miRTarBase - #MIRT446198


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pre-miRNA Information
pre-miRNA hsa-mir-939   
Genomic Coordinates chr8: 144394149 - 144394230
Synonyms MIRN939, hsa-mir-939, MIR939
Description Homo sapiens miR-939 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-939-5p
Sequence 15| UGGGGAGCUGAGGCUCUGGGGGUG |38
Evidence Experimental
Experiments Cloned
DRVs in miRNA
Mutant ID Mutant Position Mutant Source
COSN30593009 5 COSMIC
COSN30543331 16 COSMIC
COSN14667885 23 COSMIC
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs1384036144 1 dbSNP
rs1395761717 5 dbSNP
rs1311227571 6 dbSNP
rs371302764 7 dbSNP
rs376683753 10 dbSNP
rs530381565 19 dbSNP
rs374825674 20 dbSNP
rs781946129 21 dbSNP
rs1327403764 22 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
miRNAs in Extracellular Vesicles
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol GTPBP4   
Synonyms CRFG, NGB, NOG1
Description GTP binding protein 4
Transcript NM_012341   
Expression
Putative miRNA Targets on GTPBP4
3'UTR of GTPBP4
(miRNA target sites are highlighted)		 
>GTPBP4|NM_012341|3'UTR
   1 TATCCGTTTGGTTGGCGTGGCTTCGCTAGAGTGTTGCTGTTTATTTCCTGGTTTGGCACAGTATGGTTTCATGAAATTGG
  81 AGCTCTGTATAAACTGAAAAAGACAAAATAAGTAAAGCACTTGTTGCTTTGCTGAAAACTATGGTTAACCCTATATAGGT
 161 GTGGGAAATTTTTGTCACTGCATAATATTACAAATATTTTGAGTAGACAGTGTTTCCACATTTAATGGAGTATCAGTTGC
 241 TTCAGATTTTCAGAACTGGGAAGATTTACTGGTGTAACTGGGTTGTTTTTGATGGAGAAAAACCTTATTTTCTTTTGTAA
 321 GAGCTGGGAGCAAACACGTTTATGAGTGTGTCGGAATCCCGTGCTTAAAATACGCTCTTAAATTATTTTCTAGTCTTATT
 401 TTACAATGTCTCATTGTAGTCTGTCTTCAACTATTTTATCCAAAATAAACCTCCAGAAGAAAGTAGTTTTCATTTACTTA
 481 GCTCATGTTTTGGTTTAGTTATAGTCGCTATGGATTTGGCCAAATAAAAAGGCAAACAACAAAAAAAAAAAAAAAAAAAA
 561 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' guggggGUCUCGGAGU---CGAGGggu 5'
                ::|||: |||   |||:|   
Target 5' atttaaTGGAGTATCAGTTGCTTCaga 3'
 220 - 246 102.00 -14.30
2 
miRNA  3' guggGGGUCUCGGAGU-----CGAGGGgu 5'
              :|| | ||:| |     ||||::  
Target 5' ggaaTCCCGTGCTTAAAATACGCTCTTaa 3'
 353 - 381 100.00 -13.60
3 
miRNA  3' guGGGGGUCU--CGGAGUCGAGGGGu 5'
            || :: |:  | | ::|||:| | 
Target 5' atCCGTTTGGTTGGCGTGGCTTCGCt 3'
 2 - 27 100.00 -11.70
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN26636267 7 COSMIC
COSN26644880 7 COSMIC
COSN30138543 17 COSMIC
COSN30533209 23 COSMIC
COSN31513528 29 COSMIC
COSN1111677 37 COSMIC
COSN30157691 37 COSMIC
COSN30179067 74 COSMIC
COSN30529161 82 COSMIC
COSN30155237 84 COSMIC
COSN30145111 96 COSMIC
COSN30171848 103 COSMIC
COSN31565903 109 COSMIC
COSN30728628 110 COSMIC
COSN30164995 129 COSMIC
COSN14632993 355 COSMIC
COSN26284924 807 COSMIC
COSN32219982 900 COSMIC
COSN17263370 1364 COSMIC
COSN8337643 1832 COSMIC
COSN1111706 2042 COSMIC
COSN31549635 2190 COSMIC
COSN31605919 2194 COSMIC
COSN13251823 2239 COSMIC
COSN31561449 2278 COSMIC
COSN30509444 2288 COSMIC
COSM291816 2292 COSMIC
COSM3786319 2316 COSMIC
COSM914580 2324 COSMIC
COSM3358622 2325 COSMIC
COSM9458174 2329 COSMIC
COSM290114 2333 COSMIC
COSM5806228 2333 COSMIC
COSM9315797 2351 COSMIC
COSM8475034 2355 COSMIC
COSM1210238 2356 COSMIC
COSM5950034 2362 COSMIC
COSM8257058 2371 COSMIC
COSM3382662 2376 COSMIC
COSM8262847 2391 COSMIC
COSM1241289 2394 COSMIC
COSM8310782 2403 COSMIC
COSM8983190 2410 COSMIC
COSM123693 2415 COSMIC
COSM2060541 2423 COSMIC
COSM5071833 2442 COSMIC
COSM4551448 2446 COSMIC
COSM5653163 2449 COSMIC
COSM6550651 2456 COSMIC
COSM4424805 2459 COSMIC
COSM3866463 2471 COSMIC
COSM5049871 2483 COSMIC
COSM7694469 2485 COSMIC
COSM7694454 2492 COSMIC
COSM9084094 2499 COSMIC
COSM7304582 2506 COSMIC
COSM9458381 2507 COSMIC
COSM8146023 2508 COSMIC
COSM7855759 2533 COSMIC
COSM9326571 2533 COSMIC
COSM9768723 2533 COSMIC
COSM683425 2539 COSMIC
COSM3806408 2550 COSMIC
COSM4691752 2560 COSMIC
COSM683424 2563 COSMIC
COSM3396908 2587 COSMIC
COSM4831254 2592 COSMIC
COSM4832899 2599 COSMIC
COSM6530750 2602 COSMIC
COSN18315739 2657 COSMIC
rs1044261 2544 GWAS
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs145566026 2 dbSNP
rs375779373 6 dbSNP
rs1410006083 7 dbSNP
rs1158597168 11 dbSNP
rs368768692 12 dbSNP
rs41294978 13 dbSNP
rs752580538 14 dbSNP
rs369588499 17 dbSNP
rs553464166 18 dbSNP
rs1040752110 19 dbSNP
rs746103388 21 dbSNP
rs573233636 25 dbSNP
rs780060880 26 dbSNP
rs371888406 27 dbSNP
rs759771680 27 dbSNP
rs1310618434 28 dbSNP
rs769519461 30 dbSNP
rs376878564 37 dbSNP
rs971356237 48 dbSNP
rs775219029 50 dbSNP
rs981345492 62 dbSNP
rs372140582 65 dbSNP
rs1009424482 67 dbSNP
rs1434369288 70 dbSNP
rs1042313514 72 dbSNP
rs560027587 73 dbSNP
rs755735176 74 dbSNP
rs1457914440 89 dbSNP
rs1003282100 93 dbSNP
rs1161501055 95 dbSNP
rs1362757055 95 dbSNP
rs1368969339 97 dbSNP
rs1035696490 98 dbSNP
rs371978527 105 dbSNP
rs1295346198 107 dbSNP
rs959007978 109 dbSNP
rs1247117262 115 dbSNP
rs545431527 118 dbSNP
rs777236606 121 dbSNP
rs989939152 124 dbSNP
rs528445784 144 dbSNP
rs1356334345 151 dbSNP
rs753659880 156 dbSNP
rs3763719 162 dbSNP
rs932693734 170 dbSNP
rs1248725181 182 dbSNP
rs985497048 183 dbSNP
rs575669450 185 dbSNP
rs543762510 191 dbSNP
rs1436138546 201 dbSNP
rs1328404711 207 dbSNP
rs563540639 212 dbSNP
