miRTarBase - #MIRT445880


—
pre-miRNA Information
pre-miRNA hsa-mir-4271   
Genomic Coordinates chr3: 49274120 - 49274186
Description Homo sapiens miR-4271 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-4271
Sequence 39| GGGGGAAGAAAAGGUGGGG |57
Evidence Experimental
Experiments SOLiD
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30481495 1 COSMIC
COSN31532060 5 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs760829741 1 dbSNP
rs1277951968 2 dbSNP
rs189148716 3 dbSNP
rs757021935 4 dbSNP
rs1285201145 6 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol WBP1L   
Synonyms C10orf26, OPA1L, OPAL1
Description WW domain binding protein 1 like
Transcript NM_001083913   
Other Transcripts NM_017787   
Expression
Putative miRNA Targets on WBP1L
3'UTR of WBP1L
(miRNA target sites are highlighted)		 
>WBP1L|NM_001083913|3'UTR
   1 AGCAGGTCCTGCCAGCACCCAGCAACTTGGCAAAGCAACCAGGGTAGGGGAGAACCACGAGAGAAGCATTAAGTGACTTT
  81 CAAAGACTTTCAGAGTACAGCCACTTGGTTCCTTTTTGTTTGTTTTCCTTCTCCTCTCCTGCATTTTCCTCCATCTCCAG
 161 GTACAGTTCGGGGTGTGGATGCCTCTTCCTCCACAAGGGCACAGTGTTGTGGAGGGCTAAGTTGGTTCTGTGACTCATTC
 241 CTCATACCCTAACTCCATCTCCTTTCTTTAAAGTCAAATCTCACCTACCTGTTTGGGTCAGAGAGATGTGTTTTAAAAGC
 321 CCCCAAGGAAGGAGGCTGGGACTGTGCCCTGACATGATTCTTGGTGATGGAATAGGTTTGTGCTCTGATTCTAGTTTAAG
 401 AGAACGTTGCTGTATCTCAGTCCAGGAGAGGCAGCCCATCTTGGCCCTGGATGAAGAAGGAAACCCACAGAGGCCCAGGG
 481 CTTGTCATTGGGCTGCCAGTGTCTGCCAAGCCAGCATTGAGCTAATCCTGTGGGAGGATGAGAGCTACTGGGCCGTTGTA
 561 TGATAGGTTGGTAGGGGCTTGTTGATCTGTCAAATTCCAGGTGACAAGATCTATGCACCCCATGCGTCCTTGAGGGGCCT
 641 CTTCCCCGCAGGCTCTGGCTGGCCGCAGGCTGGTTCTGGTGTGAAAGGTTATACTGCCTTTTCTTTGTTTGTTTGTTTTT
 721 TTCTCTAAAAACAAACAGCAAAAGACAGCTGAAAACAAGAACTTCACCGGTGGGCAGGCAAGAATTCTCTTCTGGAAAAT
 801 GACGTTTGTGGCTCTTTCCCAAGTTGGCCTTCAAAGAGCCTGCCTGCTGTTGAGCCAGAAGATGTCTCGTGTGAAGGCTG
 881 GGGTGGCGGCTGTCTTGGAACCTCTGTGAGCAGGAGGCCCTAAGCCGCAGCAGTGGATAGAGGTGCAGCTCTCTGCCTCT
 961 CTGCCCTTTGGTCTGTGTTCACAGGTGACCCGTGTCAGCCTGCATCGCAAGCACACACCCTGCGGGCCTTCAAGTCTCAC
1041 TGTTCCGTATGAGGAAACAGACAGCGGACTGAGGAAGCGATGGCCCCAGAGAAAGGGCCCCTGTAGCCTGGCTCTCACAC
1121 AGTATTTTATCTTTGATTCTGAATAAATATTTTTTGTGGGGTTTTTTTTTTTTTTTTGGTGGCAGTTGTTTGTTTTAAAC
1201 TGACCACTTGGAAGAAACACCTTGGTTATCTGTGGTTTTCATGCCTTGTCCCTGCCTCTACCCCCACCCCTTTTGAGTCG
1281 GGTGACTCATTTTTCTGTGTAGAGACTCGGTGGCCCAGGCAGGAGGTGAAAGCAGCCATCCGGAAGGCCCTGGGGACCCT
1361 TGTGCCTGTTGCTCGCCTTCAGGTCACCAGCTGAGCTGCGATAGGAAAATCTGAATGGAGGCAGCAAACAGCCAAAACAA
1441 ACATTCCCCACCCGGCCCTGTGCATATGAAGTCTTTCTTCCCCCAACTCTTGAACGATGATGATATTCAGACGAAGCATT
1521 GATGTTATGGAAGAAAGAAAGAAACAAACAAAATATATATATATATGTCCAAAAACAGACAAATCCAAGGGTGTGAGGTA
1601 AACGAGTGTCTGCATTTAGATTCCACAAAACCAAAATCCATGTTGAACAAAGTTAAGTCCGTACACAGTGACTTTTTGGG
1681 TGAGCCGTGTGTGTCTGTCTGTTGTGTGTGTGCCTCAAGCCCTGTTTTCCTGTGAAGATACTTTGAGTGGCAGCCATTCT
1761 CTCCACGTGAACCACACGTCTGGAGCACAGACAGGCCTCTCAAGGTCATTGATCTTACGCATTTACTGTTTACCGAACAA
1841 ATGTCTGACTGTGTACTCGGGTGTACTCCGCAGCATTGTCGACTGCAGTCCCCTGTGTTTGCCAGAGATACTGTGCTCGA
1921 AGTAGAGGTTTTACTCTACTCATCACTGCGATTTGCACATTGCTCCGTGGACACTCGGAGGCCTGCGTTCTGTTCCCTAT
2001 AAATGGAAGCGTGCTCTGAGCCTGTCTGCCTCCCTCGGCTGCTGCTGGTCCTCAGTACCAGCGCCCGGGGGTGTCCACAA
2081 CCACTTGGGACAGAAGAAGGTGGAATTTCAGACAGAAGCTTGACTGGGTCTTCAATGACAGGCTTGGACTAGCTGTGGCC
2161 CAGACATCGGCCCTGCCCAGAATTGCCAGGAGGAGGCTTTGCAGGCTCTAGAGGAGCCGCAGGGCCTGCCTGCCTCTGGT
2241 GAGTCCAACAGGCACAAGCAAGCTGGCGTGTGGCCAGAGGTAGCCGGAGTGTGTCACAGCCCCTCAGATGCCTTTCCTTC
2321 CACCTTTTTTTATTTTTTAAGAATCCCAAATAACTCACTGAAGTGTCTCAAAGGCGAACAAGTTTTACCAAAATGAATCC
2401 TTTTTCAGTTAACAGATCAAATGGATGAGTTCTGAGCCTCTCAAGTTCCTTTCCCCAGTTAGAGTGGGGAACTGGGCAAG
2481 TGTTAACTGTGGGACTCACTGCAGCGTCCTATCCTAAAGGCACGAGAAGACGGAAATGCAACCTGCGGAGCTGGGCTTGG
2561 TTCCCAGGTCACAGTTTGGCCCCCGCTACAGGATGCTGCCCTGCTCAGAGAGAGATTTAATAGGGAGCTGAAGGAATCGT
2641 TAGGGGGCCAGGGAGATGTGACTGAGGCTGGCTTTCCACGTGAATGAGACGGGGTCGGTGGAGGGTTTGGTGCTACAGCC
2721 AGTCAGAAGATTTGCAAATGCGAACACATTCCTGTGTGAGGCACGTTACCCTTTGTCAGTTATTGTGAATATGTGTATTT
2801 TAAGCAATAAGATTCAGCTGGTCAGACTTTTCTGGGCAGTCTCAGTGACGCATTTCCTGTGCTGTGATTGTTCTGAAGAC
2881 AGAGTGGCTCTAACCACTGTGAGAAGCCCAAATAAAAATTGATCCCAAAAATGAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gggguggaAAAGAAGGGGg 5'
                  |||||||||| 
