miRTarBase - #MIRT445847


—
pre-miRNA Information
pre-miRNA hsa-mir-302b   
Genomic Coordinates chr4: 112648485 - 112648557
Description Homo sapiens miR-302b stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-302b-5p
Sequence 11| ACUUUAACAUGGAAGUGCUUUC |32
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN8489942 10 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs771747691 1 dbSNP
rs1413992790 2 dbSNP
rs1287454726 3 dbSNP
rs1407802102 5 dbSNP
rs556661625 8 dbSNP
rs114318553 9 dbSNP
rs183105707 12 dbSNP
rs759066554 13 dbSNP
rs1338196516 15 dbSNP
Putative Targets

Gene Information
Gene Symbol FPGT   
Synonyms GFPP
Description fucose-1-phosphate guanylyltransferase
Transcript NM_003838   
Expression
Putative miRNA Targets on FPGT
3'UTR of FPGT
(miRNA target sites are highlighted)		 
>FPGT|NM_003838|3'UTR
   1 AGATATTTTAAATATTGTACACTTTGCCTTTTTGAGTAACATTCCAGAGATAGGTATTTTTTGTAGGCTGTTTCACTGAA
  81 CTCAGTTAATGAAAACTGTATTAACATAATTGTTGTAGCATAATATTAATAGTGCAAAAGTACATATAAGTCATTTTGAT
 161 GAAAAATATTCCAAGACTAAGTTGAGAAAAGAGATACTATTTTGGATGTGTATCAGTATTTTTGTTTTTAATAATGATTG
 241 ATTTGTGGAGCATTGTTTTTTCACATAATTAGTTTTAAAGGTAATTTTCTAAGCATACCTTTGGAATTTTTCCATCTTTT
 321 TTGAGGCTTTTGGTCCAGTGAAGTTCTAAGTATTCACTGGCACTTCTCTCCTCAACTGTAATTCTATTTTTAATAATAAA
 401 AATGGCATACTGTAGGGTCTTCAGAGTAGTGTAGGAATACTGTAGAAATACTTTTTCAGAAACGAATCCATAGCTGACAA
 481 ATTCACTCAGTGCCCAATATATTGTGATTATTTTCGTTGATAAAGAACTAGATACAAAGACCTCTGAAATTGATGATAAA
 561 ATTTGTATCTCATTAATTTTATCAAAATGAAACTAAAAGTACATATGTATTATACACTTGAACATGTGTTTGTATATCTT
 641 TAAAATTTTCCTTTATGTTCCATTCCATAGGAAAACACACATATGCACACAAAACTCAGTTATCTGTGGGGAAAGTGGTA
 721 GTAATAATTGAGATTCATCAATAATCATATAATTTCACTATAGACATTACTTGCATTATCTCCTATCAGTCCTTCTAACA
 801 AAACTTCAATTACCAGATGAACTGACTTTAGTTTTCATCTTATTTTTTGTCCACATGCTGGTGATGCTGAGAAACAATAA
 881 TTGGCCCAAATGCAGACATCAAGAAGCAGGCAGGAAAATGGAAAAACTGAGATAATACACAGGTGATAAACAGTTTCGAG
 961 AAAATAAAAATTGGCTAGAATCTCAAGTTATGTGTTTCTATATTGGTATAAGCATATAAGTGAAAAGTCTTATAAGTGTA
1041 ATAGAGAAAAGATTTGTCAGTGTGTTTTTTTAAATGAAATAACTAGTCTGTGCTACTTTATGTCAATATAAAAATTGGTA
1121 AACTAGAAGTAACTTGTCCACAACCCTCAGTTATGATACTTATGTGCGTGTTTTTTTTTCCAAAGTTTTTCCCAAGGAGA
1201 AGATACAAATATATGGTAGCTATTGTTTAAAAATGATTGATTTACTTGCAGATTTTTCAGAGGATGTTATGTCTTTGTCA
1281 TTCATTAAATGTTCAAAATTGTAGTTTTACCAAATCTGAAGTGCCATCAGTTATAAGAATCACCATTATTTTATGTTCCA
1361 TTAAGAAAAACACAATAAAACATGACACTGCTTTTTTTGTTACTTGAAATTTTCATATTTATTGGAGAGCTCTTTTAGAT
1441 GTTTTTAAATACAGATTTTTATTTAACCCTCTTGCATATACATATAAAATAACAAAAAAATAAAATATTGAGATATCATC
1521 AAGAAATTTCTACAGCTTCACATTCAAACTCTTCAGCACTTTCAGAGCTATTGATATGCATATGTCCACCTAGTACCATC
1601 TTCTCTGCTTTCAGAATTATTGGTAAGGCTGCATTTCCTGAGTGCTCTACCACACTTATGTCTGGATTTTTTTTACCCAG
1681 CTACAGACCCACACTCCTGCAAGATTTGATACCCTTCTATTTGGCAAAACTCAGTTTCACTTTTCTTTCAGTTTAATCAC
1761 AGGTCCTTAGAAGATCGGACCTGTGATTCTATTCAAAGTCAGAAAGAGATTTCTCACAAATTGACGTCATATTAACATGT
1841 CAATATGAAAATTAATTGTTTGGTAAACCAGAAGTGACCTGTCTGAAGCCCTCAATTGTGGTATTTGTGTGTTTGTTTTT
1921 TCTTTTTCAAGATTCTTTTTAAAGAAAATATATGGTAGCTGTTGTTTAACATTTATCTACTTACAGAGCGTTCAGAGGAT
2001 GTTATATGTTTATTAAGTGCTCAATACTGTATTTTAACCTAATCTGAATTTTAATCATAATCCTGTACAATGCATGGATT
2081 CTGGTTGCTTTGAAATGGTTCTGTTCAAAGGACTTATCAATGTCTCTTGCTTTGAGATGTATTGCTTGGTGTGTAGTAGC
2161 ACAAACGTACCACCAATAATGTACCTAATTCAACTGAAGTGACAGTCATATACGCAGATATGACCAAGTTCACATGTGAG
2241 CAAGTAACAACTCCATGACTATTGCTGCCTGGCTAATAGCTATTATACTATCATTTGTAAGGCACATTCTGTTTTCTGGG
2321 GTGTCGAAATGTGGATAAAAAAAGATGAATTAGGAATGATTCTAACCTAAGTATGTGTTTTAATAAAAGGATCTAGGCAA
2401 AAAAAAAAAAAGTAAGTCACTCCTAAATTTAATCCCTGAATAATGCAGTGTACATGATGATAGAGGAGAAGTGTGTTTTT