rs1188427891 218 dbSNP
rs1404832907 220 dbSNP
rs1391450679 221 dbSNP
rs1037321661 223 dbSNP
rs1446790338 231 dbSNP
rs1427683934 235 dbSNP
rs1389361760 240 dbSNP
rs1188934578 241 dbSNP
rs1244612294 247 dbSNP
rs1476220224 247 dbSNP
rs897411018 253 dbSNP
rs931473871 254 dbSNP
rs1451679983 261 dbSNP
rs2387218 275 dbSNP
rs2387219 281 dbSNP
rs559447052 282 dbSNP
rs976787690 285 dbSNP
rs528166604 292 dbSNP
rs1435952472 297 dbSNP
rs780186512 305 dbSNP
rs1331773960 306 dbSNP
rs14585 308 dbSNP
rs989208845 312 dbSNP
rs1013056857 317 dbSNP
rs1345813220 320 dbSNP
rs1411445399 329 dbSNP
rs1422714508 336 dbSNP
rs750429831 338 dbSNP
rs1478124486 339 dbSNP
rs749045206 343 dbSNP
rs1802507 345 dbSNP
rs113359405 353 dbSNP
rs190238446 354 dbSNP
rs1453086135 356 dbSNP
rs1482393934 357 dbSNP
rs548223165 359 dbSNP
rs41285589 361 dbSNP
rs541949461 362 dbSNP
rs1439928544 364 dbSNP
rs1218891870 372 dbSNP
rs1324504784 372 dbSNP
rs41285591 374 dbSNP
rs1021854268 375 dbSNP
rs761729059 378 dbSNP
rs1027014565 380 dbSNP
rs781571555 396 dbSNP
rs1444225820 398 dbSNP
rs748502867 399 dbSNP
rs1327817246 401 dbSNP
rs1333216825 406 dbSNP
rs1414730545 410 dbSNP
rs1206325308 414 dbSNP
rs1156405369 417 dbSNP
rs1471980793 424 dbSNP
rs182074838 432 dbSNP
rs1411977817 446 dbSNP
rs77429152 452 dbSNP
rs985977890 454 dbSNP
rs770324305 462 dbSNP
rs1236131712 467 dbSNP
rs944060989 482 dbSNP
rs771970644 486 dbSNP
rs1461982814 488 dbSNP
rs1015768620 492 dbSNP
rs965981670 493 dbSNP
rs972691396 499 dbSNP
rs1307735886 500 dbSNP
rs918852042 503 dbSNP
rs931526155 507 dbSNP
rs1029014638 508 dbSNP
rs186561085 509 dbSNP
rs989177501 515 dbSNP
rs914990799 526 dbSNP
rs945109866 527 dbSNP
rs978294746 530 dbSNP
rs927830635 534 dbSNP
rs895326336 539 dbSNP
rs939242551 542 dbSNP
rs948230861 553 dbSNP
rs1044570775 566 dbSNP
rs906959068 578 dbSNP
rs1445628161 579 dbSNP
rs546873886 579 dbSNP
rs895095886 584 dbSNP
rs1245291032 592 dbSNP
rs1186935195 596 dbSNP
rs948715527 604 dbSNP
rs191463916 609 dbSNP
rs888494119 615 dbSNP
rs1319923760 620 dbSNP
rs1031262839 624 dbSNP
rs891726773 625 dbSNP
rs1289064393 631 dbSNP
rs112191121 638 dbSNP
rs1004263262 642 dbSNP
rs1037579801 643 dbSNP
rs901320736 646 dbSNP
rs538766096 647 dbSNP
rs373659147 654 dbSNP
rs772747721 661 dbSNP
rs954048482 662 dbSNP
rs1164709857 663 dbSNP
rs575724443 666 dbSNP
rs201567531 676 dbSNP
rs1333441822 680 dbSNP
rs148873287 683 dbSNP
rs538228133 685 dbSNP
rs116363558 686 dbSNP
rs966420647 690 dbSNP
rs1262688963 705 dbSNP
rs557322455 716 dbSNP
rs977885660 720 dbSNP
rs572422669 724 dbSNP
rs55804377 726 dbSNP
rs965422743 728 dbSNP
rs991094617 735 dbSNP
rs763611656 736 dbSNP
rs1227381839 741 dbSNP
rs1284722343 743 dbSNP
rs542850457 744 dbSNP
rs1297286527 754 dbSNP
rs972743629 755 dbSNP
rs1366319474 762 dbSNP
rs918569222 765 dbSNP
rs771552420 766 dbSNP
rs559296531 773 dbSNP
rs1367979350 776 dbSNP
rs916496117 779 dbSNP
rs1491469043 793 dbSNP
rs930566288 794 dbSNP
rs1441019631 795 dbSNP
rs1048350466 796 dbSNP
rs1431611859 801 dbSNP
rs909900663 803 dbSNP
rs535719438 809 dbSNP
rs557960311 809 dbSNP
rs1252800139 811 dbSNP
rs984806350 813 dbSNP
rs1180300982 814 dbSNP
rs1431463758 824 dbSNP
rs1230648874 830 dbSNP
rs578035242 833 dbSNP
rs916828707 841 dbSNP
rs948258256 842 dbSNP
rs1046519830 843 dbSNP
rs10903348 849 dbSNP
rs544795370 855 dbSNP
rs564601606 856 dbSNP
rs1052786042 858 dbSNP
rs1411426018 865 dbSNP
rs890008117 873 dbSNP
rs1300227380 879 dbSNP
rs760331278 882 dbSNP
rs568203594 889 dbSNP
rs1011174550 892 dbSNP
rs1011234003 893 dbSNP
rs1369552382 896 dbSNP
rs35803709 896 dbSNP
rs1177330441 900 dbSNP
rs1481464224 907 dbSNP
rs1409782287 908 dbSNP
rs1407541483 909 dbSNP
rs1304607146 912 dbSNP
rs764566696 912 dbSNP
rs1419561029 915 dbSNP
rs1252457081 916 dbSNP
rs1198492665 926 dbSNP
rs530455327 927 dbSNP
rs1345551817 931 dbSNP
rs1482758794 932 dbSNP
rs1021944627 939 dbSNP
rs1205106033 940 dbSNP
rs1231943615 950 dbSNP
rs1287111409 959 dbSNP
rs1239007479 967 dbSNP
rs1274758013 971 dbSNP
rs1343567214 972 dbSNP
rs1309677478 975 dbSNP
rs1216689195 976 dbSNP
rs966349305 980 dbSNP
rs1275717586 982 dbSNP
rs889672987 984 dbSNP
rs1382409931 986 dbSNP
rs1007146834 991 dbSNP
rs1341910887 994 dbSNP
rs181173293 996 dbSNP
rs965473238 1001 dbSNP
rs994275643 1003 dbSNP
rs1025720004 1004 dbSNP
rs138708053 1005 dbSNP
rs563695826 1006 dbSNP
rs916819784 1009 dbSNP
rs1476389531 1011 dbSNP
rs1169146058 1015 dbSNP
rs1389268152 1016 dbSNP
rs1205190353 1025 dbSNP
rs969632916 1026 dbSNP
rs1243181954 1028 dbSNP
rs1382527798 1034 dbSNP
rs1316121247 1056 dbSNP
rs1165054056 1057 dbSNP
rs763671724 1059 dbSNP
rs1385724198 1060 dbSNP
rs1387155128 1069 dbSNP
rs1161412068 1070 dbSNP
rs928112282 1071 dbSNP
rs951937952 1072 dbSNP
rs1165214063 1073 dbSNP
rs1447344680 1075 dbSNP
rs984692609 1076 dbSNP
rs935489077 1083 dbSNP
rs965390369 1085 dbSNP
rs1052834519 1089 dbSNP
rs912981802 1091 dbSNP
rs113020861 1092 dbSNP
rs1359316178 1096 dbSNP
rs12259230 1100 dbSNP
rs1248612309 1109 dbSNP
rs1269839846 1112 dbSNP
rs1228363347 1120 dbSNP
rs889716171 1121 dbSNP
rs1321632509 1128 dbSNP
rs530919156 1129 dbSNP
rs552424916 1130 dbSNP
rs550700722 1134 dbSNP
rs538291280 1143 dbSNP
