miRTarBase - #MIRT446290


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pre-miRNA Information
pre-miRNA hsa-mir-3973   
Genomic Coordinates chr11: 36010098 - 36010204
Description Homo sapiens miR-3973 stem-loop
Comment None
RNA Secondary Structure

Mature miRNA Information
Mature miRNA hsa-miR-3973
Sequence 84| ACAAAGUACAGCAUUAGCCUUAG |106
Evidence Experimental
Experiments Illumina
SNPs in miRNA
Mutant ID Mutant Position Mutant Source
rs770990564 3 dbSNP
rs1265409247 6 dbSNP
rs776720932 7 dbSNP
rs1303596672 18 dbSNP
rs183016698 23 dbSNP
Putative Targets

Gene Information
Gene Symbol RIMKLB   
Synonyms FAM80B, NAAGS, NAAGS-I
Description ribosomal modification protein rimK like family member B
Transcript NM_020734   
Expression
Putative miRNA Targets on RIMKLB
3'UTR of RIMKLB
(miRNA target sites are highlighted)		 
>RIMKLB|NM_020734|3'UTR
   1 CTCCACTGGTAATTAACCAACAAAACCCTTGTAAAACTTTCTTTCTTCTTTTCTATTTTTAAAACCAACTTGCAATGCTG
  81 TTCATGGAGGATGCTCAGGAAGATGAGAGAAAATTAGTAGGATTAGTTGGAGAGAGTGGGAGATAGATGAGACCTCTGCT
 161 AGTAAGATGTTACTTTCATTTACAAATCCTACAAATAGAGAGGCAGAATAGGTGGGGTATAGAAAAATGTCAGGCTCTCA
 241 TAGTTACCCTTTTAAATTGCTAAAAAATGTGTATGCTCATAGGCCATGAGGAACAAATACTTTTTTTTTTTCATGGTCCC
 321 TTGCTTTTGTTTTTGTACAAAAAAAAATGGTTTTGCTACAAATATCCAAGTAGCATAACTTCACATTGTGTTGGAAGATT
 401 TGTCATCAGTGAGGAAAACATCTGCATAAATTACAGGAATTTTTGTATTATACAGCTCTGAAAATTCTGCCATTTCCTTA
 481 TTAACTAGCAGCTTTAGTTTGTAGTTTATGAAATCTTGAGGGGCTCTTTTACTGGGATTTCTTATTTTTTTGTTTTTTCC
 561 CGCTTAATTTGGTGGGAGGTCAAATTGAATATAACCCAATAAAGGCTTCTTAATGACAAAATTGGCATGTTTGCATGATG
 641 AAATGGAAATGAACAGTATTGCAATGTCCGGTATACAAAATAACATTAATTCAATGTAGATAAAATTACACTAGTTTAAA
 721 ATATGTGCATTCACTTGTATTTGTTAGTGTTTTAGTCTTTTTTGAAAGATGTGCTCTGTTAATGTTGCTTTTTTTTTTTT
 801 TTTTAATACATGCTAGTCTAACATTTCCTGCTCTATGCCTGCATCTTTAACAATGGCCAAAGTGAAGAAAATGCTACCTT
 881 TTTTGTTAACAAGACACTGACTTGAAACATGTACATTTAAAGCCTTTTATTTTTTCCCTTTTTGTTTTGGTAGTTGGGCA
 961 TTTAAATAAGGACAAGGAAAAATATTTTTGGGGGCAAATCAAGAGCCTATGAGTTCTAAGTATAAAGCTGAAGTGATTTC
1041 GAATGCCAGCGTTATATATTTGCATTTTTCACATTTTACGAGGGAGTATATGTGTATGTGTGTGCACGCATGCATGTGTA
1121 TGTGTTTTGCTTTTTGTTTCCATCAACTAATCAAAAAGGATAATTTAGAAAATGGAGCATGATGGGAAACAGAGTTTTTG
1201 ACTTTAAAAAACAGATGAGTTGTTTTCATAAGTAGACTCCACTGGGGTAGAGGTATTCACCTTAAAACATAGGGTGAGTA
