miRTarBase - #MIRT446175


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pre-miRNA Information
pre-miRNA hsa-mir-1299   
Genomic Coordinates chr9: 40929010 - 40929092
Synonyms MIRN1299, hsa-mir-1299, MIR1299
Description Homo sapiens miR-1299 stem-loop
Comment None
RNA Secondary Structure
Associated Diseases

Mature miRNA Information
Mature miRNA hsa-miR-1299
Sequence 62| UUCUGGAAUUCUGUGUGAGGGA |83
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1042551075 4 dbSNP
rs747216379 19 dbSNP
rs1009712608 20 dbSNP
rs796108267 21 dbSNP
rs796728500 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ZNF37A   
Synonyms KOX21, ZNF37
Description zinc finger protein 37A
Transcript NM_001007094   
Other Transcripts NM_001178101 , NM_003421   
Expression
Putative miRNA Targets on ZNF37A
3'UTR of ZNF37A
(miRNA target sites are highlighted)		 
>ZNF37A|NM_001007094|3'UTR
   1 AGTCAGAACTTTGTAGAACACAGAACATAAAGGGTGAGAGAAATCTGTTAATATAATGATAATGAGAACACCTTTGCCCT
  81 GAAGTCAGTTCTCACAGTATAGAAGAGAACTTAAAGAGGGAAAAAACAATATGAAGATAGGGAATGCAGGAAAACATTAT
 161 TCTGGAATTTGGACCATACACTATGTTACAAAACTAAAAGTGGAAAAAACTTATTGGTGAATGAATATAGGAAACATTTT
 241 GCCCAATGCCACTCTTCATTAAACATCAGAGAATTCACACGGGGTGAAACCTGGGTCAGCATCCCTAGGTTGAGAAGGGA
 321 TGCATTTTTCTGCTACTACTACAGTTTCACAGAATACCTGAGAAGACACACTTGGAGAAACCTTTTGGGTGTAATGAATG
 401 TGGGAAAACCTTTCATCAGAAGTCAGCTCTAATTGTTCACCACAGAACTCATATAAGACAGAAACCCTATGGGTGTAATG
 481 AATGTGGAAAATCATTCTGTGTGAAGTCAAGAGGCCAGAGAAAATGCACAAACTGTAGGAAACTATAGGAAAGCATTTAC
 561 TATGAGGTTATATTTTATGGAGTATATGTAATAAGAAGTAGCTTCTCAGTGAACATCAGATAGTAGAGAAAGTATTTTTA
 641 ACTGTATCCAATGTGTGGATGTTTTAAGTTAAAATCTAAATTTAATATAGAACAGAGGTGTTGAGTTGCAGGATATCTAG
 721 CAATTTAAGAAAATGTGGAAAAAATATTTTTATTGAGAAATAGCATTTTACTTTGTTAATATCTAGTTTAGTTCATTGTC
 801 AAGACTGCTATTTTCTAAGAGACTTCTAAAGACGCCACTCAAGCCAATGGCTATAAGTAGTTCAAAGGTTTATTGCTTAG
 881 CCATATGAAAAATAAGGGAAGATTTTTTAGCAAGGGGACCCACAAACAAGAGTGCTCTTGTATGTCCAGAAGAAAGAGAA
 961 AGACCATCAATCAGGGGCCATAGTACAGGAGCCCACCAGCAGGATTTTTGAATAATCCTAGGGCAGACTAAATTCAGACG
1041 ACCCATCTCAGAATGGTGGATCAAAGCAGCAAGTCAATTTGCCTTGTATGCAACTTATGAGGATTAGTAGAAGAGAGTGG
1121 GTCCAGATTTCTGGTGGTTTCTGCCCTGCAGATGTCTAACACATAAGCCAGGACATTCTGCTGTGAGTGACTTATTGTAC
1201 CCAACTCTATTTCTCTCCATACTGAAACATGTCTTTCATAGGTGATACAACTTTTTAAAATGTATGTGTAGATATAACTT
1281 AAATATGGAGCTTTCAAAAAGCACAAATAGGCTGGACATGGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCTGAG
1361 GTGGGCAAATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAAATACAAA
1441 AATTAGCCGGGCATGGTGGTGCACATCGGTAGTCCTGGCTACTAGAGAGGTTGAGGTGGGAGGATCACTTGAACCTGGGA
1521 GGTGGGGGTTTCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGAGTGACAGAGAGAGATTCAAAAAACAAAAAAAA
1601 AGCAAAAATATACTTTGCTATTGGGTAAGGTATAGTAGTTGGCAGCAGAATGGACCCATTGAGGATAACTATAAAATTAC
1681 AGAAAATATTTAAATGCAACTTATTGCTATAGAAGCAAAGAGGACTAAAGGGCAAAATTCTAGAGAGTGGTAAATCTCAG
1761 AAAGCACAAGCATAAAATGCAGCTCTGGGGGCCCTTTCCACTTCTGGCTATAGGGAAGAACCTGAATACTGAACTTGATT
1841 CAGGCAGAGGACCATAACCTGGGGGTCAGGGGAAGGCATGGGGGGGACCAGAAACCAGAAGAACAATCAAGACTGCAATG
1921 AAAAAAATGGATACATTAGGAGCTTCAAACACATATAATTTCTCAAGAAATTTCCAGATGTCTCATGCTGCATAGGGCAG
2001 GAGCCTGAAAAGCTAATTTGAGAAGATAATAAGTAGGATTTTTGTTTTGTTTTGCATTTTGCAGTACAAAGGAGAAATGA
2081 TTAGAACTTAGGAAGTGCCAGTGGGTTGGTGAACATGCCATCAGTAAAAGCCCTGGAAACAAGGTCATACTAGAGATTGG
2161 TTGTGCCTTGTCACAACTGCAAACAATACCTGAGTGGAGTATTCAAAAACTTGCTTAGAAAGAAAACTCTAGGAACAGAT
2241 GGCTTCACTGAAGTTATTCCAAATATTTAAGAAATAATACCAGGCTTTTATAAACTTTTCTAGAAGAAAAAAGATGGAAC
2321 TTTTCCAATTCAGTTTTTGAGGCCAGTACAACCTTGATAACAAAACCTAAAAAAAAAACAACAAAAAAACCCATAAAGCT