rs554995485 1146 dbSNP
rs185259368 1147 dbSNP
rs1043988545 1152 dbSNP
rs1189091930 1153 dbSNP
rs1225285376 1154 dbSNP
rs1436450952 1155 dbSNP
rs902799564 1159 dbSNP
rs999198347 1161 dbSNP
rs1035101978 1164 dbSNP
rs1185257587 1166 dbSNP
rs1222978405 1170 dbSNP
rs1346156025 1173 dbSNP
rs4880469 1174 dbSNP
rs1457041540 1175 dbSNP
rs1161113912 1176 dbSNP
rs1386425080 1177 dbSNP
rs1012425447 1179 dbSNP
rs1329261887 1179 dbSNP
rs1321769441 1189 dbSNP
rs1388608804 1191 dbSNP
rs1433329600 1192 dbSNP
rs1175174582 1193 dbSNP
rs1023403344 1196 dbSNP
rs1460757353 1197 dbSNP
rs775718568 1197 dbSNP
rs879061965 1197 dbSNP
rs78880820 1198 dbSNP
rs1261499950 1199 dbSNP
rs867291285 1205 dbSNP
rs1324400641 1207 dbSNP
rs1265041851 1209 dbSNP
rs74801693 1212 dbSNP
rs1014790000 1213 dbSNP
rs1222045286 1213 dbSNP
rs918869186 1214 dbSNP
rs1444108696 1215 dbSNP
rs12251749 1216 dbSNP
rs1335691233 1217 dbSNP
rs572965083 1223 dbSNP
rs368810643 1225 dbSNP
rs1005973123 1227 dbSNP
rs1209496266 1237 dbSNP
rs1399523281 1242 dbSNP
rs1407886274 1243 dbSNP
rs111718565 1244 dbSNP
rs144716512 1245 dbSNP
rs1463541733 1247 dbSNP
rs982358491 1250 dbSNP
rs1205490756 1261 dbSNP
rs564668421 1269 dbSNP
rs934066696 1272 dbSNP
rs55861099 1283 dbSNP
rs148114112 1284 dbSNP
rs1225339804 1285 dbSNP
rs956909732 1285 dbSNP
rs1357046603 1286 dbSNP
rs1314067394 1288 dbSNP
rs1452974661 1290 dbSNP
rs1286680285 1295 dbSNP
rs142914031 1297 dbSNP
rs56049801 1298 dbSNP
rs912982950 1304 dbSNP
rs1160496628 1305 dbSNP
rs947130287 1308 dbSNP
rs560561714 1309 dbSNP
rs529645445 1310 dbSNP
rs1056107114 1311 dbSNP
rs1157847214 1313 dbSNP
rs1388541648 1314 dbSNP
rs868663172 1319 dbSNP
rs1456048733 1320 dbSNP
rs1242729622 1321 dbSNP
rs1305125043 1325 dbSNP
rs1403295238 1330 dbSNP
rs1246429525 1331 dbSNP
rs1361251081 1335 dbSNP
rs896160614 1339 dbSNP
rs1395851168 1342 dbSNP
rs1332410455 1348 dbSNP
rs540585801 1349 dbSNP
rs1290086469 1353 dbSNP
rs942345897 1354 dbSNP
rs1287735438 1357 dbSNP
rs1041015454 1358 dbSNP
rs183405204 1359 dbSNP
rs1168636941 1364 dbSNP
rs901086340 1365 dbSNP
rs1049060336 1369 dbSNP
rs866330625 1370 dbSNP
rs1188341185 1376 dbSNP
rs929796723 1378 dbSNP
rs1046895430 1379 dbSNP
rs961959268 1393 dbSNP
rs888540456 1396 dbSNP
rs1198564622 1398 dbSNP
rs1005611203 1399 dbSNP
rs189120043 1409 dbSNP
rs191797079 1410 dbSNP
rs1344255343 1412 dbSNP
rs1409054094 1426 dbSNP
rs1283224659 1431 dbSNP
rs1406039948 1436 dbSNP
rs905227066 1438 dbSNP
rs1003496752 1440 dbSNP
rs985493445 1442 dbSNP
rs1461723066 1444 dbSNP
rs1355327497 1448 dbSNP
rs1173001837 1449 dbSNP
rs7358216 1450 dbSNP
rs1428623466 1451 dbSNP
rs531849862 1453 dbSNP
rs956920046 1454 dbSNP
rs1248212518 1455 dbSNP
rs1480793428 1460 dbSNP
rs1252706890 1461 dbSNP
rs1201328459 1462 dbSNP
rs946786064 1466 dbSNP
rs988282786 1468 dbSNP
rs979562163 1471 dbSNP
rs1224712362 1472 dbSNP
rs1372805399 1474 dbSNP
rs548652559 1475 dbSNP
rs1305391660 1481 dbSNP
rs968605891 1485 dbSNP
rs978566331 1486 dbSNP
rs1348670320 1487 dbSNP
rs373717914 1490 dbSNP
rs534166448 1492 dbSNP
rs1467577032 1497 dbSNP
rs976373985 1499 dbSNP
rs1311589540 1506 dbSNP
rs1230783643 1507 dbSNP
rs1181405744 1511 dbSNP
rs1276425645 1513 dbSNP
rs910024542 1514 dbSNP
rs1205006856 1517 dbSNP
rs1347836783 1521 dbSNP
rs1259497630 1522 dbSNP
rs1238896874 1525 dbSNP
rs1317927709 1530 dbSNP
rs111433428 1531 dbSNP
rs1450787427 1536 dbSNP
rs1382294116 1537 dbSNP
rs111784775 1539 dbSNP
rs1036174620 1540 dbSNP
rs372604702 1544 dbSNP
rs1047355304 1547 dbSNP
rs1381988485 1559 dbSNP
rs1490691038 1560 dbSNP
rs997386728 1561 dbSNP
rs1030656964 1566 dbSNP
rs184075718 1567 dbSNP
rs1235776241 1579 dbSNP
rs1244231518 1579 dbSNP
rs74459296 1579 dbSNP
rs879033110 1579 dbSNP
rs1174594708 1588 dbSNP
rs1316012916 1594 dbSNP
rs1359089622 1594 dbSNP
rs1392365164 1595 dbSNP
rs941784401 1596 dbSNP
rs1430840480 1597 dbSNP
rs1324797305 1599 dbSNP
rs71505900 1605 dbSNP
rs186920154 1606 dbSNP
rs1368997780 1607 dbSNP
rs941184188 1616 dbSNP
rs1301139224 1618 dbSNP
rs11594590 1626 dbSNP
rs201427831 1627 dbSNP
rs1006856247 1631 dbSNP
rs1164666674 1631 dbSNP
rs1018295653 1643 dbSNP
rs1372048250 1644 dbSNP
rs968097064 1646 dbSNP
rs905237769 1649 dbSNP
rs765078249 1661 dbSNP
rs1265981997 1668 dbSNP
rs1220831116 1669 dbSNP
rs1490295466 1673 dbSNP
rs979532650 1676 dbSNP
rs1211901632 1681 dbSNP
rs752028795 1691 dbSNP
rs543907141 1695 dbSNP
rs1003508138 1697 dbSNP
rs1228247159 1705 dbSNP
rs1342383077 1708 dbSNP
rs140153834 1713 dbSNP
rs1365610169 1715 dbSNP
rs1325254956 1717 dbSNP
rs924075537 1727 dbSNP
rs1395316942 1728 dbSNP
rs957081989 1738 dbSNP
rs1466746552 1740 dbSNP
rs892739602 1744 dbSNP
rs1247709692 1745 dbSNP
rs143878742 1745 dbSNP
rs918122306 1756 dbSNP
rs948313915 1757 dbSNP
rs191479290 1764 dbSNP
rs1199450878 1767 dbSNP
rs1320130806 1771 dbSNP
rs2170142 1774 dbSNP
rs150913808 1775 dbSNP
rs1018024464 1779 dbSNP
rs546476769 1780 dbSNP
rs1051451 1781 dbSNP
rs183675741 1788 dbSNP
rs976427759 1789 dbSNP
rs1250490407 1791 dbSNP
rs997756868 1796 dbSNP
rs1450450573 1810 dbSNP
rs1469795403 1811 dbSNP
rs1426485132 1812 dbSNP
rs76090504 1816 dbSNP
rs889003169 1823 dbSNP
rs533568845 1824 dbSNP
rs1018266227 1832 dbSNP
