miRTarBase - #MIRT446248


—
pre-miRNA Information
pre-miRNA hsa-mir-3915   
Genomic Coordinates chrX: 32583656 - 32583752
Description Homo sapiens miR-3915 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3915
Sequence 21| UUGAGGAAAAGAUGGUCUUAUU |42
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs997323565 10 dbSNP
rs1192161547 15 dbSNP
rs1255075246 19 dbSNP
rs1452812574 20 dbSNP
Putative Targets

miRNA Expression profile
Human miRNA Tissue Atlas
Circulating MicroRNA Expression Profiling
Gene Information
Gene Symbol ELP2   
Synonyms MRT58, SHINC-2, STATIP1, StIP
Description elongator acetyltransferase complex subunit 2
Transcript NM_018255   
Expression
Putative miRNA Targets on ELP2
3'UTR of ELP2
(miRNA target sites are highlighted)		 
>ELP2|NM_018255|3'UTR
   1 TGGACTTAATAACTACATGCTTGCAGTCACTGGTATCTTAAAATATTATCATGTAAACAGGTCATCTTTACCTTCATAAC
  81 TGAATTGAGTTTCTGGGTTTTTTTTTTTTTTGAGATGGAGTCTTGCTTTGTCACAACCTCCACCTCCCAGGTTCAAGCGA
 161 TTCTCTTTCTTCAGCCTCCTGAGTAGCTGGGACTAGAGGCACACCACCAATTCCGGCTAATTTTTGTATTTTTAGTAGAG
 241 ACTGGGTTTCACCGTTGGCCAGGCGGGTCTCAAACTCCTCGTCTCAGGTGATCTGCTTGCCTCGGCCTCCCAAAGTGCTG
 321 GGATTACAGGCGTGAGCCACTGCGCCCAGCCTGAGTTTCATTTTTTAAGTCACATAGCAGTAGTCCTTATTTCAGTGCTA
 401 GACCCTTTGAAATGCGATGAAAGCTATATGGACCCTTCGCTTTGTTATATAACATATGCACACATACCCAGAATTTTGCA
 481 CATATGTTCAGAGATTCCTAGACCTGCAGACCTGCCTCTGTGTGTCCCAATTTAAGAACCTCTGTTCTTTCTTCATGACT
 561 GGATTTGCCCAATTTTGTGTTATTTTGGGACTTAATTTGTCCCTCTTTGGGACATTTCCTTATTTATTGCCCTCTTCAGA
 641 GAGTAGATGTAGAAAATAAAGAGAGGAAACCTAGATTACTTAATTTTATTTTAACATTTTCTATAGATAGCATACCACGC
 721 CAAGTGTGCTCTGTCTTGATCCCCTTCTTTCTAGCATCTGCCAGACATTGTAGAGTTTCGCAAGCAGTTGTAGGTTTGAG
 801 CTGCAGCCAGTCATTTCTTTTATTCTTTAAAAGTACATAGATTTGTCTTTTTAGGGCTTTACTGAAAGTAAAATATCCTG
 881 ACATTTAAACTGACAGATGTAGGAGGTAAAAAATAGAGTTCTGAAACATTTGAATTTATGTGACAGCTGAAGTCACGAGA
 961 TGAGGGATATATGTCCCCCAGGGAGGATGCAGAAAGAAGAAAAGGGTACTGGAAACAGCATGTCAGTGGTGCCAGCTGAG
1041 GGCTGGAGGCAGCCAGGAGAGTTGGGAGCCTGGGTGCTGGGTGGAGAGAGGTTAACAGGGAAGACATGGGAAGTATTGTG
1121 AAGGCTGGTGTGAGCAGGGGACTACTCCAGCCCTGTTGGAACATAGAGCCATTTGGCAGATTGACAATGCAGTGACAGCT
1201 GTATATAATAAATGTGTTGAAAGGAGGAAGGTGAGGATTTTCTTGGTGGGAGTTTATGCTGTTATTTAACATATTTTGCT
1281 TCCAAAGGGGTTAAGATGTTTTACCTAAATGGAGGTTTCTAGGTCAGTGCTATACAATATTTCTAATCTGTGTTTTATAG
1361 TGTGAGCTACATATGTAATTTTAAAATTTTCAAGTAGCCACATAATAAAGGAAACAGGTGAAATTTAATGACATATTTCC
1441 TTTAATACGGTATATCCAAAATATTATTATGTCAACCTATAATCAGTATAAAAACCTGTTACTGAAATATTTTATAGGGC
1521 CCATCTCAGTTCAGACTAGCCACATTTAAGTGCTTCATAGCCACATGTGGCTCATGGCCATCCATATTTGGACAATGTAC
1601 TTTAGACTATTGCATCTGTATACTCTTGTGCCGTCAGCTGGGGGGTGGGGTGTGTGTGCGTGTATACCAAGGCAGTGAGC
1681 ATCTGAGCTTTGAACCTCAAAGACCAAAATGCCCTGCCCATTTTCCTGCTTATCAGCTGAGGAATCTTTACCCACATTGA
1761 CACATGGGCTTGTTCTGACCCAAGTGCATGCAGGCTTCCAGAGCAGATTCAGAGGCCTAACTTAGTCCTTTAGCTTTCCT
1841 CCCAGCACAGAACTCCCAAGGTTATCTGCAAGTAGGCCTTGCCTAGAGAGACTGAGTTTTCAAGTTGTCAGTTTTCCCAA
1921 ATTGTCCTCAAGCATCTTCCTCTGGAATCACCTTACTGTTTAGTAAACATTCAGAGGACTTGCTACACATCTGGGCAGTC
2001 TGCATTGTAATTCATATGTGTTTACACATTTGTGTCTTCATCTGCTAAAGCACCTTTGAACCATATTGTAATTCATAATA
2081 TCTGAAGCAATTATTATGAATTGTAGTAATTCATAATATTGAAGCGATTCATAATATCTGAAGCAATCCCCAGATACGGG
2161 TTAGGCATGGCCCTGCTCTGAGCAGGATGGCAAAAGTGGCAGTCCGTGACGCAGCCCTTGTTACCCCAGGCTATTACTAA
2241 ATGGTGGTGGTGGTTTTATCTTAATTAAAATGACATCACCAACAATGGGCCCTTTCCTGTCTGCCAGGAAAAGTTTTCTG
2321 TAGTGACGCACGTGTTGTGTGTGTATGTGTGCGTTTGAGGCTATATTACTCATTGCTACGGCAGTTCAAAATGACTTGGA
2401 AAAAAACAATGAACGCTGGTCATTGATATGTATACTGACATGTTTGAGGGAAGTTACTGTGGTCTGTAACTTATGAAATA
2481 CATAAAAAATATGATGGGTGGAGTGACGGACACATGGACAGATATGAAGCAAGCACTGTAAAATATTAGTGGTAGTTTTT