2401 ATAGACCAAAGTCTCATAGATTTAGATGCAAAATCCTAAAATTGAAAAAAACATCTAGCCATATCCATAAACTATATCAT
2481 CACCAAGAGATGTTTATTAGGGCAATCAAAAGATTTATTATTTTAAAAAAATCAGTGTGGACTTCCATTCCTCTTTCTTT
2561 TGATTCCCCCCTTTGACTTTTCATGTATCTCTCCTGCCTTCCTTCCCCAGAGTGGAGGAGTTAGACTTGCCTCGTGGGAT
2641 GAGAGGAGTTGTGGCTTTGTGTCTGCTGGCACCAAGAGGGCTGAGGGTGAGGTGTGGAAGGGACAGGGGGAGGAGATGGG
2721 CAGCATTGTTGAGAGATTGGTAACACTGAGCAAATAAATATGTTGAGAATGATGACAGCAAGATTTCTCCATTAGAGAAG
2801 GTATTTATAAAAATAGGAATGAGGAGAGCTAGAAAACCTGGAGTGTGGCATTAGAATAGAACTCATATCTTTTAAATATA
2881 TAGGAACAAATAAATAAATTGTTGTGTGTGCACATATGCATATATTTTGTGTTCATTCTACTGAGAGGACCTAAACACAA
2961 TGACACCTCAGTAACAGTAAGCACACCAACTGCCAAGTTATTAGTTCCTAAATACTATCCACAAAAAAGGGGAACAGGGA
3041 TGATTCCTAGTCAGAGATTGGGAGAAATACAAGATGAGCCTGAATCATCTCATGTACCTGACAGTAAGAAAATACTCTGG
3121 CTGGTCTCAGTGGCTCATGTCTGTAATTCTAGCATGTTAGAAGGTCAAGGTGGGTGGGTTGCTTGAGCTCAGGAGTTTGA
3201 GACCAGCCTGGGCAACATGGCACAATTGTCTCTACAAAAAATACAAAAATTAGCCAGGCATGGTGGCATGCACCTGTAGT
3281 CCGAGGTACTCAGGAGGCAGAGACGTGGGAGGATCGCTTGAGCCTGGGAGATTGAGGCTGCACTGAGCTGTGATCGTGCC
3361 ACTGTACTCTAGCCTGGAAGACAGAGTGAGACCCCATCTCAGGAAAAAAGAAAAAAAAAAAGATGTCATTCAGCAGGTTA
3441 ATGGATAAACTGTGGAACATCCAGAAAACTTTAACATTCTTCAAAGAAATAGAAAACACAATCCTAAAATTTATATGGGA
3521 ACCACAAAAGACTTAGAATAGTCAGCTATCCTGAGCAAAAGGAATCAAACTGGAGGAATCATATTACCTGACTTCCAATT
3601 ATTCAACAGAGCTACAGTAACCAAAACAGCATGATACTGGCATAACAACAGACACATAGGAACAGTATAGACAACCCAGA
3681 AACAAATTCATACATCTATGGTGACCACTTTTGACAAAGGAATGAAGAACATACACTGGGGAAAAGATAATGTCTTTAAT
3761 AAATGGTGCTGGGAAAACTGGATATCCATATGCAGAAGAATGAAACTAGACCCCCATCTCTTAGCATATACAAAAATCAA
3841 AATTAATTAAAAAGTTAAATCTAAGACCTCAAACTATGAAACAGCTAAAAGAAAACATCGGGGAATCTCTCCAGGACATT
3921 GGAGTGGGCAAAGATTTCTTGTGTAATACCTGACAAACAGGCAACCAAAGCAAAAGTGGACAAATGGGATCACATCAAGT
4001 TAAAAATCTTCTGCATTGCAAAGGAAATAACAAAGTGAAGAGACAACCCATAGAATGTGAGATAATATTTGCAAACTATC
4081 CATCTGTATTAGGCCATTTTTGAAGTACTACAAAGAAATACTTGAGACTGAGTAATTTATAAAGAAGAGGTTTAATTGGC
4161 TCACGGTTTTGCAGGCTGTACAGGAAGCATGGTGCTAACATCTGATCAGCTTGTAGGGAGGCATCAGGAAGTTTCCAACC
4241 ATGGTGGAAGGCAAAAGGGGAATAAGTATCTCACATGGCAGGTGCAGGGCAAAGAGAGGGGGGAAGGGAAGTGCCACACA
4321 ACCAGATCTTGTGAGTACTCAGATTTTGTGAGGGGTGCTTGAGGTCATGGATACCCATTTACCCTGATGTGTTTATACAC
4401 ATTTCATACCTGTATTAAAATATCTCATGTACCCCATAAACATATACACCTACTTTGTACCCACAAAAATTTAAAAATAA
4481 AGTTAATTTCAATGTTTAAAGACTTGTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' agGGAGUGUGUCUU--AAGGUCUu 5'
            ::|| || ||||  ||||||| 
Target 5' aaTTTCTCA-AGAAATTTCCAGAt 3'
 1957 - 1979 161.00 -14.90
2 
miRNA  3' agGGAGUGU-GU-CUUAAGGUCUu 5'
            ||| | : || ||:||||||| 
Target 5' caCCTGAGGTCAGGAGTTCCAGAc 3'
 1371 - 1394 160.00 -17.80
3 
miRNA  3' agggagugUGUCUUAAGGUCUu 5'
                  :|| |||||:||| 
Target 5' actaaaggGCAAAATTCTAGAg 3'
 1724 - 1745 142.00 -12.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26503734 2 COSMIC
COSN31496815 3 COSMIC
COSN19733663 12 COSMIC
COSN30508470 20 COSMIC
COSN30175154 37 COSMIC
COSN27006053 41 COSMIC
COSN31479774 67 COSMIC
COSN30184160 73 COSMIC
COSN30154204 94 COSMIC
COSN31565904 108 COSMIC
COSN20107038 127 COSMIC
COSN6405113 128 COSMIC
COSN28718482 143 COSMIC
COSN16356978 236 COSMIC
COSN30121110 272 COSMIC
COSN30162313 376 COSMIC
COSN27006052 446 COSMIC
COSN27006054 448 COSMIC
COSN30126935 465 COSMIC
COSN17496029 481 COSMIC
COSN31574439 521 COSMIC
COSN26856254 540 COSMIC
COSN31960471 595 COSMIC
COSN31778836 745 COSMIC
COSN32065376 753 COSMIC
COSN25977917 780 COSMIC
COSN24093432 845 COSMIC
COSN16977758 937 COSMIC