rs190658894 1832 dbSNP
rs568529702 1833 dbSNP
rs1203108443 1839 dbSNP
rs1312781090 1842 dbSNP
rs181957524 1847 dbSNP
rs1031498735 1849 dbSNP
rs956813273 1853 dbSNP
rs1309676540 1862 dbSNP
rs1349322702 1865 dbSNP
rs1241935854 1879 dbSNP
rs1380111277 1883 dbSNP
rs909787576 1885 dbSNP
rs547769363 1888 dbSNP
rs1452741170 1896 dbSNP
rs1360339292 1898 dbSNP
rs1336750848 1901 dbSNP
rs1399429894 1920 dbSNP
rs941206157 1924 dbSNP
rs1407775770 1925 dbSNP
rs918096742 1928 dbSNP
rs1045268340 1933 dbSNP
rs969586627 1934 dbSNP
rs1183159653 1939 dbSNP
rs980970881 1945 dbSNP
rs909496777 1955 dbSNP
rs1213608402 1957 dbSNP
rs926724012 1963 dbSNP
rs2127607 1966 dbSNP
rs1056456921 1967 dbSNP
rs918962915 1976 dbSNP
rs892498509 1988 dbSNP
rs1380760066 1995 dbSNP
rs1267870986 2000 dbSNP
rs1345110309 2001 dbSNP
rs74669000 2001 dbSNP
rs1434085318 2002 dbSNP
rs558384193 2017 dbSNP
rs185457666 2018 dbSNP
rs1421919708 2020 dbSNP
rs17221491 2025 dbSNP
rs3214941 2038 dbSNP
rs397840030 2038 dbSNP
rs1007732853 2063 dbSNP
rs904477222 2064 dbSNP
rs1416118095 2069 dbSNP
rs770269015 2071 dbSNP
rs1184846171 2075 dbSNP
rs189984608 2079 dbSNP
rs10159989 2084 dbSNP
rs892515284 2092 dbSNP
rs1270556589 2096 dbSNP
rs1489806405 2101 dbSNP
rs1013688410 2103 dbSNP
rs1221908857 2117 dbSNP
rs997958281 2122 dbSNP
rs539888600 2125 dbSNP
rs1208652195 2134 dbSNP
rs1213481598 2137 dbSNP
rs1340535347 2141 dbSNP
rs951061455 2147 dbSNP
rs149879492 2161 dbSNP
rs980939876 2172 dbSNP
rs1293282834 2174 dbSNP
rs576714741 2177 dbSNP
rs1473990648 2178 dbSNP
rs557918948 2180 dbSNP
rs1168524852 2189 dbSNP
rs778675165 2192 dbSNP
rs1409471770 2193 dbSNP
rs181293230 2200 dbSNP
rs1195804800 2203 dbSNP
rs1479401514 2207 dbSNP
rs1267986471 2214 dbSNP
rs1191550341 2215 dbSNP
rs1489300901 2217 dbSNP
rs1422119324 2218 dbSNP
rs1203320258 2219 dbSNP
rs1161548277 2221 dbSNP
rs1259396207 2222 dbSNP
rs41294966 2227 dbSNP
rs371366202 2233 dbSNP
rs1322021513 2236 dbSNP
rs918944091 2239 dbSNP
rs41260144 2240 dbSNP
rs772583378 2242 dbSNP
rs768250133 2249 dbSNP
rs1318119129 2253 dbSNP
rs760312067 2259 dbSNP
rs939176714 2262 dbSNP
rs1278343186 2265 dbSNP
rs766025081 2266 dbSNP
rs1211812343 2267 dbSNP
rs368911024 2274 dbSNP
rs764684598 2275 dbSNP
rs201116307 2276 dbSNP
rs758272972 2277 dbSNP
rs1420872917 2278 dbSNP
rs762608638 2281 dbSNP
rs1374363376 2287 dbSNP
rs763930471 2289 dbSNP
rs578143320 2290 dbSNP
rs41314629 2291 dbSNP
rs17851563 2292 dbSNP
rs1279396779 2293 dbSNP
rs749433349 2294 dbSNP
rs763691592 2295 dbSNP
rs376276027 2297 dbSNP
rs751586172 2298 dbSNP
rs1235127260 2306 dbSNP
rs779081589 2309 dbSNP
rs748725666 2312 dbSNP
rs772702258 2313 dbSNP
rs1460432535 2320 dbSNP
rs773751824 2321 dbSNP
rs771153310 2322 dbSNP
rs1314345196 2324 dbSNP
rs527537227 2324 dbSNP
rs759042155 2325 dbSNP
rs564510161 2327 dbSNP
rs892446955 2330 dbSNP
rs370074580 2332 dbSNP
rs1454280459 2333 dbSNP
rs762940863 2336 dbSNP
rs763983625 2338 dbSNP
rs1401524867 2339 dbSNP
rs1008201247 2342 dbSNP
rs759178966 2343 dbSNP
rs751356247 2344 dbSNP
rs761688394 2347 dbSNP
rs138894690 2348 dbSNP
rs533129607 2351 dbSNP
rs200869545 2355 dbSNP
rs779205871 2356 dbSNP
rs376118683 2357 dbSNP
rs1190967051 2360 dbSNP
rs140484326 2366 dbSNP
rs905325500 2367 dbSNP
rs771329449 2369 dbSNP
rs781353616 2371 dbSNP
rs41299208 2372 dbSNP
rs775017505 2373 dbSNP
rs548356090 2376 dbSNP
rs1346776064 2377 dbSNP
rs768103886 2378 dbSNP
rs370782776 2383 dbSNP
rs1239899884 2386 dbSNP
rs761820152 2387 dbSNP
rs767407623 2389 dbSNP
rs1294799297 2390 dbSNP
rs138472250 2391 dbSNP
rs886824173 2394 dbSNP
rs1467446692 2400 dbSNP
rs759878110 2405 dbSNP
rs41294968 2408 dbSNP
rs767304048 2408 dbSNP
rs762900392 2409 dbSNP
rs1394382532 2410 dbSNP
rs766204721 2412 dbSNP
rs201575182 2414 dbSNP
rs752920216 2415 dbSNP
rs574093260 2420 dbSNP
rs758583790 2423 dbSNP
rs1342686527 2429 dbSNP
rs750260777 2433 dbSNP
rs1191674509 2434 dbSNP
rs113442797 2437 dbSNP
rs752119862 2438 dbSNP
rs553555744 2441 dbSNP
rs1485123098 2442 dbSNP
rs1277786003 2445 dbSNP
rs1211520238 2448 dbSNP
rs1282089410 2449 dbSNP
rs757691293 2450 dbSNP
rs781668902 2451 dbSNP
rs1183200946 2456 dbSNP
rs1033551955 2458 dbSNP
rs199526966 2459 dbSNP
rs755009686 2460 dbSNP
rs1225144422 2462 dbSNP
rs746195930 2463 dbSNP
rs755794752 2466 dbSNP
rs769482088 2467 dbSNP
rs267602352 2471 dbSNP
rs779206640 2471 dbSNP
rs779699884 2472 dbSNP
rs748896256 2477 dbSNP
rs200578674 2478 dbSNP
rs748186489 2482 dbSNP
rs142054626 2486 dbSNP
rs752907841 2487 dbSNP
rs756409644 2488 dbSNP
rs200190161 2492 dbSNP
rs1286862183 2495 dbSNP
rs766237993 2496 dbSNP
rs775861577 2500 dbSNP
rs201862890 2501 dbSNP
rs1246733274 2504 dbSNP
rs1277627690 2507 dbSNP
rs1419260167 2509 dbSNP
rs764291421 2513 dbSNP
rs1349948487 2516 dbSNP
rs138902540 2519 dbSNP
rs1287607839 2520 dbSNP
rs1484469917 2522 dbSNP
rs757818684 2523 dbSNP
rs41294970 2525 dbSNP
rs767884934 2526 dbSNP
rs750878157 2530 dbSNP
rs367884621 2535 dbSNP
rs41294972 2538 dbSNP
rs780341800 2539 dbSNP
rs41294974 2540 dbSNP
rs1470116784 2542 dbSNP
rs1044261 2544 dbSNP
rs1362495261 2546 dbSNP
rs147373006 2556 dbSNP
rs576808585 2557 dbSNP
rs949410827 2558 dbSNP
rs1340741373 2563 dbSNP