2481 GATAAGAAGTGACTAAATTTTGTGACAATCTTAATTTTTTAGGCTTTTCATTTAGTCTTCCAATAAAGATAATTTTTTTC
2561 TGAGTTTTATCAGCAGTAGAAAAATAAGACCTACATGGATAAGTTTGAAATTAAACATTTTGTCTCATTTTATAATTTTT
2641 ATTTTTATGAAATCATGGCACTTACATCATATACTCAGGTGTGTAAAAGCCTGCTATTTGTAACTATAATCCATAAACTT
2721 ATTGATGATTTAATAACTATCAACAAGGGCATGGGAAAAATTCAACATTTGATAATAATCTTTTACCTTAGGCATTTATT
2801 CTCTAAGCAAAGCAGAAATAAAGGATATGTATCAGTGTATACTGATTGAAATAAAGCTTTAAAAATCCAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' cuUUCGUGAAGGU-ACAAUUUCa 5'
            :| :|:||:|: || ||||| 
Target 5' gtGATTATTTTCGTTGATAAAGa 3'
 504 - 526 132.00 -8.40
2 
miRNA  3' cuUUCGUGAAGGUACAAU-UUCa 5'
            |||::|  :|| |||| ||| 
Target 5' tgAAGTGCCATCA-GTTATAAGa 3'
 1317 - 1338 127.00 -6.30
3 
miRNA  3' cuUUCGUGAAGGUACAAUUUCa 5'
            ||| | |||: | |||||| 
Target 5' tcAAG-A-TTCT-TTTTAAAGa 3'
 1927 - 1945 125.00 -5.10
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN16207177 4 COSMIC
COSN26976704 27 COSMIC
COSN30184223 35 COSMIC
COSN30178374 50 COSMIC
COSN30187286 54 COSMIC
COSN30497904 55 COSMIC
COSN2375134 63 COSMIC
COSN26976703 63 COSMIC
COSN30499002 69 COSMIC
COSN31585740 75 COSMIC
COSN29355121 213 COSMIC
COSN28420693 282 COSMIC
COSN8508184 364 COSMIC
COSN21379192 475 COSMIC
COSN6044936 662 COSMIC
COSN25070051 761 COSMIC
COSN25559690 818 COSMIC
COSN5376577 895 COSMIC
COSN16782689 1013 COSMIC
COSN10053245 1017 COSMIC
COSN29584658 1180 COSMIC
COSN7471558 1180 COSMIC
COSN7471559 1185 COSMIC
COSN23128215 1205 COSMIC
COSN22085807 1411 COSMIC
COSN27930796 1916 COSMIC
COSN25538423 2055 COSMIC
COSN16208066 2067 COSMIC
COSN27456792 2412 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs571848 4 dbSNP
rs535570007 6 dbSNP
rs777967231 7 dbSNP
rs1179222277 12 dbSNP
rs1223537398 16 dbSNP
rs747313963 17 dbSNP
rs1440234004 18 dbSNP
rs757258443 20 dbSNP
rs781369221 23 dbSNP
rs985561787 27 dbSNP
rs1481459142 28 dbSNP
rs749136899 37 dbSNP
rs755892661 41 dbSNP
rs879131143 50 dbSNP
rs1243623155 51 dbSNP
rs768733792 52 dbSNP
rs879216185 53 dbSNP
rs944231942 57 dbSNP
rs934390746 82 dbSNP
rs1316111714 95 dbSNP
rs1052825834 110 dbSNP
rs895471268 114 dbSNP
rs949684533 118 dbSNP
rs1215369086 121 dbSNP
rs1364429747 130 dbSNP
rs768571602 131 dbSNP
rs936298998 136 dbSNP
rs553778822 137 dbSNP
rs1044637431 140 dbSNP
rs1156839158 145 dbSNP
rs1464561360 147 dbSNP
rs113617272 148 dbSNP
rs947799693 157 dbSNP
rs879634177 162 dbSNP
rs777890640 169 dbSNP
rs1421120243 176 dbSNP
rs779945629 176 dbSNP
rs1457707289 177 dbSNP
rs1443731474 181 dbSNP
rs1243570796 189 dbSNP
rs906097253 193 dbSNP
rs1185323575 198 dbSNP
rs533409144 199 dbSNP
rs1387973275 209 dbSNP
rs1388107305 211 dbSNP
rs906347091 229 dbSNP
rs1038483519 238 dbSNP
rs1301589664 243 dbSNP
rs897271392 248 dbSNP
rs770863988 254 dbSNP
rs1383954200 262 dbSNP
rs1317675406 267 dbSNP
rs994657067 269 dbSNP
rs1445199890 272 dbSNP
rs1029706011 274 dbSNP
rs1299248298 278 dbSNP
rs955564598 284 dbSNP
rs776562252 292 dbSNP
rs1355797174 294 dbSNP
rs545430654 295 dbSNP
rs565699819 297 dbSNP
rs1017550193 298 dbSNP
rs1229577228 301 dbSNP
rs964603151 307 dbSNP
rs978617817 309 dbSNP
rs1487571406 319 dbSNP
rs954071395 326 dbSNP
rs1177730132 327 dbSNP
rs539707389 330 dbSNP
rs1211840520 333 dbSNP
rs1245102071 356 dbSNP
rs149826787 358 dbSNP
rs1268388270 366 dbSNP
rs576141929 366 dbSNP
rs1294399169 368 dbSNP
rs1238346686 372 dbSNP
rs144922146 376 dbSNP
rs1308277401 383 dbSNP
rs955856549 385 dbSNP
rs988971326 387 dbSNP
rs1374847121 391 dbSNP
rs916973246 396 dbSNP
rs1403945670 406 dbSNP
rs1472849500 408 dbSNP
rs949735005 410 dbSNP
rs1164163912 411 dbSNP
rs1363037850 413 dbSNP