1281 GATGCTTTTTTAGGCCTTTTTGTGTATATGTACGTTGTTTGTTTTTTTCCTTTTGTTTCTAGCCTGTTCAGTGTACAGTT
1361 TATTCAAGGCTACATGCTTTTCTTTAATGCTTCTGGCTATGCATTTTCTCTTTTTACATATAGGATTTGGGATTGGGGGT
1441 GGGTTGGATGTTTTTGTTTGGGGACTTATTTAGTAGTATTGAGTCTCTTATAGCCCTACTCTTAAGCCTTCAATACTGTC
1521 CACTCTTTATATTCCTTTACTTGCAGAATTTATAAAAGCCCCCAAACTGCATATAATATGAGCCTTTAAAACATGGGTAA
1601 AACTAATCCCATTGATGGGTTTGGATGGTATGTTAAGAAATGGAGATGCTGCAGAGCCCAACGTAATTTTTTAAACAGCA
1681 AGTTTTCCATCTCCCTACGAATCCTCTGAAGCTTTTACCCAAGCCCTTTCTTGCCTCTCCAGTGCTATTTTCCTTCAGAT
1761 GGACCTTAAACATAATTTCTTGGACACTACTAGAGAGACTTCGAGGCAATAATAAAAGATCAGTATTAACCAGCTATAAC
1841 AGAGGTTTGATCATGCTTACTTGTACAGTTTTTCCCCCGTTTTAAAAAGGAATGTAATAAAATTTGTTTTTTCCATAGAA
1921 TTAAATAATATTAAAATTGAGTGAAAGGTTGATTGTTGATGAATAGAATAGTACCTCTCATCTGTGCAGTGTCTCATTTC
2001 ACCTCAGAGAAAAGGATACATAAGAGGAGTTTGTAATTTATCTTAGGATATTCTAATTGCATTTAAAAGAACTTATCTTG
2081 CGCAGGGTAAATGGGGGACTCACATACATATATTAATACCTCTGACTCATTAACAGAAAGAAATACTTGGTACTTCTTTC
2161 GCTGAATGACCATACTGTGGAGGATGCATACTATTTGGTATAGAGAAATAAATGAGGAAGAAAGAACTGCTTAATTAAAT
2241 TATCATTCATATGTTCATATAGAGACCATCTGGTTGCCATGTGTATTATGACACATACACTTTGAATAGTTACATATCAC
2321 AAGTATGTAGTTCATGTTTGTGTTGGTGGGGTAAGGCATCAGGAAAAATGTAGTTAGTCTTTTCTTAACTTATACCAAAT
2401 TAACCAACTATATTATAGGAAATATGTGAAATTAGTTCATTAGCTTTATTCACTATTATGCATTCACATGATATTAAAAC
2481 GTACACTCACATGTTAGAATGAAAAGAGCAGTAGTTATCTTAGATTTTAAAAACATGGATATCTTCTTGAATTCCTTCAA
2561 GATTGAGGTAGAGAATAAGAGCAAATCATTCTGGAAGTACCTTAAGGAAACAAACAGCAGCAGATATTTAGGTTAAACTT
2641 ATTTTCATAATTGTTTAATAACTTTTGTATAATCTTCATTGCTATTATGAGAGAGAATGTATATATCAAATATGTGTAAT
2721 GATAAAATCTGAATTGTAAAATTTTTGTATATTGTTAAAATTGTAATTCTAAATTGTATTTCAAAAATGATTATTTCTGA
2801 TATTGTTTTTATGTCACCCATGATGAAAACTGGACTTTATATATCTAAACATACAAGTATGAACTATTCTATTTAAAATT
2881 TTTAATAGTTTTTTTCTTTTTTGGTGCCTATAATTGATTGGTCATTTCTGCTGGCTTTTCTCCAATGAACATTGAAATCT
2961 TCCTGTATATGTTACCAATAAGAAAACTACCCTGGAACAGTAGAAAAACCCAACAAGAGACTTGGCATTCATCAAGCACA
3041 TTATCAGACTTTGAGAACATATTGAAGGCATTGACTTTGAAAATCATCTCTTTTTCTCAAGAAGAAAGCAATGGAGAAGC
3121 AAATTTGTTTCATTCAGTGAATCCCCAGTTTGGGGCTTGTGGGGCTTAGAGACATTGTGAAATCAAATCTTGTGTTATAC
3201 TTTTCTCCTGGCTCACTTTTTTTGAGAAGGTTTATGGGCTATTTGGCTGGTGAGACACGATCCCCTCCTAAGAAAATGTA
3281 GGTGCTCAGACAGGTAACCACTGCTGCTACTGTTTTTATTTGTTTGTTTGTTCAATTTTATTTAAGATTTGTTTTTGTTG