2561 GTATGCCCATACTCACGGCACCATTATTCACAGTAGCTAAGAGATGGAAGCAATATGTGCCCATCAGTGGGTGAATGATC
2641 AACAAAATGTGGTATATTCATACAGTGGAATATTATTCAGCCTCTAAAAGGAAGATACGCTGACATGTGCTGCAACATGG
2721 ATGAATCTTGAGGACATGATGCTAAGTGAAGTAAGCCAGTCACTGGAAGACAAATACTCTATGCTTCCATTTATGTGAAG
2801 TATCTAGAGCAGTCAAATGCATAGAAACAAGTAGAATGGTAGTTGCCAAGGACTGGGGGAGGAGGAAATGAGGAGTTGTT
2881 TAATGGGTATAGTGTTTCAGTTTTGCAAGATAAAAAGTCCTGTGGATTGGTTGCACAGTTAAGTTATGTGAATGCTGTAT
2961 GCCAACTCAACTGTACACTCTAAAATGGTTAAGATGGTAAATCTTATCTTTATTTTACCACAGTTTTTTTTAAAGCATGG
3041 TAAACACCATTTCCCAGGATGTAAATCGGTACTAAAAAAAAAGTGCTCCAAAGTAAGATATATTTGGGAAACACAGGGAT
3121 AACTAAGGTTAGATAGGTGTTCTTTATTGCAGGAATTCTAAGAGCATTTAACAAATTAATTTACACTGGGAATTTTCAGT
3201 GTGGAGGGTCTGGCTCATAGCATTTCACAAACATTATACTTCAGAGTCCCAAAGCCTTTAAATAAAATGTTAATGGTAGA
3281 A
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' uuAUUCUGGUAGA----AAAGGAGUu 5'
            ||||| | |||    ||||:||| 
Target 5' ttTAAGAACCTCTGTTCTTTCTTCAt 3'
 531 - 556 154.00 -11.80
2 
miRNA  3' uuaUUCUGGU-AGA-AAAGGAGUu 5'
             ||| | | ||| ||||:||| 
Target 5' ttcAAG-CGATTCTCTTTCTTCAg 3'
 152 - 174 142.00 -9.80
3 
miRNA  3' uuAUUCUGGUAGAAAAGGAGUu 5'
            |::|| ||   ||||||:| 
Target 5' ttTGGGA-CA---TTTCCTTAt 3'
 606 - 623 136.00 -9.80
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSN30131740 3 COSMIC
COSN15664150 13 COSMIC
COSN19771601 33 COSMIC
COSN1738976 49 COSMIC
COSN27552785 112 COSMIC
COSN5425060 786 COSMIC
COSN19536974 874 COSMIC
COSN23048575 1141 COSMIC
COSN9837346 1204 COSMIC
COSN26785043 1379 COSMIC
COSN1738977 1455 COSMIC
COSN1205348 1594 COSMIC
COSN21202685 1893 COSMIC
COSN9837347 2340 COSMIC
COSN27074400 2541 COSMIC
COSN5845089 2660 COSMIC
COSN29411230 2909 COSMIC
COSN22636659 3309 COSMIC
COSN20636872 3495 COSMIC
COSN22780056 3619 COSMIC
COSN17660905 4000 COSMIC
COSN18922967 4000 COSMIC
COSN27593762 4102 COSMIC
COSN1738978 4407 COSMIC
COSN7356849 4794 COSMIC
COSN25491667 4920 COSMIC
COSN24331759 4939 COSMIC
COSN14437964 5009 COSMIC
COSN8678276 5326 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs762558442 3 dbSNP
rs1355439221 6 dbSNP
rs1219726020 10 dbSNP
rs75736987 13 dbSNP
rs369702233 17 dbSNP
rs748550726 18 dbSNP
rs772555903 19 dbSNP
rs773724464 26 dbSNP
rs746449642 33 dbSNP
rs371642288 36 dbSNP
rs1422986675 40 dbSNP
rs1426425238 44 dbSNP
rs918514337 45 dbSNP
rs776102281 47 dbSNP
rs762970986 48 dbSNP
rs759209466 49 dbSNP
rs764841112 50 dbSNP
rs775424186 53 dbSNP
rs762895697 59 dbSNP
rs374714243 62 dbSNP
rs1309732006 77 dbSNP
rs1378751214 81 dbSNP
rs764063900 85 dbSNP
rs1045604662 89 dbSNP
rs1356588843 93 dbSNP
rs1211156528 94 dbSNP
rs756219570 95 dbSNP
rs1238801436 96 dbSNP
rs367806683 98 dbSNP
rs751743005 98 dbSNP
rs767988102 98 dbSNP
rs1457727990 99 dbSNP
rs1179742562 101 dbSNP
rs937055752 101 dbSNP
rs766501990 102 dbSNP
rs1443241358 106 dbSNP
rs1187265898 108 dbSNP
rs1186168390 112 dbSNP
rs1369318773 112 dbSNP
rs75501328 113 dbSNP
rs1475945910 114 dbSNP
rs1156501685 115 dbSNP
rs753914141 119 dbSNP
rs1166254011 121 dbSNP
rs1399569390 123 dbSNP
rs1457544754 125 dbSNP
rs1465043536 129 dbSNP
rs755194728 131 dbSNP
rs1447111648 135 dbSNP
rs187196527 139 dbSNP
rs1257148002 144 dbSNP
rs1460987554 146 dbSNP
rs1359236554 154 dbSNP
rs1178944449 159 dbSNP
rs892784667 160 dbSNP
rs1394897973 162 dbSNP
rs1179610195 174 dbSNP
rs1009912077 195 dbSNP
rs1483111530 208 dbSNP
rs1491533417 209 dbSNP
rs35262907 209 dbSNP
rs775096667 209 dbSNP
rs200460851 210 dbSNP
rs70941623 210 dbSNP
rs747523368 210 dbSNP
rs879399653 210 dbSNP
rs62103115 211 dbSNP