rs978291159 417 dbSNP
rs924149250 418 dbSNP
rs1459035763 420 dbSNP
rs1198877921 422 dbSNP
rs1293748813 430 dbSNP
rs936956887 432 dbSNP
rs1214752423 445 dbSNP
rs989522567 449 dbSNP
rs1261722419 453 dbSNP
rs1306508135 463 dbSNP
rs916235682 464 dbSNP
rs1241789265 465 dbSNP
rs1352753396 469 dbSNP
rs1311025838 471 dbSNP
rs1283206863 473 dbSNP
rs12027644 479 dbSNP
rs374170940 481 dbSNP
rs1284758625 484 dbSNP
rs541156951 485 dbSNP
rs1383948288 487 dbSNP
rs941603494 488 dbSNP
rs1038572670 507 dbSNP
rs559295484 516 dbSNP
rs994312790 517 dbSNP
rs1341644719 521 dbSNP
rs1203307688 522 dbSNP
rs1175635508 533 dbSNP
rs769464206 536 dbSNP
rs1480776979 544 dbSNP
rs891191267 551 dbSNP
rs1006918270 557 dbSNP
rs1483282704 561 dbSNP
rs1018272631 562 dbSNP
rs374961601 570 dbSNP
rs1207195375 572 dbSNP
rs1460269943 572 dbSNP
rs754896975 577 dbSNP
rs1000113417 582 dbSNP
rs1204891168 584 dbSNP
rs1254081358 595 dbSNP
rs774955067 597 dbSNP
rs956075730 599 dbSNP
rs183563568 600 dbSNP
rs917005191 604 dbSNP
rs971102358 615 dbSNP
rs889780641 618 dbSNP
rs1006878021 621 dbSNP
rs1372023671 624 dbSNP
rs560479525 626 dbSNP
rs926958591 629 dbSNP
rs1335957800 634 dbSNP
rs1470286770 635 dbSNP
rs763525801 635 dbSNP
rs1166292494 637 dbSNP
rs1039033855 638 dbSNP
rs1170141822 663 dbSNP
rs918816528 666 dbSNP
rs563824168 674 dbSNP
rs531274972 675 dbSNP
rs527614221 679 dbSNP
rs1195624738 687 dbSNP
rs1443117580 689 dbSNP
rs753149401 689 dbSNP
rs762291348 691 dbSNP
rs978641455 698 dbSNP
rs1280124008 703 dbSNP
rs1031181241 705 dbSNP
rs1338201006 707 dbSNP
rs1242770593 709 dbSNP
rs1251478691 711 dbSNP
rs1229196477 712 dbSNP
rs891241879 713 dbSNP
rs1314176061 716 dbSNP
rs1453280747 725 dbSNP
rs767940395 737 dbSNP
rs1326786116 741 dbSNP
rs1039768362 745 dbSNP
rs549294402 747 dbSNP
rs1000840670 748 dbSNP
rs1397337823 750 dbSNP
rs1169836063 769 dbSNP
rs989730858 775 dbSNP
rs567875101 776 dbSNP
rs1226417181 777 dbSNP
rs1277095062 796 dbSNP
rs891688789 798 dbSNP
rs3737561 801 dbSNP
rs489941 808 dbSNP
rs1484167049 810 dbSNP
rs192788380 811 dbSNP
rs1436683971 812 dbSNP
rs1182408740 820 dbSNP
rs1206830733 827 dbSNP
rs1246853081 830 dbSNP
rs1356903872 837 dbSNP
rs947695397 840 dbSNP
rs1024129373 841 dbSNP
rs927661458 846 dbSNP
rs1277658691 855 dbSNP
rs11210432 859 dbSNP
rs1238287324 868 dbSNP
rs1336400283 875 dbSNP
rs940442164 878 dbSNP
rs567380617 881 dbSNP
rs149064479 885 dbSNP
rs1304000003 907 dbSNP
rs1175721308 908 dbSNP
rs1034026407 910 dbSNP
rs1406282508 937 dbSNP
rs1158465723 958 dbSNP
rs491623 959 dbSNP
rs1363862714 964 dbSNP
rs1183628976 966 dbSNP
rs930510893 975 dbSNP
rs973739609 977 dbSNP
rs918856531 978 dbSNP
rs1222809726 989 dbSNP
rs1453080728 992 dbSNP
rs930228614 993 dbSNP
rs1204464797 997 dbSNP
rs987406923 1000 dbSNP
rs1290145472 1002 dbSNP
rs1221704707 1003 dbSNP
rs912730672 1004 dbSNP
rs569845479 1007 dbSNP
rs942808198 1009 dbSNP
rs1284120836 1017 dbSNP
rs1467992340 1031 dbSNP
rs1343782313 1033 dbSNP
rs1039820874 1040 dbSNP
rs903912424 1041 dbSNP
rs936687485 1045 dbSNP
rs549509991 1056 dbSNP
rs537388096 1059 dbSNP
rs891735568 1060 dbSNP
rs1479147689 1061 dbSNP
rs1387968205 1065 dbSNP
rs1428036571 1065 dbSNP
rs1010147015 1071 dbSNP
rs780349505 1074 dbSNP
rs1024136779 1094 dbSNP
rs1240138002 1097 dbSNP
rs1031528323 1100 dbSNP
rs1299926267 1103 dbSNP
rs183309233 1107 dbSNP
rs1011527239 1108 dbSNP
rs1201731624 1109 dbSNP
rs1023861120 1110 dbSNP
rs1001293181 1117 dbSNP
rs758121362 1121 dbSNP
rs41289178 1124 dbSNP
rs956 1125 dbSNP
rs1269841628 1141 dbSNP
rs1802016 1143 dbSNP
rs747002225 1146 dbSNP
rs951755302 1151 dbSNP