Target 5' atgaagtcTTTCTTCCCCc 3'
 1466 - 1484 155.00 -19.10
2 
miRNA  3' gggguggaaaAGAAGGGGg 5'
                    |||||||| 
Target 5' ttgaggggccTCTTCCCCg 3'
 630 - 648 145.00 -14.20
3 
miRNA  3' ggggugGAAAAGAAGGGGg 5'
                :||| ||||:|| 
Target 5' tgtttgTTTTCCTTCTCCt 3'
 117 - 135 137.00 -11.40
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30472675 51 COSMIC
COSN30525827 60 COSMIC
COSN27937553 395 COSMIC
COSN21963754 726 COSMIC
COSN4691179 726 COSMIC
COSN31596310 1014 COSMIC
COSN31513208 1066 COSMIC
COSN31489901 1068 COSMIC
COSN8525619 1115 COSMIC
COSN8638976 1163 COSMIC
COSN28768292 1242 COSMIC
COSN31479420 1285 COSMIC
COSN15804661 1300 COSMIC
COSN31601235 1393 COSMIC
COSN28802595 1475 COSMIC
COSN31591438 1496 COSMIC
COSN32064947 1505 COSMIC
COSN32064948 1506 COSMIC
COSN31545684 1554 COSMIC
COSN24875188 1581 COSMIC
COSN26638878 1620 COSMIC
COSN26553589 1653 COSMIC
COSN31484572 1746 COSMIC
COSN31484585 1749 COSMIC
COSN23435636 1768 COSMIC
COSN31487758 1819 COSMIC
COSN28065982 1839 COSMIC
COSN31544486 1858 COSMIC
COSN26551069 1871 COSMIC
COSN26677083 1902 COSMIC
COSN28766002 2069 COSMIC
COSN20107507 2332 COSMIC
COSN31530691 2743 COSMIC
COSN28670779 2783 COSMIC
COSN31607779 2850 COSMIC
COSN26466184 2851 COSMIC
COSN22074104 2923 COSMIC
rs6892 2783 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1204512455 4 dbSNP
rs1247696857 6 dbSNP
rs866345900 9 dbSNP
rs1448031962 10 dbSNP
rs1195863785 11 dbSNP
rs760642936 16 dbSNP
rs1015091202 20 dbSNP
rs1171435889 22 dbSNP
rs766408753 24 dbSNP
rs1470695255 29 dbSNP
rs1336962113 33 dbSNP
rs776715848 41 dbSNP
rs1432544305 42 dbSNP
rs1250930290 45 dbSNP
rs759980971 49 dbSNP
rs1206910481 53 dbSNP
rs750678879 59 dbSNP
rs1004404066 60 dbSNP
rs1369568585 78 dbSNP
rs1037174386 83 dbSNP
rs901433086 86 dbSNP
rs998408647 88 dbSNP
rs1442075805 92 dbSNP
rs1161972709 94 dbSNP
rs765551868 95 dbSNP
rs181573563 98 dbSNP
rs375968985 98 dbSNP
rs1028445307 101 dbSNP
rs953727648 103 dbSNP
rs1413242959 104 dbSNP
rs1466188784 106 dbSNP
rs1003155801 108 dbSNP
rs1174359143 119 dbSNP
rs1011100303 131 dbSNP
rs1022025077 138 dbSNP
rs546780007 150 dbSNP
rs1330978137 154 dbSNP
rs571819678 156 dbSNP
rs1184073982 157 dbSNP
rs766453882 165 dbSNP
rs977905423 171 dbSNP
rs1443683877 172 dbSNP
rs538710041 176 dbSNP
rs959136294 183 dbSNP
rs112660357 189 dbSNP
rs1022059580 190 dbSNP
rs968261250 197 dbSNP
rs977920668 200 dbSNP
rs1313667054 201 dbSNP
rs1416818191 206 dbSNP
rs1198684240 208 dbSNP
rs575515304 210 dbSNP
rs148084378 216 dbSNP
rs752714095 217 dbSNP
rs1456133766 219 dbSNP
rs535918300 222 dbSNP
rs1400112600 225 dbSNP
rs555049071 236 dbSNP
rs190292464 249 dbSNP
rs540544037 250 dbSNP
rs113317311 254 dbSNP
rs1037204118 255 dbSNP
rs1239925638 264 dbSNP
rs901338321 272 dbSNP
rs932071340 277 dbSNP
rs1049582895 278 dbSNP
rs34493252 287 dbSNP
rs1448092282 290 dbSNP
rs887872217 304 dbSNP
rs1212247765 306 dbSNP
rs11191401 316 dbSNP
rs1294272232 321 dbSNP
rs1375256830 322 dbSNP
rs1036523492 323 dbSNP
rs1230304568 336 dbSNP
rs907462976 336 dbSNP
rs1478206032 352 dbSNP
rs1269678408 390 dbSNP
rs1169996027 391 dbSNP
rs1421775743 392 dbSNP
rs1003105342 400 dbSNP
rs1389318009 406 dbSNP
rs777616246 407 dbSNP
rs1393530003 409 dbSNP
rs1165370937 413 dbSNP
rs1406740749 426 dbSNP
rs79771646 433 dbSNP
rs1185449257 435 dbSNP
rs1475436054 439 dbSNP
rs902277199 446 dbSNP
rs112982754 454 dbSNP
rs1192363959 456 dbSNP
rs1468420734 456 dbSNP
rs1274273101 457 dbSNP
rs1224155263 462 dbSNP
rs1395212605 468 dbSNP
rs562590718 469 dbSNP
rs1272500698 476 dbSNP
rs1215352500 477 dbSNP
rs1367501762 478 dbSNP
rs1332153050 484 dbSNP
rs1022422752 485 dbSNP
rs967797363 489 dbSNP
rs1317462236 490 dbSNP
rs1293906587 495 dbSNP
rs999349511 500 dbSNP
rs960558576 501 dbSNP
rs1211974625 528 dbSNP
rs991169680 532 dbSNP
rs150576265 539 dbSNP
rs565253220 540 dbSNP
rs965933728 554 dbSNP
rs1254112928 555 dbSNP
rs375523822 556 dbSNP
rs921884107 570 dbSNP
rs1225028972 572 dbSNP
rs182874679 575 dbSNP
rs1344575161 582 dbSNP
rs1483152356 583 dbSNP
rs1278287928 584 dbSNP
rs532492988 586 dbSNP
rs1233581825 588 dbSNP
rs776386364 600 dbSNP
rs559754181 603 dbSNP