3361 TACTAGGATTTTAAAAAATGTAATATATTGCAGGATTTATAACCAGG
Target sites Provided by authors   Predicted by miRanda    DRVs    SNPs    DRVs & SNPs
miRNA-target interactions
(Predicted by miRanda)
ID Duplex structure Position Score MFE
1 
miRNA  3' gaUUCCGAUUACGACAUGAAAca 5'
            ||  || :||:| ||||||  
Target 5' tcAAATCTTGTGTTATACTTTtc 3'
 3183 - 3205 145.00 -7.40
2 
miRNA  3' gauucCGAUUA--CGAC-AUGAAAca 5'
               ||||:|  | || ||||||  
Target 5' cctctGCTAGTAAGATGTTACTTTca 3'
 153 - 178 140.00 -7.30
3 
miRNA  3' gaUUCCGAU-UACGACAUGAAAca 5'
            ||||||| ||||| | ||||  
Target 5' tcAAGGCTACATGCTTTTCTTTaa 3'
 1364 - 1387 137.00 -13.90
DRVs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
COSM1264174 1 COSMIC
COSM4045281 1 COSMIC
COSN30484401 7 COSMIC
COSN30509191 29 COSMIC
COSN30611927 44 COSMIC
COSN30111150 76 COSMIC
COSN22871965 348 COSMIC
COSN17312128 366 COSMIC
COSN26241151 505 COSMIC
COSN8586877 588 COSMIC
COSN17717276 611 COSMIC
COSN20109176 805 COSMIC
COSN1592491 1001 COSMIC
COSN30170566 1225 COSMIC
COSN26645980 1322 COSMIC
COSN31588409 1329 COSMIC
COSN26564972 1343 COSMIC
COSN31548420 1382 COSMIC
COSN16431263 1419 COSMIC
COSN31543089 1803 COSMIC
COSN14514222 1880 COSMIC
COSN31545591 1919 COSMIC
COSN5869806 1989 COSMIC
COSN8542326 2266 COSMIC
COSN20109178 2533 COSMIC
COSN22476335 2996 COSMIC
COSN31531032 3058 COSMIC
COSN1592496 3279 COSMIC
COSN31523688 3308 COSMIC
COSN31565172 3324 COSMIC
COSN31523689 3362 COSMIC
SNPs in gene 3'UTRs
Mutant ID Mutant Position Mutant Source
rs1422340523 4 dbSNP
rs1382657460 9 dbSNP
rs770011284 11 dbSNP
rs1283954927 15 dbSNP
rs1172335362 20 dbSNP
rs1403252229 27 dbSNP
rs773313960 28 dbSNP
rs762993821 30 dbSNP
rs766357392 31 dbSNP
rs1447549677 32 dbSNP
rs200833089 37 dbSNP
rs780494079 40 dbSNP
rs998217455 40 dbSNP
rs759442837 41 dbSNP
rs889718603 42 dbSNP
rs747518119 43 dbSNP
rs1420023810 45 dbSNP
rs767222188 47 dbSNP
rs752481716 49 dbSNP
rs755628816 49 dbSNP
rs1181035614 56 dbSNP
rs1000428538 59 dbSNP
rs3858672 62 dbSNP
rs765635300 69 dbSNP
rs141230547 76 dbSNP
rs1009911940 80 dbSNP
rs1206245703 83 dbSNP
rs1307688386 85 dbSNP
rs1024025278 107 dbSNP
rs181581860 121 dbSNP
rs1357691328 122 dbSNP
rs1156980457 131 dbSNP
rs1409705817 132 dbSNP
rs1371303315 135 dbSNP
rs1360117806 138 dbSNP