rs35012892 212 dbSNP
rs62103117 213 dbSNP
rs776299652 213 dbSNP
rs1302449241 214 dbSNP
rs1240537472 215 dbSNP
rs35637316 215 dbSNP
rs1020915379 216 dbSNP
rs902119972 227 dbSNP
rs1390452411 251 dbSNP
rs1379329436 252 dbSNP
rs1304051662 253 dbSNP
rs777786974 254 dbSNP
rs967725679 255 dbSNP
rs1159641848 259 dbSNP
rs980508779 264 dbSNP
rs926375098 265 dbSNP
rs939149613 266 dbSNP
rs953588215 267 dbSNP
rs1181429530 270 dbSNP
rs1424590028 275 dbSNP
rs751565286 281 dbSNP
rs1006711886 282 dbSNP
rs1482246251 284 dbSNP
rs1359928745 290 dbSNP
rs1057483081 291 dbSNP
rs1217245710 304 dbSNP
rs1355666737 305 dbSNP
rs917438739 308 dbSNP
rs930199740 312 dbSNP
rs1047320473 313 dbSNP
rs888407469 328 dbSNP
rs113317136 332 dbSNP
rs754798672 333 dbSNP
rs1039739875 344 dbSNP
rs1355390921 345 dbSNP
rs1299412981 350 dbSNP
rs1402383501 365 dbSNP
rs1288521461 372 dbSNP
rs899910995 384 dbSNP
rs527538675 387 dbSNP
rs1216874906 390 dbSNP
rs547446617 391 dbSNP
rs1029486324 404 dbSNP
rs918479177 409 dbSNP
rs956541135 416 dbSNP
rs1009466769 429 dbSNP
rs1194366667 430 dbSNP
rs1022225704 439 dbSNP
rs7244598 440 dbSNP
rs539534255 448 dbSNP
rs747214517 450 dbSNP
rs1266779498 454 dbSNP
rs767389401 457 dbSNP
rs926350102 458 dbSNP
rs1381935136 459 dbSNP
rs1339034145 460 dbSNP
rs1318096035 465 dbSNP
rs914328318 468 dbSNP
rs1393149859 469 dbSNP
rs754005114 475 dbSNP
rs1461099702 479 dbSNP
rs945677664 480 dbSNP
rs1172860663 482 dbSNP
rs991950781 485 dbSNP
rs556165758 492 dbSNP
rs561572533 495 dbSNP
rs1041394483 500 dbSNP
rs917391328 502 dbSNP
rs930147427 507 dbSNP
rs1192210258 513 dbSNP
rs1452036940 525 dbSNP
rs1269184834 526 dbSNP
rs1438907244 529 dbSNP
rs1211491065 531 dbSNP
rs1467727871 537 dbSNP
rs1294132540 541 dbSNP
rs901543890 549 dbSNP
rs1316605070 558 dbSNP
rs982960136 560 dbSNP
rs1270056523 571 dbSNP
rs1439340100 573 dbSNP
rs143620137 578 dbSNP
rs1050671225 580 dbSNP
rs889250083 584 dbSNP
rs941658469 585 dbSNP
rs1223623697 592 dbSNP
rs559131367 594 dbSNP
rs556139122 596 dbSNP
rs1282639450 598 dbSNP
rs1006393316 613 dbSNP
rs1314716751 634 dbSNP
rs1016739206 640 dbSNP
rs572600519 642 dbSNP
rs962165993 644 dbSNP
rs899857759 650 dbSNP
rs994018089 658 dbSNP
rs771124868 683 dbSNP
rs35906276 684 dbSNP
rs397777680 684 dbSNP
rs1238342767 685 dbSNP
rs1199986586 696 dbSNP
rs1024962162 704 dbSNP
rs1271658857 708 dbSNP
rs1201572885 709 dbSNP
rs934042718 710 dbSNP
rs1051201304 713 dbSNP
rs1176361811 719 dbSNP
rs779014736 720 dbSNP
rs1233950990 721 dbSNP
rs1377934569 727 dbSNP
rs1405534583 732 dbSNP
rs1444824681 736 dbSNP
rs1407225312 752 dbSNP
rs1009412877 754 dbSNP
rs1415002747 756 dbSNP
rs867453341 757 dbSNP
rs1022173099 762 dbSNP
rs1393808614 763 dbSNP
rs1171536290 770 dbSNP
rs981348144 772 dbSNP
rs1380676302 773 dbSNP
rs1459982985 776 dbSNP
rs534937060 780 dbSNP
rs745890911 781 dbSNP
rs927202514 787 dbSNP
rs958744177 791 dbSNP
rs1354947992 795 dbSNP
rs990015775 811 dbSNP
rs1222320162 818 dbSNP
rs1350173852 823 dbSNP
rs1284877780 827 dbSNP
rs1450223507 829 dbSNP
rs1033751151 837 dbSNP
rs945801417 842 dbSNP
rs1041879004 851 dbSNP
rs758500463 856 dbSNP
rs1229674181 857 dbSNP
rs991830458 858 dbSNP
rs1406718735 862 dbSNP
rs1163335943 865 dbSNP
rs932997129 876 dbSNP
rs1254759957 879 dbSNP
rs1333488568 880 dbSNP
rs1026027613 883 dbSNP
rs1488884965 886 dbSNP
rs889385432 898 dbSNP
rs1214028932 901 dbSNP
rs950503501 905 dbSNP
rs1458111726 909 dbSNP
rs1230231046 927 dbSNP
rs1058283 931 dbSNP
rs1230956015 935 dbSNP
rs780486885 936 dbSNP
rs1232637994 938 dbSNP
rs1341001447 945 dbSNP
rs1037861279 953 dbSNP
rs190745037 957 dbSNP