rs1335280357 1154 dbSNP
rs987075427 1155 dbSNP
rs912787770 1158 dbSNP
rs942860468 1160 dbSNP
rs1404699502 1162 dbSNP
rs1176607507 1163 dbSNP
rs553060095 1164 dbSNP
rs757229019 1165 dbSNP
rs186559137 1168 dbSNP
rs1475598108 1169 dbSNP
rs930457588 1171 dbSNP
rs1050220343 1172 dbSNP
rs1209982054 1176 dbSNP
rs1243820864 1177 dbSNP
rs1248118024 1178 dbSNP
rs544992162 1180 dbSNP
rs553354438 1182 dbSNP
rs1052898606 1192 dbSNP
rs913900910 1202 dbSNP
rs949379727 1204 dbSNP
rs1452538056 1217 dbSNP
rs1052522868 1223 dbSNP
rs893891316 1224 dbSNP
rs1305128249 1229 dbSNP
rs781181296 1244 dbSNP
rs1352296296 1249 dbSNP
rs17094935 1261 dbSNP
rs1322585042 1278 dbSNP
rs769434343 1290 dbSNP
rs1389509246 1295 dbSNP
rs1001346464 1300 dbSNP
rs575824614 1305 dbSNP
rs1183557734 1307 dbSNP
rs1003787359 1313 dbSNP
rs543326072 1314 dbSNP
rs898272779 1319 dbSNP
rs1484195886 1320 dbSNP
rs995261636 1325 dbSNP
rs1289865391 1331 dbSNP
rs961727072 1334 dbSNP
rs1360649742 1336 dbSNP
rs1315394101 1372 dbSNP
rs1222606519 1375 dbSNP
rs561288193 1378 dbSNP
rs972146779 1381 dbSNP
rs528702170 1383 dbSNP
rs1297160748 1384 dbSNP
rs1326915584 1385 dbSNP
rs1371954787 1391 dbSNP
rs1230170810 1392 dbSNP
rs1300921736 1392 dbSNP
rs1025774765 1395 dbSNP
rs754996176 1410 dbSNP
rs951089858 1422 dbSNP
rs1007871677 1432 dbSNP
rs1407339001 1439 dbSNP
rs1450579805 1440 dbSNP
rs1218898611 1441 dbSNP
rs1248152085 1442 dbSNP
rs1473619747 1443 dbSNP
rs1175003692 1449 dbSNP
rs1019898081 1454 dbSNP
rs1222069647 1457 dbSNP
rs1490607744 1467 dbSNP
rs1267661268 1479 dbSNP
rs1214258234 1481 dbSNP
rs951904372 1485 dbSNP
rs1308346073 1493 dbSNP
rs1228411707 1494 dbSNP
rs1351828285 1494 dbSNP
rs1280936678 1498 dbSNP
rs985897742 1500 dbSNP
rs1391170252 1501 dbSNP
rs1295133655 1507 dbSNP
rs910372996 1516 dbSNP
rs1344471848 1525 dbSNP
rs1159843138 1535 dbSNP
rs1458854253 1541 dbSNP
rs944566030 1542 dbSNP
rs1198945352 1547 dbSNP
rs1471873868 1555 dbSNP
rs547465640 1557 dbSNP
rs975969078 1560 dbSNP
rs1185078009 1561 dbSNP
rs1162050850 1569 dbSNP
rs1485754742 1574 dbSNP
rs924558071 1575 dbSNP
rs748831414 1578 dbSNP
rs768208498 1579 dbSNP
rs935314162 1583 dbSNP
rs1222512475 1585 dbSNP
rs1331256880 1591 dbSNP
rs1302971334 1595 dbSNP
rs1052869533 1604 dbSNP
rs975609221 1605 dbSNP
rs35920753 1606 dbSNP
rs145732951 1620 dbSNP
rs1458801705 1623 dbSNP
rs958403333 1624 dbSNP
rs1403985615 1632 dbSNP
rs551075799 1644 dbSNP
rs1405791952 1649 dbSNP
rs1379533946 1650 dbSNP
rs569663779 1654 dbSNP
rs1428254188 1656 dbSNP
rs1249084899 1658 dbSNP
rs949432114 1659 dbSNP
rs1411549067 1667 dbSNP
rs1460420493 1667 dbSNP
rs1199330861 1669 dbSNP
rs1345136013 1674 dbSNP
rs138688267 1677 dbSNP
rs1355020828 1679 dbSNP
rs1224840217 1681 dbSNP
rs1305013799 1691 dbSNP
rs1035235706 1701 dbSNP
rs928582567 1711 dbSNP
rs898073175 1712 dbSNP
rs993154207 1714 dbSNP
rs1291406873 1720 dbSNP
rs1336018953 1721 dbSNP
rs1321897858 1724 dbSNP
rs1027746182 1754 dbSNP
rs1296642452 1759 dbSNP
rs937249982 1767 dbSNP
rs1055591662 1772 dbSNP
rs1391161026 1774 dbSNP
rs866475215 1777 dbSNP
rs898328916 1778 dbSNP
rs1184956747 1780 dbSNP
rs549276481 1782 dbSNP
rs1472761753 1783 dbSNP
rs1161478981 1789 dbSNP
rs1017347483 1794 dbSNP
rs965843016 1796 dbSNP
rs1257722205 1801 dbSNP
rs1193705900 1807 dbSNP
rs1416075992 1808 dbSNP
rs1274919633 1809 dbSNP
rs1230273162 1819 dbSNP
rs1357040373 1822 dbSNP
rs1314246654 1825 dbSNP
rs520806 1826 dbSNP
rs1342325983 1828 dbSNP
rs886837623 1831 dbSNP
rs1007922638 1844 dbSNP
rs1019278008 1845 dbSNP
rs199766669 1853 dbSNP
rs111605324 1854 dbSNP
rs34167755 1854 dbSNP