rs779776246 153 dbSNP
rs117004446 154 dbSNP
rs1462721860 157 dbSNP
rs1415327552 167 dbSNP
rs751272727 169 dbSNP
rs1339015354 179 dbSNP
rs979799786 187 dbSNP
rs1419710036 194 dbSNP
rs529849642 197 dbSNP
rs768055379 197 dbSNP
rs1472213332 201 dbSNP
rs1310586247 203 dbSNP
rs73247491 205 dbSNP
rs984675385 206 dbSNP
rs910078996 213 dbSNP
rs1245782347 215 dbSNP
rs1211361339 217 dbSNP
rs940186324 221 dbSNP
rs1274141985 234 dbSNP
rs1228372146 236 dbSNP
rs1315623016 240 dbSNP
rs1309326387 241 dbSNP
rs370668298 244 dbSNP
rs779333760 244 dbSNP
rs1324172561 248 dbSNP
rs1396477794 252 dbSNP
rs1306534811 262 dbSNP
rs1456705603 269 dbSNP
rs1349332855 270 dbSNP
rs1361984304 271 dbSNP
rs922686546 274 dbSNP
rs1419155565 279 dbSNP
rs933954219 280 dbSNP
rs1198534801 287 dbSNP
rs1469515115 287 dbSNP
rs757819079 289 dbSNP
rs1208488870 298 dbSNP
rs1485211060 299 dbSNP
rs772421483 299 dbSNP
rs1240340130 300 dbSNP
rs1263022607 300 dbSNP
rs765428385 301 dbSNP
rs796599924 301 dbSNP
rs746259618 302 dbSNP
rs1326402567 308 dbSNP
rs1280317729 312 dbSNP
rs1381456615 312 dbSNP
rs1440440544 313 dbSNP
rs1202842513 314 dbSNP
rs889699762 315 dbSNP
rs1441530514 316 dbSNP
rs1176853304 317 dbSNP
rs1379700205 319 dbSNP
rs1478404989 320 dbSNP
rs776131344 320 dbSNP
rs1174487013 324 dbSNP
rs1400378241 325 dbSNP
rs1414235306 330 dbSNP
rs1455358457 330 dbSNP
rs1451492922 336 dbSNP
rs1187478607 339 dbSNP
rs200444612 339 dbSNP
rs34905883 339 dbSNP
rs756338737 339 dbSNP
rs1054206782 340 dbSNP
rs1278374693 343 dbSNP
rs1403073463 348 dbSNP
rs891605903 357 dbSNP
rs1445123918 358 dbSNP
rs1324488282 360 dbSNP
rs1010026137 366 dbSNP
rs1334606478 367 dbSNP
rs1436057031 370 dbSNP
rs763626182 376 dbSNP
rs1166987646 385 dbSNP
rs1460133841 389 dbSNP
rs1375184626 391 dbSNP
rs1194345419 394 dbSNP
rs1233374851 398 dbSNP
rs1023974364 403 dbSNP
rs1256043941 405 dbSNP
rs1276218228 406 dbSNP
rs906986016 414 dbSNP
rs1273942786 420 dbSNP
rs1194338951 423 dbSNP
rs1341693831 425 dbSNP
rs2969088 427 dbSNP
rs1034040005 431 dbSNP
rs1291368516 433 dbSNP
rs749557493 436 dbSNP
rs959875820 437 dbSNP
rs1258544342 448 dbSNP
rs984341975 462 dbSNP
rs759625868 476 dbSNP
rs1196615796 494 dbSNP
rs1168082163 495 dbSNP
rs1461257099 498 dbSNP
rs770010654 499 dbSNP
rs746933079 508 dbSNP