rs531070251 604 dbSNP
rs1370975224 614 dbSNP
rs940125723 622 dbSNP
rs1193047265 626 dbSNP
rs1371954845 627 dbSNP
rs1310558382 628 dbSNP
rs972804156 629 dbSNP
rs528717485 630 dbSNP
rs934156298 631 dbSNP
rs187512356 635 dbSNP
rs1417839550 644 dbSNP
rs1377250334 645 dbSNP
rs1178069567 646 dbSNP
rs1407797425 646 dbSNP
rs1050324691 648 dbSNP
rs928838743 649 dbSNP
rs769408261 657 dbSNP
rs775057760 661 dbSNP
rs762378760 665 dbSNP
rs767845926 666 dbSNP
rs1400612764 671 dbSNP
rs1043413978 680 dbSNP
rs1306032341 685 dbSNP
rs571720352 688 dbSNP
rs1228721742 689 dbSNP
rs1337840404 694 dbSNP
rs902182094 695 dbSNP
rs1413755173 697 dbSNP
rs544359031 704 dbSNP
rs1304074718 710 dbSNP
rs764031975 716 dbSNP
rs1345053980 724 dbSNP
rs1034714671 729 dbSNP
rs1301583697 731 dbSNP
rs1473751598 732 dbSNP
rs1311198407 735 dbSNP
rs1416097853 739 dbSNP
rs773640033 747 dbSNP
rs532755338 760 dbSNP
rs1187568294 764 dbSNP
rs17115073 769 dbSNP
rs1012095837 770 dbSNP
rs1354859993 777 dbSNP
rs1484861826 781 dbSNP
rs551103825 783 dbSNP
rs1260025627 785 dbSNP
rs894728079 790 dbSNP
rs1209158055 793 dbSNP
rs1330998421 796 dbSNP
rs1291195860 800 dbSNP
rs1012289751 804 dbSNP
rs1261622905 805 dbSNP
rs1314265587 809 dbSNP
rs1379974022 814 dbSNP
rs1361904240 815 dbSNP
rs1321848570 820 dbSNP
rs1023856987 825 dbSNP
rs1490871760 830 dbSNP
rs530028605 840 dbSNP
rs1458610933 847 dbSNP
rs284858 849 dbSNP
rs192324536 850 dbSNP
rs1016980923 869 dbSNP
rs999298880 870 dbSNP
rs1030826298 871 dbSNP
rs961353981 881 dbSNP
rs965838940 883 dbSNP
rs1382003496 886 dbSNP
rs997376743 888 dbSNP
rs1420060591 889 dbSNP
rs1029292749 902 dbSNP
rs1266802503 912 dbSNP
rs1224745672 913 dbSNP
rs1306461237 918 dbSNP
rs953356834 927 dbSNP
rs34102073 928 dbSNP
rs566877120 939 dbSNP
rs1325671026 949 dbSNP
rs1369342851 949 dbSNP
rs140702833 949 dbSNP
rs934038048 949 dbSNP
rs185486130 952 dbSNP
rs1166413847 958 dbSNP
rs189161259 960 dbSNP
rs962091838 965 dbSNP
rs284857 976 dbSNP
rs928743348 990 dbSNP
rs1170492991 991 dbSNP
rs551986382 992 dbSNP
rs1251009256 1003 dbSNP
rs1197938828 1005 dbSNP
rs1055974294 1007 dbSNP
rs768156445 1008 dbSNP
rs374732721 1025 dbSNP
rs1043946206 1027 dbSNP
rs1193772154 1029 dbSNP
rs1341016433 1034 dbSNP
rs1274743196 1036 dbSNP
rs1229901680 1041 dbSNP
rs1346373916 1046 dbSNP
rs947699758 1048 dbSNP
rs1333240296 1050 dbSNP
rs1327254998 1054 dbSNP
rs544370375 1066 dbSNP
rs935016955 1067 dbSNP
rs1309957919 1068 dbSNP
rs1432898496 1070 dbSNP
rs1394522887 1073 dbSNP
rs556129332 1074 dbSNP
rs1171971848 1078 dbSNP
rs1056029568 1079 dbSNP
rs1378177250 1080 dbSNP
rs1379223816 1082 dbSNP
rs758374394 1095 dbSNP
rs903549539 1101 dbSNP
rs139573926 1102 dbSNP
rs1206722459 1103 dbSNP
rs1484428665 1115 dbSNP
rs1277268079 1116 dbSNP
rs1052159634 1121 dbSNP
rs1201589692 1122 dbSNP
rs901595140 1123 dbSNP
rs1309616723 1130 dbSNP
rs1284541564 1135 dbSNP
rs1228114044 1142 dbSNP
rs1351368979 1150 dbSNP
rs1323970420 1157 dbSNP
rs1222410072 1158 dbSNP
rs541531940 1159 dbSNP
rs1334915659 1162 dbSNP
rs1414979989 1162 dbSNP
rs34921785 1162 dbSNP
rs397762873 1162 dbSNP
rs576430613 1162 dbSNP
rs879091952 1162 dbSNP
rs187127311 1163 dbSNP
rs1412398531 1164 dbSNP
rs1197832673 1168 dbSNP
rs1238991846 1178 dbSNP
rs61870804 1178 dbSNP
rs1440118217 1179 dbSNP
rs1177727000 1182 dbSNP
rs1378419027 1183 dbSNP
rs1425412334 1185 dbSNP
rs1444657724 1198 dbSNP
rs1282721021 1216 dbSNP
rs1208617342 1222 dbSNP
rs1330301529 1224 dbSNP
rs747475479 1229 dbSNP
rs1028866784 1234 dbSNP
rs284856 1242 dbSNP
rs1378637072 1249 dbSNP
rs887599527 1256 dbSNP
rs776966059 1262 dbSNP
rs1316184193 1266 dbSNP
rs1342229977 1266 dbSNP
rs1456621324 1276 dbSNP
rs1016151469 1280 dbSNP
rs1400521292 1286 dbSNP
rs1446533048 1304 dbSNP
rs1307445753 1306 dbSNP
rs1014828909 1309 dbSNP
rs527310648 1309 dbSNP
rs1473516310 1310 dbSNP
rs1381793540 1315 dbSNP
rs1229453550 1316 dbSNP
rs1239836278 1316 dbSNP
rs1312610435 1322 dbSNP
rs1320044536 1324 dbSNP
rs1220505963 1325 dbSNP
rs1258975901 1327 dbSNP
rs1196726543 1328 dbSNP
rs1457435121 1329 dbSNP
rs1465738828 1331 dbSNP
rs756818509 1332 dbSNP
rs284855 1335 dbSNP
rs1236205996 1336 dbSNP
rs1290816822 1342 dbSNP