COSN29321151 1025 COSMIC
COSN4714206 1042 COSMIC
COSN20261324 1111 COSMIC
COSN4895603 1412 COSMIC
COSN9028574 1523 COSMIC
COSN10067126 1733 COSMIC
COSN9207466 1902 COSMIC
COSN14908864 1943 COSMIC
COSN28198214 1993 COSMIC
COSN9207467 2106 COSMIC
COSN32062093 2379 COSMIC
COSN24888096 2383 COSMIC
COSN22371262 2551 COSMIC
COSN10067127 2625 COSMIC
COSN1488761 2707 COSMIC
COSN21434054 2708 COSMIC
COSN26469547 2725 COSMIC
COSN29576251 2758 COSMIC
COSN9207468 2791 COSMIC
COSN20092080 2817 COSMIC
COSN6969481 2914 COSMIC
COSN22248060 3142 COSMIC
COSN16181082 3244 COSMIC
COSN17182621 3326 COSMIC
COSN20268007 3366 COSMIC
COSN22609389 3422 COSMIC
COSN16050617 3428 COSMIC
COSN29880949 3822 COSMIC
COSN9207469 4008 COSMIC
COSN24866439 4136 COSMIC
COSN20737265 4424 COSMIC
COSN28245282 4685 COSMIC
COSN16590119 4951 COSMIC
COSN10067128 5064 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1328534201 7 dbSNP
rs759569499 8 dbSNP
rs767187232 9 dbSNP
rs1397745937 11 dbSNP
rs752555892 13 dbSNP
rs1391699688 19 dbSNP
rs756315444 20 dbSNP
rs577458074 21 dbSNP
rs1453268262 22 dbSNP
rs765559194 22 dbSNP
rs1422658944 23 dbSNP
rs754090051 29 dbSNP
rs963116496 35 dbSNP
rs1386571940 43 dbSNP
rs1375271100 44 dbSNP
rs775789442 49 dbSNP
rs1196207963 52 dbSNP
rs546140605 53 dbSNP
rs763504380 53 dbSNP
rs1233770857 57 dbSNP
rs375463315 58 dbSNP
rs1166282270 59 dbSNP
rs1398716484 63 dbSNP
rs1305672861 64 dbSNP
rs1447843190 66 dbSNP
rs1335740381 70 dbSNP
rs958639686 89 dbSNP
rs1393573124 90 dbSNP
rs1373951467 99 dbSNP
rs1171373581 101 dbSNP
rs1433658538 108 dbSNP
rs1325444569 110 dbSNP
rs1368992231 113 dbSNP
rs1395188227 115 dbSNP
rs992682726 117 dbSNP
rs1302339739 118 dbSNP
rs368809527 121 dbSNP
rs386371224 121 dbSNP
rs386371225 121 dbSNP
rs75525219 121 dbSNP
rs3041910 127 dbSNP
rs199740277 128 dbSNP
rs866734235 129 dbSNP
rs1307443923 130 dbSNP
rs1225860110 133 dbSNP
rs1249182501 172 dbSNP
rs1255078117 173 dbSNP
rs1340823438 177 dbSNP
rs553633095 182 dbSNP
rs1486145548 186 dbSNP
rs1198939665 188 dbSNP
rs118147298 215 dbSNP
rs945701185 216 dbSNP
rs141744986 220 dbSNP
rs1312613899 232 dbSNP
rs977578943 233 dbSNP
rs561435961 234 dbSNP
rs1375734371 244 dbSNP
rs1335767076 245 dbSNP
rs1398518870 247 dbSNP
rs1406523309 249 dbSNP
rs1159097132 257 dbSNP
rs1470778844 264 dbSNP
rs757710198 267 dbSNP
rs925757656 280 dbSNP
rs749825596 281 dbSNP
rs1039918060 282 dbSNP
rs530549658 299 dbSNP
rs899976001 301 dbSNP
rs1213821873 306 dbSNP
rs934243382 313 dbSNP
rs1284992382 314 dbSNP
rs1211162483 336 dbSNP
rs1333392122 340 dbSNP
rs1293191873 348 dbSNP
rs79441071 354 dbSNP
rs1357756160 358 dbSNP
rs1285599872 360 dbSNP
rs1428156395 371 dbSNP
rs887109717 372 dbSNP
rs563883453 375 dbSNP
rs1458336389 381 dbSNP
rs1004257240 392 dbSNP
rs1294549279 396 dbSNP
rs1361694077 400 dbSNP
rs1475413497 401 dbSNP
rs1415615944 418 dbSNP
rs1185025604 420 dbSNP
rs1475187369 430 dbSNP
rs1381063162 436 dbSNP
rs1298347595 439 dbSNP
rs1467185386 442 dbSNP
rs773815732 450 dbSNP
rs1214792067 451 dbSNP
rs1273186031 451 dbSNP
rs1017341570 460 dbSNP
rs543616597 465 dbSNP
rs1002226781 467 dbSNP
rs1034165671 470 dbSNP
rs1297859032 471 dbSNP
rs1436726453 474 dbSNP
rs532942524 476 dbSNP
rs546546818 490 dbSNP
rs1461855126 493 dbSNP
rs566772082 496 dbSNP
rs992714922 498 dbSNP
rs1409135061 514 dbSNP
rs1223302843 524 dbSNP
rs1024188451 536 dbSNP
rs185621414 539 dbSNP
rs977140758 540 dbSNP
rs1203105468 545 dbSNP
rs925589915 546 dbSNP
rs935753107 554 dbSNP
rs975129740 555 dbSNP
rs1308440203 563 dbSNP