rs1475806514 514 dbSNP
rs1232411121 526 dbSNP
rs1179742938 527 dbSNP
rs1251532340 527 dbSNP
rs1452215842 527 dbSNP
rs1209394265 529 dbSNP
rs922674836 535 dbSNP
rs1271015224 542 dbSNP
rs761877646 542 dbSNP
rs1235105131 545 dbSNP
rs1335389615 545 dbSNP
rs375794502 545 dbSNP
rs1201148184 547 dbSNP
rs144955951 556 dbSNP
rs1336952906 559 dbSNP
rs985847825 560 dbSNP
rs1392796329 563 dbSNP
rs1439640925 563 dbSNP
rs1328304262 564 dbSNP
rs750132834 565 dbSNP
rs1426149790 571 dbSNP
rs771389048 574 dbSNP
rs1464410330 577 dbSNP
rs1471202741 582 dbSNP
rs891721840 591 dbSNP
rs760547742 598 dbSNP
rs1193296138 600 dbSNP
rs1467286402 624 dbSNP
rs560675935 625 dbSNP
rs898145094 626 dbSNP
rs866514744 628 dbSNP
rs866837793 634 dbSNP
rs1331212815 663 dbSNP
rs887066667 665 dbSNP
rs774936688 670 dbSNP
rs1019368305 671 dbSNP
rs1328992911 677 dbSNP
rs1368326172 681 dbSNP
rs753500757 682 dbSNP
rs1001319493 685 dbSNP
rs1344908291 686 dbSNP
rs1316881011 688 dbSNP
rs1402929714 693 dbSNP
rs899695572 697 dbSNP
rs146878707 705 dbSNP
rs1452872726 707 dbSNP
rs1397135350 715 dbSNP
rs1194434081 717 dbSNP
rs887428677 725 dbSNP
rs996188904 726 dbSNP
rs1213611678 731 dbSNP
rs1319679574 735 dbSNP
rs532467935 738 dbSNP
rs1209507050 763 dbSNP
rs753171277 764 dbSNP
rs961659222 779 dbSNP
rs1234518121 785 dbSNP
rs562494583 787 dbSNP
rs1268756825 788 dbSNP
rs1357029280 788 dbSNP
rs1174526633 789 dbSNP
rs1391425235 789 dbSNP
rs1409579406 789 dbSNP
rs1433583486 789 dbSNP
rs530021661 789 dbSNP
rs56912350 789 dbSNP
rs796457636 789 dbSNP
rs767958622 790 dbSNP
rs1184553632 796 dbSNP
rs778367616 799 dbSNP
rs1476383057 800 dbSNP
rs77231082 804 dbSNP
rs185954279 805 dbSNP
rs955630218 805 dbSNP
rs74524831 807 dbSNP
rs1484422183 811 dbSNP
rs985534679 812 dbSNP
rs1210435745 814 dbSNP
rs1306558072 816 dbSNP
rs911297849 817 dbSNP
rs1216705083 823 dbSNP
rs370056069 832 dbSNP
rs935969781 832 dbSNP
rs1293250754 834 dbSNP
rs771333656 842 dbSNP
rs1357507790 853 dbSNP
rs117170609 874 dbSNP
rs1441836338 876 dbSNP
rs1265649877 878 dbSNP
rs1172724133 885 dbSNP
rs774792986 898 dbSNP
rs1411451282 902 dbSNP
rs1424021134 912 dbSNP
rs1164154054 915 dbSNP
rs990200367 925 dbSNP
rs760197545 928 dbSNP
rs879923054 939 dbSNP
rs913148564 943 dbSNP
rs1369537058 945 dbSNP
rs552182013 949 dbSNP
