miRTarBase - #MIRT445413


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pre-miRNA Information
pre-miRNA hsa-mir-526b   
Genomic Coordinates chr19: 53694393 - 53694475
Description Homo sapiens miR-526b stem-loop
Comment The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies .
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-526b-5p
Sequence 14| CUCUUGAGGGAAGCACUUUCUGU |36
Evidence Experimental
Experiments Array-cloned
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs527640376 1 dbSNP
rs1397075062 2 dbSNP
rs1462454250 5 dbSNP
rs774071640 7 dbSNP
rs1329470722 12 dbSNP
rs1471427006 13 dbSNP
rs375077514 15 dbSNP
rs1280430663 16 dbSNP
rs370046048 19 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ACSL6   
Synonyms ACS2, FACL6, LACS 6, LACS2, LACS5
Description acyl-CoA synthetase long chain family member 6
Transcript NM_001009185   
Other Transcripts NM_015256   
Expression
Putative miRNA Targets on ACSL6
3'UTR of ACSL6
(miRNA target sites are highlighted)		 
>ACSL6|NM_001009185|3'UTR
   1 AGTTCAAGGAAAGTTCTTCTCAGTGTAATGAACTGTCTAGCAATATTATAGTTATTCTTGAAAGTAATGAGTCAAAATGA
  81 CACAGCTGAAAATGAATAAGCATCTGATTTTATGACTGAGCCTTTTCCTGTCCCAAGAGGTCTTTAACAATATTTTCTCT
 161 ATCATCAATGAGTATATTTTATTTTTATTATAAAAATGATATTGTGGTGGACTGCTAAAAATATCACAAATGGCAATGTA
 241 AAAATCAAGACATTTTCTCAAGAACTGTGTACCACTAAAAGTAATATATTGTCAATGTTCACAGAACTATTAAACATAAA
 321 GGAAAAACATAAGTGATATATTCTACTTAATTATTTGTGAATCAGTAACCAGATGCAGCAAATATCTAGGCAATGTGGAC
 401 TACCTCATTCAGTAACTGATTGTCAAAATCACAATTAAATCAGACTTCAAAAATTAAAGCTAGGTGTATAGAATCATGCT
 481 AAAAGAAAACATGATAACTCATAGTCTACGTAACTTCAGAGTCTTTAAACATGACAATCCACATTGTCATATGTGAAAAT
 561 TTTCTCTCTGATTTTTACTTTCATTCATGAAAAATGAAAATTCAGAAATTCTTTTTTTCCTTTTTGTTTTGAGACAGGGT
 641 CTGCTCTGTCACCTAGGCTGGAGTGCAGTGGCTTAATCATGGCTCATTGCAGTCTCCATCTCCTGGGCTCGAGTGATCCT
 721 CCTGTCTCACCTCCCAAGTAGCTGAGACTACAGTACAGGCACATGCCACCACACCTGGCTAATAGAAATTTTTTTTTTAG
 801 AGATTTTGCTCAGGCTGGTCTCAAACTCCTGAGCTCAAGGGATCCTCCCGCCTTGGCCTCCCTAAGTGCTAGGATTACAG
 881 GCATGAGCCATTGTTCCCAGCCAAATTCAGATATTATTAAAACACATGTCATATTTATATAGTAACTTACAAAGACCTTT
 961 CAATACATTTTCTCATTTATTAAGCTCATTAAAGTATTCAGGAACTACCTAGAAAAAATATAATGTAAAACTATTCAAGG
1041 ATAGTGTGTGTATGTTCATGGACTTCTTATTATAATGAATTCTAAAAGACATCTGTTGACTCTACAATGAATGGATCCTT
1121 GAGGAATACTTGGGAGAAGAAACTCAGAGTTATTTCTCAGGGTAGGCAGCAATTAATGTACCTACATTCCTTGCTGGGGT
1201 CTTCTAGTCTTCCATTCCCAATGTGCCCATGCTATGCCTGGAAACCCTATATGGTTGTAATTCTGAACAATTTCACTTTT
1281 TTTCCAGTAAGAATATCAAGGCAGAAGGTGGGAAGGAGGGGACATTATTTCCAGGGAAAATAGTTTTTCAACAATATAAC
1361 TTTGATAAACCTCTTTAAAATGCCCCAAGAAAACTTTTTAAGTCCATAGACAAAGAAATACTGCCTAATGGCATAATTAC
1441 ATTCCTAAAATCTTTAAGCGTGCCGAAGTTTAACCACTAAAACCTCCTTTCTTGCATTATGTATTTAGATGCACCCTGTA
1521 TTGGGGTGTCAACAATTTCTTATAATTAAAGGCCAGATACCATGGACAGCAATTAAGTTCCAAGCTATAGATTGTGCCTC
1601 TGAAAAAGGCATGGACCCCAGGAACGTGTTTTTCTTCTGTAGAGACAAGACTCTAAAAGCATATCAACAATCCATATGCA
1681 ATTCATGTGTTAATTTAAAATGTATGTGCTCAGTGTTTGTAGTCTAGAAGCTCCTTTCCCTTGGAGGAATGCCAAGCAGT
1761 TTGCAAAAATAAATGCTGTTAGTTAAAAACCACATAATCACATGGGCCTACTGAATAAATATGCATCAGTGATTATATAC
1841 TTATATTTCAGTCTTGTCAAAAGTGAATCACTGTTTCATTTGATGTATTTACCCAGTCTTTTTATCCAGTTTTTCTTGGG
1921 CATATTCTCTCTGAAGACCCACTGTTGCACTTCTAAATTTGACAGTTAAGAAATGAGCTAGTTCTATACACACTGATTTT
2001 TAAAGGCGTTTCTGAATAAACTAATACTTAAAATGTCCAAAGTCACATCTGTACAGCATTAGATTTTTATATTTAATATA
2081 TATTTGACTAATTAAAAGTGAAAGTTGTTACCTGAACTGGATATTCATACTATTTTAAGGGCAAGTTGCTTACATTTCAA
2161 TAACAACAAAAAAAGAATCTGTTTCCCATTGTCCTCCTACTCAACTAAAATTCATAGTTGGCTTTAAGCCCAAAAGAATT
2241 TTGAACAATGTGACAGAAACAAGTAATGTAAAACTTATTTTGTTTTATTTATACTTTATAATAGTTAGATATAACAGATT
2321 ATGGACAACTTAATATTTCTTCTTTTTGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGC
2401 GGGCAGATCACGAAGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAAAATACAAAAA
2481 ATTAGCCGGGCGTTGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAG
2561 GCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGTACTCCAGCCTGGGCAACAGAACGAGACTCCGTCTCAAAAAGAAAG
2641 AAAAAAAAAAAACAAAAACAAGGTTTCTTCTTTTTGCCACTTAAAATATCTTATATTTCTAGATTTCCAGGTCTATGTGG
2721 AAATCATCACACTTGGGCCAATAAATGGGTTAGTTCAGATGTGCTGAGAAAAGTAAATAGTGTACCCTAAATATCTTGCA
2801 TGTACATTTATCTATTTCTCTGTTTAATGCCACTTAATTTTGTAAGAAATGAGAAATGAAACCCTATGTATCAGTGGAAA
2881 AATCCTTCTTGCTTCAGATTTCCCAACTTTATTCTGGAGGAGAAAAAAATCTGTATTTCTCATTAACAGAGATAGAAAAA
2961 GGTGATGTACTTACGATGGTCACATTCATATTGGGCATTGGATCTATTTAAGCCTAGAAGTATAACAGATAATCAGTTCC
3041 TTAAGTGTAAATATGTTCTTAAATGTTTGGCCTTTTTATCTGTTATTCAAATGTATTAGTAATTCTCATATTTTGCAAAC
3121 AGATCCTTTTGTGTATATTATAAAATATATACCAAATCTGTTTTTCCTTTTGCTGTGGAAGATGTCTTTATATAATATTG
3201 AGACTTCCCTTGCAAATGAGAGACGGGACTCTGGTCAGGTATAGTGTGTAGGCCTAGCCCCATGTATTAGGAACTCATAA
3281 ACTCAGAAATCCAAGGATTAAACATTTTATGTCTCCTTCATTTATGCAAGTCATGCTTTCATTCTACATGTAGTTAAAAC
3361 TACAAGTATGAGAAAAAATAGAACTTTCCATTGGAATTTTTTCCAATCAGGTAATGTTTTAGCAACTTGAAATCAGCACT
3441 TAATTTGATTGTATTACCTATCAAAGAACCAATAACCTTTCCTTTTTCTGCAGTAAAGAAAATGAAATATCCTTTATTTT
3521 CCAAATGTATGAAGCACAAATGCAATATAGTTATTTAAAATATAAAATACTTTAAAATGAATGTGAAGAATGGGAAAATA
3601 TATTTTTGCATGAAAACAGACTACTTACAAATGTGCTTAATATCTCAGGAAAAAAAGAATGAATAACCGTATATAAAATT
3681 GGTAAACTATAAATTGGCTGTATTTCCTTGCCGGTTTTAATTTTAAGGAAGCATTTACATGAAAAGAAAAAAGGATCCTA
3761 GTAGTCTGAATTTCCTCTCAAGTATGCTAGAAAATACTTTCTATGAATTTACAATTAACTGCAATAAGAAGTGGGTTAGC
3841 ATTCAAGTAAGGTCAATACCCCAAATGAGAAACTCTTCAGTTAGAACACATTAGTGGTTGTAACACAGAGGCAGTAGATA