rs1344383171 958 dbSNP
rs1406720121 966 dbSNP
rs654376 970 dbSNP
rs768977282 972 dbSNP
rs1163530241 973 dbSNP
rs1417469011 973 dbSNP
rs150575011 974 dbSNP
rs1474369648 975 dbSNP
rs921243028 976 dbSNP
rs1172849481 979 dbSNP
rs1426337950 981 dbSNP
rs934012765 988 dbSNP
rs906498528 994 dbSNP
rs1051148810 996 dbSNP
rs892547364 998 dbSNP
rs1467281171 1001 dbSNP
rs1272654964 1004 dbSNP
rs945483732 1006 dbSNP
rs1318524798 1010 dbSNP
rs1297720467 1019 dbSNP
rs1327515535 1023 dbSNP
rs1361075448 1027 dbSNP
rs777118688 1037 dbSNP
rs958661288 1058 dbSNP
rs1449277992 1063 dbSNP
rs1391766226 1069 dbSNP
rs1324649978 1087 dbSNP
rs903713430 1102 dbSNP
rs1354375884 1124 dbSNP
rs1169022842 1125 dbSNP
rs1002502147 1127 dbSNP
rs1231086846 1129 dbSNP
rs1428416248 1132 dbSNP
rs1033603573 1133 dbSNP
rs896106236 1137 dbSNP
rs1279465792 1139 dbSNP
rs1339562815 1143 dbSNP
rs1193238455 1146 dbSNP
rs563297063 1148 dbSNP
rs747741133 1153 dbSNP
rs977108873 1154 dbSNP
rs573708232 1157 dbSNP
rs1459191468 1164 dbSNP
rs1249667028 1172 dbSNP
rs923028469 1182 dbSNP
rs769423459 1183 dbSNP
rs1279091129 1184 dbSNP
rs541718150 1187 dbSNP
rs984532077 1189 dbSNP
rs1443894665 1190 dbSNP
rs1374940241 1193 dbSNP
rs1295912938 1201 dbSNP
rs575279991 1202 dbSNP
rs962931472 1209 dbSNP
rs527464436 1212 dbSNP
rs772772895 1214 dbSNP
rs1484782201 1215 dbSNP
rs976033612 1219 dbSNP
rs985774234 1227 dbSNP
rs1394844742 1231 dbSNP
rs1159530353 1232 dbSNP
rs1421074062 1233 dbSNP
rs1248551685 1242 dbSNP
rs1196125183 1247 dbSNP
rs1424425272 1250 dbSNP
rs921537352 1257 dbSNP
rs910240452 1259 dbSNP
rs762504882 1260 dbSNP
rs766036440 1262 dbSNP
rs547240134 1272 dbSNP
rs1240470506 1275 dbSNP
rs627051 1278 dbSNP
rs897985440 1280 dbSNP
rs1415568572 1286 dbSNP
rs1390247002 1289 dbSNP
rs929472443 1300 dbSNP
rs774403736 1302 dbSNP
rs1043847735 1315 dbSNP
rs906633003 1316 dbSNP
rs1412531735 1322 dbSNP
rs1375264484 1323 dbSNP
rs1002175220 1335 dbSNP
rs1455562081 1336 dbSNP
rs925068404 1338 dbSNP
rs893820692 1349 dbSNP
rs1326479486 1359 dbSNP
rs1011487387 1362 dbSNP
rs1190036647 1363 dbSNP
rs1484630127 1373 dbSNP
rs1021971822 1383 dbSNP
rs937867562 1387 dbSNP
rs1486646916 1392 dbSNP
rs1258662816 1397 dbSNP
rs1237866441 1398 dbSNP
rs967200749 1407 dbSNP
rs1055401322 1420 dbSNP
rs977244678 1421 dbSNP
rs1267935796 1433 dbSNP
rs896400703 1434 dbSNP
rs73946782 1449 dbSNP
rs1047371767 1450 dbSNP
rs532840028 1451 dbSNP
rs1288570102 1453 dbSNP
rs910216529 1462 dbSNP
rs985866931 1462 dbSNP
rs1262755463 1467 dbSNP
rs1162829145 1471 dbSNP
rs1474197095 1473 dbSNP
rs886116646 1477 dbSNP
rs1191052476 1487 dbSNP
rs1005900524 1488 dbSNP
rs1430146389 1495 dbSNP
rs1259372929 1497 dbSNP
rs1016019563 1499 dbSNP
rs1274532646 1501 dbSNP
rs1468614187 1501 dbSNP
rs1248541504 1506 dbSNP
rs973646236 1508 dbSNP
rs1334769402 1510 dbSNP
rs1478603844 1515 dbSNP
rs1230239796 1516 dbSNP
rs1325094583 1520 dbSNP
rs1295267111 1530 dbSNP
rs919505230 1538 dbSNP
rs1396900753 1541 dbSNP
rs963171797 1543 dbSNP
rs997018214 1549 dbSNP
rs1401107875 1558 dbSNP
rs1168473592 1560 dbSNP
rs759617796 1570 dbSNP
rs549908613 1575 dbSNP
rs906726239 1579 dbSNP
rs1028951037 1580 dbSNP
rs1454458998 1585 dbSNP
rs1254415457 1611 dbSNP
rs1191353009 1612 dbSNP
rs543894174 1614 dbSNP
rs955591169 1623 dbSNP
rs551065874 1624 dbSNP
rs1198121650 1627 dbSNP
rs1055655559 1633 dbSNP
rs535492985 1634 dbSNP
rs1011329583 1640 dbSNP
rs1385170501 1640 dbSNP
rs913875069 1642 dbSNP
rs1042957344 1643 dbSNP
rs570685066 1650 dbSNP
rs998758401 1651 dbSNP
rs1030104844 1652 dbSNP
rs979891106 1653 dbSNP