rs961997473 1343 dbSNP
rs1182426528 1351 dbSNP
rs1337589010 1355 dbSNP
rs1296949631 1357 dbSNP
rs1412938181 1359 dbSNP
rs1434370771 1372 dbSNP
rs376400084 1375 dbSNP
rs1322325032 1376 dbSNP
rs1433977600 1383 dbSNP
rs1030040502 1388 dbSNP
rs1346391500 1390 dbSNP
rs955524441 1397 dbSNP
rs1035704263 1401 dbSNP
rs144375894 1403 dbSNP
rs992062288 1412 dbSNP
rs1423905813 1413 dbSNP
rs1464841349 1416 dbSNP
rs187244332 1426 dbSNP
rs1488384286 1430 dbSNP
rs1247635701 1444 dbSNP
rs1224131424 1447 dbSNP
rs1436289339 1452 dbSNP
rs765523480 1455 dbSNP
rs979546582 1456 dbSNP
rs916102781 1461 dbSNP
rs1299783428 1465 dbSNP
rs947613620 1474 dbSNP
rs284854 1475 dbSNP
rs924874271 1487 dbSNP
rs934944146 1488 dbSNP
rs935552679 1490 dbSNP
rs1056060583 1496 dbSNP
rs917570631 1496 dbSNP
rs1052135061 1497 dbSNP
rs1302812133 1498 dbSNP
rs1377563283 1499 dbSNP
rs947863053 1511 dbSNP
rs901591882 1513 dbSNP
rs373820375 1514 dbSNP
rs1193221491 1517 dbSNP
rs1050673593 1522 dbSNP
rs1317368289 1525 dbSNP
rs1206098328 1529 dbSNP
rs1484105328 1529 dbSNP
rs11540691 1534 dbSNP
rs11540690 1538 dbSNP
rs1208014353 1542 dbSNP
rs745503143 1542 dbSNP
rs1311462636 1543 dbSNP
rs1220689691 1546 dbSNP
rs763103773 1546 dbSNP
rs1280965130 1549 dbSNP
rs1348280060 1550 dbSNP
rs542718661 1550 dbSNP
rs1210510611 1552 dbSNP
rs1236857484 1553 dbSNP
rs1300563154 1553 dbSNP
rs1484615923 1554 dbSNP
rs284853 1555 dbSNP
rs1263347305 1556 dbSNP
rs1016097423 1557 dbSNP
rs997433609 1558 dbSNP
rs1168151359 1565 dbSNP
rs1411659762 1566 dbSNP
rs1426786336 1584 dbSNP
rs1183239218 1590 dbSNP
rs370123869 1604 dbSNP
rs373284277 1605 dbSNP
rs1482896982 1624 dbSNP
rs1256477831 1626 dbSNP
rs1357931241 1634 dbSNP
rs1007000966 1636 dbSNP
rs751724973 1640 dbSNP
rs1402467935 1644 dbSNP
rs1035691488 1646 dbSNP
rs1018794043 1649 dbSNP
rs1394898476 1659 dbSNP
rs566840446 1661 dbSNP
rs534172163 1662 dbSNP
rs772655509 1667 dbSNP
rs1276861833 1668 dbSNP
rs1459030039 1669 dbSNP
rs34316323 1673 dbSNP
rs553725893 1682 dbSNP
rs1023483899 1688 dbSNP
rs924073064 1690 dbSNP
rs1258327437 1692 dbSNP
rs968890388 1696 dbSNP
rs956990198 1698 dbSNP
rs992810118 1705 dbSNP
rs1209060619 1707 dbSNP
rs1330798675 1725 dbSNP
rs917619140 1729 dbSNP
rs1243583609 1731 dbSNP
rs1345455508 1733 dbSNP
rs1314245241 1742 dbSNP
rs1218768169 1747 dbSNP
rs978927172 1751 dbSNP
rs1365026083 1753 dbSNP
rs1321666718 1760 dbSNP
rs1437671025 1761 dbSNP
rs1388989001 1766 dbSNP
rs570718224 1767 dbSNP
rs934940752 1768 dbSNP
rs980438348 1773 dbSNP
rs761140445 1777 dbSNP
rs537789530 1778 dbSNP
rs1389429151 1779 dbSNP
rs1189014558 1796 dbSNP
rs1264984116 1802 dbSNP
rs147384510 1806 dbSNP
rs1488564713 1809 dbSNP
rs897656109 1819 dbSNP
rs574293579 1820 dbSNP
rs910298952 1848 dbSNP
rs1052100574 1850 dbSNP
rs1159822844 1851 dbSNP
rs139588190 1852 dbSNP
rs776894075 1858 dbSNP
rs553464807 1859 dbSNP
rs1037532980 1860 dbSNP
rs1387570706 1862 dbSNP
rs897742419 1867 dbSNP
rs1018242207 1870 dbSNP
rs1429143632 1876 dbSNP
rs569138475 1881 dbSNP
rs571842754 1882 dbSNP
rs1476348673 1890 dbSNP
rs1000903986 1892 dbSNP
rs1197825554 1893 dbSNP
rs545761441 1893 dbSNP
rs1433430729 1908 dbSNP
rs759746195 1911 dbSNP
rs1270540378 1914 dbSNP
rs1202548317 1917 dbSNP
rs1331903671 1920 dbSNP
rs1482472410 1929 dbSNP
rs563966625 1936 dbSNP
rs1274717380 1939 dbSNP
rs1436105051 1942 dbSNP
rs1057044739 1950 dbSNP
rs1343411609 1951 dbSNP
rs1234362175 1953 dbSNP
rs1333081353 1956 dbSNP
rs1286734343 1959 dbSNP
rs1409423473 1965 dbSNP
rs1475728106 1966 dbSNP
rs1273279352 1967 dbSNP
rs577426111 1968 dbSNP
rs192202666 1971 dbSNP
rs752847900 1973 dbSNP
rs1023009911 1975 dbSNP
rs969215418 1977 dbSNP
rs762905220 1978 dbSNP
rs11191403 1979 dbSNP
rs545703354 1987 dbSNP
rs956263561 1988 dbSNP
rs1291483494 1996 dbSNP
rs530335697 2006 dbSNP
rs969636339 2011 dbSNP
rs751431864 2012 dbSNP
rs1326167623 2028 dbSNP
rs1044347 2030 dbSNP
rs1266619443 2038 dbSNP
rs1228019441 2039 dbSNP
rs922865835 2051 dbSNP
rs971795494 2052 dbSNP
rs1250715674 2054 dbSNP
rs954366465 2059 dbSNP
rs1441964029 2063 dbSNP
rs1396526192 2065 dbSNP
rs1179598567 2067 dbSNP
rs986210002 2068 dbSNP
rs910295151 2069 dbSNP
rs1420617354 2072 dbSNP