3921 AATATTTGAAATGTGAGCATTTCTAAACTTGGTACCAAATGGAAAGGGTTTCATGAGGTGACAGTGGCTTTTAAACATTC
4001 ATTTGACCGATTATTCTAATTTTCCTTGTTAAATCATTGCAACAGTTGCATGGGGGAGAATGGATATTTTTTGAAGAATT
4081 GCTTATTCCACTTTCAATTTTTAAAAATCGAGGGGATTAAAATATTACTTTTTAAATATGCATAAAAGTATCTTAACTGT
4161 AATTACATTTTCAGTTGCTTTGTTATAGTAGCATGCATATTAAATATAAAATGCATTTATGAAAATTTTTGTAAAAAATA
4241 AAAGATTTTTCATTTCTCAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' ugucuUUCACGAAGGGAGUUCUc 5'
               |||   ||::||||||| 
Target 5' aaatcAAGACATTTTCTCAAGAa 3'
 242 - 264 158.00 -11.90
2 
miRNA  3' ugUCUUU-CACGA---AGGGAGUUCUc 5'
            | ||| |||||   | :||||:|| 
Target 5' ttACAAATGTGCTTAATATCTCAGGAa 3'
 3625 - 3651 149.00 -16.70
3 
miRNA  3' ugucUUUCACGAAGGGAGUUCUc 5'
              ||| | ||   ||||||: 
Target 5' tctcAAACTCCTGAGCTCAAGGg 3'
 819 - 841 139.00 -12.00
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN28889377 1 COSMIC
COSN30512871 21 COSMIC
COSN30106265 22 COSMIC
COSN30123663 30 COSMIC
COSN18806424 34 COSMIC
COSN28865393 58 COSMIC
COSN2070395 88 COSMIC
COSN31486274 418 COSMIC
COSN4843494 618 COSMIC
COSN8203172 640 COSMIC
COSN2070394 831 COSMIC
COSN21289237 1315 COSMIC
COSN21102247 1646 COSMIC
COSN21625313 2166 COSMIC
COSN26291775 2491 COSMIC
COSN15165178 3184 COSMIC
COSN6863367 3194 COSMIC
COSN5589371 3291 COSMIC
COSN2070392 3556 COSMIC
COSN28201072 4001 COSMIC
COSN22679193 4109 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs975473421 9 dbSNP
rs753006472 10 dbSNP
rs1216933555 18 dbSNP
rs752420425 19 dbSNP
rs1489957780 21 dbSNP
rs965411735 22 dbSNP
rs1229357144 25 dbSNP
rs765686500 36 dbSNP
rs78943578 48 dbSNP
rs374099994 49 dbSNP
rs1277099048 50 dbSNP
rs188715193 56 dbSNP
rs956916977 57 dbSNP
rs77928235 67 dbSNP
rs1188674928 68 dbSNP
rs1032626610 72 dbSNP
rs1238904004 78 dbSNP
rs1474191147 82 dbSNP
rs541574978 83 dbSNP
rs905362776 86 dbSNP
rs1467137968 87 dbSNP
rs1174245304 100 dbSNP
rs1401372417 102 dbSNP
rs1389337069 105 dbSNP
rs1045233442 117 dbSNP
rs1013353251 135 dbSNP
rs1414894017 137 dbSNP
rs183986296 140 dbSNP
rs928252698 165 dbSNP
rs1036096747 166 dbSNP
rs1387443713 169 dbSNP
rs796223199 172 dbSNP
rs555332897 178 dbSNP
rs11557375 181 dbSNP
rs11557377 187 dbSNP
rs1341263417 189 dbSNP
rs758339602 191 dbSNP
rs1220513492 200 dbSNP
rs1025375166 203 dbSNP
rs752831381 206 dbSNP
rs191609043 209 dbSNP
rs931854268 211 dbSNP
rs1180513662 226 dbSNP
rs1487121060 228 dbSNP
rs1263423462 233 dbSNP
rs1472741248 233 dbSNP
rs962490779 245 dbSNP
rs921789393 251 dbSNP
rs1196128039 257 dbSNP
rs765790690 259 dbSNP
rs755573222 262 dbSNP
rs569481211 269 dbSNP
rs1377057902 277 dbSNP
rs1018081328 287 dbSNP
rs1006722501 295 dbSNP
rs891049087 296 dbSNP
rs754222405 301 dbSNP
rs965839599 306 dbSNP
rs1051485593 308 dbSNP
rs1210657367 309 dbSNP
rs997522523 316 dbSNP
rs1401992934 321 dbSNP
rs552498654 329 dbSNP
rs766897984 333 dbSNP
rs988621886 344 dbSNP
rs1276992913 346 dbSNP
rs956737855 347 dbSNP
rs1041789623 365 dbSNP
rs1032718337 369 dbSNP
rs947462941 370 dbSNP
rs1489058950 373 dbSNP
rs1207562762 376 dbSNP
rs11557376 384 dbSNP
rs979726119 415 dbSNP
rs761577708 418 dbSNP
rs1055982916 419 dbSNP
rs1299820545 420 dbSNP
rs1438927687 423 dbSNP
rs937528721 442 dbSNP
rs773944138 443 dbSNP
rs982126276 445 dbSNP
rs1013785261 459 dbSNP
rs570477589 462 dbSNP
rs1387400958 464 dbSNP
rs973826231 466 dbSNP
rs1375318228 474 dbSNP
rs962439491 477 dbSNP
rs1310375216 489 dbSNP
rs1355411679 490 dbSNP
rs1242110122 491 dbSNP
rs1014716686 492 dbSNP
rs1356487787 499 dbSNP
rs1005006657 503 dbSNP
rs1018028750 508 dbSNP
rs887456279 509 dbSNP
rs1457223126 512 dbSNP
rs955245798 522 dbSNP
rs1179032266 528 dbSNP
rs199819690 535 dbSNP
rs931932376 543 dbSNP
rs903153666 548 dbSNP
rs1368080852 552 dbSNP
rs1163097671 553 dbSNP
rs1424492480 557 dbSNP
rs900457776 559 dbSNP
rs1190992598 569 dbSNP
rs1448221726 580 dbSNP
rs1011635528 586 dbSNP
rs776468960 595 dbSNP
rs1332497882 605 dbSNP
rs1379641986 605 dbSNP
rs1191885142 619 dbSNP
rs1489574085 620 dbSNP
rs1394622809 622 dbSNP
rs1263955260 626 dbSNP
rs893219336 627 dbSNP
rs1246371754 638 dbSNP
rs1055929411 639 dbSNP
rs1040263765 646 dbSNP
rs1199142628 660 dbSNP
rs944575660 662 dbSNP
rs928825893 665 dbSNP
rs768294267 666 dbSNP
rs1255803077 673 dbSNP
rs189104743 676 dbSNP
rs1226018297 679 dbSNP
rs930239450 691 dbSNP
rs1465581103 710 dbSNP
rs528146400 711 dbSNP
rs988244177 728 dbSNP
rs1302572617 729 dbSNP
rs973717680 731 dbSNP
rs368716175 732 dbSNP
rs1388061471 734 dbSNP
rs1416205004 737 dbSNP
rs935388932 738 dbSNP
rs374070362 749 dbSNP
rs1218674136 756 dbSNP
rs985198395 758 dbSNP
rs925321087 760 dbSNP
rs955220597 770 dbSNP
rs979869857 783 dbSNP
rs1483718109 788 dbSNP
rs1410063481 789 dbSNP
rs1213226741 791 dbSNP
rs1261266691 794 dbSNP
rs1029920621 799 dbSNP
rs1422290073 799 dbSNP
rs1477576181 799 dbSNP
rs1431881686 803 dbSNP
rs561337738 808 dbSNP
rs1175840824 814 dbSNP
rs1378526323 820 dbSNP
rs1296002035 821 dbSNP
rs763812340 824 dbSNP
rs967039929 829 dbSNP
rs1428345019 831 dbSNP
rs548128233 849 dbSNP
rs531507915 850 dbSNP
rs960872530 861 dbSNP
rs1218533488 868 dbSNP
rs1301743827 869 dbSNP
rs1015468109 877 dbSNP
rs562763408 878 dbSNP
rs566615199 879 dbSNP
rs1284216592 881 dbSNP
rs1488053241 882 dbSNP
rs887498067 885 dbSNP
rs893166995 890 dbSNP
rs1265365272 907 dbSNP
rs1034421778 917 dbSNP
rs1455902760 926 dbSNP
rs1157216583 928 dbSNP