rs1459958226 950 dbSNP
rs1161980500 951 dbSNP
rs1387880260 953 dbSNP
rs1423477920 954 dbSNP
rs1298389027 963 dbSNP
rs1230827038 967 dbSNP
rs1020711041 972 dbSNP
rs967581601 974 dbSNP
rs1342034170 975 dbSNP
rs36031758 976 dbSNP
rs766088881 976 dbSNP
rs1206138333 989 dbSNP
rs945987701 990 dbSNP
rs1045527145 994 dbSNP
rs907005695 995 dbSNP
rs981706863 996 dbSNP
rs755312797 998 dbSNP
rs140694717 1003 dbSNP
rs777591059 1006 dbSNP
rs145892443 1007 dbSNP
rs1340993178 1014 dbSNP
rs1005885299 1019 dbSNP
rs749208796 1021 dbSNP
rs1447731694 1025 dbSNP
rs770717277 1026 dbSNP
rs1036069140 1030 dbSNP
rs897393208 1041 dbSNP
rs994451149 1042 dbSNP
rs191151954 1047 dbSNP
rs1419957214 1049 dbSNP
rs34892777 1050 dbSNP
rs930967230 1051 dbSNP
rs1178630959 1052 dbSNP
rs759032701 1056 dbSNP
rs1018351967 1057 dbSNP
rs1212192796 1059 dbSNP
rs867740478 1064 dbSNP
rs377476529 1065 dbSNP
rs1186288947 1070 dbSNP
rs886778701 1074 dbSNP
rs990088151 1080 dbSNP
rs1296501137 1081 dbSNP
rs1257219623 1085 dbSNP
rs1425940430 1090 dbSNP
rs943935554 1092 dbSNP
rs1370511427 1093 dbSNP
rs913261524 1096 dbSNP
rs1040954028 1097 dbSNP
rs1385193277 1097 dbSNP
rs764793484 1099 dbSNP
rs1294069668 1100 dbSNP
rs1452944626 1103 dbSNP
rs745852012 1104 dbSNP
rs1160644822 1106 dbSNP
rs760340419 1109 dbSNP
rs775406526 1113 dbSNP
rs1191287679 1116 dbSNP
rs775598244 1117 dbSNP
rs1287932036 1121 dbSNP
rs1268436546 1131 dbSNP
rs937158242 1132 dbSNP
rs9783460 1141 dbSNP
rs1020258484 1147 dbSNP
rs752563954 1149 dbSNP
rs1278493384 1150 dbSNP
rs758340625 1151 dbSNP
rs1332658027 1153 dbSNP
rs763743346 1154 dbSNP
rs751398437 1156 dbSNP
rs757039877 1163 dbSNP
rs781456837 1164 dbSNP
rs746153524 1168 dbSNP
rs756262533 1170 dbSNP
rs780289513 1171 dbSNP
rs941784528 1173 dbSNP
rs759251541 1174 dbSNP
rs773837100 1176 dbSNP
rs541721743 1177 dbSNP
rs897466888 1181 dbSNP
rs1178714594 1184 dbSNP
rs777013232 1184 dbSNP
rs1381561631 1185 dbSNP
rs1416810430 1186 dbSNP
rs1035971569 1189 dbSNP
rs997204178 1190 dbSNP
rs202197030 1191 dbSNP
rs891405205 1193 dbSNP
rs1377881441 1194 dbSNP
rs762325769 1196 dbSNP
rs148153196 1203 dbSNP
rs1018882340 1206 dbSNP
rs1256433121 1213 dbSNP
rs1226442897 1215 dbSNP
rs1305487667 1217 dbSNP
rs991707384 1229 dbSNP
rs1334508998 1239 dbSNP