rs752905367 2566 dbSNP
rs1232695478 2571 dbSNP
rs758543268 2574 dbSNP
rs139607943 2576 dbSNP
rs1314092559 2577 dbSNP
rs905253524 2580 dbSNP
rs1002257816 2584 dbSNP
rs771562485 2588 dbSNP
rs1232946103 2592 dbSNP
rs773314383 2597 dbSNP
rs113541732 2611 dbSNP
rs746877846 2612 dbSNP
rs1395793969 2613 dbSNP
rs1248909493 2614 dbSNP
rs10160004 2621 dbSNP
rs368201188 2622 dbSNP
rs1159850937 2624 dbSNP
rs763333659 2627 dbSNP
rs1470293880 2628 dbSNP
rs764191760 2630 dbSNP
rs1362900227 2634 dbSNP
rs777803253 2634 dbSNP
rs1469664905 2638 dbSNP
rs747567628 2638 dbSNP
rs774535404 2640 dbSNP
rs372462801 2641 dbSNP
rs1241448450 2643 dbSNP
rs767591457 2646 dbSNP
rs750931570 2649 dbSNP
rs771491159 2651 dbSNP
rs1368705964 2652 dbSNP
rs756603336 2654 dbSNP
rs766799448 2655 dbSNP
rs1286407387 2656 dbSNP
rs1004395171 2657 dbSNP
rs1350177523 2661 dbSNP
rs1278026481 2676 dbSNP
rs1016673041 2682 dbSNP
rs898191140 2687 dbSNP
rs572501482 2690 dbSNP
rs1372187417 2692 dbSNP
rs1325728802 2700 dbSNP
rs1391529082 2706 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796037. RNA binding protein: AGO2. Condition:4-Thiouridine PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' gugggggucucggagucGAGGGGu 5'
                           |||||| 
Target 5' ----------ucaagauCUCCCCa 3'
 		1 - 14
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796037
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000360803.4 | 3UTR | UCAAGAUCUCCCCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
CLIP-seq Support 2 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000360803.4 | 3UTR | UCAAGAUCUCCCCAAG
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
GSE28544 Breast cancer 0.814 6.5e-7 0.716 4.2e-5 24 Click to see details
GSE21032 Prostate cancer -0.159 7.6e-2 -0.187 4.5e-2 83 Click to see details
GSE19350 CNS germ cell tumors 0.397 1.0e-1 0.026 4.7e-1 12 Click to see details
GSE32688 Pancreatic cancer -0.211 1.2e-1 -0.238 9.5e-2 32 Click to see details
GSE34608 Pulmonary tuberculosis and sarcoidosis 0.262 1.3e-1 0.301 9.9e-2 20 Click to see details
GSE42095 Differentiated embryonic stem cells -0.233 1.4e-1 -0.159 2.3e-1 23 Click to see details
GSE38226 Liver fibrosis 0.19 2.0e-1 0.254 1.3e-1 21 Click to see details
GSE21687 Ependynoma primary tumors -0.07 2.9e-1 0.056 3.3e-1 64 Click to see details
GSE26953 Aortic valvular endothelial cells -0.104 3.1e-1 -0.111 3.0e-1 24 Click to see details
GSE17498 Multiple myeloma -0.067 3.4e-1 0.005 4.9e-1 40 Click to see details
GSE28260 Renal cortex and medulla -0.1 3.7e-1 -0.143 3.2e-1 13 Click to see details
GSE19783 ER- ER- breast cancer -0.036 3.8e-1 -0.078 2.5e-1 79 Click to see details
GSE19536 Breast cancer -0.027 3.9e-1 -0.038 3.5e-1 100 Click to see details
GSE35602 Colorectal cancer stromal tissue 0.049 4.1e-1 0.368 3.5e-2 25 Click to see details
GSE15076 Monocyte-derived dendritic cells -0.058 4.4e-1 -0.133 3.7e-1 9 Click to see details
GSE38974 Chronic obstructive pulmonary disease -0.023 4.6e-1 -0.060 3.9e-1 25 Click to see details
GSE19783 ER+ ER+ breast cancer -0.025 4.6e-1 0.042 4.3e-1 20 Click to see details
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
BRCA 0.283 0.01 0.300 0.01 64 Click to see details
LUSC 0.377 0.01 0.250 0.08 34 Click to see details
UCEC 0.418 0.05 0.382 0.07 16 Click to see details
KICH 0.319 0.07 0.169 0.23 22 Click to see details
STAD 0.268 0.09 0.297 0.07 27 Click to see details
LUAD 0.524 0.09 0.262 0.27 8 Click to see details
HNSC 0.218 0.1 0.210 0.11 37 Click to see details
CHOL -0.555 0.17 0.000 0.5 5 Click to see details
PRAD 0.287 0.18 0.531 0.04 12 Click to see details
COAD 0.358 0.19 0.357 0.19 8 Click to see details
ESCA -0.318 0.2 -0.150 0.35 9 Click to see details
PAAD 0.767 0.22 0.500 0.33 3 Click to see details
CESC -0.685 0.26 -0.500 0.33 3 Click to see details
BLCA 0.152 0.31 0.044 0.44 13 Click to see details
LIHC 0.064 0.34 0.080 0.31 42 Click to see details
KIRC 0.079 0.36 0.064 0.38 24 Click to see details
KIRP 0.027 0.45 0.129 0.27 24 Click to see details
THCA 0.011 0.47 0.053 0.36 50 Click to see details
PCPG -0.044 0.49 0.500 0.33 3 Click to see details
PCPG -0.044 0.49 0.500 0.33 3 Click to see details
PCPG -0.044 0.49 0.500 0.33 3 Click to see details
137 hsa-miR-939-5p Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT016026 IL6 interleukin 6 1 1
MIRT036634 SH3BP2 SH3 domain binding protein 2 1 1
MIRT036636 AMPD2 adenosine monophosphate deaminase 2 1 1
MIRT168693 CDKN1A cyclin dependent kinase inhibitor 1A 2 2
MIRT189766 CDADC1 cytidine and dCMP deaminase domain containing 1 2 2
MIRT443840 RGS6 regulator of G protein signaling 6 2 2
MIRT446198 GTPBP4 GTP binding protein 4 2 2
MIRT448037 SFRP1 secreted frizzled related protein 1 2 2
MIRT451304 LGALS3BP galectin 3 binding protein 2 2
MIRT452319 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 2 2
MIRT453237 FTSJ3 FtsJ RNA methyltransferase homolog 3 2 2
MIRT453499 ARRB1 arrestin beta 1 2 2
MIRT453539 PRR12 proline rich 12 2 2
MIRT454899 SEPT8 septin 8 2 16
MIRT456442 TMEM81 transmembrane protein 81 2 2
MIRT456682 LDB1 LIM domain binding 1 2 2
MIRT457128 ASPH aspartate beta-hydroxylase 2 2
