs1305175305 1825 dbSNP
rs1331969750 1834 dbSNP
rs888706678 1842 dbSNP
rs1273167108 1856 dbSNP
rs1342027319 1857 dbSNP
rs954340057 1862 dbSNP
rs1167380129 1867 dbSNP
rs921488516 1868 dbSNP
rs1286244078 1871 dbSNP
rs1236956680 1872 dbSNP
rs976947437 1878 dbSNP
rs747233952 1880 dbSNP
rs1015704565 1891 dbSNP
rs1451834886 1904 dbSNP
rs983190987 1906 dbSNP
rs950452899 1907 dbSNP
rs1189110480 1908 dbSNP
rs1410305678 1912 dbSNP
rs1427576880 1915 dbSNP
rs1043720803 1916 dbSNP
rs1165245412 1919 dbSNP
rs1391650701 1922 dbSNP
rs1372343081 1927 dbSNP
rs948412808 1936 dbSNP
rs1300987853 1939 dbSNP
rs773958465 1946 dbSNP
rs994881504 1947 dbSNP
rs895069943 1948 dbSNP
rs1033976896 1965 dbSNP
rs770781629 1966 dbSNP
rs149039747 1970 dbSNP
rs1468126009 1971 dbSNP
rs868824809 1974 dbSNP
rs945469185 1979 dbSNP
rs924445315 1982 dbSNP
rs1356561856 1985 dbSNP
rs1362673151 1993 dbSNP
rs979015963 2001 dbSNP
rs1465853456 2022 dbSNP
rs1208883104 2024 dbSNP
rs893861747 2031 dbSNP
rs1182302256 2034 dbSNP
rs1189306058 2038 dbSNP
rs1368869039 2049 dbSNP
rs1053806765 2053 dbSNP
rs932612728 2058 dbSNP
rs1419388197 2063 dbSNP
rs1473826648 2065 dbSNP
rs1161659388 2071 dbSNP
rs1267389747 2075 dbSNP
rs114800764 2077 dbSNP
rs1452607858 2078 dbSNP
rs910496908 2080 dbSNP
rs1203654173 2082 dbSNP
rs1455084096 2083 dbSNP
rs977003898 2089 dbSNP
rs1243142674 2094 dbSNP
rs944279091 2115 dbSNP
rs1282064422 2119 dbSNP
rs1330779785 2121 dbSNP
rs908737011 2126 dbSNP
rs1289003286 2133 dbSNP
rs982889563 2134 dbSNP
rs1473434054 2135 dbSNP
rs1230306851 2137 dbSNP
rs1266964847 2137 dbSNP
rs1352247259 2138 dbSNP
rs2298731 2140 dbSNP
rs34541399 2140 dbSNP
rs397952659 2140 dbSNP
rs1281362913 2141 dbSNP
rs950484058 2141 dbSNP
rs1414385681 2144 dbSNP
rs985457305 2144 dbSNP
rs1473052300 2146 dbSNP
rs1158464945 2154 dbSNP
rs1409809675 2155 dbSNP
rs201478403 2155 dbSNP
rs528458073 2155 dbSNP
rs771533885 2155 dbSNP
rs1435463359 2156 dbSNP
rs1491299047 2156 dbSNP
rs1491403111 2157 dbSNP
rs1228666146 2160 dbSNP
rs954062844 2161 dbSNP
rs1398546928 2163 dbSNP
rs1383811785 2164 dbSNP
rs916521056 2166 dbSNP
rs1256445269 2169 dbSNP
rs992048565 2171 dbSNP
rs572086584 2172 dbSNP
rs1029679152 2174 dbSNP
rs1458421415 2178 dbSNP
rs556180454 2179 dbSNP
rs1483282978 2180 dbSNP
rs1427800892 2185 dbSNP
rs1199391829 2190 dbSNP
rs1434974399 2192 dbSNP
rs1176891502 2193 dbSNP
rs1377505234 2216 dbSNP
rs749140624 2225 dbSNP
rs1465004286 2227 dbSNP
rs1478543283 2234 dbSNP
rs998243612 2238 dbSNP
rs1027781883 2245 dbSNP
rs1409658278 2251 dbSNP
rs961776135 2256 dbSNP
rs548803922 2257 dbSNP
rs1387944881 2258 dbSNP
rs1301384251 2259 dbSNP
rs1330404895 2269 dbSNP
rs530442345 2273 dbSNP
rs1006161112 2277 dbSNP
rs959337917 2282 dbSNP
rs1204259029 2286 dbSNP
rs1446572992 2294 dbSNP
rs888678274 2295 dbSNP
rs116708132 2302 dbSNP
rs1003491331 2304 dbSNP
rs1431556252 2307 dbSNP
rs769902476 2320 dbSNP
rs1261139822 2323 dbSNP
rs1218529247 2325 dbSNP
rs1429510731 2326 dbSNP
rs895451821 2327 dbSNP
rs1352351471 2331 dbSNP
rs1459147340 2344 dbSNP
rs906433113 2349 dbSNP
rs1020820403 2361 dbSNP
rs747650253 2380 dbSNP
rs1299725623 2395 dbSNP
rs1428392889 2400 dbSNP
rs893900309 2410 dbSNP
rs1365844585 2422 dbSNP
rs1227322668 2437 dbSNP
rs1295159989 2439 dbSNP
rs1320884046 2441 dbSNP
rs548187709 2442 dbSNP
rs1222545148 2447 dbSNP
rs1265137709 2452 dbSNP
rs1487541276 2455 dbSNP
rs569543799 2456 dbSNP
rs192926154 2461 dbSNP