rs397758031 1854 dbSNP
rs111394121 1855 dbSNP
rs201768624 1856 dbSNP
rs199918329 1858 dbSNP
rs1365385982 1863 dbSNP
rs1445766590 1864 dbSNP
rs1285411741 1866 dbSNP
rs1474093044 1869 dbSNP
rs1369690722 1870 dbSNP
rs997099603 1871 dbSNP
rs1032968385 1872 dbSNP
rs1252030054 1874 dbSNP
rs1206895014 1875 dbSNP
rs1489785489 1876 dbSNP
rs1382936090 1878 dbSNP
rs958243941 1882 dbSNP
rs1358292065 1890 dbSNP
rs534512320 1896 dbSNP
rs552789392 1897 dbSNP
rs1272113934 1905 dbSNP
rs1290411323 1914 dbSNP
rs1403388328 1916 dbSNP
rs559100416 1917 dbSNP
rs1305522166 1918 dbSNP
rs1207660471 1923 dbSNP
rs914013021 1932 dbSNP
rs766587208 1936 dbSNP
rs764193334 1937 dbSNP
rs1057051606 1942 dbSNP
rs1407440939 1957 dbSNP
rs1158522255 1960 dbSNP
rs898047526 1960 dbSNP
rs994142359 1963 dbSNP
rs577698836 1980 dbSNP
rs1412122508 1982 dbSNP
rs1183877505 1985 dbSNP
rs772589983 1986 dbSNP
rs1027929555 1989 dbSNP
rs1199227647 1990 dbSNP
rs970772621 1991 dbSNP
rs1208071865 1993 dbSNP
rs1221909328 1999 dbSNP
rs1329905607 1999 dbSNP
rs1445363036 1999 dbSNP
rs1367090453 2001 dbSNP
rs887438119 2007 dbSNP
rs141419682 2009 dbSNP
rs1325083572 2025 dbSNP
rs1320439489 2045 dbSNP
rs1007214859 2049 dbSNP
rs1160647889 2052 dbSNP
rs1467784007 2055 dbSNP
rs982110325 2059 dbSNP
rs522759 2067 dbSNP
rs575609528 2082 dbSNP
rs1172831079 2086 dbSNP
rs1388623470 2093 dbSNP
rs965771723 2094 dbSNP
rs975865844 2095 dbSNP
rs1031937534 2097 dbSNP
rs1451564104 2109 dbSNP
rs1465343554 2112 dbSNP
rs955929656 2113 dbSNP
rs542908399 2121 dbSNP
rs990456696 2138 dbSNP
rs191337083 2140 dbSNP
rs914527122 2145 dbSNP
rs1297410851 2154 dbSNP
rs968005095 2154 dbSNP
rs980769596 2162 dbSNP
rs991371539 2167 dbSNP
rs939428252 2168 dbSNP
rs1445120446 2169 dbSNP
rs1401272324 2175 dbSNP
rs1412658794 2182 dbSNP
rs114959379 2189 dbSNP
rs919400727 2200 dbSNP
rs374419379 2214 dbSNP
rs1417125233 2228 dbSNP
rs931181584 2232 dbSNP
rs540824221 2236 dbSNP
rs1049770335 2237 dbSNP
rs556756720 2245 dbSNP
rs1482951950 2249 dbSNP
rs1238175456 2251 dbSNP
rs1436223671 2252 dbSNP
rs1007141414 2255 dbSNP
rs1038694961 2256 dbSNP
rs901573634 2259 dbSNP
rs545664 2262 dbSNP
rs1228301935 2264 dbSNP
rs1205779840 2266 dbSNP
rs1271093639 2273 dbSNP
rs61778030 2278 dbSNP
rs956067294 2279 dbSNP
rs1011414121 2283 dbSNP
rs545721 2284 dbSNP
rs1040772544 2290 dbSNP
rs147023056 2298 dbSNP
rs899503613 2303 dbSNP
rs1162576162 2305 dbSNP
rs138106346 2307 dbSNP
rs1414448684 2312 dbSNP
rs574739433 2315 dbSNP
rs926593519 2319 dbSNP
rs1032613221 2322 dbSNP
rs1251301348 2327 dbSNP
rs184646764 2327 dbSNP
rs1206187824 2335 dbSNP
rs1484228148 2337 dbSNP
rs922771207 2338 dbSNP
rs1221467430 2344 dbSNP
rs141714515 2348 dbSNP
rs1021530488 2354 dbSNP
rs527667774 2359 dbSNP
rs919388741 2365 dbSNP
rs933045765 2385 dbSNP
rs1174246337 2386 dbSNP
rs546365945 2388 dbSNP
rs1429835696 2389 dbSNP
rs879423355 2391 dbSNP
rs1457227201 2392 dbSNP
rs879475134 2394 dbSNP
rs1390241641 2397 dbSNP
rs1382404162 2398 dbSNP
rs1051968246 2399 dbSNP
rs1183147525 2399 dbSNP
rs1411389492 2399 dbSNP
rs1472875584 2405 dbSNP
rs929425136 2415 dbSNP
rs1049237076 2423 dbSNP
rs571130614 2424 dbSNP
rs982162436 2447 dbSNP
rs1033689506 2453 dbSNP
rs959380970 2455 dbSNP
rs1326439757 2461 dbSNP
rs1285588196 2463 dbSNP
rs943640759 2466 dbSNP
rs781309297 2477 dbSNP
rs1330698481 2484 dbSNP
rs1039283664 2485 dbSNP
rs901501615 2487 dbSNP
rs997223700 2489 dbSNP
rs538722098 2491 dbSNP
rs1432882264 2497 dbSNP
rs891553731 2510 dbSNP
rs150563550 2511 dbSNP
rs1376086115 2512 dbSNP
rs1175663434 2514 dbSNP
rs1434092285 2515 dbSNP
rs1021488112 2519 dbSNP