rs1332326454 1659 dbSNP
rs1396643589 1660 dbSNP
rs78720140 1661 dbSNP
rs1017778749 1679 dbSNP
rs1183284655 1689 dbSNP
rs566279992 1697 dbSNP
rs963037837 1703 dbSNP
rs1054946992 1706 dbSNP
rs917777120 1715 dbSNP
rs949274130 1717 dbSNP
rs535344541 1719 dbSNP
rs558042394 1720 dbSNP
rs752481825 1721 dbSNP
rs1047654355 1735 dbSNP
rs1292106121 1743 dbSNP
rs1281366076 1750 dbSNP
rs1440031588 1757 dbSNP
rs867596341 1758 dbSNP
rs950930329 1765 dbSNP
rs531803765 1766 dbSNP
rs1377080924 1773 dbSNP
rs755863956 1782 dbSNP
rs578127208 1783 dbSNP
rs765456978 1787 dbSNP
rs1005852921 1789 dbSNP
rs938192833 1793 dbSNP
rs537108232 1805 dbSNP
rs1055178961 1806 dbSNP
rs1189322287 1809 dbSNP
rs1486917626 1813 dbSNP
rs763728612 1817 dbSNP
rs915332544 1820 dbSNP
rs1210545151 1823 dbSNP
rs1447806467 1826 dbSNP
rs1286696516 1841 dbSNP
rs1222264910 1842 dbSNP
rs946711512 1845 dbSNP
rs1042770801 1862 dbSNP
rs3833186 1869 dbSNP
rs1442116208 1887 dbSNP
rs149999674 1897 dbSNP
rs1446931461 1902 dbSNP
rs573675712 1904 dbSNP
rs1319938443 1912 dbSNP
rs890253225 1921 dbSNP
rs1383658582 1930 dbSNP
rs1452524074 1932 dbSNP
rs1476483113 1933 dbSNP
rs1416247231 1940 dbSNP
rs568718290 1941 dbSNP
rs1475977412 1946 dbSNP
rs542645876 1950 dbSNP
rs996353741 1951 dbSNP
rs1007349173 1962 dbSNP
rs9959806 1965 dbSNP
rs891312652 1969 dbSNP
rs1008460822 1975 dbSNP
rs1273913973 1985 dbSNP
rs1021224408 1987 dbSNP
rs1336859472 1988 dbSNP
rs1291433431 1992 dbSNP
rs1227653390 2004 dbSNP
rs966985577 2005 dbSNP
rs1271675198 2008 dbSNP
rs1325103313 2015 dbSNP
rs1026380231 2018 dbSNP
rs1326008058 2024 dbSNP
rs979452894 2048 dbSNP
rs982350981 2064 dbSNP
rs1164888701 2081 dbSNP
rs1032780489 2088 dbSNP
rs145790666 2090 dbSNP
rs959469830 2094 dbSNP
rs1237135828 2095 dbSNP
rs991323735 2102 dbSNP
rs917723421 2105 dbSNP
rs1286222077 2114 dbSNP
rs1335512953 2117 dbSNP
rs1213101227 2119 dbSNP
rs866299710 2126 dbSNP
rs572217818 2127 dbSNP
rs1195725917 2132 dbSNP
rs1459439725 2135 dbSNP
rs1196894634 2136 dbSNP
rs983300209 2138 dbSNP
rs907791896 2144 dbSNP
rs1417767540 2149 dbSNP
rs1307956516 2152 dbSNP
rs541318807 2155 dbSNP
rs1274878308 2156 dbSNP
rs66505585 2158 dbSNP
rs1341194810 2159 dbSNP
rs1419628201 2160 dbSNP
rs977311852 2166 dbSNP
rs1475348918 2174 dbSNP
rs1037353820 2176 dbSNP
rs554129330 2190 dbSNP
rs373452733 2200 dbSNP
rs1292392062 2204 dbSNP
rs182946343 2206 dbSNP
rs1051591148 2207 dbSNP
rs1429588850 2209 dbSNP
rs879683017 2211 dbSNP
rs549902290 2212 dbSNP
rs755535978 2213 dbSNP
rs1252477223 2228 dbSNP
rs1177797652 2230 dbSNP
rs1039265114 2231 dbSNP
rs1234602055 2234 dbSNP
rs1335965091 2247 dbSNP
rs1202342692 2248 dbSNP
rs1482636404 2266 dbSNP
rs1280739031 2270 dbSNP
rs1236079703 2271 dbSNP
rs891261265 2276 dbSNP
rs1356277613 2282 dbSNP
rs1008391997 2283 dbSNP
rs1300003767 2287 dbSNP
rs1232918322 2296 dbSNP
rs1223789645 2298 dbSNP
rs899020411 2299 dbSNP
rs563403101 2300 dbSNP
rs1297020373 2305 dbSNP
rs994991214 2312 dbSNP
rs1376478292 2313 dbSNP
rs1315120358 2314 dbSNP
rs781562200 2316 dbSNP
rs565948238 2317 dbSNP
rs902748376 2318 dbSNP
rs1160104519 2321 dbSNP
rs1421020362 2321 dbSNP
rs1001552943 2328 dbSNP
rs1439632334 2329 dbSNP
rs539893320 2332 dbSNP
rs1257989619 2333 dbSNP
rs1212678372 2336 dbSNP
rs1479846048 2339 dbSNP
rs1003230904 2340 dbSNP
rs528881547 2341 dbSNP
rs1035244231 2344 dbSNP
rs959599971 2348 dbSNP
rs1304185103 2353 dbSNP
rs991113190 2354 dbSNP
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rs1355548740 5324 dbSNP
rs1048095800 5328 dbSNP
rs761548952 5330 dbSNP
rs138553541 5331 dbSNP