rs1379312629 928 dbSNP
rs1419856353 937 dbSNP
rs151118803 939 dbSNP
rs907346066 940 dbSNP
rs1347561049 941 dbSNP
rs995823920 949 dbSNP
rs769683450 951 dbSNP
rs1294112041 955 dbSNP
rs1040275017 964 dbSNP
rs1444324760 971 dbSNP
rs1483517082 979 dbSNP
rs1308174914 991 dbSNP
rs1353303913 997 dbSNP
rs930208886 998 dbSNP
rs944585345 1002 dbSNP
rs745849028 1013 dbSNP
rs897392222 1019 dbSNP
rs1320044327 1031 dbSNP
rs1220918963 1042 dbSNP
rs1247858989 1046 dbSNP
rs1470172787 1047 dbSNP
rs1053333884 1048 dbSNP
rs554395549 1072 dbSNP
rs1439944137 1074 dbSNP
rs925382185 1077 dbSNP
rs1256578370 1082 dbSNP
rs1404308257 1083 dbSNP
rs1164799719 1088 dbSNP
rs979539414 1089 dbSNP
rs1234777066 1098 dbSNP
rs948071049 1112 dbSNP
rs143758593 1136 dbSNP
rs1330458255 1139 dbSNP
rs1300009772 1143 dbSNP
rs148993230 1161 dbSNP
rs910914943 1166 dbSNP
rs1281562537 1177 dbSNP
rs1377229475 1179 dbSNP
rs1227821008 1182 dbSNP
rs960926360 1185 dbSNP
rs985145996 1199 dbSNP
rs933751395 1204 dbSNP
rs1197246858 1211 dbSNP
rs1257953896 1218 dbSNP
rs1438794400 1222 dbSNP
rs908050160 1223 dbSNP
rs78190514 1227 dbSNP
rs1396399003 1235 dbSNP
rs1472221836 1249 dbSNP
rs1303866648 1250 dbSNP
rs952229514 1254 dbSNP
rs1468041117 1274 dbSNP
rs1375950627 1278 dbSNP
rs1169929427 1279 dbSNP
rs1400940845 1283 dbSNP
rs1331883952 1284 dbSNP
rs978324223 1284 dbSNP
rs1473022379 1293 dbSNP
rs1027850467 1301 dbSNP
rs1447517986 1307 dbSNP
rs995846819 1308 dbSNP
rs1022204527 1319 dbSNP
rs989426459 1323 dbSNP
rs957330814 1324 dbSNP
rs1340607687 1329 dbSNP
rs1256601571 1333 dbSNP
rs1197934911 1336 dbSNP
rs964346503 1341 dbSNP
rs1441509503 1348 dbSNP
rs1211221980 1370 dbSNP
rs1482250360 1371 dbSNP
rs1261926705 1388 dbSNP
rs1487063117 1390 dbSNP
rs73264073 1392 dbSNP
rs548368440 1395 dbSNP
rs1476311065 1400 dbSNP
rs1024427347 1404 dbSNP
rs1424141859 1406 dbSNP
rs575856850 1407 dbSNP
rs1377497319 1421 dbSNP
rs1008782186 1424 dbSNP
rs1297584388 1426 dbSNP
rs185794490 1441 dbSNP
rs1053022765 1442 dbSNP
rs193120784 1450 dbSNP
rs676944 1459 dbSNP
rs777795928 1460 dbSNP
rs1313910098 1464 dbSNP
rs1043842869 1465 dbSNP
rs1261762469 1469 dbSNP
rs1049385914 1484 dbSNP
rs1196729697 1488 dbSNP
rs79565098 1491 dbSNP
rs1336139906 1496 dbSNP
rs1454601372 1500 dbSNP
rs1457891153 1501 dbSNP
rs543662914 1502 dbSNP
rs1397125313 1518 dbSNP
rs1418054052 1520 dbSNP
rs1042164287 1530 dbSNP
rs779173325 1539 dbSNP
rs1385825230 1542 dbSNP
rs1383969115 1543 dbSNP
rs1157133093 1544 dbSNP
rs1322224041 1548 dbSNP
rs1331023991 1554 dbSNP
rs1442122281 1558 dbSNP
rs1305992914 1559 dbSNP
rs1255973344 1568 dbSNP
rs945192419 1569 dbSNP
rs1238907649 1570 dbSNP
rs1260920760 1571 dbSNP
rs17132129 1576 dbSNP
rs1207544419 1577 dbSNP
rs76060563 1588 dbSNP
rs959278176 1590 dbSNP
rs547794601 1592 dbSNP
rs927245200 1598 dbSNP
rs1236084261 1604 dbSNP
rs983720042 1609 dbSNP
rs1438829838 1624 dbSNP
rs531175682 1625 dbSNP
rs140830819 1626 dbSNP
rs920733434 1636 dbSNP
rs780563305 1640 dbSNP
rs756368110 1667 dbSNP
rs1462386028 1668 dbSNP
rs1328369441 1671 dbSNP
rs961494470 1674 dbSNP
rs1018635730 1675 dbSNP
rs1008541612 1683 dbSNP
rs1337148012 1689 dbSNP
rs890042161 1696 dbSNP
rs750813564 1700 dbSNP
rs1465804423 1701 dbSNP
rs1335417473 1709 dbSNP
rs1050007719 1710 dbSNP
rs1317593983 1711 dbSNP
rs998244264 1712 dbSNP
rs1204135986 1716 dbSNP
rs778284111 1718 dbSNP
rs1457208382 1719 dbSNP
rs1032040476 1721 dbSNP
rs1000084358 1723 dbSNP
rs1251537381 1735 dbSNP
rs1421041144 1752 dbSNP
rs904359099 1753 dbSNP
rs1185546675 1781 dbSNP
rs900867753 1789 dbSNP
rs1475562397 1792 dbSNP
rs555706416 1798 dbSNP
rs1247503892 1799 dbSNP
rs756344424 1802 dbSNP
rs895263279 1805 dbSNP
rs1299043566 1807 dbSNP
rs915038560 1811 dbSNP
rs188918735 1814 dbSNP
rs182907228 1825 dbSNP
rs1436473287 1832 dbSNP
rs560281984 1838 dbSNP
rs1056546744 1841 dbSNP
rs540777245 1844 dbSNP
rs1355589300 1846 dbSNP
rs1053626737 1853 dbSNP
rs191879490 1857 dbSNP
rs926523857 1862 dbSNP
rs982073634 1864 dbSNP
rs1252808034 1870 dbSNP
rs886406368 1871 dbSNP
rs1400304557 1873 dbSNP
rs1048448317 1881 dbSNP
rs930885654 1898 dbSNP
rs920772322 1901 dbSNP
rs1391776763 1904 dbSNP
rs1257035969 1905 dbSNP
rs974910712 1906 dbSNP
rs943521234 1909 dbSNP
rs1190135942 1913 dbSNP
rs1422126051 1921 dbSNP
rs1164764180 1939 dbSNP
rs752121388 1955 dbSNP
rs911681511 1987 dbSNP
rs1456257992 2002 dbSNP
rs187177513 2007 dbSNP
rs955906017 2008 dbSNP
rs1171588685 2024 dbSNP
rs1189066761 2033 dbSNP
rs1464832305 2048 dbSNP
rs1311966181 2057 dbSNP
rs1375667655 2062 dbSNP
rs1416107579 2074 dbSNP
rs1295740742 2077 dbSNP
rs1361229686 2078 dbSNP
rs973203275 2079 dbSNP
rs1297603932 2083 dbSNP
rs1310257811 2101 dbSNP
rs1232250124 2103 dbSNP
rs1451277433 2124 dbSNP
rs1279949535 2127 dbSNP
rs35992136 2142 dbSNP
rs1245624291 2160 dbSNP
rs1031296656 2167 dbSNP
rs1191897685 2172 dbSNP
rs1261070478 2175 dbSNP
rs1485572166 2193 dbSNP
rs979106069 2196 dbSNP
rs1451797726 2204 dbSNP
rs1264476913 2205 dbSNP
rs1431860705 2214 dbSNP
rs767597553 2217 dbSNP
rs1395316570 2218 dbSNP
rs1312055114 2222 dbSNP
rs1436156801 2236 dbSNP
rs561324348 2237 dbSNP
rs1344137920 2239 dbSNP
rs1430777544 2251 dbSNP
rs1212000867 2252 dbSNP
rs1017022190 2253 dbSNP
rs1357657560 2254 dbSNP
rs1365387880 2259 dbSNP
rs1291522618 2282 dbSNP
rs1005674348 2287 dbSNP
rs1303788062 2305 dbSNP
rs759506598 2309 dbSNP
rs1268464047 2320 dbSNP