rs1187216053 2538 dbSNP
rs569107706 2544 dbSNP
rs1249198108 2550 dbSNP
rs982670593 2553 dbSNP
rs1465882853 2560 dbSNP
rs561231295 2565 dbSNP
rs1035642413 2570 dbSNP
rs960694711 2575 dbSNP
rs992174458 2577 dbSNP
rs908373011 2578 dbSNP
rs1364297487 2580 dbSNP
rs1026782616 2590 dbSNP
rs1450091571 2591 dbSNP
rs1400211444 2594 dbSNP
rs950842075 2600 dbSNP
rs1466799077 2604 dbSNP
rs867727848 2606 dbSNP
rs1379730528 2607 dbSNP
rs985340158 2614 dbSNP
rs74463673 2621 dbSNP
rs1391278703 2627 dbSNP
rs943567165 2629 dbSNP
rs1040824193 2634 dbSNP
rs531445934 2635 dbSNP
rs1253535737 2645 dbSNP
rs899559183 2646 dbSNP
rs1199520486 2648 dbSNP
rs1483334617 2649 dbSNP
rs1282039058 2656 dbSNP
rs1426564886 2660 dbSNP
rs536355 2661 dbSNP
rs1298206607 2666 dbSNP
rs1230582493 2667 dbSNP
rs1338765416 2672 dbSNP
rs189432170 2675 dbSNP
rs749032748 2676 dbSNP
rs932948817 2680 dbSNP
rs193122493 2681 dbSNP
rs757881554 2695 dbSNP
rs559168421 2697 dbSNP
rs1429473015 2699 dbSNP
rs891518029 2717 dbSNP
rs777292521 2723 dbSNP
rs1368402682 2725 dbSNP
rs1346585023 2726 dbSNP
rs947140205 2734 dbSNP
rs1010229537 2737 dbSNP
rs577530531 2740 dbSNP
rs1259132369 2747 dbSNP
rs1179620583 2751 dbSNP
rs185318031 2755 dbSNP
rs906716790 2760 dbSNP
rs1197482278 2762 dbSNP
rs190270404 2771 dbSNP
rs1264811629 2772 dbSNP
rs1354455312 2773 dbSNP
rs17094941 2775 dbSNP
rs1342379288 2788 dbSNP
rs1286655778 2800 dbSNP
rs959431855 2802 dbSNP
rs973459767 2804 dbSNP
rs1482632354 2805 dbSNP
rs1310167802 2819 dbSNP
rs1403967173 2822 dbSNP
rs116250545 2824 dbSNP
rs1013975468 2827 dbSNP
rs1457941921 2835 dbSNP
rs952700746 2836 dbSNP
rs1156490759 2840 dbSNP
rs1252660736 2845 dbSNP
rs1419604193 2858 dbSNP
rs1186152663 2863 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000370894.5 | 3UTR | UCAAGAUUCUUUUUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000370894.5 | 3UTR | UCAAGAUUCUUUUUAAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE19350 CNS germ cell tumors -0.751 2.4e-3 -0.147 3.2e-1 12 Click to see details
GSE26953 Aortic valvular endothelial cells 0.452 1.3e-2 0.417 2.1e-2 24 Click to see details
GSE38226 Liver fibrosis 0.411 3.2e-2 0.373 4.8e-2 21 Click to see details
GSE27834 Pluripotent stem cells -0.352 9.1e-2 -0.306 1.2e-1 16 Click to see details
GSE14794 Lymphoblastoid cells -0.092 1.9e-1 -0.114 1.4e-1 90 Click to see details
GSE28544 Breast cancer -0.161 2.3e-1 -0.185 1.9e-1 24 Click to see details
GSE21849 B cell lymphoma -0.138 2.4e-1 -0.127 2.6e-1 29 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.148 2.4e-1 -0.081 3.5e-1 25 Click to see details
GSE17498 Multiple myeloma -0.114 2.4e-1 -0.153 1.7e-1 40 Click to see details
GSE17306 Multiple myeloma 0.09 2.7e-1 0.400 2.2e-3 49 Click to see details
GSE21687 Ependynoma primary tumors -0.03 4.1e-1 -0.052 3.4e-1 64 Click to see details
GSE32688 Pancreatic cancer 0.027 4.4e-1 0.067 3.6e-1 32 Click to see details
GSE28260 Renal cortex and medulla -0.043 4.4e-1 0.214 2.4e-1 13 Click to see details
GSE15076 Monocyte-derived dendritic cells 0.106 4.5e-1 0.200 4.0e-1 4 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.006 4.9e-1 -0.359 6.0e-2 20 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.006 4.9e-1 -0.359 6.0e-2 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
109 hsa-miR-302b-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT088427 LCLAT1 lysocardiolipin acyltransferase 1 2 4
MIRT142406 TNRC6A trinucleotide repeat containing 6A 2 2
MIRT162006 TFRC transferrin receptor 2 2
MIRT170893 PURB purine rich element binding protein B 2 2