rs769628302 5335 dbSNP
rs1039207860 5337 dbSNP
rs1197551790 5339 dbSNP
rs567797554 5339 dbSNP
rs970609147 5339 dbSNP
rs1416050091 5349 dbSNP
rs1001725833 5350 dbSNP
rs1479686262 5355 dbSNP
rs1378279472 5360 dbSNP
rs1226556134 5363 dbSNP
rs1226599377 5365 dbSNP
rs368815159 5365 dbSNP
rs546618192 5367 dbSNP
rs77811605 5372 dbSNP
rs957434250 5373 dbSNP
rs1342665611 5377 dbSNP
rs988895899 5384 dbSNP
rs997727729 5386 dbSNP
rs1298126930 5390 dbSNP
rs1470555601 5394 dbSNP
rs1272704930 5397 dbSNP
rs1174809885 5398 dbSNP
rs1480307270 5401 dbSNP
rs1053787223 5403 dbSNP
rs1364648973 5405 dbSNP
rs892081359 5408 dbSNP
rs1184212856 5410 dbSNP
rs1417441760 5413 dbSNP
rs1486789092 5414 dbSNP
rs1011988533 5415 dbSNP
rs922562310 5420 dbSNP
rs1021648648 5428 dbSNP
rs538482441 5430 dbSNP
rs1264909447 5438 dbSNP
rs1049564898 5442 dbSNP
rs1001585367 5448 dbSNP
rs558213640 5451 dbSNP
rs1240680471 5452 dbSNP
rs138201763 5453 dbSNP
rs1305589225 5467 dbSNP
rs759745035 5471 dbSNP
rs1036814786 5474 dbSNP
rs1469646795 5475 dbSNP
rs972644506 5477 dbSNP
rs918494846 5484 dbSNP
rs537573833 5485 dbSNP
rs767626079 5492 dbSNP
rs1033138961 5498 dbSNP
rs1446493866 5500 dbSNP
rs1436216271 5502 dbSNP
rs926873962 5506 dbSNP
rs1244933323 5507 dbSNP
rs1181631904 5511 dbSNP
rs957569377 5512 dbSNP
rs1284622557 5523 dbSNP
rs984174377 5531 dbSNP
rs1348179662 5534 dbSNP
rs554100226 5535 dbSNP
rs1358127948 5536 dbSNP
rs1384327373 5546 dbSNP
rs13425 5547 dbSNP
rs965992460 5551 dbSNP
rs61738606 5558 dbSNP
rs143684050 5559 dbSNP
rs953969117 5562 dbSNP
rs1384582621 5572 dbSNP
rs577348115 5582 dbSNP
rs1426655591 5584 dbSNP
rs1383405472 5585 dbSNP
rs1161609365 5587 dbSNP
rs1472387633 5589 dbSNP
rs14045 5591 dbSNP
rs1195131906 5596 dbSNP
rs1445044876 5600 dbSNP
rs61746774 5602 dbSNP
rs1036760503 5619 dbSNP
rs1361007450 5624 dbSNP
rs757672417 5625 dbSNP
rs1288892431 5627 dbSNP
rs1228260067 5634 dbSNP
rs1011860211 5642 dbSNP
rs1277988155 5644 dbSNP
rs1043007447 5645 dbSNP
rs1406932226 5647 dbSNP
rs1218523211 5648 dbSNP
rs181983628 5655 dbSNP
rs542352294 5657 dbSNP
rs949868192 5666 dbSNP
rs1420202028 5667 dbSNP
rs112237291 5672 dbSNP
rs1474321983 5680 dbSNP
rs1035745566 5683 dbSNP
rs1199718750 5691 dbSNP
rs960149092 5705 dbSNP
rs559466960 5706 dbSNP
rs750082974 5707 dbSNP
rs1172847945 5716 dbSNP
rs1275755290 5719 dbSNP
rs1423814062 5720 dbSNP
rs1412222064 5721 dbSNP
rs1284252726 5722 dbSNP
rs1225729298 5726 dbSNP
rs1343933210 5729 dbSNP
rs1319742232 5732 dbSNP
rs937602578 5734 dbSNP
rs1389212890 5740 dbSNP
rs1356315337 5744 dbSNP
rs148238139 5751 dbSNP
rs1399285593 5765 dbSNP
rs1463950395 5765 dbSNP
rs1434284964 5766 dbSNP
rs1318288703 5768 dbSNP
rs1481289490 5770 dbSNP
rs1426814904 5773 dbSNP
rs1190229266 5774 dbSNP
rs1372991466 5781 dbSNP
rs1234211279 5786 dbSNP
rs1054644849 5787 dbSNP
rs758043142 5792 dbSNP
rs1457761338 5795 dbSNP
rs1333970548 5808 dbSNP
rs1206022506 5811 dbSNP
rs1343181346 5814 dbSNP
rs1300887455 5815 dbSNP
rs8089639 5820 dbSNP
rs984070391 5821 dbSNP
rs1375637181 5833 dbSNP
rs566685707 5837 dbSNP
rs1446131259 5841 dbSNP
rs1464790722 5860 dbSNP
rs532288057 5862 dbSNP
rs1020294720 5865 dbSNP
rs1470849741 5866 dbSNP
rs551927064 5869 dbSNP
rs186209273 5871 dbSNP
rs1255256459 5873 dbSNP
rs1452585693 5874 dbSNP
rs1174927516 5876 dbSNP
rs963713329 5881 dbSNP
rs574987910 5885 dbSNP
rs1476844340 5886 dbSNP
rs1196291939 5897 dbSNP
rs1409701081 5900 dbSNP
rs922341694 5902 dbSNP
rs998031780 5905 dbSNP
rs935116818 5906 dbSNP
rs953536895 5911 dbSNP
rs989371825 5915 dbSNP
rs141271613 5916 dbSNP