MIRT457177 ERC1 ELKS/RAB6-interacting/CAST family member 1 2 2
MIRT457597 IDS iduronate 2-sulfatase 2 2
MIRT458303 TNFAIP8L3 TNF alpha induced protein 8 like 3 2 2
MIRT458441 RPRM reprimo, TP53 dependent G2 arrest mediator homolog 2 2
MIRT460644 IGFBP4 insulin like growth factor binding protein 4 2 2
MIRT461453 SLC19A3 solute carrier family 19 member 3 2 2
MIRT462767 ZNF8 zinc finger protein 8 2 2
MIRT462989 ZNF740 zinc finger protein 740 2 2
MIRT463678 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT464110 VPS35 VPS35, retromer complex component 2 2
MIRT464412 UNC13A unc-13 homolog A 2 6
MIRT468613 SUMO1 small ubiquitin-like modifier 1 2 2
MIRT469602 RALGAPA2 Ral GTPase activating protein catalytic alpha subunit 2 2 2
MIRT469653 RAC1 Rac family small GTPase 1 2 2
MIRT473286 MFRP membrane frizzled-related protein 2 2
MIRT473602 MARK2 microtubule affinity regulating kinase 2 2 2
MIRT473659 MARCKSL1 MARCKS like 1 2 2
MIRT474691 KIF5A kinesin family member 5A 2 2
MIRT475660 HIC2 HIC ZBTB transcriptional repressor 2 2 2
MIRT477622 EFNA1 ephrin A1 2 2
MIRT478123 DIRAS1 DIRAS family GTPase 1 2 2
MIRT478439 DAZAP2 DAZ associated protein 2 2 4
MIRT478948 COX15 COX15, cytochrome c oxidase assembly homolog 2 2
MIRT479969 CARD10 caspase recruitment domain family member 10 2 2
MIRT480400 C19orf47 chromosome 19 open reading frame 47 2 2
MIRT482807 TRAF6 TNF receptor associated factor 6 2 2
MIRT482943 ZNF561 zinc finger protein 561 2 6
MIRT483651 QSOX2 quiescin sulfhydryl oxidase 2 2 4
MIRT485374 MSN moesin 2 4
MIRT485761 B4GALT5 beta-1,4-galactosyltransferase 5 2 2
MIRT485923 PGPEP1 pyroglutamyl-peptidase I 2 4
MIRT486240 FASTK Fas activated serine/threonine kinase 2 2
MIRT486844 SLC9A3R2 SLC9A3 regulator 2 2 2
MIRT486931 DTX2 deltex E3 ubiquitin ligase 2 2 2
MIRT487110 SCARF2 scavenger receptor class F member 2 2 2
MIRT487183 NFASC neurofascin 2 4
MIRT487208 HMX1 H6 family homeobox 1 2 2
MIRT487317 UBFD1 ubiquitin family domain containing 1 2 4
MIRT487809 PER3 period circadian clock 3 2 2
MIRT487828 CLSTN1 calsyntenin 1 2 4
MIRT488184 MAT1A methionine adenosyltransferase 1A 2 2
MIRT488637 HAND2 heart and neural crest derivatives expressed 2 2 2
MIRT488844 UBTF upstream binding transcription factor, RNA polymerase I 2 2
MIRT489101 ABCC5 ATP binding cassette subfamily C member 5 2 4
MIRT489220 ASCL2 achaete-scute family bHLH transcription factor 2 2 4
MIRT489354 SYNGR1 synaptogyrin 1 2 4
MIRT489729 GNAI2 G protein subunit alpha i2 2 4
MIRT489770 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 2 2
MIRT490573 SLC47A1 solute carrier family 47 member 1 2 2
MIRT490776 PSMD3 proteasome 26S subunit, non-ATPase 3 2 2
MIRT491529 HDAC5 histone deacetylase 5 2 2
MIRT492276 SHISA6 shisa family member 6 2 4
MIRT492700 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein 2 2
MIRT493311 LIMD2 LIM domain containing 2 2 2
MIRT493541 ICOSLG inducible T-cell costimulator ligand 2 4
MIRT494326 CASKIN1 CASK interacting protein 1 2 2
MIRT494828 ADCY9 adenylate cyclase 9 2 2
MIRT496769 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 2 2
MIRT496971 RPS6KA2 ribosomal protein S6 kinase A2 2 2
MIRT497036 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B 2 2
MIRT498911 SRCAP Snf2 related CREBBP activator protein 2 2
MIRT500012 ABCF2 ATP binding cassette subfamily F member 2 2 8
MIRT502228 HOXC6 homeobox C6 2 2
MIRT504105 FLOT1 flotillin 1 2 2
MIRT506428 NAGK N-acetylglucosamine kinase 2 6
MIRT507334 FAM168A family with sequence similarity 168 member A 2 2
MIRT507779 CDKN1B cyclin dependent kinase inhibitor 1B 2 2
MIRT510060 C12orf49 chromosome 12 open reading frame 49 2 4
MIRT511183 MAPRE1 microtubule associated protein RP/EB family member 1 2 2
MIRT511933 FAM127B retrotransposon Gag like 8A 2 2
MIRT513516 YIPF4 Yip1 domain family member 4 2 6
MIRT527160 ADRA2B adrenoceptor alpha 2B 2 2
MIRT535348 PFN1 profilin 1 2 2
MIRT536732 IER5 immediate early response 5 2 4
MIRT539177 AP1G1 adaptor related protein complex 1 gamma 1 subunit 2 2
MIRT544641 PHF8 PHD finger protein 8 2 4
MIRT553365 TRIM44 tripartite motif containing 44 2 2
MIRT568465 ARMC12 armadillo repeat containing 12 2 2
MIRT568969 CACNA1C calcium voltage-gated channel subunit alpha1 C 2 2
MIRT569007 CXorf36 chromosome X open reading frame 36 2 2
MIRT569035 IL21R interleukin 21 receptor 2 2
MIRT569719 GPR173 G protein-coupled receptor 173 2 2
MIRT569865 KLK10 kallikrein related peptidase 10 2 2
MIRT569912 PCSK9 proprotein convertase subtilisin/kexin type 9 2 2
MIRT570010 COL1A2 collagen type I alpha 2 chain 2 2
MIRT570058 CPNE2 copine 2 2 2
MIRT570305 GOSR1 golgi SNAP receptor complex member 1 2 2
MIRT570723 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 2 2
MIRT570980 RGS19 regulator of G protein signaling 19 2 2
MIRT571194 C9orf62 chromosome 9 open reading frame 62 2 2
MIRT572263 AGO2 argonaute 2, RISC catalytic component 2 2
MIRT573213 NAT10 N-acetyltransferase 10 2 2
MIRT574021 RIMBP3C RIMS binding protein 3C 2 2
MIRT574392 TMEM109 transmembrane protein 109 2 2
MIRT574631 LPCAT3 lysophosphatidylcholine acyltransferase 3 2 2