rs941821584 2076 dbSNP
rs1391607437 2079 dbSNP
rs757178020 2082 dbSNP
rs1471547674 2085 dbSNP
rs1236364143 2097 dbSNP
rs1188929948 2101 dbSNP
rs1051577562 2116 dbSNP
rs1246588799 2118 dbSNP
rs1404807510 2119 dbSNP
rs184528341 2136 dbSNP
rs781131578 2139 dbSNP
rs1286657528 2145 dbSNP
rs1226797312 2151 dbSNP
rs1402670542 2152 dbSNP
rs1355800693 2160 dbSNP
rs536676347 2163 dbSNP
rs1057024515 2166 dbSNP
rs895724107 2169 dbSNP
rs1331714225 2170 dbSNP
rs1012884832 2171 dbSNP
rs1236860820 2176 dbSNP
rs1285856228 2181 dbSNP
rs1044824849 2187 dbSNP
rs1389066746 2195 dbSNP
rs1356480814 2201 dbSNP
rs904589380 2204 dbSNP
rs1227203792 2209 dbSNP
rs1163271151 2215 dbSNP
rs188383607 2219 dbSNP
rs560548144 2220 dbSNP
rs1458774652 2221 dbSNP
rs1031774035 2248 dbSNP
rs956170271 2251 dbSNP
rs998359945 2260 dbSNP
rs1388120786 2263 dbSNP
rs1029882626 2264 dbSNP
rs954477663 2265 dbSNP
rs1238022137 2268 dbSNP
rs985812943 2269 dbSNP
rs11540689 2275 dbSNP
rs910232333 2286 dbSNP
rs527838205 2287 dbSNP
rs1190272608 2294 dbSNP
rs970046448 2302 dbSNP
rs973095062 2303 dbSNP
rs919024685 2313 dbSNP
rs981042147 2316 dbSNP
rs1227549744 2320 dbSNP
rs1362470961 2321 dbSNP
rs1271645708 2322 dbSNP
rs1433864539 2324 dbSNP
rs3216007 2325 dbSNP
rs386372293 2325 dbSNP
rs398014663 2325 dbSNP
rs552532260 2326 dbSNP
rs75830196 2333 dbSNP
rs570764585 2334 dbSNP
rs993076635 2350 dbSNP
rs971702274 2358 dbSNP
rs1422104199 2366 dbSNP
rs145115365 2370 dbSNP
rs544734011 2373 dbSNP
rs919025480 2376 dbSNP
rs1330914290 2377 dbSNP
rs779804333 2380 dbSNP
rs954451871 2382 dbSNP
rs987713113 2404 dbSNP
rs910384809 2411 dbSNP
rs1307943435 2416 dbSNP
rs1274879994 2417 dbSNP
rs1395565321 2420 dbSNP
rs917164667 2426 dbSNP
rs1283581955 2428 dbSNP
rs755874588 2433 dbSNP
rs1406377930 2446 dbSNP
rs34897982 2453 dbSNP
rs1042939201 2454 dbSNP
rs925309150 2456 dbSNP
rs1336121870 2461 dbSNP
rs936692750 2466 dbSNP
rs1174438080 2473 dbSNP
rs1414303504 2474 dbSNP
rs748860784 2482 dbSNP
rs181211884 2494 dbSNP
rs1290830906 2498 dbSNP
rs1013631175 2502 dbSNP
rs1047039492 2505 dbSNP
rs375016574 2506 dbSNP
rs1002894946 2507 dbSNP
rs1207908446 2524 dbSNP
rs1311448368 2528 dbSNP
rs936006574 2532 dbSNP
rs1256996742 2533 dbSNP
rs1326574800 2540 dbSNP
rs1287186949 2542 dbSNP
rs563605034 2546 dbSNP
rs1374838109 2547 dbSNP
rs1301661845 2570 dbSNP
rs1447933302 2573 dbSNP
rs535254712 2578 dbSNP
rs768019607 2581 dbSNP
rs998358056 2583 dbSNP
rs1030284192 2585 dbSNP
rs553578997 2586 dbSNP
rs1455860495 2588 dbSNP
rs1007580603 2597 dbSNP
rs1017197983 2599 dbSNP
rs1160057574 2607 dbSNP
rs1421008341 2610 dbSNP
rs1265508281 2613 dbSNP
rs962990379 2621 dbSNP
rs1478174689 2622 dbSNP
rs1180111427 2623 dbSNP
rs954657390 2625 dbSNP
rs973045631 2626 dbSNP
rs1205277658 2628 dbSNP
rs1463294324 2633 dbSNP
rs34464671 2639 dbSNP
rs571798806 2640 dbSNP
rs910405331 2641 dbSNP
rs36069480 2648 dbSNP
rs1309954698 2654 dbSNP
rs1228259987 2657 dbSNP
rs561177650 2661 dbSNP
rs1339137870 2674 dbSNP
rs992672067 2680 dbSNP
rs917099943 2681 dbSNP
rs377463825 2691 dbSNP
rs1174052866 2692 dbSNP
rs925885884 2693 dbSNP
rs980403023 2694 dbSNP
rs934541927 2696 dbSNP
rs1052387533 2697 dbSNP
rs1185313441 2698 dbSNP
rs1447486067 2699 dbSNP
rs913899077 2700 dbSNP
rs1205429050 2701 dbSNP
rs1486606764 2703 dbSNP
rs557690811 2705 dbSNP
rs1046459947 2722 dbSNP
rs1220131263 2726 dbSNP
rs1359493779 2727 dbSNP
rs34311245 2735 dbSNP
rs1226819752 2742 dbSNP
rs36008178 2743 dbSNP
rs1296651516 2746 dbSNP
rs1384147379 2749 dbSNP
rs1388786724 2753 dbSNP
rs797011771 2755 dbSNP
rs1425426313 2758 dbSNP
rs14849 2765 dbSNP
rs899418131 2766 dbSNP
rs1277207319 2768 dbSNP
rs1372297073 2770 dbSNP
rs563162651 2771 dbSNP
rs112246081 2775 dbSNP
rs6892 2783 dbSNP
rs1007076147 2784 dbSNP
rs890116468 2785 dbSNP
rs1017100627 2790 dbSNP
rs898758998 2794 dbSNP
rs1293313593 2798 dbSNP
rs560704977 2816 dbSNP
rs532299770 2828 dbSNP
rs964787920 2830 dbSNP
rs527741917 2832 dbSNP
rs1329681849 2837 dbSNP
rs1300907471 2838 dbSNP
rs978573718 2850 dbSNP
rs1488673862 2851 dbSNP
rs1306192218 2871 dbSNP
rs1192976615 2880 dbSNP
rs1395629477 2881 dbSNP
rs1168392485 2891 dbSNP
rs3184159 2897 dbSNP
rs1463373227 2902 dbSNP