rs190678219 5917 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

miRNA-target interactions (Provided by authors)
ID Duplex structure Position
1 
miRNA  3' uuaUUCUGGUAGAAAAGGAGuu 5'
             |||  ||||  ||||||  
Target 5' -ucAAG--CAUC--UUCCUC-- 3'
 		1 - 15
Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000358232.6 | 3UTR | UCAAGCAUCUUCCUC
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
111 hsa-miR-3915 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT059544 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha 2 2
MIRT081703 ZNF507 zinc finger protein 507 2 2
MIRT083311 ZCCHC3 zinc finger CCHC-type containing 3 2 6
MIRT119046 SFT2D3 SFT2 domain containing 3 2 2
MIRT189381 TXLNA taxilin alpha 2 4
MIRT195895 C16ORF72 chromosome 16 open reading frame 72 2 6
MIRT223807 OXR1 oxidation resistance 1 2 2
MIRT292954 ZNF146 zinc finger protein 146 2 4
MIRT293949 RPL13A ribosomal protein L13a 2 6
MIRT300900 KREMEN1 kringle containing transmembrane protein 1 2 2
MIRT339332 SESN2 sestrin 2 2 2
MIRT349304 ZNF317 zinc finger protein 317 2 2
MIRT364736 TOR1B torsin family 1 member B 2 2
MIRT366233 VMA21 VMA21, vacuolar ATPase assembly factor 2 2
MIRT384605 CLIC4 chloride intracellular channel 4 2 2
MIRT401745 HLA-DRA major histocompatibility complex, class II, DR alpha 2 2
MIRT443169 UBL3 ubiquitin like 3 2 2
MIRT444215 METTL12 methyltransferase like 12 2 2
MIRT444375 SH3TC2 SH3 domain and tetratricopeptide repeats 2 2 2
MIRT445340 TCEANC transcription elongation factor A N-terminal and central domain containing 2 2
MIRT445474 KDM6A lysine demethylase 6A 2 2
MIRT445598 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 2 2
MIRT445630 TMEM50A transmembrane protein 50A 2 2
MIRT446012 VNN1 vanin 1 2 2
MIRT446115 ASTN1 astrotactin 1 2 2
MIRT446248 ELP2 elongator acetyltransferase complex subunit 2 2 2
MIRT446382 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein 2 2
MIRT446940 ZMAT3 zinc finger matrin-type 3 2 2
MIRT446967 SLCO4C1 solute carrier organic anion transporter family member 4C1 2 2
MIRT447178 PGRMC2 progesterone receptor membrane component 2 2 2
MIRT447209 APBB2 amyloid beta precursor protein binding family B member 2 2 2
MIRT447237 IHH indian hedgehog 2 2
MIRT447807 EMX1 empty spiracles homeobox 1 2 2
MIRT447853 RRP8 ribosomal RNA processing 8 2 4
MIRT448054 MMP15 matrix metallopeptidase 15 2 2
MIRT448094 RASD2 RASD family member 2 2 2
MIRT448704 KLHL11 kelch like family member 11 2 2
MIRT448851 FEM1C fem-1 homolog C 2 2
MIRT449488 ZBTB4 zinc finger and BTB domain containing 4 2 2
MIRT449785 C1orf109 chromosome 1 open reading frame 109 2 2
MIRT450774 PDE3A phosphodiesterase 3A 2 2
MIRT451124 ZNF99 zinc finger protein 99 2 2
MIRT452676 GPR156 G protein-coupled receptor 156 2 2
MIRT452888 PSD4 pleckstrin and Sec7 domain containing 4 2 2
MIRT453188 ACSF2 acyl-CoA synthetase family member 2 2 2
MIRT453353 ZNF3 zinc finger protein 3 2 2
MIRT454502 ZFYVE27 zinc finger FYVE-type containing 27 2 2
MIRT454629 FAM83H family with sequence similarity 83 member H 2 2
MIRT455183 AGTRAP angiotensin II receptor associated protein 2 2
MIRT458204 FOXL2 forkhead box L2 2 2
MIRT458723 CES2 carboxylesterase 2 2 2
MIRT458942 SAMD4B sterile alpha motif domain containing 4B 2 2
MIRT460304 FLCN folliculin 2 2
MIRT460989 SYT7 synaptotagmin 7 2 2
MIRT461697 ZNF426 zinc finger protein 426 2 2
MIRT461903 NECAB3 N-terminal EF-hand calcium binding protein 3 2 2
MIRT462193 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 2 2
MIRT462290 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H 2 2