rs182489396 2328 dbSNP
rs1284111116 2329 dbSNP
rs1022876808 2351 dbSNP
rs1216576740 2353 dbSNP
rs751713837 2355 dbSNP
rs1487754542 2356 dbSNP
rs200442610 2357 dbSNP
rs1012781648 2359 dbSNP
rs10550537 2359 dbSNP
rs145019488 2359 dbSNP
rs895651278 2367 dbSNP
rs1176434062 2368 dbSNP
rs1406780863 2370 dbSNP
rs1028982133 2382 dbSNP
rs553497785 2383 dbSNP
rs900812603 2385 dbSNP
rs1003588460 2395 dbSNP
rs1364673321 2400 dbSNP
rs886454903 2401 dbSNP
rs575574822 2403 dbSNP
rs1388299548 2404 dbSNP
rs1372806153 2405 dbSNP
rs1224415085 2411 dbSNP
rs1333368579 2414 dbSNP
rs559023579 2415 dbSNP
rs930624070 2418 dbSNP
rs1470160245 2420 dbSNP
rs1478108964 2422 dbSNP
rs776345847 2423 dbSNP
rs1247954769 2425 dbSNP
rs1053573008 2426 dbSNP
rs899447175 2430 dbSNP
rs1268580365 2431 dbSNP
rs1474576931 2432 dbSNP
rs191172017 2433 dbSNP
rs1396581756 2446 dbSNP
rs573406158 2454 dbSNP
rs185875845 2456 dbSNP
rs1214500737 2457 dbSNP
rs536411230 2459 dbSNP
rs917196601 2465 dbSNP
rs1300098408 2472 dbSNP
rs1353681934 2473 dbSNP
rs1221871279 2487 dbSNP
rs1294497822 2488 dbSNP
rs1337508030 2491 dbSNP
rs1213183658 2492 dbSNP
rs1272692418 2493 dbSNP
rs567832054 2494 dbSNP
rs554218655 2499 dbSNP
rs537469392 2500 dbSNP
rs1241064477 2503 dbSNP
rs978481128 2504 dbSNP
rs968772690 2507 dbSNP
rs1328024443 2508 dbSNP
rs1167134597 2512 dbSNP
rs1022930627 2523 dbSNP
rs201994609 2524 dbSNP
rs1455965477 2527 dbSNP
rs1172887869 2537 dbSNP
rs1045850317 2544 dbSNP
rs991399893 2548 dbSNP
rs1367425067 2549 dbSNP
rs1426602056 2553 dbSNP
rs950188817 2555 dbSNP
rs1357947512 2558 dbSNP
rs917721881 2559 dbSNP
rs1429176897 2561 dbSNP
rs1270103675 2562 dbSNP
rs1035496819 2563 dbSNP
rs1216675698 2568 dbSNP
rs1004048671 2572 dbSNP
rs886552268 2575 dbSNP
rs1026797450 2579 dbSNP
rs994886049 2580 dbSNP
rs1473737316 2582 dbSNP
rs899164020 2585 dbSNP
rs1192427988 2586 dbSNP
rs1039269022 2587 dbSNP
rs1242632434 2588 dbSNP
rs1204375624 2589 dbSNP
rs1476305420 2590 dbSNP
rs1007727085 2591 dbSNP
rs1189187982 2591 dbSNP
rs1443526506 2594 dbSNP
rs748708512 2605 dbSNP
rs1393507899 2606 dbSNP
rs568818106 2610 dbSNP
rs1174364439 2613 dbSNP
rs1377407071 2619 dbSNP
rs1398992412 2625 dbSNP
rs145353013 2626 dbSNP
rs1327471372 2629 dbSNP
rs1301650986 2630 dbSNP
rs1323071766 2636 dbSNP
rs114341870 2640 dbSNP
rs1230470555 2641 dbSNP
rs114807509 2644 dbSNP
rs1348012335 2646 dbSNP
rs570975128 2647 dbSNP
rs924410694 2648 dbSNP
rs1360870089 2650 dbSNP
rs35129180 2652 dbSNP
rs1252094624 2653 dbSNP
rs1379576160 2653 dbSNP
rs529879791 2653 dbSNP
rs565819711 2653 dbSNP
rs1468890673 2658 dbSNP
rs1157999374 2659 dbSNP
rs561389015 2663 dbSNP
rs1394251187 2670 dbSNP
rs776482283 2673 dbSNP
rs1305256316 2676 dbSNP
rs1333568291 2678 dbSNP
rs991421223 2688 dbSNP
rs959912999 2693 dbSNP
rs1237713546 2694 dbSNP
rs182729423 2702 dbSNP
rs982658787 2703 dbSNP
rs951286891 2708 dbSNP
rs1026432183 2710 dbSNP
rs1272441384 2717 dbSNP
rs1468801229 2723 dbSNP
rs1416958806 2730 dbSNP
rs1215271436 2732 dbSNP
rs1269742152 2740 dbSNP
rs1032080415 2747 dbSNP
rs1406184665 2751 dbSNP
rs1001965975 2766 dbSNP
rs1236285261 2773 dbSNP
rs1473399524 2785 dbSNP
rs1239778152 2791 dbSNP
rs1364506766 2805 dbSNP
rs1473594329 2806 dbSNP
rs1163480235 2811 dbSNP
rs760333332 2814 dbSNP
rs1462310414 2818 dbSNP
rs1328269719 2821 dbSNP
rs1460875898 2826 dbSNP
rs1046229941 2843 dbSNP
rs774973494 2845 dbSNP
rs1329094474 2846 dbSNP
rs949290743 2851 dbSNP
rs375521031 2858 dbSNP
rs963351229 2864 dbSNP
rs1335320294 2866 dbSNP
rs531200050 2868 dbSNP
rs1283260680 2882 dbSNP
rs1007779393 2886 dbSNP
rs772152839 2892 dbSNP
rs1480172898 2898 dbSNP
rs748450067 2902 dbSNP
rs1052430355 2906 dbSNP
rs530852216 2916 dbSNP
rs1228726669 2918 dbSNP
rs940013875 2919 dbSNP
rs1185829013 2922 dbSNP
rs1257443095 2929 dbSNP
rs1381240692 2930 dbSNP
rs903344495 2939 dbSNP
rs1312924112 2951 dbSNP
rs909900688 2953 dbSNP
rs1461771699 2965 dbSNP
rs1042823076 2971 dbSNP
rs1168207492 2972 dbSNP
rs1372008286 2973 dbSNP
rs1365221864 2974 dbSNP
rs947093723 2989 dbSNP
rs1356035196 2994 dbSNP
rs567984083 2998 dbSNP
rs17132127 3002 dbSNP
rs1293311128 3006 dbSNP
rs1306769528 3007 dbSNP
rs1227867059 3012 dbSNP
rs1055495816 3017 dbSNP
rs1252128342 3020 dbSNP
rs921400039 3024 dbSNP
rs1208864236 3033 dbSNP
rs1279643502 3047 dbSNP
rs1486028407 3052 dbSNP
rs79867633 3054 dbSNP
rs1260256818 3062 dbSNP
rs928608266 3067 dbSNP
rs1194260637 3079 dbSNP
rs983096120 3086 dbSNP
rs1344288151 3090 dbSNP
rs553394655 3093 dbSNP
rs988420007 3101 dbSNP
rs573493181 3102 dbSNP
rs1375561134 3108 dbSNP
rs919714459 3109 dbSNP
rs1467126659 3111 dbSNP
rs1387476962 3128 dbSNP
rs1287098926 3136 dbSNP
rs973477459 3145 dbSNP
rs1361112071 3151 dbSNP
rs367989916 3165 dbSNP
rs1299501594 3175 dbSNP
rs1032028705 3177 dbSNP
rs542835909 3181 dbSNP
rs1017631611 3182 dbSNP
rs1007539379 3184 dbSNP
rs904947170 3190 dbSNP
rs1025177045 3192 dbSNP
rs1259499975 3193 dbSNP
rs1485803881 3196 dbSNP
rs1206113270 3198 dbSNP
rs1250343520 3206 dbSNP
rs1444587972 3207 dbSNP
rs1013415503 3208 dbSNP
rs1395292852 3216 dbSNP
rs648304 3219 dbSNP
rs1030618195 3220 dbSNP
rs999481243 3224 dbSNP
rs903356929 3225 dbSNP
rs1322443573 3234 dbSNP
rs192024577 3238 dbSNP
rs537935663 3248 dbSNP
rs555337890 3249 dbSNP
rs1368505379 3256 dbSNP
rs1221046351 3257 dbSNP
rs1304901303 3259 dbSNP
rs1316387024 3264 dbSNP