rs1400485638 1242 dbSNP
rs1405255088 1246 dbSNP
rs957436077 1250 dbSNP
rs920097233 1253 dbSNP
rs1402486026 1257 dbSNP
rs1166889750 1262 dbSNP
rs1020342308 1269 dbSNP
rs1333296708 1271 dbSNP
rs931039518 1275 dbSNP
rs1223322962 1278 dbSNP
rs1302210414 1280 dbSNP
rs1475147512 1283 dbSNP
rs1415853486 1285 dbSNP
rs982957308 1297 dbSNP
rs1314215635 1301 dbSNP
rs967310089 1305 dbSNP
rs981859600 1307 dbSNP
rs1458500671 1308 dbSNP
rs1479550480 1309 dbSNP
rs765758021 1311 dbSNP
rs1236914817 1314 dbSNP
rs928564072 1314 dbSNP
rs1290968847 1315 dbSNP
rs958914441 1315 dbSNP
rs1340505899 1318 dbSNP
rs1327792175 1329 dbSNP
rs531900677 1331 dbSNP
rs865980428 1334 dbSNP
rs1402955266 1335 dbSNP
rs943735690 1336 dbSNP
rs1392942140 1347 dbSNP
rs1165442189 1352 dbSNP
rs909075612 1358 dbSNP
rs1040937813 1361 dbSNP
rs1363253253 1367 dbSNP
rs899794328 1368 dbSNP
rs766626488 1374 dbSNP
rs147418862 1376 dbSNP
rs759299224 1379 dbSNP
rs1199023514 1381 dbSNP
rs767251859 1383 dbSNP
rs182623919 1391 dbSNP
rs1211512442 1397 dbSNP
rs1428269868 1409 dbSNP
rs1465965258 1416 dbSNP
rs186336552 1425 dbSNP
rs770087333 1431 dbSNP
rs1378633214 1441 dbSNP
rs1441539636 1449 dbSNP
rs1294255640 1451 dbSNP
rs1392691602 1470 dbSNP
rs1042220811 1474 dbSNP
rs1406441149 1479 dbSNP
rs1051904368 1483 dbSNP
rs1156891855 1491 dbSNP
rs891357506 1492 dbSNP
rs1381166689 1497 dbSNP
rs903164074 1507 dbSNP
rs1318985259 1510 dbSNP
rs1039969136 1511 dbSNP
rs1256687587 1514 dbSNP
rs1307479418 1517 dbSNP
rs1203199948 1521 dbSNP
rs1283010811 1524 dbSNP
rs1213839383 1526 dbSNP
rs1246713476 1529 dbSNP
rs893282057 1530 dbSNP
rs1265533758 1541 dbSNP
rs1233051661 1544 dbSNP
rs1002916691 1545 dbSNP
rs1276943768 1559 dbSNP
rs780430646 1563 dbSNP
rs1437896554 1572 dbSNP
rs1196774926 1579 dbSNP
rs1020293008 1584 dbSNP
rs1316785895 1585 dbSNP
rs1478008758 1588 dbSNP
rs141034003 1597 dbSNP
rs1195640995 1601 dbSNP
rs1417282782 1609 dbSNP
rs548838302 1620 dbSNP
rs1036124289 1628 dbSNP
rs1165406854 1630 dbSNP
rs755609285 1631 dbSNP
rs1013589667 1635 dbSNP
rs1422850056 1642 dbSNP
rs1027132721 1647 dbSNP
rs768805988 1655 dbSNP
rs570155554 1659 dbSNP
rs982539666 1662 dbSNP
rs991788928 1663 dbSNP
rs1402223727 1664 dbSNP
rs1016209912 1665 dbSNP
rs908339785 1666 dbSNP
rs1339068498 1667 dbSNP