rs780918967 2466 dbSNP
rs1415487003 2467 dbSNP
rs1416364764 2472 dbSNP
rs879111095 2480 dbSNP
rs1041002951 2488 dbSNP
rs754614577 2501 dbSNP
rs751274609 2502 dbSNP
rs529863745 2512 dbSNP
rs1165020892 2515 dbSNP
rs1349011950 2519 dbSNP
rs1475323990 2519 dbSNP
rs1321990116 2530 dbSNP
rs902961495 2536 dbSNP
rs1434322058 2540 dbSNP
rs750980799 2540 dbSNP
rs1228735908 2548 dbSNP
rs1381047422 2548 dbSNP
rs1207542437 2555 dbSNP
rs1332971431 2556 dbSNP
rs1460172598 2561 dbSNP
rs947248658 2563 dbSNP
rs1464529800 2565 dbSNP
rs1210932873 2573 dbSNP
rs1312637832 2587 dbSNP
rs1483780766 2591 dbSNP
rs1181641985 2593 dbSNP
rs1280736343 2593 dbSNP
rs944311457 2605 dbSNP
rs908769904 2610 dbSNP
rs1412547242 2613 dbSNP
rs1474035088 2617 dbSNP
rs1160689927 2618 dbSNP
rs982920517 2620 dbSNP
rs910465779 2624 dbSNP
rs137887022 2629 dbSNP
rs920104681 2631 dbSNP
rs1448401951 2634 dbSNP
rs560501991 2636 dbSNP
rs1297838205 2638 dbSNP
rs973595929 2640 dbSNP
rs1353749592 2641 dbSNP
rs187352326 2643 dbSNP
rs1411862631 2647 dbSNP
rs1436780033 2649 dbSNP
rs1328554854 2652 dbSNP
rs1222201967 2656 dbSNP
rs1281260619 2674 dbSNP
rs1313308059 2687 dbSNP
rs1380139892 2693 dbSNP
rs530257438 2694 dbSNP
rs1209794064 2700 dbSNP
rs1236119891 2703 dbSNP
rs959139500 2704 dbSNP
rs1301682801 2713 dbSNP
rs1448205128 2718 dbSNP
rs926300510 2719 dbSNP
rs1252168301 2722 dbSNP
rs1327489884 2725 dbSNP
rs933229621 2726 dbSNP
rs981752444 2729 dbSNP
rs758753961 2730 dbSNP
rs970647939 2742 dbSNP
rs1391123211 2746 dbSNP
rs1414999593 2760 dbSNP
rs560316689 2776 dbSNP
rs1020851193 2777 dbSNP
rs977168297 2778 dbSNP
rs961468821 2782 dbSNP
rs1009407917 2783 dbSNP
rs1016115294 2784 dbSNP
rs559479071 2787 dbSNP
rs1440037761 2795 dbSNP
rs1276711002 2796 dbSNP
rs1442949617 2800 dbSNP
rs1368869872 2804 dbSNP
rs1219126758 2807 dbSNP
rs1032161406 2813 dbSNP
rs952915861 2817 dbSNP
rs1206408186 2831 dbSNP
rs1274836627 2833 dbSNP
rs1384856341 2835 dbSNP
rs997361096 2848 dbSNP
rs1023097060 2851 dbSNP
rs1190535078 2862 dbSNP
rs377265348 2863 dbSNP
rs1393262092 2865 dbSNP
rs1182517914 2868 dbSNP
rs1431331427 2872 dbSNP
rs899888487 2873 dbSNP
rs544397148 2884 dbSNP
rs373140625 2885 dbSNP
rs765758545 2890 dbSNP
rs1325824853 2893 dbSNP
rs1408461413 2893 dbSNP
rs1350520163 2915 dbSNP
rs750937493 2916 dbSNP
rs1301878329 2932 dbSNP
rs1367985114 2934 dbSNP
rs1041036966 2935 dbSNP
rs896085726 2940 dbSNP
rs1035350015 2954 dbSNP
rs1193691732 2958 dbSNP
rs1008149339 2961 dbSNP
rs150281250 2962 dbSNP
rs767616197 2964 dbSNP
rs1188921571 2968 dbSNP
rs1451277541 2968 dbSNP
rs544874119 2990 dbSNP
rs1356817659 2997 dbSNP
rs572779132 2998 dbSNP
rs1474332509 3002 dbSNP
rs1165209157 3005 dbSNP
rs1414882353 3012 dbSNP
rs72951377 3015 dbSNP
rs1323989840 3021 dbSNP
rs920118341 3022 dbSNP
rs1055949782 3024 dbSNP
rs1436509181 3031 dbSNP
rs1380760050 3033 dbSNP
rs937779659 3034 dbSNP
rs926334638 3038 dbSNP
rs1247524316 3040 dbSNP
rs764171775 3046 dbSNP
rs1285518981 3058 dbSNP
rs888914821 3059 dbSNP
rs1050271224 3064 dbSNP
rs970343658 3084 dbSNP
rs535861983 3085 dbSNP
rs1261025693 3088 dbSNP
rs573684127 3091 dbSNP
rs1369214627 3103 dbSNP
rs988490860 3117 dbSNP
rs923211126 3119 dbSNP
rs1409696828 3126 dbSNP
rs957959608 3132 dbSNP
rs541652591 3142 dbSNP
rs760837583 3145 dbSNP
rs1032606096 3153 dbSNP
rs1159066460 3163 dbSNP
rs996662809 3163 dbSNP
rs1398091208 3164 dbSNP
rs908615644 3165 dbSNP
rs1423209652 3174 dbSNP
rs1340661596 3180 dbSNP