rs921438714 564 dbSNP
rs1230079936 570 dbSNP
rs1187332994 572 dbSNP
rs1415758700 573 dbSNP
rs934107756 580 dbSNP
rs1386818657 583 dbSNP
rs1369704541 585 dbSNP
rs1296373575 588 dbSNP
rs780138843 589 dbSNP
rs1441299879 599 dbSNP
rs1051698277 609 dbSNP
rs1170731445 614 dbSNP
rs887400953 621 dbSNP
rs1394671425 632 dbSNP
rs779154635 633 dbSNP
rs1174392907 638 dbSNP
rs749477615 644 dbSNP
rs563532250 646 dbSNP
rs549227715 647 dbSNP
rs1254353732 652 dbSNP
rs1002259346 656 dbSNP
rs1033692770 679 dbSNP
rs894317103 688 dbSNP
rs1233418188 691 dbSNP
rs1014084345 693 dbSNP
rs1313439021 696 dbSNP
rs568562658 699 dbSNP
rs1223087641 702 dbSNP
rs1350908046 703 dbSNP
rs1352981301 705 dbSNP
rs1229721262 706 dbSNP
rs1313013076 711 dbSNP
rs1315916553 714 dbSNP
rs967341635 716 dbSNP
rs537582504 720 dbSNP
rs977716281 728 dbSNP
rs1343446702 731 dbSNP
rs1032691037 739 dbSNP
rs1159041632 739 dbSNP
rs956992100 744 dbSNP
rs1186317860 748 dbSNP
rs150552823 756 dbSNP
rs748529666 762 dbSNP
rs1200611755 769 dbSNP
rs1210069864 781 dbSNP
rs921054513 782 dbSNP
rs1215022949 789 dbSNP
rs1329828907 800 dbSNP
rs7897675 802 dbSNP
rs1231295722 805 dbSNP
rs1354510478 805 dbSNP
rs1313715902 807 dbSNP
rs188571288 810 dbSNP
rs987016404 811 dbSNP
rs908686381 818 dbSNP
rs940304322 821 dbSNP
rs1407531927 832 dbSNP
rs1038999561 834 dbSNP
rs181093608 835 dbSNP
rs1163402689 839 dbSNP
rs937976550 843 dbSNP
rs1381306379 845 dbSNP
rs1369357564 846 dbSNP
rs1187842110 847 dbSNP
rs1425146713 854 dbSNP
rs139533547 860 dbSNP
rs1311569496 861 dbSNP
rs1185488801 873 dbSNP
rs573237434 900 dbSNP
rs535634272 911 dbSNP
rs1464951784 924 dbSNP
rs1055048923 928 dbSNP
rs1211675635 935 dbSNP
rs143246105 937 dbSNP
rs1265765899 943 dbSNP
rs1449622679 944 dbSNP
rs1302852284 948 dbSNP
rs7901183 969 dbSNP
rs1014067231 978 dbSNP
rs1045585668 980 dbSNP
rs1324486417 986 dbSNP
rs1440754313 992 dbSNP
rs746774782 998 dbSNP
rs565316073 1000 dbSNP
rs902984704 1002 dbSNP
rs1460774662 1003 dbSNP
rs1371051409 1024 dbSNP
rs1167496112 1028 dbSNP
rs1221703918 1037 dbSNP
rs79524569 1040 dbSNP
rs1354116386 1041 dbSNP
rs1191700968 1044 dbSNP
rs1451002468 1046 dbSNP
rs547548281 1048 dbSNP
rs1278135932 1052 dbSNP
rs957271069 1066 dbSNP
rs1337200938 1075 dbSNP
rs1210925397 1078 dbSNP
rs996548517 1088 dbSNP
rs1027979400 1092 dbSNP
rs955132111 1094 dbSNP
rs1233620325 1095 dbSNP
rs1332236633 1099 dbSNP
rs776649949 1101 dbSNP
rs1396152738 1103 dbSNP
rs1307048403 1110 dbSNP
rs1232355691 1111 dbSNP
rs1429945378 1115 dbSNP
rs1479817147 1121 dbSNP
rs986932926 1127 dbSNP
rs146196282 1130 dbSNP
rs1171250384 1132 dbSNP
rs1180705645 1137 dbSNP
rs1477403022 1138 dbSNP
rs1378204708 1139 dbSNP
rs1200833361 1149 dbSNP
rs1435883257 1166 dbSNP
rs1250738026 1172 dbSNP
rs1239222073 1176 dbSNP
rs1484182855 1180 dbSNP
rs1454124151 1196 dbSNP
rs759546604 1198 dbSNP
rs1345726225 1201 dbSNP
rs771160509 1210 dbSNP
rs1397433684 1212 dbSNP
rs776817012 1218 dbSNP
rs1176230610 1229 dbSNP
rs1335576315 1230 dbSNP
rs1412034926 1234 dbSNP
rs576063888 1239 dbSNP
rs1310697893 1249 dbSNP
rs1413417181 1263 dbSNP
rs560460233 1265 dbSNP
rs961810714 1266 dbSNP
rs1468501939 1269 dbSNP
rs1439623676 1283 dbSNP
rs1332932080 1284 dbSNP
rs1255673455 1292 dbSNP
rs1377124971 1296 dbSNP
rs1439939151 1297 dbSNP
rs1209607743 1305 dbSNP
rs1300903025 1312 dbSNP
rs1280774616 1328 dbSNP
rs974356298 1331 dbSNP
rs1329127686 1344 dbSNP
rs1269303897 1347 dbSNP
rs1219732790 1355 dbSNP
rs12265211 1361 dbSNP
rs920219058 1372 dbSNP
rs938260015 1376 dbSNP