rs1240438353 3266 dbSNP
rs1270568831 3275 dbSNP
rs1467459328 3286 dbSNP
rs1213391867 3292 dbSNP
rs894252581 3296 dbSNP
rs1253239479 3297 dbSNP
rs186303217 3299 dbSNP
rs867609679 3302 dbSNP
rs1174999887 3303 dbSNP
rs1342830011 3304 dbSNP
rs771495354 3309 dbSNP
rs938360928 3314 dbSNP
rs750717886 3321 dbSNP
rs1415566649 3323 dbSNP
rs1460742164 3328 dbSNP
rs1046976367 3333 dbSNP
rs921356550 3334 dbSNP
rs929859798 3335 dbSNP
rs1360830406 3339 dbSNP
rs1293684722 3340 dbSNP
rs558524487 3343 dbSNP
rs944205994 3344 dbSNP
rs914069330 3346 dbSNP
rs1162099642 3361 dbSNP
rs1290766355 3366 dbSNP
rs1424551527 3369 dbSNP
rs1333240954 3379 dbSNP
rs1391381983 3379 dbSNP
rs1172608160 3383 dbSNP
rs1426889124 3387 dbSNP
rs1290980911 3391 dbSNP
rs919783546 3397 dbSNP
rs1202057982 3404 dbSNP
rs973907579 3411 dbSNP
rs1480707489 3416 dbSNP
rs1490909806 3422 dbSNP
rs1183640574 3424 dbSNP
rs1255325886 3429 dbSNP
rs1266464494 3433 dbSNP
rs1165533877 3438 dbSNP
rs1415742181 3443 dbSNP
rs1221527776 3444 dbSNP
rs1407995075 3453 dbSNP
rs1483333528 3454 dbSNP
rs538215447 3460 dbSNP
rs924903849 3477 dbSNP
rs1410516578 3480 dbSNP
rs1276767392 3485 dbSNP
rs942520063 3490 dbSNP
rs1354143657 3495 dbSNP
rs1414773355 3507 dbSNP
rs1285272109 3511 dbSNP
rs1381883953 3516 dbSNP
rs1225157323 3525 dbSNP
rs781653549 3528 dbSNP
rs980424552 3530 dbSNP
rs969498392 3533 dbSNP
rs986173103 3535 dbSNP
rs1220556324 3538 dbSNP
rs1013767825 3540 dbSNP
rs1188653167 3541 dbSNP
rs961882670 3541 dbSNP
rs1474309782 3545 dbSNP
rs1185646503 3561 dbSNP
rs1301656130 3563 dbSNP
rs1014714866 3593 dbSNP
rs1430586641 3601 dbSNP
rs1170697516 3610 dbSNP
rs1373755312 3629 dbSNP
rs954743812 3632 dbSNP
rs1404787338 3633 dbSNP
rs1342726310 3644 dbSNP
rs1371712302 3649 dbSNP
rs1429070595 3650 dbSNP
rs887688588 3653 dbSNP
rs1366350575 3655 dbSNP
rs1050343749 3657 dbSNP
rs1230208151 3657 dbSNP
rs1460933650 3659 dbSNP
rs1353967257 3664 dbSNP
rs11749245 3668 dbSNP
rs150809549 3669 dbSNP
rs1445167971 3671 dbSNP
rs757969203 3672 dbSNP
rs1198414120 3674 dbSNP
rs944138169 3674 dbSNP
rs1021864620 3682 dbSNP
rs1393490357 3688 dbSNP
rs1453887593 3689 dbSNP
rs1173166181 3694 dbSNP
rs114400238 3700 dbSNP
rs1193955485 3702 dbSNP
rs529949981 3712 dbSNP
rs181610500 3713 dbSNP
rs1034107485 3716 dbSNP
rs1437708751 3722 dbSNP
rs1323494933 3739 dbSNP
rs550842595 3748 dbSNP
rs1233373407 3758 dbSNP
rs531037863 3761 dbSNP
rs1347889890 3774 dbSNP
rs1223189745 3780 dbSNP
rs1320958759 3783 dbSNP
rs534400472 3790 dbSNP
rs929645585 3794 dbSNP
rs969054015 3798 dbSNP
rs764872809 3801 dbSNP
rs1199704884 3803 dbSNP
rs1379485840 3845 dbSNP
rs1038249646 3852 dbSNP
rs1351427534 3854 dbSNP
rs114993497 3859 dbSNP
rs1459157525 3862 dbSNP
rs911022884 3876 dbSNP
rs986183071 3890 dbSNP
rs1393304042 3894 dbSNP
rs933379131 3908 dbSNP
rs1387039676 3911 dbSNP
rs962111230 3913 dbSNP
rs1333551979 3914 dbSNP
rs1014660832 3917 dbSNP
rs1396470795 3936 dbSNP
rs1288929331 3937 dbSNP
rs923364751 3943 dbSNP
rs1231261760 3947 dbSNP
rs977846992 3953 dbSNP
rs112441258 3960 dbSNP
rs1356763548 3961 dbSNP
rs756468341 3965 dbSNP
rs1404004898 3987 dbSNP
rs1269719007 3996 dbSNP
rs967400717 4008 dbSNP
rs1253203566 4009 dbSNP
rs1473827619 4011 dbSNP
rs1457984615 4012 dbSNP
rs371668459 4014 dbSNP
rs1368291306 4042 dbSNP
rs1458733618 4045 dbSNP
rs1021917015 4046 dbSNP
rs990365950 4061 dbSNP
rs189065344 4062 dbSNP
rs1256850853 4073 dbSNP
rs1408871596 4077 dbSNP
rs1034493096 4086 dbSNP
rs1459538909 4094 dbSNP
rs1352282001 4107 dbSNP
rs376969786 4109 dbSNP
rs1340901946 4110 dbSNP
rs1208917514 4119 dbSNP
rs1267461160 4124 dbSNP
rs1020036068 4127 dbSNP
rs1204547556 4137 dbSNP
rs1262838083 4139 dbSNP
rs1275502522 4140 dbSNP
rs532216334 4141 dbSNP
rs1186514953 4143 dbSNP
rs1335681397 4148 dbSNP
rs61669994 4148 dbSNP
rs1313978215 4164 dbSNP
rs1424775559 4166 dbSNP
rs1025375162 4182 dbSNP
rs1189975783 4194 dbSNP
rs892543889 4198 dbSNP
rs1052558874 4200 dbSNP
rs1168817520 4201 dbSNP
rs1380611575 4212 dbSNP
rs1336198636 4216 dbSNP
rs994279443 4217 dbSNP
rs1371914282 4219 dbSNP
rs568721949 4229 dbSNP
rs1436049131 4239 dbSNP
rs1432310488 4242 dbSNP
rs1387479666 4259 dbSNP
rs1038259836 4262 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ugucuUUCACGAAGGGAGUUCuc 5'
               |||   ||::||||||  
Target 5' ---ucAAGACAUUUUCUCAAG-- 3'
 		1 - 18
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000379264.2 | 3UTR | UCAAGACAUUUUCUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000379264.2 | 3UTR | UCAAGACAUUUUCUCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.388 3.1e-2 0.512 5.3e-3 24 Click to see details
GSE28260 Renal cortex and medulla 0.527 3.2e-2 0.430 7.1e-2 13 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.367 3.6e-2 0.373 3.3e-2 25 Click to see details
GSE26953 Aortic valvular endothelial cells 0.317 6.6e-2 0.328 5.9e-2 24 Click to see details
GSE17306 Multiple myeloma -0.216 6.8e-2 -0.140 1.7e-1 49 Click to see details
GSE32688 Pancreatic cancer -0.265 7.1e-2 -0.073 3.5e-1 32 Click to see details
GSE21687 Ependynoma primary tumors 0.157 1.1e-1 0.124 1.6e-1 64 Click to see details
GSE19350 CNS germ cell tumors -0.384 1.1e-1 -0.406 9.5e-2 12 Click to see details
GSE19536 Breast cancer 0.1 1.6e-1 0.092 1.8e-1 100 Click to see details
GSE19783 ER- ER- breast cancer 0.111 1.7e-1 0.034 3.8e-1 79 Click to see details