rs183103596 3183 dbSNP
rs1413754856 3189 dbSNP
rs1349506912 3192 dbSNP
rs1330587491 3193 dbSNP
rs1165813230 3194 dbSNP
rs577317703 3200 dbSNP
rs1019616289 3210 dbSNP
rs952800445 3214 dbSNP
rs1405835568 3219 dbSNP
rs1008262454 3222 dbSNP
rs1181581550 3223 dbSNP
rs1201917804 3228 dbSNP
rs1256638006 3229 dbSNP
rs1023066023 3230 dbSNP
rs991646324 3239 dbSNP
rs1252534802 3242 dbSNP
rs887144593 3247 dbSNP
rs1254321592 3248 dbSNP
rs1047038889 3252 dbSNP
rs538449778 3253 dbSNP
rs1439067402 3254 dbSNP
rs1489812333 3259 dbSNP
rs1362514394 3260 dbSNP
rs996184781 3280 dbSNP
rs898724518 3293 dbSNP
rs1173714810 3295 dbSNP
rs998523190 3297 dbSNP
rs967412692 3300 dbSNP
rs1351956069 3307 dbSNP
rs1056382641 3313 dbSNP
rs3554 3314 dbSNP
rs926364306 3340 dbSNP
rs552784758 3341 dbSNP
rs762787630 3344 dbSNP
rs1227254107 3348 dbSNP
rs1256573747 3350 dbSNP
rs1346873089 3353 dbSNP
rs949100665 3357 dbSNP
rs913592053 3359 dbSNP
rs1276962225 3360 dbSNP
rs1290816405 3361 dbSNP
rs1483516970 3373 dbSNP
rs987799197 3384 dbSNP
rs936595868 3385 dbSNP
rs1367396391 3397 dbSNP
rs772940022 3401 dbSNP
rs975655444 3410 dbSNP
rs1452892922 3411 dbSNP
rs1459595350 3412 dbSNP
rs1343667518 3418 dbSNP
rs1371972973 3419 dbSNP
rs1462209308 3422 dbSNP
rs963884358 3430 dbSNP
rs1297297431 3434 dbSNP
rs769851284 3436 dbSNP
rs1259419608 3443 dbSNP
rs1388073577 3444 dbSNP
rs901759011 3447 dbSNP
rs986876194 3457 dbSNP
rs1184307650 3461 dbSNP
rs1431397634 3462 dbSNP
rs1266344196 3466 dbSNP
rs1191567522 3469 dbSNP
rs1489221282 3470 dbSNP
rs1231737870 3482 dbSNP
rs751840847 3500 dbSNP
rs940626580 3500 dbSNP
rs1204067620 3501 dbSNP
rs951450846 3504 dbSNP
rs192477980 3507 dbSNP
rs115854374 3514 dbSNP
rs544059935 3519 dbSNP
rs1467544291 3531 dbSNP
rs1190867356 3532 dbSNP
rs1270543930 3535 dbSNP
rs1391142425 3536 dbSNP
rs1428346521 3538 dbSNP
rs995494009 3542 dbSNP
rs547066610 3543 dbSNP
rs1370985080 3544 dbSNP
rs1034569989 3558 dbSNP
rs931384909 3560 dbSNP
rs1438585194 3562 dbSNP
rs748103846 3564 dbSNP
rs1362382701 3568 dbSNP
rs916019018 3569 dbSNP
rs991615029 3570 dbSNP
rs1323746817 3571 dbSNP
rs1245553068 3575 dbSNP
rs1312145468 3584 dbSNP
rs1302346815 3586 dbSNP
rs1332825175 3588 dbSNP
rs1211106282 3592 dbSNP
rs751709321 3600 dbSNP
rs529993445 3605 dbSNP
rs561440781 3606 dbSNP
rs558641227 3608 dbSNP
rs928826625 3609 dbSNP
rs907397145 3611 dbSNP
rs1045912129 3613 dbSNP
rs1320198227 3617 dbSNP
rs1435863192 3619 dbSNP
rs978036309 3620 dbSNP
rs1390871617 3621 dbSNP
rs1286925234 3622 dbSNP
rs1294989389 3622 dbSNP
rs34418669 3622 dbSNP
rs397994801 3622 dbSNP
rs70961976 3622 dbSNP
rs972510173 3622 dbSNP
rs967672291 3624 dbSNP
rs1292964074 3625 dbSNP
rs1332756651 3630 dbSNP
rs1285494631 3632 dbSNP
rs1174394992 3647 dbSNP
rs1464427920 3659 dbSNP
rs949131620 3662 dbSNP
rs1214039041 3670 dbSNP
rs550760951 3675 dbSNP
rs1483811041 3677 dbSNP
rs892188992 3680 dbSNP
rs1256450260 3681 dbSNP
rs1473901818 3691 dbSNP
rs1183735356 3699 dbSNP
rs1408565140 3700 dbSNP
rs188012705 3706 dbSNP
rs1400078349 3707 dbSNP
rs1245795637 3714 dbSNP
rs1187587664 3719 dbSNP
rs182852731 3732 dbSNP
rs953092027 3739 dbSNP
rs1465094209 3747 dbSNP
rs867494063 3761 dbSNP
rs374926484 3770 dbSNP
rs1353808306 3771 dbSNP
rs544788608 3776 dbSNP
rs924937455 3779 dbSNP
rs1280239319 3794 dbSNP
rs1372745416 3795 dbSNP
rs1222541273 3800 dbSNP
rs776405590 3801 dbSNP
rs1349043496 3802 dbSNP
rs975388694 3803 dbSNP