MIRT463795 XPOT exportin for tRNA 2 2
MIRT464649 UBE2V1 ubiquitin conjugating enzyme E2 V1 2 4
MIRT465911 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough 2 4
MIRT465992 TMEM189 transmembrane protein 189 2 4
MIRT466302 TIMM22 translocase of inner mitochondrial membrane 22 2 2
MIRT466575 TBC1D2B TBC1 domain family member 2B 2 2
MIRT470558 POU2F1 POU class 2 homeobox 1 2 2
MIRT471333 PERP PERP, TP53 apoptosis effector 2 2
MIRT471659 PALM2 paralemmin 2 2 2
MIRT472363 TSPAN1 tetraspanin 1 2 2
MIRT473468 MCFD2 multiple coagulation factor deficiency 2 2 2
MIRT474702 KIF3A kinesin family member 3A 2 2
MIRT476067 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A 2 2
MIRT476077 GRB2 growth factor receptor bound protein 2 2 2
MIRT476423 GBA2 glucosylceramidase beta 2 2 2
MIRT476463 GATAD2B GATA zinc finger domain containing 2B 2 2
MIRT477877 DYNLL2 dynein light chain LC8-type 2 2 2
MIRT478240 DDX3X DEAD-box helicase 3, X-linked 2 4
MIRT479460 CDK6 cyclin dependent kinase 6 2 2
MIRT481030 BAZ2A bromodomain adjacent to zinc finger domain 2A 2 2
MIRT491496 HLA-DOA major histocompatibility complex, class II, DO alpha 2 2
MIRT497585 SLC23A1 solute carrier family 23 member 1 2 2
MIRT498542 TMEM30B transmembrane protein 30B 2 2
MIRT499263 NBPF11 NBPF member 11 2 2
MIRT504698 ZNF117 zinc finger protein 117 2 2
MIRT511288 KLHL15 kelch like family member 15 2 4
MIRT523121 HSP90B1 heat shock protein 90 beta family member 1 2 4
MIRT529601 H1F0 H1 histone family member 0 2 2
MIRT533481 TRIM71 tripartite motif containing 71 2 2
MIRT535571 NUP37 nucleoporin 37 2 4
MIRT537869 EDA2R ectodysplasin A2 receptor 2 2
MIRT538010 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 2 2
MIRT552681 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 4
MIRT554986 RAB39B RAB39B, member RAS oncogene family 2 2
MIRT556659 KMT2D lysine methyltransferase 2D 2 4
MIRT557437 GTPBP2 GTP binding protein 2 2 2
MIRT560813 CRTAP cartilage associated protein 2 2
MIRT562115 IGFBP5 insulin like growth factor binding protein 5 2 2
MIRT563103 IFRD2 interferon related developmental regulator 2 2 2
MIRT574199 LMNB1 lamin B1 2 2
MIRT623920 FMNL3 formin like 3 2 2
MIRT626551 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 2 2
MIRT645458 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 2 2
MIRT649082 CACNA1B calcium voltage-gated channel subunit alpha1 B 2 2
MIRT659477 CLDN1 claudin 1 2 2
MIRT667950 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 2 2
MIRT701981 MIER3 MIER family member 3 2 2
MIRT708694 TFDP2 transcription factor Dp-2 2 2
MIRT709649 DFFB DNA fragmentation factor subunit beta 2 2
MIRT710090 FAM229B family with sequence similarity 229 member B 2 2
MIRT718396 ALDH1A3 aldehyde dehydrogenase 1 family member A3 2 2
MIRT724972 TNS1 tensin 1 2 2
MIRT756050 HRH4 histamine receptor H4 2 1
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-miR-3915 Paclitaxel 36314 NSC125973 approved resistant High Prostate Cancer cell line (DU-145, PC-3)
hsa-miR-3915 Cisplatin + Decitabine sensitive High Non-Small Cell Lung Cancer cell line (A549)
hsa-mir-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (BxPC3)
hsa-miR-3915 Tripterygium wilfordii Hook F sensitive tissue
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved resistant cell line (A549)
hsa-miR-3915 Cisplatin 5460033 NSC119875 approved sensitive cell line (A549)
hsa-miR-3915 Gemcitabine 60750 NSC613327 approved sensitive cell line (PANC-1) (1500 ng/ml)

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