GSE19783 ER+ ER+ breast cancer 0.203 2.0e-1 0.111 3.2e-1 20 Click to see details
GSE42095 Differentiated embryonic stem cells 0.184 2.0e-1 0.500 7.6e-3 23 Click to see details
GSE21849 B cell lymphoma 0.116 2.7e-1 0.028 4.4e-1 29 Click to see details
GSE17498 Multiple myeloma -0.085 3.0e-1 -0.094 2.8e-1 40 Click to see details
GSE35602 Colorectal cancer stromal tissue -0.08 3.5e-1 0.380 3.0e-2 25 Click to see details
GSE21032 Prostate cancer 0.022 4.2e-1 0.014 4.5e-1 83 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis -0.038 4.4e-1 0.126 3.0e-1 20 Click to see details
GSE27834 Pluripotent stem cells 0.034 4.5e-1 0.053 4.2e-1 16 Click to see details
GSE14794 Lymphoblastoid cells 0.013 4.5e-1 -0.009 4.7e-1 90 Click to see details
GSE38226 Liver fibrosis 0.022 4.6e-1 -0.134 2.8e-1 21 Click to see details
GSE38226 Liver fibrosis 0.022 4.6e-1 -0.134 2.8e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
HNSC -0.406 0.04 -0.251 0.14 20 Click to see details
THCA -0.455 0.04 -0.506 0.02 16 Click to see details
PRAD 0.485 0.05 0.060 0.42 13 Click to see details
LIHC -0.578 0.05 -0.500 0.09 9 Click to see details
LUSC -0.366 0.17 -0.283 0.23 9 Click to see details
STAD 0.449 0.22 0.300 0.31 5 Click to see details
UCEC 0.241 0.38 0.400 0.3 4 Click to see details
BRCA 0.019 0.44 0.025 0.43 56 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
BLCA -0.01 0.49 0.238 0.29 8 Click to see details
234 hsa-miR-526b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT382022 FAM49B family with sequence similarity 49 member B 2 2
MIRT442559 CAB39 calcium binding protein 39 2 2
MIRT443783 ST13 ST13, Hsp70 interacting protein 2 2
MIRT443886 CNKSR3 CNKSR family member 3 2 2
MIRT443970 SSH2 slingshot protein phosphatase 2 2 2
MIRT444050 PROX2 prospero homeobox 2 2 2
MIRT444128 BRCA2 BRCA2, DNA repair associated 2 2
MIRT444144 ARSE arylsulfatase E (chondrodysplasia punctata 1) 2 2
MIRT444171 RBM7 RNA binding motif protein 7 2 2
MIRT444185 SCAMP1 secretory carrier membrane protein 1 2 2
MIRT444217 METTL12 methyltransferase like 12 2 2
MIRT444474 WNT5A Wnt family member 5A 2 2
MIRT444582 GPR89B G protein-coupled receptor 89B 2 2
MIRT444659 TSPAN14 tetraspanin 14 2 2
MIRT444755 LUZP1 leucine zipper protein 1 2 2
MIRT444768 ZNF90 zinc finger protein 90 2 2
MIRT444862 SAMD12 sterile alpha motif domain containing 12 2 2
MIRT444904 KIAA1841 KIAA1841 2 2
MIRT444941 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 2 2
MIRT444966 CDH7 cadherin 7 2 2
MIRT445008 TMEM106B transmembrane protein 106B 2 2
MIRT445014 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT445036 TRPS1 transcriptional repressor GATA binding 1 2 2
MIRT445045 PURB purine rich element binding protein B 2 2
MIRT445075 CXXC4 CXXC finger protein 4 2 2
MIRT445148 KLHL23 kelch like family member 23 2 2
MIRT445228 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 2 2
MIRT445258 C9orf66 chromosome 9 open reading frame 66 2 2
MIRT445263 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) 2 4
MIRT445413 ACSL6 acyl-CoA synthetase long chain family member 6 2 2
MIRT445431 ESD esterase D 2 2
MIRT445475 KDM6A lysine demethylase 6A 2 2
MIRT445618 CLIC4 chloride intracellular channel 4 2 2
MIRT445709 RBL1 RB transcriptional corepressor like 1 2 2
MIRT445736 ITM2A integral membrane protein 2A 2 2
MIRT445787 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445796 IFIT1 interferon induced protein with tetratricopeptide repeats 1 2 2
MIRT445801 ZFYVE9 zinc finger FYVE-type containing 9 2 2
MIRT445805 NFATC2 nuclear factor of activated T-cells 2 2 2
MIRT445814 MCTS1 MCTS1, re-initiation and release factor 2 2
MIRT445861 ZNF451 zinc finger protein 451 2 2
MIRT445871 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit 2 2
MIRT445964 IKZF5 IKAROS family zinc finger 5 2 2
MIRT445974 TSPYL1 TSPY like 1 2 2
MIRT446013 VNN1 vanin 1 2 2
MIRT446021 HBS1L HBS1 like translational GTPase 2 2
MIRT446080 RCOR3 REST corepressor 3 2 2
MIRT446084 SLC30A10 solute carrier family 30 member 10 2 2
MIRT446102 TSC22D2 TSC22 domain family member 2 2 2
MIRT446174 ZNF37A zinc finger protein 37A 2 2
MIRT446185 FGF1 fibroblast growth factor 1 2 2
MIRT446197 GTPBP4 GTP binding protein 4 2 2
MIRT446212 SLC25A44 solute carrier family 25 member 44 2 2
MIRT446229 C17orf80 chromosome 17 open reading frame 80 2 2
MIRT446311 TBC1D8B TBC1 domain family member 8B 2 2
MIRT446362 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT446383 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446411 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446535 GOLGA8B golgin A8 family member B 2 2
MIRT446544 ASTN2 astrotactin 2 2 2
MIRT446563 IDS iduronate 2-sulfatase 2 2
MIRT446569 ZSCAN16 zinc finger and SCAN domain containing 16 2 2
MIRT446596 AKAP1 A-kinase anchoring protein 1 2 2
MIRT446703 FUT10 fucosyltransferase 10 2 2
MIRT446778 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 2 2
MIRT446782 LEPROTL1 leptin receptor overlapping transcript like 1 2 2
MIRT446787 KIF1C kinesin family member 1C 2 2
MIRT446795 PACS1 phosphofurin acidic cluster sorting protein 1 2 2
MIRT446801 C5orf30 chromosome 5 open reading frame 30 2 2
MIRT446841 FOXP1 forkhead box P1 2 2
MIRT446848 FIBIN fin bud initiation factor homolog (zebrafish) 2 2
MIRT446865 NBPF3 NBPF member 3 2 2