rs113875018 3812 dbSNP
rs942608822 3814 dbSNP
rs1279093541 3817 dbSNP
rs1257156387 3821 dbSNP
rs912420201 3825 dbSNP
rs1036202345 3834 dbSNP
rs1005184594 3843 dbSNP
rs887714433 3850 dbSNP
rs1175402829 3853 dbSNP
rs542239864 3853 dbSNP
rs559218679 3854 dbSNP
rs1062017 3861 dbSNP
rs1172800890 3869 dbSNP
rs1229348012 3870 dbSNP
rs915987692 3879 dbSNP
rs141425273 3880 dbSNP
rs780794205 3887 dbSNP
rs1395597326 3888 dbSNP
rs1353996618 3894 dbSNP
rs573523406 3895 dbSNP
rs1401399073 3900 dbSNP
rs1440196975 3901 dbSNP
rs557042954 3902 dbSNP
rs1303411120 3905 dbSNP
rs1055770348 3909 dbSNP
rs1467365119 3912 dbSNP
rs1388047465 3913 dbSNP
rs1167753984 3928 dbSNP
rs1301740651 3928 dbSNP
rs1215942164 3929 dbSNP
rs1392334040 3929 dbSNP
rs397822167 3929 dbSNP
rs58612873 3929 dbSNP
rs1419078252 3930 dbSNP
rs962477413 3930 dbSNP
rs928770369 3931 dbSNP
rs1325635772 3937 dbSNP
rs1395808297 3939 dbSNP
rs1440780190 3939 dbSNP
rs977628703 3954 dbSNP
rs951479267 3957 dbSNP
rs1025695830 3959 dbSNP
rs974484248 3969 dbSNP
rs962784058 3985 dbSNP
rs146623057 4009 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000394767.2 | 3UTR | UCAAGAAAAACUCAUG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE42095 Differentiated embryonic stem cells -0.492 8.5e-3 -0.349 5.1e-2 23 Click to see details
GSE28260 Renal cortex and medulla -0.552 2.5e-2 -0.625 1.1e-2 13 Click to see details
GSE27834 Pluripotent stem cells -0.454 3.9e-2 -0.371 7.9e-2 16 Click to see details
GSE28544 Breast cancer 0.303 7.5e-2 0.234 1.4e-1 24 Click to see details
GSE19350 CNS germ cell tumors -0.414 9.0e-2 -0.427 8.3e-2 12 Click to see details
GSE21032 Prostate cancer 0.119 1.4e-1 0.142 1.0e-1 83 Click to see details
GSE38226 Liver fibrosis -0.232 1.6e-1 -0.282 1.1e-1 21 Click to see details
GSE19536 Breast cancer -0.086 2.0e-1 -0.035 3.6e-1 100 Click to see details
GSE19783 ER- ER- breast cancer -0.088 2.2e-1 -0.003 4.9e-1 79 Click to see details
GSE21849 B cell lymphoma -0.119 2.7e-1 0.208 1.4e-1 29 Click to see details
GSE21687 Ependynoma primary tumors -0.077 2.7e-1 -0.038 3.8e-1 64 Click to see details
GSE32688 Pancreatic cancer -0.099 2.9e-1 -0.068 3.6e-1 32 Click to see details
GSE17306 Multiple myeloma -0.073 3.1e-1 -0.027 4.3e-1 49 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.115 3.1e-1 -0.283 1.1e-1 20 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.097 3.2e-1 0.008 4.8e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.099 3.4e-1 -0.059 4.0e-1 20 Click to see details
GSE26953 Aortic valvular endothelial cells -0.084 3.5e-1 -0.100 3.2e-1 24 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.044 4.2e-1 0.357 4.0e-2 25 Click to see details
GSE14794 Lymphoblastoid cells -0.012 4.6e-1 0.017 4.4e-1 90 Click to see details
GSE17498 Multiple myeloma -0.006 4.9e-1 -0.042 4.0e-1 40 Click to see details
GSE17498 Multiple myeloma -0.006 4.9e-1 -0.042 4.0e-1 40 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.348 0.07 -0.315 0.09 20 Click to see details
LIHC 0.523 0.07 0.633 0.03 9 Click to see details
UCEC 0.729 0.14 0.800 0.1 4 Click to see details
BRCA -0.089 0.26 -0.089 0.26 56 Click to see details
STAD -0.313 0.3 -0.100 0.44 5 Click to see details
BLCA -0.197 0.32 -0.214 0.31 8 Click to see details
LUSC -0.126 0.37 -0.033 0.47 9 Click to see details
THCA 0.075 0.39 -0.250 0.18 16 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
PRAD -0.083 0.39 -0.005 0.49 13 Click to see details