rs12265219 1384 dbSNP
rs529249805 1404 dbSNP
rs1305815884 1406 dbSNP
rs139084561 1411 dbSNP
rs1258980999 1412 dbSNP
rs1468150941 1419 dbSNP
rs1159726617 1426 dbSNP
rs917891669 1429 dbSNP
rs949508135 1430 dbSNP
rs186033772 1431 dbSNP
rs1473269753 1433 dbSNP
rs1239404762 1437 dbSNP
rs1191191890 1438 dbSNP
rs903018016 1439 dbSNP
rs1269330784 1447 dbSNP
rs999132800 1449 dbSNP
rs531538295 1450 dbSNP
rs1186412854 1452 dbSNP
rs1229217454 1454 dbSNP
rs1054281881 1457 dbSNP
rs1285577868 1462 dbSNP
rs1428043241 1464 dbSNP
rs1363751790 1466 dbSNP
rs370368478 1468 dbSNP
rs1392157337 1469 dbSNP
rs1163867302 1473 dbSNP
rs1405723003 1485 dbSNP
rs1416308883 1493 dbSNP
rs1463629218 1494 dbSNP
rs1172147129 1496 dbSNP
rs1400583883 1504 dbSNP
rs996748280 1515 dbSNP
rs1225618842 1518 dbSNP
rs1323721786 1520 dbSNP
rs1191091801 1523 dbSNP
rs1467557232 1526 dbSNP
rs1246615292 1528 dbSNP
rs1332570682 1529 dbSNP
rs1453682043 1534 dbSNP
rs1291594725 1535 dbSNP
rs1028012007 1541 dbSNP
rs1269542598 1545 dbSNP
rs1297743247 1547 dbSNP
rs955186804 1551 dbSNP
rs1359728684 1557 dbSNP
rs1007986665 1574 dbSNP
rs1436933563 1574 dbSNP
rs1351348698 1584 dbSNP
rs1220547731 1585 dbSNP
rs1278857433 1586 dbSNP
rs1429309088 1591 dbSNP
rs11321804 1593 dbSNP
rs1170618834 1593 dbSNP
rs1390987468 1593 dbSNP
rs398013259 1593 dbSNP
rs398075098 1593 dbSNP
rs201977885 1594 dbSNP
rs1334514295 1603 dbSNP
rs1212053546 1617 dbSNP
rs1192222319 1621 dbSNP
rs1015721810 1624 dbSNP
rs1204846890 1631 dbSNP
rs1292519555 1633 dbSNP
rs961153257 1637 dbSNP
rs974683407 1643 dbSNP
rs775122941 1651 dbSNP
rs1300524287 1654 dbSNP
rs1219688793 1655 dbSNP
rs1369507413 1660 dbSNP
rs1027089739 1664 dbSNP
rs959631753 1672 dbSNP
rs1371465334 1676 dbSNP
rs1310082621 1680 dbSNP
rs1464615240 1683 dbSNP
rs115750987 1697 dbSNP
rs772224456 1701 dbSNP
rs1435465615 1710 dbSNP
rs190894401 1712 dbSNP
rs1181979484 1717 dbSNP
rs547003413 1741 dbSNP
rs1423713573 1747 dbSNP
rs1474697128 1748 dbSNP
rs1473118593 1771 dbSNP
rs41277344 1774 dbSNP
rs1183819210 1781 dbSNP
rs1482004154 1784 dbSNP
rs763653025 1785 dbSNP
rs1210175355 1806 dbSNP
rs1392371520 1809 dbSNP
rs924054601 1811 dbSNP
rs143961736 1819 dbSNP
rs199990250 1823 dbSNP
rs1343376211 1825 dbSNP
rs1290466009 1828 dbSNP
rs1394469759 1835 dbSNP
rs555641441 1845 dbSNP
rs1378680252 1851 dbSNP
rs1303548119 1855 dbSNP
rs1467632495 1861 dbSNP
rs1401754466 1866 dbSNP
rs1158985412 1868 dbSNP
rs868496683 1871 dbSNP
rs1183941523 1880 dbSNP
rs892952454 1880 dbSNP
rs932569938 1880 dbSNP
rs1255026484 1881 dbSNP
rs556719564 1883 dbSNP
rs1246121777 1884 dbSNP
rs1207971202 1886 dbSNP
rs1231740991 1887 dbSNP
rs1242310311 1889 dbSNP
rs1286201479 1893 dbSNP
rs71491238 1897 dbSNP
rs2505182 1899 dbSNP
rs1397859979 1907 dbSNP
rs113865393 1910 dbSNP
rs1223586303 1912 dbSNP
rs757508753 1919 dbSNP
rs1008350246 1921 dbSNP
rs1015253575 1923 dbSNP
rs1391434311 1930 dbSNP
rs550353708 1936 dbSNP
rs1235095731 1937 dbSNP
rs1367599087 1944 dbSNP
rs767873339 1944 dbSNP
rs1263328962 1952 dbSNP
rs1164958513 1953 dbSNP
rs1485069386 1953 dbSNP
rs1445943379 1956 dbSNP
rs1387740152 1979 dbSNP
rs995191512 1980 dbSNP
rs1465326990 1985 dbSNP
rs1249800961 1988 dbSNP
rs5784565 1988 dbSNP
rs1027120969 1994 dbSNP
rs774073297 1997 dbSNP
rs1487995054 2000 dbSNP
rs1266273349 2009 dbSNP
rs1247198353 2014 dbSNP
rs1184728367 2016 dbSNP
rs1297016541 2017 dbSNP
rs1229208792 2021 dbSNP
rs1368048390 2027 dbSNP
rs959496436 2029 dbSNP
rs1386570261 2039 dbSNP
rs1369842323 2040 dbSNP