MIRT446883 TRIM25 tripartite motif containing 25 2 2
MIRT446904 RGS5 regulator of G protein signaling 5 2 2
MIRT446910 GPR89A G protein-coupled receptor 89A 2 2
MIRT446931 AGGF1 angiogenic factor with G-patch and FHA domains 1 2 2
MIRT446942 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446976 SUSD5 sushi domain containing 5 2 2
MIRT447005 RSF1 remodeling and spacing factor 1 2 2
MIRT447027 TACR3 tachykinin receptor 3 2 2
MIRT447037 ZNF439 zinc finger protein 439 2 2
MIRT447050 STARD5 StAR related lipid transfer domain containing 5 2 2
MIRT447056 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 2 2
MIRT447145 HHIP hedgehog interacting protein 2 2
MIRT447152 PRSS12 protease, serine 12 2 2
MIRT447179 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447198 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma 2 2
MIRT447210 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447238 IHH indian hedgehog 2 2
MIRT447271 FZD5 frizzled class receptor 5 2 2
MIRT447322 ZSCAN21 zinc finger and SCAN domain containing 21 2 2
MIRT447390 TMPRSS15 transmembrane protease, serine 15 2 2
MIRT447409 MED21 mediator complex subunit 21 2 2
MIRT447478 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 2 2
MIRT447549 C14orf37 chromosome 14 open reading frame 37 2 2
MIRT447628 NDST4 N-deacetylase and N-sulfotransferase 4 2 2
MIRT447645 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 2 2
MIRT447694 OGN osteoglycin 2 2
MIRT447733 MOCOS molybdenum cofactor sulfurase 2 2
MIRT447739 C12orf4 chromosome 12 open reading frame 4 2 2
MIRT447868 TRNT1 tRNA nucleotidyl transferase 1 2 2
MIRT447979 LINC00598 long intergenic non-protein coding RNA 598 2 2
MIRT447992 CDX1 caudal type homeobox 1 2 2
MIRT448067 SLC25A43 solute carrier family 25 member 43 2 2
MIRT448113 SEMA4G semaphorin 4G 2 2
MIRT448129 CCDC80 coiled-coil domain containing 80 2 2
MIRT448171 ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 2 2
MIRT448299 ZBTB20 zinc finger and BTB domain containing 20 2 2
MIRT448447 SMC3 structural maintenance of chromosomes 3 2 2
MIRT448467 SLC45A4 solute carrier family 45 member 4 2 2
MIRT448472 SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 2 4
MIRT448481 SEMA4F ssemaphorin 4F 2 2
MIRT448747 HINT1 histidine triad nucleotide binding protein 1 2 2
MIRT448765 GOLGA8A golgin A8 family member A 2 2
MIRT448830 FGD4 FYVE, RhoGEF and PH domain containing 4 2 2
MIRT448852 FEM1C fem-1 homolog C 2 2
MIRT448899 CLOCK clock circadian regulator 2 2
MIRT448905 CLCN6 chloride voltage-gated channel 6 2 4
MIRT448951 CDK19 cyclin dependent kinase 19 2 2
MIRT448974 CADM2 cell adhesion molecule 2 2 2
MIRT449021 AMER2 APC membrane recruitment protein 2 2 2
MIRT449053 NUDT3 nudix hydrolase 3 2 2
MIRT449065 ZNF24 zinc finger protein 24 2 2
MIRT449069 CNDP2 carnosine dipeptidase 2 2 2
MIRT449120 XRRA1 X-ray radiation resistance associated 1 2 2
MIRT449177 LUC7L3 LUC7 like 3 pre-mRNA splicing factor 2 2
MIRT449304 PARP3 poly(ADP-ribose) polymerase family member 3 2 2
MIRT449319 FAM120AOS family with sequence similarity 120A opposite strand 2 2
MIRT449345 GEMIN6 gem nuclear organelle associated protein 6 2 2
MIRT449424 GPR75 G protein-coupled receptor 75 2 2
MIRT449440 STAMBP STAM binding protein 2 2
MIRT449474 ZNF84 zinc finger protein 84 2 2
MIRT449504 TM6SF1 transmembrane 6 superfamily member 1 2 2
MIRT449599 INIP INTS3 and NABP interacting protein 2 4
MIRT449611 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT449630 ELAVL4 ELAV like RNA binding protein 4 2 2
MIRT449654 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 2 2
MIRT449679 CDR1 cerebellar degeneration related protein 1 2 2
MIRT449730 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 2 2
MIRT449777 NUDT16 nudix hydrolase 16 2 2
MIRT449826 TLR4 toll like receptor 4 2 2
MIRT449832 AGK acylglycerol kinase 2 2
MIRT449855 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma 2 2
MIRT449927 TPST2 tyrosylprotein sulfotransferase 2 2 2
MIRT450126 NSUN3 NOP2/Sun RNA methyltransferase family member 3 2 2
MIRT450202 ABHD15 abhydrolase domain containing 15 2 2
MIRT450243 TRIM66 tripartite motif containing 66 2 2
MIRT450268 F2RL2 coagulation factor II thrombin receptor like 2 2 2
MIRT450337 MRPL17 mitochondrial ribosomal protein L17 2 4
MIRT450341 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 2 2
MIRT450344 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT450374 RABGEF1 RAB guanine nucleotide exchange factor 1 2 2
MIRT450408 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 2 2
MIRT450427 CPOX coproporphyrinogen oxidase 2 2
MIRT450451 ZDHHC2 zinc finger DHHC-type containing 2 2 2
MIRT450463 ENOX1 ecto-NOX disulfide-thiol exchanger 1 2 2
MIRT450527 PGLS 6-phosphogluconolactonase 2 2
MIRT450540 SHFM1 SEM1, 26S proteasome complex subunit 2 2
MIRT450631 ZNF654 zinc finger protein 654 2 2
MIRT450652 TMEM70 transmembrane protein 70 2 2
MIRT450670 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 2 2
MIRT450685 RPN2 ribophorin II 2 2
MIRT450707 RNF152 ring finger protein 152 2 2
MIRT450765 PPAPDC2 phospholipid phosphatase 6 2 2
MIRT450812 LIFR LIF receptor alpha 2 2
MIRT450867 GPR107 G protein-coupled receptor 107 2 2
MIRT464938 TXLNA taxilin alpha 2 4
MIRT472332 NETO2 neuropilin and tolloid like 2 2 2