234 hsa-miR-526b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT382022 FAM49B family with sequence similarity 49 member B 2 2
MIRT442559 CAB39 calcium binding protein 39 2 2
MIRT443783 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443886 CNKSR3 CNKSR family member 3 2 2
MIRT443970 SSH2 slingshot protein phosphatase 2 2 2
MIRT444050 PROX2 prospero homeobox 2 2 2
MIRT444128 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444144 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT444171 RBM7 RNA binding motif protein 7 2 2
MIRT444185 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT444217 METTL12 methyltransferase like 12 2 2
MIRT444474 WNT5A Wnt family member 5A 2 2
MIRT444582 GPR89B G protein-coupled receptor 89B 2 2
MIRT444659 TSPAN14 tetraspanin 14 2 2
MIRT444755 LUZP1 leucine zipper protein 1 2 2
MIRT444768 ZNF90 zinc finger protein 90 2 2
MIRT444862 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT444904 KIAA1841 KIAA1841 2 2
MIRT444941 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT444966 CDH7 cadherin 7 2 2
MIRT445008 TMEM106B transmembrane protein 106B 2 2
MIRT445014 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445036 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT445045 PURB purine rich element binding protein B 2 2
MIRT445075 CXXC4 CXXC finger protein 4 2 2
MIRT445148 KLHL23 kelch like family member 23 2 2
MIRT445228 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT445258 C9orf66 chromosome 9 open reading frame 66 2 2
MIRT445263 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT445413 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT445431 ESD esterase D 2 2
MIRT445475 KDM6A lysine demethylase 6A 2 2
MIRT445618 CLIC4 chloride intracellular channel 4 2 2
MIRT445709 RBL1 RB transcriptional corepressor like 1 2 2
MIRT445736 ITM2A integral membrane protein 2A 2 2
MIRT445787 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445796 IFIT1 interferon induced protein with tetratricopeptide repeats 1 2 2
MIRT445801 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT445805 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT445814 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT445861 ZNF451 zinc finger protein 451 2 2
MIRT445871 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445964 IKZF5 IKAROS family zinc finger 5 2 2
MIRT445974 TSPYL1 TSPY like 1 2 2
MIRT446013 VNN1 vanin 1 2 2
MIRT446021 HBS1L HBS1 like translational GTPase 2 2
MIRT446080 RCOR3 REST corepressor 3 2 2
MIRT446084 SLC30A10 solute carrier family 30 member 10 2 2
MIRT446102 TSC22D2 TSC22 domain family member 2 2 2
MIRT446174 ZNF37A zinc finger protein 37A 2 2
MIRT446185 FGF1 fibroblast growth factor 1 2 2
MIRT446197 GTPBP4 GTP binding protein 4 2 2
MIRT446212 SLC25A44 solute carrier family 25 member 44 2 2
MIRT446229 C17orf80 chromosome 17 open reading frame 80 2 2
MIRT446311 TBC1D8B TBC1 domain family member 8B 2 2
MIRT446362 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT446383 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446411 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446535 GOLGA8B golgin A8 family member B 2 2
MIRT446544 ASTN2 astrotactin 2 2 2
MIRT446563 IDS iduronate 2-sulfatase 2 2
MIRT446569 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT446596 AKAP1 A-kinase anchoring protein 1 2 2
MIRT446703 FUT10 fucosyltransferase 10 2 2