rs557549608 2048 dbSNP
rs761635501 2050 dbSNP
rs1368291024 2067 dbSNP
rs1472888458 2081 dbSNP
rs570010087 2098 dbSNP
rs577694355 2107 dbSNP
rs1378247636 2113 dbSNP
rs750890454 2114 dbSNP
rs12252418 2116 dbSNP
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rs755151651 2329 dbSNP
rs1331689002 2342 dbSNP
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rs770780109 2358 dbSNP
rs1160225597 2369 dbSNP
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rs1447299568 5582 dbSNP
rs565288686 5584 dbSNP
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rs1376120648 5610 dbSNP
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rs140017759 5659 dbSNP
rs964540953 5668 dbSNP
rs1442042421 5674 dbSNP
rs974971960 5686 dbSNP
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rs759864076 5699 dbSNP
rs1209423874 5708 dbSNP
rs1350825359 5711 dbSNP
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rs1312649511 5731 dbSNP
rs1462782634 5736 dbSNP
rs1204763602 5737 dbSNP
rs1037379232 5740 dbSNP
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rs1360011254 5746 dbSNP
rs1438455198 5750 dbSNP
rs1181071246 5755 dbSNP
rs780750618 5757 dbSNP
rs905600988 5765 dbSNP
rs566389103 5783 dbSNP
rs1163100375 5786 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' agggAGUGUGUCUUAAGGUCUu 5'
              ||| | | | ||||||| 
Target 5' ----UCA-AGAAAUUUCCAGA- 3'
 		1 - 16
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
Experimental Support 2 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
     
Conditions HEK293S
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... HITS-CLIP data was present in GSM1084076. RNA binding protein: AGO2. Condition:CLIP_nohippuristanol_rep1_SigmaAb ...

- Karginov FV; Hannon GJ, 2013, Genes & development.

Article - Karginov FV; Hannon GJ
- Genes & development, 2013
When adapting to environmental stress, cells attenuate and reprogram their translational output. In part, these altered translation profiles are established through changes in the interactions between RNA-binding proteins and mRNAs. The Argonaute 2 (Ago2)/microRNA (miRNA) machinery has been shown to participate in stress-induced translational up-regulation of a particular mRNA, CAT-1; however, a detailed, transcriptome-wide understanding of the involvement of Ago2 in the process has been lacking. Here, we profiled the overall changes in Ago2-mRNA interactions upon arsenite stress by cross-linking immunoprecipitation (CLIP) followed by high-throughput sequencing (CLIP-seq). Ago2 displayed a significant remodeling of its transcript occupancy, with the majority of 3' untranslated region (UTR) and coding sequence (CDS) sites exhibiting stronger interaction. Interestingly, target sites that were destined for release from Ago2 upon stress were depleted in miRNA complementarity signatures, suggesting an alternative mode of interaction. To compare the changes in Ago2-binding patterns across transcripts with changes in their translational states, we measured mRNA profiles on ribosome/polysome gradients by RNA sequencing (RNA-seq). Increased Ago2 occupancy correlated with stronger repression of translation for those mRNAs, as evidenced by a shift toward lighter gradient fractions upon stress, while release of Ago2 was associated with the limited number of transcripts that remained translated. Taken together, these data point to a role for Ago2 and the mammalian miRNAs in mediating the translational component of the stress response.