MIRT574688 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 2 2
MIRT606795 BICD2 BICD cargo adaptor 2 2 2
MIRT613843 SHB SH2 domain containing adaptor protein B 2 2
MIRT621599 USF2 upstream transcription factor 2, c-fos interacting 2 2
MIRT631042 LINC00346 long intergenic non-protein coding RNA 346 2 2
MIRT631301 CBS cystathionine-beta-synthase 2 2
MIRT647748 SAMD9L sterile alpha motif domain containing 9 like 2 2
MIRT649337 HEXA hexosaminidase subunit alpha 2 2
MIRT649992 MSI1 musashi RNA binding protein 1 2 2
MIRT661784 NLRC3 NLR family CARD domain containing 3 2 2
MIRT665990 SYNJ2BP synaptojanin 2 binding protein 2 2
MIRT667175 NR2F6 nuclear receptor subfamily 2 group F member 6 2 4
MIRT667384 MOB1B MOB kinase activator 1B 2 2
MIRT669205 CBX8 chromobox 8 2 2
MIRT680927 EVC EvC ciliary complex subunit 1 2 2
MIRT691868 GXYLT2 glucoside xylosyltransferase 2 2 2
MIRT693256 HBS1L HBS1 like translational GTPase 2 2
MIRT693488 MOB3A MOB kinase activator 3A 2 2
MIRT699479 SLC10A6 solute carrier family 10 member 6 2 2
MIRT717095 PXDC1 PX domain containing 1 2 2
MIRT717120 SOWAHA sosondowah ankyrin repeat domain family member A 2 2
MIRT717641 HLX H2.0 like homeobox 2 2
MIRT722583 THBS2 thrombospondin 2 2 2
MIRT736292 IGF1R insulin like growth factor 1 receptor 3 0
MIRT737162 NOS2 nitric oxide synthase 2 1 0
miRNA-Drug Associations
miRNA Small Melocule FDA CID Detection Method Condition PMID Year Expression Pattern of miRNA
miR-939 Ginsenoside Rh2 NULL 119307 Microarray NSCLC cell line A549 23152132 2013 up-regulated
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-939 Dabrafenib 44462760 NSC764134 approved resistant cell line (A375)
hsa-mir-939 Cisplatin 5460033 NSC119875 approved resistant cell line (BxPC3)
hsa-mir-939 Ceritinib 57379345 NSC776422 approved resistant cell line (H3122)
hsa-miR-939-5p -d-xylose 24203222 NSC727221 sensitive
hsa-miR-939-5p (-)7,8-dihydrocalanolide a 383107 NSC682400 sensitive
hsa-miR-939-5p (10,13-dimethyl-3-oxo-1,2,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-17-yl) 3-methylidene-2-oxo-6-oxabicyclo[3.1.0]hexane-1-carboxylate 495432 NSC654893 sensitive
hsa-miR-939-5p (2E)-2-[2-(4-bromophenyl)-2-oxoethylidene]-5-(2,4-dimethylphenyl)furan-3-one 5468713 NSC674919 sensitive
hsa-miR-939-5p (nz)-n-[1-[4-[(4-imidazol-1-ylquinolin-2-yl)amino]phenyl]ethylidene]hydroxylamine 24204871 NSC733301 sensitive
hsa-miR-939-5p .beta.-phenylethyl 2,4,5-trihydroxycinnamate 5933247 NSC666592 sensitive
hsa-miR-939-5p [(3bR,9aS,11aS)-2-(2-hydroxy-5-oxo-2H-furan-3-yl)-3b,6,6,9a-tetramethyl-2,3,3a,4,5,5a,7,8,9,9b,10,11-dodecahydronaphtho[2,1-e][1]benzofuran-11a-yl]methyl acetate 378635 NSC661428 sensitive
hsa-miR-939-5p [(3S,10R,13S,16E)-16-[[3-methoxy-4-(2-piperidin-1-ylethoxy)phenyl]methylidene]-10,13-dimethyl-17-oxo-2,3,4,7,8,9,11,12,14,15-decahydro-1H-cyclopenta[a]phenanthren-3-yl] acetate 24203176 NSC727082 sensitive
hsa-miR-939-5p [[5-[(4-bromophenyl)diazenyl]-2-hydroxyphenyl]-[2-[3-(2-chloroanilino)-3-oxopropanoyl]hydrazinyl]methyl]phosphonous acid 377940 NSC659608 sensitive
hsa-miR-939-5p [2-amino-9-[3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1H-purin-6-ylidene]sulfanium;(2-hydroxy-5-nitrophenyl)mercury 135403618 NSC321239 sensitive
hsa-miR-939-5p [bis(aminomethyl)diethylsilane]dichloroplatinum (ii) NSC645351 sensitive
hsa-miR-939-5p [dibutyl-(2,6-difluorobenzoyl)oxy-stannyl] 2,6-difluorobenzoate 16683188 NSC643841 sensitive
hsa-miR-939-5p 1-[2-(2,4-dinitrophenyl)sulfonyl-1-methylene-allyl]sulfonyl-2,4-dinitro-benzene 361138 NSC623970 sensitive
hsa-miR-939-5p 1h-benzo[a]carbazole-1,4(11h)-dione, 11-methyl- 261066 NSC92937 sensitive
hsa-miR-939-5p 1h-imidazole-4-carboxamide, 5-(3-methyl-1-tetrazenyl)- 135493930 NSC684047 sensitive
hsa-miR-939-5p 2-(4-methylphenyl)-5-(2-naphthyl)-1,3,4-oxadiazole 260000 NSC90810 sensitive
hsa-miR-939-5p 2-(5-chloro-2-methylanilino)-6-(trifluoromethyl)pyridine-3-carboxamide 24204601 NSC732287 resistant
hsa-miR-939-5p 2-[(3,4-dicloro)anilino]-3-phenyl-5,7-diamino quinoxaline 24203444 NSC728037 sensitive
hsa-miR-939-5p 2-[[(2-aminobenzoyl)oxy-dibutyl-stannyl]amino]benzoic acid 16684416 NSC628572 sensitive
hsa-miR-939-5p 2-[3-chloro-3-(4-chloro-phenyl)-allylidene]-malononitrile 5473313 NSC725048 sensitive
hsa-miR-939-5p 2-acetyl-1,2-dihydroellipticine 376328 NSC657149 resistant
hsa-miR-939-5p 2-methyl-1-(2,3,4,5,6-pentafluorobenzoyl)-1h-benzimidazole 383504 NSC671889 sensitive
hsa-miR-939-5p 2-nitro-1-phenylpropan-1-ol 226118 NSC16258 sensitive
hsa-miR-939-5p 2,5-cyclohexadiene-1,4-dione, 2,3-dimethoxy-5-(2-naphthalenylthio)- 314728 NSC234214 sensitive
hsa-miR-939-5p 3-iodoacetamido-benzoic acid ethyl ester 398530 NSC708445 sensitive
hsa-miR-939-5p 3,4,5-trimethoxy-n-(4h-pyrrolo[2,1-c][1,4]benzoxazin-1-ylmethyl)aniline 403776 NSC719249 sensitive
hsa-miR-939-5p 3,4,8-trimethyl-7-((2-methyl-4-methylene-5-oxotetrahydro-2-furanyl)methoxy)-2h-chromen-2-one 381508 NSC668264 sensitive
hsa-miR-939-5p 4-(6-thioguanine)-7-nitro-2,1,3-benzoxadiazole 3246652 NSC348401 sensitive
hsa-miR-939-5p 4-[(2Z)-2-[1-amino-3-(methylamino)-1,3-bis(sulfanylidene)propan-2-ylidene]hydrazinyl]-1H-imidazole-5-carboxamide 5466293 NSC684046 sensitive