MIRT446778 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT446782 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT446787 KIF1C kinesin family member 1C 2 2
MIRT446795 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT446801 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT446841 FOXP1 forkhead box P1 2 2
MIRT446848 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT446865 NBPF3 NBPF member 3 2 2
MIRT446883 TRIM25 tripartite motif containing 25 2 2
MIRT446904 RGS5 regulator of G protein signaling 5 2 2
MIRT446910 GPR89A G protein-coupled receptor 89A 2 2
MIRT446931 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT446942 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446976 SUSD5 sushi domain containing 5 2 2
MIRT447005 RSF1 remodeling and spacing factor 1 2 2
MIRT447027 TACR3 tachykinin receptor 3 2 2
MIRT447037 ZNF439 zinc finger protein 439 2 2
MIRT447050 STARD5 StAR related lipid transfer domain containing 5 2 2
MIRT447056 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447145 HHIP hedgehog interacting protein 2 2
MIRT447152 PRSS12 protease, serine 12 2 2
MIRT447179 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447198 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2 2
MIRT447210 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447238 IHH indian hedgehog 2 2
MIRT447271 FZD5 frizzled class receptor 5 2 2
MIRT447322 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447390 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT447409 MED21 mediator complex subunit 21 2 2
MIRT447478 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT447549 C14orf37 chromosome 14 open reading frame 37 2 2
MIRT447628 NDST4 N-deacetylase and N-sulfotransferase 4 2 2
MIRT447645 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT447694 OGN osteoglycin 2 2
MIRT447733 MOCOS molybdenum cofactor sulfurase 2 2
MIRT447739 C12orf4 chromosome 12 open reading frame 4 2 2
MIRT447868 TRNT1 tRNA nucleotidyl transferase 1 2 2
MIRT447979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT447992 CDX1 caudal type homeobox 1 2 2
MIRT448067 SLC25A43 solute carrier family 25 member 43 2 2
MIRT448113 SEMA4G semaphorin 4G 2 2
MIRT448129 CCDC80 coiled-coil domain containing 80 2 2
MIRT448171 ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 2 2
MIRT448299 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT448447 SMC3 structural maintenance of chromosomes 3 2 2
MIRT448467 SLC45A4 solute carrier family 45 member 4 2 2
MIRT448472 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT448481 SEMA4F ssemaphorin 4F 2 2
MIRT448747 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448765 GOLGA8A golgin A8 family member A 2 2
MIRT448830 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT448852 FEM1C fem-1 homolog C 2 2
MIRT448899 CLOCK clock circadian regulator 2 2
MIRT448905 CLCN6 chloride voltage-gated channel 6 2 4
MIRT448951 CDK19 cyclin dependent kinase 19 2 2
MIRT448974 CADM2 cell adhesion molecule 2 2 2
MIRT449021 AMER2 APC membrane recruitment protein 2 2 2
MIRT449053 NUDT3 nudix hydrolase 3 2 2
MIRT449065 ZNF24 zinc finger protein 24 2 2
MIRT449069 CNDP2 carnosine dipeptidase 2 2 2
MIRT449120 XRRA1 X-ray radiation resistance associated 1 2 2
MIRT449177 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT449304 PARP3 poly(ADP-ribose) polymerase family member 3 2 2