MIRT478672 CSTF1 cleavage stimulation factor subunit 1 2 2
MIRT485664 CDC25B cell division cycle 25B 2 2
MIRT497300 CD300LB CD300 molecule like family member b 2 2
MIRT497587 SLC23A1 solute carrier family 23 member 1 2 2
MIRT497762 KIAA0895 KIAA0895 2 2
MIRT497815 STAT5B signal transducer and activator of transcription 5B 2 2
MIRT497827 GPR26 G protein-coupled receptor 26 2 2
MIRT497855 LGR5 leucine rich repeat containing G protein-coupled receptor 5 2 2
MIRT497975 XBP1P1 X-box binding protein 1 pseudogene 1 2 2
MIRT498178 CREB1 cAMP responsive element binding protein 1 2 2
MIRT498333 PRELID2 PRELI domain containing 2 2 2
MIRT501771 NRBF2 nuclear receptor binding factor 2 2 6
MIRT504823 RAP2A RAP2A, member of RAS oncogene family 2 6
MIRT510498 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta 2 2
MIRT513131 ZNF431 zinc finger protein 431 2 2
MIRT524341 CREBRF CREB3 regulatory factor 2 4
MIRT528236 SPIN4 spindlin family member 4 2 2
MIRT534138 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 2 2
MIRT535420 PDZD8 PDZ domain containing 8 2 2
MIRT535876 MLLT10 MLLT10, histone lysine methyltransferase DOT1L cofactor 2 2
MIRT540789 TMOD2 tropomodulin 2 2 2
MIRT540925 OIP5 Opa interacting protein 5 2 2
MIRT544028 STAM signal transducing adaptor molecule 2 2
MIRT546027 VPS4B vacuolar protein sorting 4 homolog B 2 2
MIRT551818 TMEM138 transmembrane protein 138 2 2
MIRT556115 MLEC malectin 2 4
MIRT557669 GATA6 GATA binding protein 6 2 2
MIRT568897 MGRN1 mahogunin ring finger 1 2 2
MIRT573538 MDM2 MDM2 proto-oncogene 2 2
MIRT615473 RPS6KA3 ribosomal protein S6 kinase A3 2 2
MIRT618257 DDX51 DEAD-box helicase 51 2 2
MIRT619905 FAM43B family with sequence similarity 43 member B 2 2
MIRT621109 SP110 SP110 nuclear body protein 2 2
MIRT622331 SEC63 SEC63 homolog, protein translocation regulator 2 2
MIRT622682 PLSCR1 phospholipid scramblase 1 2 2
MIRT624095 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 2 2
MIRT628661 FAM83C family with sequence similarity 83 member C 2 2
MIRT639259 MANEAL mannosidase endo-alpha like 2 2
MIRT641171 LYPLA1 lysophospholipase I 2 2
MIRT642966 FUT6 fucosyltransferase 6 2 2
MIRT643539 SLC25A17 solute carrier family 25 member 17 2 2
MIRT648679 AP1M1 adaptor related protein complex 1 mu 1 subunit 2 2
MIRT649446 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 2 2
MIRT651353 ZBTB40 zinc finger and BTB domain containing 40 2 2
MIRT651565 WHSC1L1 nuclear receptor binding SET domain protein 3 2 2
MIRT652242 TPPP tubulin polymerization promoting protein 2 2
MIRT653925 SERPINC1 serpin family C member 1 2 2
MIRT654113 RPS6KA5 ribosomal protein S6 kinase A5 2 2
MIRT658395 FAM221B family with sequence similarity 221 member B 2 2
MIRT658581 EPHB1 EPH receptor B1 2 2
MIRT660026 C16orf52 chromosome 16 open reading frame 52 2 2
MIRT661405 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 2 2
MIRT664138 ATP6V1G3 ATPase H+ transporting V1 subunit G3 2 2
MIRT665655 TRIM33 tripartite motif containing 33 2 2
MIRT691641 SLC43A3 solute carrier family 43 member 3 2 2
MIRT692708 MEAF6 MYST/Esa1 associated factor 6 2 2
MIRT693859 IYD iodotyrosine deiodinase 2 2
MIRT702910 CRAMP1L cramped chromatin regulator homolog 1 2 2
MIRT705052 C5orf15 chromosome 5 open reading frame 15 2 2
MIRT705124 C1orf52 chromosome 1 open reading frame 52 2 2
MIRT705534 ARL10 ADP ribosylation factor like GTPase 10 2 2
MIRT708676 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 2 2
MIRT709868 A1CF APOBEC1 complementation factor 2 2
MIRT715657 ZBTB25 zinc finger and BTB domain containing 25 2 2
MIRT716567 DLGAP2 DLG associated protein 2 2 2
MIRT737090 SIK2 salt inducible kinase 2 3 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-526b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-526b 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-526b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-526b Dabrafenib 44462760 NSC764134 approved sensitive cell line (A375)
hsa-mir-526b Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved resistant High Germ Cell Tumor cell line (NTERA-2)
hsa-miR-526b-5p Dabrafenib 44462760 NSC764134 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved sensitive High Melanoma cell line (A375, IGR37, 501Mel)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, H3122)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved resistant cell line (PC9)
hsa-miR-526b-5p Vemurafenib 42611257 NSC761431 approved resistant cell line (451Lu)
hsa-miR-526b-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-526b-5p Paclitaxel 36314 NSC125973 approved resistant cell line (HS578T)
hsa-miR-526b-5p Doxorubicin 31703 NSC123127 approved sensitive cell line (HS578T)
hsa-miR-526b-5p Testosterone+Letrozole sensitive cell line (MCF-7)
hsa-miR-526b-5p Testosterone+Exemestane sensitive cell line (MCF-7)
hsa-miR-526b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-526b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (HCT15)
hsa-miR-526b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardA)
hsa-miR-526b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-526b-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-526b-5p Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-526b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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