LinkOut: [PMID: 23824327]
CLIP-seq Support 1 for dataset GSM4903833
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_a
Location of target site NM_001178101 | 3UTR | CCAGAAAACUUUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM4903834
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_b
Location of target site NM_001178101 | 3UTR | AUGAAAAAAAUGGAUACAUUAGGAGCUUCAAACACAUAUAAUUUCUCAAGAAAUUUCCAGAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 3 for dataset GSM4903835
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / CTL_TD_21_c
Location of target site NM_001007094 | 3UTR | CAGAAAACUUUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 4 for dataset GSM4903836
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_a
Location of target site NM_001178101 | 3UTR | AGAAAACUUUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 5 for dataset GSM4903837
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_b
Location of target site NM_001178101 | 3UTR | CAGAAAACUUUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 6 for dataset GSM4903838
Method / RBP HITS-CLIP / AGO
Cell line / Condition Dermal fibroblasts / 124_TD_21_c
Location of target site NM_001178101 | 3UTR | CAGAAAACUUUAACAU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Accession Series GSE161239
CLIP-seq Viewer Link
CLIP-seq Support 7 for dataset GSM1084076
Method / RBP HITS-CLIP / AGO2
Cell line / Condition HEK293S / CLIP_nohippuristanol_rep1_SigmaAb
Location of target site ENST00000361085.5 | 3UTR | GCAAAUCACCUGAGGUCAGGAGUU
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 23824327 / GSE44404
CLIP-seq Viewer Link
CLIP-seq Support 8 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000361085.5 | 3UTR | UCAAGAAAUUUCCAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 9 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000361085.5 | 3UTR | UCAAGAAAUUUCCAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer -0.32 6.4e-2 -0.205 1.7e-1 24 Click to see details
GSE32688 Pancreatic cancer 0.174 1.7e-1 0.120 2.6e-1 32 Click to see details
GSE42095 Differentiated embryonic stem cells 0.181 2.0e-1 0.238 1.4e-1 23 Click to see details
GSE28260 Renal cortex and medulla 0.25 2.1e-1 0.335 1.3e-1 13 Click to see details
GSE26953 Aortic valvular endothelial cells 0.173 2.1e-1 0.112 3.0e-1 24 Click to see details
GSE38974 Chronic obstructive pulmonary disease 0.161 2.2e-1 0.120 2.8e-1 25 Click to see details
GSE38226 Liver fibrosis -0.141 2.7e-1 -0.045 4.2e-1 21 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
75 hsa-miR-1299 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT079552 VAMP3 vesicle associated membrane protein 3 2 2
MIRT154885 GNAS GNAS complex locus 2 4
MIRT275056 SESN2 sestrin 2 2 4
MIRT303051 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 2 4
MIRT319158 CCDC71L coiled-coil domain containing 71 like 2 2
MIRT339620 TMPO thymopoietin 2 2
MIRT441961 BACE2 beta-site APP-cleaving enzyme 2 2 2
MIRT445113 DCAF4 DDB1 and CUL4 associated factor 4 2 2
MIRT445290 CD274 CD274 molecule 2 2
MIRT446037 HMCN1 hemicentin 1 2 2
MIRT446162 C8A complement C8 alpha chain 2 2
MIRT446175 ZNF37A zinc finger protein 37A 2 4
MIRT446414 OCA2 OCA2 melanosomal transmembrane protein 2 2
MIRT446884 TRIM25 tripartite motif containing 25 2 2
MIRT449789 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450026 EHD3 EH domain containing 3 2 2
MIRT450367 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 2 2
MIRT479739 CCND1 cyclin D1 2 2
MIRT484809 ZNFX1 zinc finger NFX1-type containing 1 2 2
MIRT485892 ZFP36 ZFP36 ring finger protein 2 2
MIRT486036 UBBP4 ubiquitin B pseudogene 4 2 2
MIRT488295 DHCR24 24-dehydrocholesterol reductase 2 2
MIRT497377 METTL8 methyltransferase like 8 2 2
MIRT508219 ZNF850 zinc finger protein 850 2 6
MIRT510923 PRRX1 paired related homeobox 1 2 4
MIRT512661 STEAP3 STEAP3 metalloreductase 2 2
MIRT520031 YOD1 YOD1 deubiquitinase 2 6
MIRT528490 AGTR2 angiotensin II receptor type 2 2 2
MIRT530083 PAGR1 PAXIP1 associated glutamate rich protein 1 2 4
MIRT531086 CCDC140 coiled-coil domain containing 140 2 2
MIRT535363 PEX5L peroxisomal biogenesis factor 5 like 2 2
MIRT535595 NUDT21 nudix hydrolase 21 2 2
MIRT538613 CCT5 chaperonin containing TCP1 subunit 5 2 4
MIRT539002 AVL9 AVL9 cell migration associated 2 2
MIRT545918 ZC3H4 zinc finger CCCH-type containing 4 2 2
MIRT548482 EEF2 eukaryotic translation elongation factor 2 2 2
MIRT555088 PURB purine rich element binding protein B 2 2
MIRT561421 TRIB3 tribbles pseudokinase 3 2 2
MIRT564965 WTAP WT1 associated protein 2 2
MIRT571686 RPRD2 regulation of nuclear pre-mRNA domain containing 2 2 2
MIRT574656 KLHL15 kelch like family member 15 2 2
MIRT610037 CNOT6 CCR4-NOT transcription complex subunit 6 2 6
MIRT612436 SMOC2 SPARC related modular calcium binding 2 2 2
MIRT614349 LOH12CR1 BLOC-1 related complex subunit 5 2 2
MIRT615304 CCDC158 coiled-coil domain containing 158 2 2
MIRT615771 FSD2 fibronectin type III and SPRY domain containing 2 2 2
MIRT615889 MT1A metallothionein 1A 2 2
MIRT619147 ZNF326 zinc finger protein 326 2 2
MIRT622042 SSBP2 single stranded DNA binding protein 2 2 2
MIRT637385 R3HDM2 R3H domain containing 2 2 2
MIRT640739 EPB41 erythrocyte membrane protein band 4.1 2 2
MIRT644418 PIGS phosphatidylinositol glycan anchor biosynthesis class S 2 2
MIRT647638 FAIM2 Fas apoptotic inhibitory molecule 2 2 2
MIRT654305 RBMS3 RNA binding motif single stranded interacting protein 3 2 2
MIRT654367 RBM23 RNA binding motif protein 23 2 2
MIRT655944 NDST1 N-deacetylase and N-sulfotransferase 1 2 2
MIRT655990 MYRF myelin regulatory factor 2 2
MIRT659692 CD226 CD226 molecule 2 2
MIRT665868 TIAF1 TGFB1-induced anti-apoptotic factor 1 2 2