MIRT449319 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449345 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT449424 GPR75 G protein-coupled receptor 75 2 2
MIRT449440 STAMBP STAM binding protein 2 2
MIRT449474 ZNF84 zinc finger protein 84 2 2
MIRT449504 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449599 INIP INTS3 and NABP interacting protein 2 4
MIRT449611 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT449630 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT449654 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT449679 CDR1 cerebellar degeneration related protein 1 2 2
MIRT449730 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT449777 NUDT16 nudix hydrolase 16 2 2
MIRT449826 TLR4 toll like receptor 4 2 2
MIRT449832 AGK acylglycerol kinase 2 2
MIRT449855 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT449927 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT450126 NSUN3 NOP2/Sun RNA methyltransferase family member 3 2 2
MIRT450202 ABHD15 abhydrolase domain containing 15 2 2
MIRT450243 TRIM66 tripartite motif containing 66 2 2
MIRT450268 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450337 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450341 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT450344 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT450374 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT450408 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT450427 CPOX coproporphyrinogen oxidase 2 2
MIRT450451 ZDHHC2 zinc finger DHHC-type containing 2 2 2
MIRT450463 ENOX1 ecto-NOX disulfide-thiol exchanger 1 2 2
MIRT450527 PGLS 6-phosphogluconolactonase 2 2
MIRT450540 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450631 ZNF654 zinc finger protein 654 2 2
MIRT450652 TMEM70 transmembrane protein 70 2 2
MIRT450670 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT450685 RPN2 ribophorin II 2 2
MIRT450707 RNF152 ring finger protein 152 2 2
MIRT450765 PPAPDC2 phospholipid phosphatase 6 2 2
MIRT450812 LIFR LIF receptor alpha 2 2
MIRT450867 GPR107 G protein-coupled receptor 107 2 2
MIRT464938 TXLNA taxilin alpha 2 4
MIRT472332 NETO2 neuropilin and tolloid like 2 2 2
MIRT478672 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT485664 CDC25B cell division cycle 25B 2 2
MIRT497300 CD300LB CD300 molecule like family member b 2 2
MIRT497587 SLC23A1 solute carrier family 23 member 1 2 2
MIRT497762 KIAA0895 KIAA0895 2 2
MIRT497815 STAT5B signal transducer and activator of transcription 5B 2 2
MIRT497827 GPR26 G protein-coupled receptor 26 2 2
MIRT497855 LGR5 leucine rich repeat containing G protein-coupled receptor 5 2 2
MIRT497975 XBP1P1 X-box binding protein 1 pseudogene 1 2 2
MIRT498178 CREB1 cAMP responsive element binding protein 1 2 2
MIRT498333 PRELID2 PRELI domain containing 2 2 2
MIRT501771 NRBF2 nuclear receptor binding factor 2 2 6
MIRT504823 RAP2A RAP2A, member of RAS oncogene family 2 6
MIRT510498 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT513131 ZNF431 zinc finger protein 431 2 2
MIRT524341 CREBRF CREB3 regulatory factor 2 4
MIRT528236 SPIN4 spindlin family member 4 2 2
MIRT534138 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT535420 PDZD8 PDZ domain containing 8 2 2
MIRT535876 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT540789 TMOD2 tropomodulin 2 2 2
MIRT540925 OIP5 Opa interacting protein 5 2 2