rs950458101 2911 dbSNP
rs1375704235 2912 dbSNP
rs1032765664 2920 dbSNP
rs1480521631 2922 dbSNP
rs1270425961 2924 dbSNP
rs34358084 2927 dbSNP
rs565031381 2927 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' ggGGUGGAAAAGAAGGGGg 5'
            :||  ||  :|||||| 
Target 5' --UCAAGUUCCUUUCCCCa 3'
 		1 - 17
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000369889.4 | 3UTR | UCAAGUUCCUUUCCCCAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
181 hsa-miR-4271 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT066209 MARCH9 membrane associated ring-CH-type finger 9 2 2
MIRT079367 CCDC137 coiled-coil domain containing 137 2 2
MIRT081183 MIDN midnolin 2 4
MIRT083278 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT086207 HOXD13 homeobox D13 2 2
MIRT133713 SKI SKI proto-oncogene 2 4
MIRT150653 SLC27A1 solute carrier family 27 member 1 2 2
MIRT159166 NRBP1 nuclear receptor binding protein 1 2 2
MIRT160059 TET3 tet methylcytosine dioxygenase 3 2 4
MIRT180856 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT181931 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT190628 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough 2 2
MIRT190654 PABPN1 poly(A) binding protein nuclear 1 2 2
MIRT196107 MPRIP myosin phosphatase Rho interacting protein 2 2
MIRT263248 SGPL1 sphingosine-1-phosphate lyase 1 2 2
MIRT321168 EIF4H eukaryotic translation initiation factor 4H 2 2
MIRT338624 SHMT2 serine hydroxymethyltransferase 2 2 2
MIRT366301 GDI1 GDP dissociation inhibitor 1 2 4
MIRT375172 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 2 2
MIRT441488 NCEH1 neutral cholesterol ester hydrolase 1 2 2
MIRT442333 WNT9B Wnt family member 9B 2 2
MIRT443889 CNKSR3 CNKSR family member 3 2 2
MIRT445880 WBP1L WW domain binding protein 1 like 2 2
MIRT449312 MRO maestro 2 2
MIRT449844 BCL2L13 BCL2 like 13 2 2
MIRT450304 DRAXIN dorsal inhibitory axon guidance protein 2 2
MIRT450515 EMX1 empty spiracles homeobox 1 2 2
MIRT451243 ZNF444 zinc finger protein 444 2 2
MIRT451713 OLR1 oxidized low density lipoprotein receptor 1 2 2
MIRT451792 TLR5 toll like receptor 5 2 2
MIRT451823 ALDH3B1 aldehyde dehydrogenase 3 family member B1 2 2
MIRT451906 ILK integrin linked kinase 2 2
MIRT452181 KIAA1456 KIAA1456 2 4
MIRT452242 TRAM1 translocation associated membrane protein 1 2 2
MIRT452544 ZNF467 zinc finger protein 467 2 2
MIRT452605 REPIN1 replication initiator 1 2 2
MIRT454505 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454657 FBXL18 F-box and leucine rich repeat protein 18 2 2
MIRT455354 KDM5C lysine demethylase 5C 2 2
MIRT455452 EPB41L4B erythrocyte membrane protein band 4.1 like 4B 2 2
MIRT455587 TAF12 TATA-box binding protein associated factor 12 2 2
MIRT456501 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 2 2
MIRT456815 PIGP phosphatidylinositol glycan anchor biosynthesis class P 2 2
MIRT457425 NOL10 nucleolar protein 10 2 2
MIRT457468 SLC35F6 solute carrier family 35 member F6 2 2
MIRT457660 SERINC1 serine incorporator 1 2 2
MIRT458231 NXPH3 neurexophilin 3 2 2
MIRT458374 ITM2C integral membrane protein 2C 2 2
MIRT458667 GPR35 G protein-coupled receptor 35 2 2
MIRT459665 VPS37C VPS37C, ESCRT-I subunit 2 2
MIRT459825 TPP1 tripeptidyl peptidase 1 2 2
MIRT460564 FEM1A fem-1 homolog A 2 2
MIRT460725 ASXL3 additional sex combs like 3, transcriptional regulator 2 2
MIRT461121 RAB36 RAB36, member RAS oncogene family 2 2
MIRT461529 C14orf1 ergosterol biosynthesis 28 homolog 2 2
MIRT461750 DDX11 DEAD/H-box helicase 11 2 2
MIRT462570 STS steroid sulfatase 2 2
MIRT462798 NTN1 netrin 1 2 2
MIRT463030 ZNF689 zinc finger protein 689 2 2
MIRT463991 WDTC1 WD and tetratricopeptide repeats 1 2 2
MIRT464684 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 2
MIRT465439 TP53 tumor protein p53 2 2
MIRT465512 PRICKLE4 prickle planar cell polarity protein 4 2 2
MIRT465649 TNPO2 transportin 2 2 10
MIRT465947 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 2
MIRT466028 TMEM189 transmembrane protein 189 2 2
MIRT468076 SHOC2 SHOC2, leucine rich repeat scaffold protein 2 6
MIRT468131 SH3PXD2A SH3 and PX domains 2A 2 2
MIRT468498 SESN2 sestrin 2 2 2