hsa-miR-939-5p 4-[(6-sulfanylidene-3,7-dihydropurin-8-yl)diazenyl]benzenesulfonamide 3246283 NSC75140 sensitive
hsa-miR-939-5p 4-[(z)-indolo[1,2-b]indazol-11-ylidenemethyl]-n,n-dimethylaniline 5472473 NSC719163 sensitive
hsa-miR-939-5p 5,7-bis(dibromomethyl)-3-nitropyrazolo[1,5-a]pyrimidin-2-amine 384486 NSC674312 sensitive
hsa-miR-939-5p 7-benzyl-3-[(e)-3-oxo-3-phenylprop-1-enyl]-16-thia-2,4,5,7-tetrazatetracyclo[7.7.0.02,6.010,15]hexadeca-1(9),3,5,10(15)-tetraen-8-one 45028585 NSC743396 sensitive
hsa-miR-939-5p 7-chloro-10,11-dimethoxy-2,8-diazatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaene-3,4-dione 397794 NSC706232 sensitive
hsa-miR-939-5p 8-(6-fluorohexyl)-3-methyl-1-phenyl-1,3,8-triazaspiro[4.5]decan-4-one;hydrochloride 380336 NSC665863 resistant
hsa-miR-939-5p 8(5h)-quinolinone, 7-chloro-5-[[4-(diethylamino)-2-methylphenyl]imino]- 363174 NSC627778 sensitive
hsa-miR-939-5p Aplidazole c . tfa 362402 NSC626167 sensitive
hsa-miR-939-5p Artelasticin 5471311 NSC710342 sensitive
hsa-miR-939-5p Benzene, 1,1'-[(1,3-butadiene-1,4-diyl)sulfonyl]bis 5468033 NSC662781 sensitive
hsa-miR-939-5p Benzo[1,2-c:4,5-c']dipyrrole-1,3,5,7(2h,6h)-tetraimine 359178 NSC619860 sensitive
hsa-miR-939-5p Carbon monoxide;iridium;1-phenyldiazenylnaphthalen-2-olate 6711627 NSC632877 sensitive
hsa-miR-939-5p Cps49 9905583 NSC726796 sensitive
hsa-miR-939-5p Dacarbazine 5351166 NSC45388 approved sensitive
hsa-miR-939-5p Eh00008 354026 NSC603974 sensitive
hsa-miR-939-5p Gnmlngdfmleynr-uhfffaoysa-n 402862 NSC717147 resistant
hsa-miR-939-5p Herveline o 5459269 NSC676002 sensitive
hsa-miR-939-5p Incarnal 131851 NSC648322 sensitive
hsa-miR-939-5p Leinamycin 5459203 NSC645777 sensitive
hsa-miR-939-5p M-232 403374 NSC718170 sensitive
hsa-miR-939-5p Melampodinin 5359028 NSC294600 sensitive
hsa-miR-939-5p Methyl (1S,4S)-6,11-dioxo-4-[3,4,5-triacetyloxy-6-(acetyloxymethyl)oxan-2-yl]oxy-1,4-dihydropyridazino[1,2-b]phthalazine-1-carboxylate 385569 NSC676858 sensitive
hsa-miR-939-5p Mp 317 16683647 NSC30916 sensitive
hsa-miR-939-5p N-(((2-methoxy-5-(trifluoromethyl)anilino)carbonyl)oxy)butanimidoyl chloride 9556202 NSC672059 sensitive
hsa-miR-939-5p N-(2-aminophenyl)-4-[3-(3-methyl-2,5-dioxoimidazolidin-1-yl)prop-1-en-2-yl]benzamide 11682081 NSC736099 sensitive
hsa-miR-939-5p Niveusin a 5477575 NSC331121 sensitive
hsa-miR-939-5p NSC621339 NSC621339 sensitive
hsa-miR-939-5p Pc 287 239486 NSC44580 sensitive
hsa-miR-939-5p Phenethyl 3-(3,4-dihydroxyphenyl)propanoate 380847 NSC666586 sensitive
hsa-miR-939-5p Prumycin 5458561 NSC278619 resistant
hsa-miR-939-5p Stk673848 403091 NSC717563 resistant
hsa-miR-939-5p Tamoxifen 2733525 NSC180973 approved sensitive High Breast Cancer cell line (MCF-7, LY2)
hsa-miR-939-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HCT-116)
hsa-miR-939-5p Gemcitabine 60750 NSC613327 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-939-5p Fluorouracil 3385 NSC19893 approved sensitive High Pancreatic Cancer cell line (PANC-1)
hsa-miR-939-5p Bortezomib 387447 NSC681239 approved resistant High Multiple Myeloma cell line
hsa-miR-939-5p Imatinib 5291 NSC743414 approved sensitive High Gastrointestinal Stromal Tumor tissue
hsa-miR-939-5p Platinum 23939 sensitive High Ovarian Cancer tissue
hsa-miR-939-5p Capecitabine + Oxaliplatin resistant High Colon Adenocarcinoma tissue
hsa-miR-939-5p Fluorouracil 3385 NSC19893 approved sensitive Low Gastric Cancer cell line (AGS, BGC-823, HGC-27, MGC-803, MNK-45, SGC-7901)
hsa-miR-939-5p Oxaliplatin 6857599 NSC266046 approved resistant High Colorectal Cancer cell line (HCT-116, HT-29)
hsa-miR-939-5p Tamoxifen 2733525 NSC180973 approved resistant High Breast Cancer cell line (MCF-7)
hsa-miR-939-5p Paclitaxel 36314 NSC125973 approved sensitive High Endometrial Serous Carcinoma cell line (USPC1)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved resistant High Hypopharyngeal Cancer cell line (FaDu)
hsa-miR-939-5p Temozolomide 5394 NSC362856 approved resistant cell line (U251)
hsa-miR-939-5p Gefitinib 123631 NSC715055 approved resistant cell line (HCC827)
hsa-miR-939-5p Osimertinib 71496458 NSC779217 approved resistant cell line (HCC827)
hsa-miR-939-5p Gefitinib 123631 NSC715055 approved sensitive cell line (HCC827)
hsa-miR-939-5p Osimertinib 71496458 NSC779217 approved sensitive cell line (H1975)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (MGC-803)
hsa-miR-939-5p 4-Hydroxytamoxifen+Tamoxifen resistant cell line (LY2)
hsa-miR-939-5p Ethanol+Tamoxifen resistant cell line (LY2)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved resistant cell line (RPMI2650)
hsa-miR-939-5p Sunitinib 5329102 NSC750690 approved resistant tissue (CardB)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-939-5p Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved sensitive cell line (OVCAR3)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved resistant cell line (H23)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-939-5p Cisplatin 5460033 NSC119875 approved resistant cell line (OVSAHO)

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