MIRT203348 CCNT2 cyclin T2 2 4
MIRT207353 TGOLN2 trans-golgi network protein 2 2 2
MIRT208232 CNBP CCHC-type zinc finger nucleic acid binding protein 2 4
MIRT214733 HSPA9 heat shock protein family A (Hsp70) member 9 2 2
MIRT254842 NUP50 nucleoporin 50 2 2
MIRT257285 FOXC1 forkhead box C1 2 2
MIRT338890 LLPH LLP homolog, long-term synaptic facilitation 2 2
MIRT400032 USP37 ubiquitin specific peptidase 37 2 2
MIRT404031 ATP9A ATPase phospholipid transporting 9A (putative) 2 8
MIRT405843 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 2
MIRT445847 FPGT fucose-1-phosphate guanylyltransferase 2 2
MIRT446350 EML6 echinoderm microtubule associated protein like 6 2 2
MIRT446649 BTBD7 BTB domain containing 7 2 2
MIRT447925 SCRN1 secernin 1 2 2
MIRT448575 PLCG1 phospholipase C gamma 1 2 2
MIRT463616 ZBTB33 zinc finger and BTB domain containing 33 2 4
MIRT465782 TMOD3 tropomodulin 3 2 2
MIRT470261 PRR14L proline rich 14 like 2 2
MIRT471090 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT475612 HMGB1 high mobility group box 1 2 2
MIRT476824 FNDC3A fibronectin type III domain containing 3A 2 2
MIRT483107 TYRP1 tyrosinase related protein 1 2 10
MIRT500537 XPO4 exportin 4 2 2
MIRT502525 EPHA2 EPH receptor A2 2 4
MIRT510989 PER1 period circadian clock 1 2 4
MIRT512540 ZNF793 zinc finger protein 793 2 4
MIRT513868 HOXA5 homeobox A5 2 2
MIRT520756 TFDP1 transcription factor Dp-1 2 6
MIRT524304 CTC1 CST telomere replication complex component 1 2 8
MIRT526306 JAKMIP2 janus kinase and microtubule interacting protein 2 2 2
MIRT526378 LSAMP limbic system-associated membrane protein 2 2
MIRT527438 COL4A3 collagen type IV alpha 3 chain 2 2
MIRT527511 ZNF134 zinc finger protein 134 2 2
MIRT528068 HES2 hes family bHLH transcription factor 2 2 2
MIRT528367 ZMYM1 zinc finger MYM-type containing 1 2 4
MIRT531804 TFCP2L1 transcription factor CP2 like 1 2 2
MIRT532323 DUSP4 dual specificity phosphatase 4 2 2
MIRT532431 DHX33 DEAH-box helicase 33 2 2
MIRT534523 SAR1A secretion associated Ras related GTPase 1A 2 2
MIRT536660 INIP INTS3 and NABP interacting protein 2 2
MIRT538488 CLOCK clock circadian regulator 2 2
MIRT538593 CDK6 cyclin dependent kinase 6 2 2
MIRT539706 EIF3H eukaryotic translation initiation factor 3 subunit H 2 2
MIRT540306 GFPT1 glutamine--fructose-6-phosphate transaminase 1 2 2
MIRT546892 PURA purine rich element binding protein A 2 2
MIRT552738 YRDC yrdC N6-threonylcarbamoyltransferase domain containing 2 2
MIRT552781 YIPF6 Yip1 domain family member 6 2 2
MIRT553742 TBL1XR1 transducin beta like 1 X-linked receptor 1 2 4
MIRT553909 SUMO2 small ubiquitin-like modifier 2 2 2
MIRT554540 RRS1 ribosome biogenesis regulator homolog 2 2
MIRT555319 PPP2CB protein phosphatase 2 catalytic subunit beta 2 2
MIRT555512 PMEPA1 prostate transmembrane protein, androgen induced 1 2 2
MIRT556221 MB21D2 Mab-21 domain containing 2 2 2
MIRT556292 MAP3K5 mitogen-activated protein kinase kinase kinase 5 2 2
MIRT556606 LDOC1L retrotransposon Gag like 6 2 4
MIRT556901 ISOC1 isochorismatase domain containing 1 2 2
MIRT557675 GATA6 GATA binding protein 6 2 2
MIRT560198 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT560493 BUB3 BUB3, mitotic checkpoint protein 2 2
MIRT566069 RCC2 regulator of chromosome condensation 2 2 2
MIRT568431 GDNF glial cell derived neurotrophic factor 2 2
MIRT570703 FAM69A family with sequence similarity 69 member A 2 2
MIRT571705 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough 2 2
MIRT573152 ITGA9 integrin subunit alpha 9 2 2
MIRT574410 TFAP2A transcription factor AP-2 alpha 2 2