MIRT468879 RREB1 ras responsive element binding protein 1 2 2
MIRT469318 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 2 2
MIRT469558 RARA retinoic acid receptor alpha 2 2
MIRT469793 RAB15 RAB15, member RAS oncogene family 2 2
MIRT469896 PTRF caveolae associated protein 1 2 2
MIRT470235 PRRC2A proline rich coiled-coil 2A 2 2
MIRT470808 PLXND1 plexin D1 2 2
MIRT471597 PAQR5 progestin and adipoQ receptor family member 5 2 10
MIRT471710 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 2 2
MIRT471752 OGT O-linked N-acetylglucosamine (GlcNAc) transferase 2 2
MIRT472978 MRRF mitochondrial ribosome recycling factor 2 2
MIRT473538 MAX MYC associated factor X 2 2
MIRT473581 MAT2A methionine adenosyltransferase 2A 2 2
MIRT473970 LRRC58 leucine rich repeat containing 58 2 2
MIRT474223 LCOR ligand dependent nuclear receptor corepressor 2 4
MIRT474553 KLHDC3 kelch domain containing 3 2 2
MIRT474777 KIAA0895L KIAA0895 like 2 2
MIRT476042 GRSF1 G-rich RNA sequence binding factor 1 2 2
MIRT476438 GBA2 glucosylceramidase beta 2 2 2
MIRT477773 E2F3 E2F transcription factor 3 2 4
MIRT477946 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory 2 2
MIRT478782 CRTC2 CREB regulated transcription coactivator 2 2 2
MIRT479320 VPS72 vacuolar protein sorting 72 homolog 2 2
MIRT480405 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT480593 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase 2 2
MIRT480963 BBC3 BCL2 binding component 3 2 2
MIRT481127 AZIN1 antizyme inhibitor 1 2 4
MIRT481444 ARRB2 arrestin beta 2 2 2
MIRT481687 AR androgen receptor 2 2
MIRT481730 APH1A aph-1 homolog A, gamma-secretase subunit 2 2
MIRT482386 AEN apoptosis enhancing nuclease 2 2
MIRT482564 ABHD2 abhydrolase domain containing 2 2 2
MIRT482605 ABHD14B abhydrolase domain containing 14B 2 2
MIRT483256 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 2 4
MIRT483531 TAGLN2 transgelin 2 2 2
MIRT483840 UNC5B unc-5 netrin receptor B 2 4
MIRT483935 LENG8 leukocyte receptor cluster member 8 2 4
MIRT484414 SNX19 sorting nexin 19 2 2
MIRT484487 SLC9A1 solute carrier family 9 member A1 2 2
MIRT484609 SIX3 SIX homeobox 3 2 6
MIRT484703 RNF11 ring finger protein 11 2 2
MIRT485244 POGZ pogo transposable element derived with ZNF domain 2 2
MIRT485607 FOSL1 FOS like 1, AP-1 transcription factor subunit 2 4
MIRT485965 RTBDN retbindin 2 2
MIRT487308 GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein 2 2
MIRT487329 SREBF1 sterol regulatory element binding transcription factor 1 2 4
MIRT487410 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 2 2
MIRT487607 C20orf96 chromosome 20 open reading frame 96 2 2
MIRT487689 CDK14 cyclin dependent kinase 14 2 2
MIRT487787 GPR20 G protein-coupled receptor 20 2 4
MIRT488026 ADO 2-aminoethanethiol dioxygenase 2 2
MIRT488476 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 2 2
MIRT488761 FXYD1 FXYD domain containing ion transport regulator 1 2 2
MIRT489161 MRPL12 mitochondrial ribosomal protein L12 2 4
MIRT489529 MRE11A MRE11 homolog, double strand break repair nuclease 2 8
MIRT489774 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT489878 MPLKIP M-phase specific PLK1 interacting protein 2 2
MIRT490094 FN3K fructosamine 3 kinase 2 2
MIRT490202 PKNOX2 PBX/knotted 1 homeobox 2 2 2
MIRT490283 ISL2 ISL LIM homeobox 2 2 2
MIRT490377 LHFPL3 LHFPL tetraspan subfamily member 3 2 2
MIRT491035 ALPK3 alpha kinase 3 2 2
MIRT491186 JUND JunD proto-oncogene, AP-1 transcription factor subunit 2 4
MIRT491766 ZNF385A zinc finger protein 385A 2 2
MIRT491888 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 2 2
MIRT491981 UNK unkempt family zinc finger 2 2
MIRT492400 SDK1 sidekick cell adhesion molecule 1 2 2
MIRT493647 HDLBP high density lipoprotein binding protein 2 2
MIRT494010 DUSP9 dual specificity phosphatase 9 2 2
MIRT494167 CNOT6L CCR4-NOT transcription complex subunit 6 like 2 2
MIRT495712 PADI1 peptidyl arginine deiminase 1 2 2
MIRT496873 AHCYL2 adenosylhomocysteinase like 2 2 2
MIRT499175 RBPJL recombination signal binding protein for immunoglobulin kappa J region like 2 2