MIRT544028 STAM signal transducing adaptor molecule 2 2
MIRT546027 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT551818 TMEM138 transmembrane protein 138 2 2
MIRT556115 MLEC malectin 2 4
MIRT557669 GATA6 GATA binding protein 6 2 2
MIRT568897 MGRN1 mahogunin ring finger 1 2 2
MIRT573538 MDM2 MDM2 proto-oncogene 2 2
MIRT615473 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT618257 DDX51 DEAD-box helicase 51 2 2
MIRT619905 FAM43B family with sequence similarity 43 member B 2 2
MIRT621109 SP110 SP110 nuclear body protein 2 2
MIRT622331 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622682 PLSCR1 phospholipid scramblase 1 2 2
MIRT624095 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT628661 FAM83C family with sequence similarity 83 member C 2 2
MIRT639259 MANEAL mannosidase endo-alpha like 2 2
MIRT641171 LYPLA1 lysophospholipase I 2 2
MIRT642966 FUT6 fucosyltransferase 6 2 2
MIRT643539 SLC25A17 solute carrier family 25 member 17 2 2
MIRT648679 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649446 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 2 2
MIRT651353 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT651565 WHSC1L1 nuclear receptor binding SET domain protein 3 2 2
MIRT652242 TPPP tubulin polymerization promoting protein 2 2
MIRT653925 SERPINC1 serpin family C member 1 2 2
MIRT654113 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658395 FAM221B family with sequence similarity 221 member B 2 2
MIRT658581 EPHB1 EPH receptor B1 2 2
MIRT660026 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT661405 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT664138 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT665655 TRIM33 tripartite motif containing 33 2 2
MIRT691641 SLC43A3 solute carrier family 43 member 3 2 2
MIRT692708 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693859 IYD iodotyrosine deiodinase 2 2
MIRT702910 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT705052 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705124 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT705534 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT708676 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT709868 A1CF APOBEC1 complementation factor 2 2
MIRT715657 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT716567 DLGAP2 DLG associated protein 2 2 2
MIRT737090 SIK2 salt inducible kinase 2 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-526b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-526b 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-526b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-526b Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-526b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-526b-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, H3122)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-526b-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-526b-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-526b-5p Testosterone+Letrozole sensitive cell line (MCF-7)
hsa-miR-526b-5p Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-526b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (HCT15)
hsa-miR-526b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-526b-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-526b-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

Error report submission