MIRT614823 PVRL4 nectin cell adhesion molecule 4 2 2
MIRT616507 COX7A2L cytochrome c oxidase subunit 7A2 like 2 2
MIRT618301 COL4A4 collagen type IV alpha 4 chain 2 2
MIRT621188 FAM153B family with sequence similarity 153 member B 2 2
MIRT621594 WT1 Wilms tumor 1 2 2
MIRT623814 GGCX gamma-glutamyl carboxylase 2 2
MIRT624407 CCDC171 coiled-coil domain containing 171 2 2
MIRT625136 CKAP2L cytoskeleton associated protein 2 like 2 2
MIRT626121 MRRF mitochondrial ribosome recycling factor 2 2
MIRT626874 AP3B1 adaptor related protein complex 3 beta 1 subunit 2 2
MIRT627874 PAN2 PAN2 poly(A) specific ribonuclease subunit 2 2
MIRT633670 FAM53B family with sequence similarity 53 member B 2 2
MIRT634285 SYAP1 synapse associated protein 1 2 2
MIRT640925 POU2F1 POU class 2 homeobox 1 2 2
MIRT642028 MYADM myeloid associated differentiation marker 2 2
MIRT643031 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 2 2
MIRT646122 SLC26A9 solute carrier family 26 member 9 2 2
MIRT646245 SNAP47 synaptosome associated protein 47 2 2
MIRT652457 TMEM2 transmembrane protein 2 2 2
MIRT657018 KCNK5 potassium two pore domain channel subfamily K member 5 2 2
MIRT660586 APP amyloid beta precursor protein 2 2
MIRT664316 CD209 CD209 molecule 2 2
MIRT667113 OLA1 Obg like ATPase 1 2 2
MIRT668773 DCP2 decapping mRNA 2 2 2
MIRT698430 TM4SF1 transmembrane 4 L six family member 1 2 2
MIRT700216 REL REL proto-oncogene, NF-kB subunit 2 2
MIRT710498 CAPRIN1 cell cycle associated protein 1 2 2
MIRT711836 AMOTL2 angiomotin like 2 2 2
MIRT713226 GPR75 G protein-coupled receptor 75 2 2
MIRT714415 TBC1D16 TBC1 domain family member 16 2 2
MIRT714490 HSPA4 heat shock protein family A (Hsp70) member 4 2 2
MIRT715254 F9 coagulation factor IX 2 2
MIRT716250 PALM2 paralemmin 2 2 2
MIRT717261 BMPR2 bone morphogenetic protein receptor type 2 2 2
MIRT717730 FGF1 fibroblast growth factor 1 2 2
MIRT719262 CD44 CD44 molecule (Indian blood group) 2 2
MIRT719398 SLC15A4 solute carrier family 15 member 4 2 2
MIRT720653 TMEM218 transmembrane protein 218 2 2
MIRT720777 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough 2 2
MIRT722059 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-302b Epirubicin approved 41867 Microarray osteosarcoma cells 23845851 2013 down-regualted
miR-302b Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 up-regulated
miR-302b 1,2,6-Tri-O-galloyl-beta-D-glucopyranose NULL NULL Microarray HepG2 hepatocarcinoma cells. 22506400 2011 down-regulated
miR-302b (S)-3,5-dihydroxyphenylglycine (DHPG) NULL 443586 Quantitative real-time PCR mouse brain 22309833 2012 down-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-302b Cisplatin 5460033 NSC119875 approved resistant cell line (CIS)
hsa-miR-302b-5p Paclitaxel 36314 NSC125973 approved sensitive High Laryngeal Cancer cell line (Hep2)
hsa-miR-302b-5p Celastrol 12302620 NSC70931 sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Docetaxel 148124 NSC628503 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Doxorubicin 31703 NSC123127 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Taxol 36314 NSC125973 approved sensitive Low Gastric Cancer cell line (AGS)
hsa-miR-302b-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (HCC827)
hsa-miR-302b-5p Fluorouracil 3385 NSC19893 approved resistant cell line (KM12C) (72 h)
hsa-miR-302b-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-302b-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-302b-5p Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

Error report submission