MIRT501652 PHLDA3 pleckstrin homology like domain family A member 3 2 2
MIRT506645 MAPK1 mitogen-activated protein kinase 1 2 4
MIRT510590 TUBB2A tubulin beta 2A class IIa 2 6
MIRT511907 FKBP1A FK506 binding protein 1A 2 2
MIRT513063 ANKRD45 ankyrin repeat domain 45 2 2
MIRT513104 DYNAP dynactin associated protein 2 2
MIRT521804 POM121C POM121 transmembrane nucleoporin C 2 2
MIRT523520 GLUL glutamate-ammonia ligase 2 2
MIRT525085 FRK fyn related Src family tyrosine kinase 2 2
MIRT530930 SCIN scinderin 2 2
MIRT533501 TRIM71 tripartite motif containing 71 2 2
MIRT538560 CECR2 CECR2, histone acetyl-lysine reader 2 2
MIRT544556 CSNK2A1 casein kinase 2 alpha 1 2 2
MIRT555912 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 2 2
MIRT560405 TMEM69 transmembrane protein 69 2 2
MIRT560664 RTN3 reticulon 3 2 2
MIRT564061 CDT1 chromatin licensing and DNA replication factor 1 2 2
MIRT565504 SP1 Sp1 transcription factor 2 2
MIRT570014 COL1A2 collagen type I alpha 2 chain 2 2
MIRT572321 HSPB6 heat shock protein family B (small) member 6 2 2
MIRT573229 TRIM21 tripartite motif containing 21 2 2
MIRT573487 IQSEC3 IQ motif and Sec7 domain 3 2 2
MIRT574137 MARVELD1 MARVEL domain containing 1 2 2
MIRT574323 ZNF703 zinc finger protein 703 2 2
MIRT620939 OSMR oncostatin M receptor 2 2
MIRT650080 MTL5 testis expressed metallothionein like protein 2 2
MIRT684553 ZNF708 zinc finger protein 708 2 2
MIRT685841 ANGEL1 angel homolog 1 2 2
MIRT688551 DCAF16 DDB1 and CUL4 associated factor 16 2 2
MIRT701985 MIER3 MIER family member 3 2 2
MIRT703899 EPT1 selenoprotein I 2 2
MIRT706388 MC2R melanocortin 2 receptor 2 2
MIRT707487 UGT2B4 UDP glucuronosyltransferase family 2 member B4 2 2
MIRT711885 INSIG2 insulin induced gene 2 2 2
MIRT719164 KIF6 kinesin family member 6 2 2
MIRT721294 C3orf36 chromosome 3 open reading frame 36 2 2
MIRT721775 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 2 2
MIRT723763 NKIRAS2 NFKB inhibitor interacting Ras like 2 2 2
MIRT725485 GPR26 G protein-coupled receptor 26 2 2
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-4 Dexamethasone approved 5743 Microarray primary rat thymocytes 20847043 2010 up-regulated
miR-4271 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive High Gastric Cancer cell line (BGC823)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive High Lung Adenocarcinoma tissue
hsa-miR-4271 Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-4271 Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PATU8988)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant Low Tongue Squamous Cell Carcinoma cell line (CAL-27, SCC-9)
hsa-miR-4271 Paclitaxel 36314 NSC125973 approved resistant High Non-Small Cell Lung Cancer cell line (H460)
hsa-miR-4271 Anlotinib 25017411 NSC832523 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Gefitinib 123631 NSC715055 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Icotinib 22024915 NSC800770 sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-miR-4271 Erlotinib 176870 NSC718781 approved sensitive Low Non-Small Cell Lung Cancer cell line (A549, PDC, H460)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (W1)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-mir-4271 Androstenedione+Anastrozole resistant cell line (MCF-7)
hsa-mir-4271 Androstenedione+Letrozole resistant cell line (MCF-7)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (BGC-823)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (cytosolic RNA)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved resistant cell line (CAL-27) (total RNA)
hsa-miR-4271 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-4271 Platinum-based doublet chemotherapy sensitive tissue (lung adenocarcinoma)
hsa-miR-4271 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-4271 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM16)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (1500 ng/ml)
hsa-miR-4271 Gemcitabine 60750 NSC613327 approved resistant cell line (PANC-1) (100 ng/ml)
hsa-miR-4271 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide resistant cell line (Bads-200)

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