MIRT667317 MYO18A myosin XVIIIA 2 2
MIRT684312 GTF3C4 general transcription factor IIIC subunit 4 2 2
MIRT694138 CYP27C1 cytochrome P450 family 27 subfamily C member 1 2 2
MIRT698529 TFRC transferrin receptor 2 2
MIRT698834 SSR2 signal sequence receptor subunit 2 2 2
MIRT700657 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 2 2
MIRT705377 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 2 2
MIRT707314 TMEM184B transmembrane protein 184B 2 2
MIRT709027 KBTBD13 kelch repeat and BTB domain containing 13 2 2
MIRT716032 TMPRSS4 transmembrane protease, serine 4 2 2
MIRT718228 LCE1A late cornified envelope 1A 2 2
MIRT718475 TMEM151A transmembrane protein 151A 2 2
MIRT722333 BEND6 BEN domain containing 6 2 2
MIRT734096 TUG1 taurine up-regulated 1 (non-protein coding) 3 0
MIRT734099 NOTCH3 notch 3 3 0
MIRT755871 LIF LIF, interleukin 6 family cytokine 4 1
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-1 Anthocyanin NULL 145858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Caffeic acid NULL 689043 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Catechin approved 9064 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Curcumin NULL 969516 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Ferulic acid NULL 445858 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Hesperidin NULL 10621 Microarray apoE−/− mice 22253797 2012 up-regulated
miR-1 Quercetin NULL 5280343 Microarray apoE−/− mice 22253797 2012 down-regulated
miR-1 Galactose NULL 6036 Quantitative real-time PCR lens 22736950 2012 up-regulated
miR-1 Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) NULL 8490 Microarray mouse brain 19270793 2009 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Quantitative real-time PCR myocardial differentiation of mouse ES cells 19521018 2009 down-regulated
miR-1 Sulfonyl-hydrazone-1 (SHZ) NULL NULL Quantitative real-time PCR Murine broblast-derived Induced pluripotent stem cells 21445862 2011 up-regulated
miR-1 Cocaine NULL 446220 Next-generation sequencing ventral striatum 21708909 2011 up-regulated
miR-1 Atorvastatin approved 60823 Quantitative real-time PCR Cardiomyocyte 23860036 2013 down-regualted
miR-1 Glucose NULL 5793 Quantitative real-time PCR endothelial cells 24394957 2014 down-regulated
miR-1 Docosahexaenoic acid NULL 445580 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 Palmitic acid approved 985 Quantitative real-time PCR Caco-2 cells 24623846 2014 up-regulated
miR-1 17beta-estradiol (E2) approved 5757 Microarray MCF-7AKT breast cancer cells 19528081 2009 down-regulated
miR-1 Essential amino acids (EAA) NULL NULL Quantitative real-time PCR skeletal muscle of young adults 19828686 2009 up-regulated
miR-1 Hydrogen peroxide (H2O2) NULL 784 Quantitative real-time PCR Human umbilical vein endothelial cells 21527937 2011 down-regulated
miR-1 Trichostatin A (TSA) NULL 444732 Microarray apoptosis-resistant breast cancer cells 21971930 2011 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR acute promyelocytic leukemia 22072212 2012 up-regulated
miR-1 5-Fluorouracil approved 3385 Microarray CNE cells 22614822 2012 up-regulated
miR-1 Bicalutamide approved 2375 Microarray prostate 22674191 2012 up-regulated
miR-1 Arsenic trioxide approved 14888 Quantitative real-time PCR cardia 22889704 2012 up-regulated
miR-1 Perfluorooctane sulfonate NULL 74483 Microarray zebrafish embryos 20878907 2011 up-regulated
miR-1 Quinidine approved 441074 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 up-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR myocardial infarction (MI) rats 19775284 2009 down-regulated
miR-1 Tanshinone IIA NULL 164676 Quantitative real-time PCR post-infarction rat cardiomyocytes 21220930 2011 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 down-regulated
miR-1 Dexamethasone approved 5743 Microarray adrenals and granulosa cells 24205079 2014 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 up-regulated
miR-1 Thiourea (TU) NULL 737139 Quantitative real-time PCR skeletal muscle and heart 22142802 2012 down-regulated
miR-1 Isoproterenol approved 3779 Quantitative real-time PCR heart 22847192 2012 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved resistant High Ovarian Cancer cell line (A2780)
hsa-miR-1299 Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HT-29)
hsa-miR-1299 Doxorubicin 31703 NSC123127 approved resistant High Hepatocellular Carcinoma tissue and cell line (HepG2)
hsa-miR-1299 Imatinib 5291 NSC743414 approved sensitive High Chronic Myelogenous Leukemia tissue
hsa-miR-1299 Imatinib 5291 NSC743414 approved resistant High Chronic Myelogenous Leukemia cell line (K562)
hsa-miR-1299 Bromocriptine 31101 NSC169774 approved resistant Low Prolactinoma tissue
hsa-miR-1299 Bromocriptine 31101 NSC169774 approved resistant High Prolactinoma tissue
hsa-miR-1299 Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-1299 Vemurafenib 42611257 NSC761431 approved sensitive cell line (LM43)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-1299 Tamoxifen 2733525 NSC180973 approved sensitive cell line (LCC2)
hsa-miR-1299 Osimertinib 71496458 NSC779217 approved resistant cell line (H1975)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)
hsa-miR-1299 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-1299 Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-1299 Pegylated interferon alpha+Ribavirin resistant tissue (chronic hepatitis C)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (IGROV-1)
hsa-miR-1299 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-1299 Paclitaxel/Docetaxel/Vinorelbine/Doxorubicin/Etoposide sensitive cell line (Bads-200)

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