rs1361700719 1668 dbSNP
rs1220978276 1687 dbSNP
rs777269985 1688 dbSNP
rs976353029 1699 dbSNP
rs1361125682 1700 dbSNP
rs753729849 1714 dbSNP
rs1335015338 1722 dbSNP
rs1414852201 1727 dbSNP
rs1418474084 1731 dbSNP
rs1168510456 1736 dbSNP
rs1478746426 1738 dbSNP
rs1423801817 1741 dbSNP
rs1186593469 1745 dbSNP
rs1481956097 1748 dbSNP
rs1238849041 1752 dbSNP
rs920931246 1778 dbSNP
rs1437664043 1781 dbSNP
rs1256525096 1786 dbSNP
rs150333388 1794 dbSNP
rs987139232 1796 dbSNP
rs1293151073 1803 dbSNP
rs910181219 1815 dbSNP
rs1290555569 1820 dbSNP
rs1285031304 1824 dbSNP
rs1054124169 1825 dbSNP
rs1353750900 1826 dbSNP
rs1329042591 1827 dbSNP
rs915064022 1837 dbSNP
rs199751953 1841 dbSNP
rs943067086 1841 dbSNP
rs945225117 1848 dbSNP
rs1041805182 1855 dbSNP
rs1182125819 1857 dbSNP
rs1474969851 1860 dbSNP
rs1236793127 1868 dbSNP
rs1182330978 1874 dbSNP
rs1209778003 1874 dbSNP
rs761878505 1879 dbSNP
rs1273139418 1880 dbSNP
rs947551471 1894 dbSNP
rs1442830109 1896 dbSNP
rs1290648639 1897 dbSNP
rs1374938161 1904 dbSNP
rs568566501 1904 dbSNP
rs867904819 1905 dbSNP
rs1003398222 1907 dbSNP
rs1377313071 1912 dbSNP
rs1057117557 1916 dbSNP
rs1456301048 1919 dbSNP
rs894445447 1924 dbSNP
rs1265643881 1929 dbSNP
rs1399551672 1930 dbSNP
rs1378099623 1932 dbSNP
rs894499697 1945 dbSNP
rs368088232 1954 dbSNP
rs756118104 1955 dbSNP
rs370221926 1956 dbSNP
rs1489753156 1957 dbSNP
rs971870777 1961 dbSNP
rs1004822186 1962 dbSNP
rs1381287596 1969 dbSNP
rs1243121356 1970 dbSNP
rs1288466149 1972 dbSNP
rs1351517754 1972 dbSNP
rs374575980 1973 dbSNP
rs987602107 1976 dbSNP
rs1300328136 1983 dbSNP
rs1015722513 1989 dbSNP
rs778721959 1992 dbSNP
rs1385064249 2002 dbSNP
rs965058710 2003 dbSNP
rs1369654627 2006 dbSNP
rs780404216 2006 dbSNP
rs137965008 2008 dbSNP
rs1398879661 2011 dbSNP
rs964695755 2013 dbSNP
rs1160132591 2016 dbSNP
rs745642538 2020 dbSNP
rs989142210 2021 dbSNP
rs1174386381 2022 dbSNP
rs1435218674 2025 dbSNP
rs560222200 2028 dbSNP
rs953872111 2034 dbSNP
rs1268673752 2038 dbSNP
rs989392663 2048 dbSNP
rs1210612517 2049 dbSNP
rs915180439 2053 dbSNP
rs1487363251 2057 dbSNP
rs947664027 2058 dbSNP
rs1217705443 2062 dbSNP
rs945224316 2069 dbSNP
rs774540370 2074 dbSNP
rs1230794683 2075 dbSNP
rs191041126 2077 dbSNP
rs868070717 2082 dbSNP
rs1476902 2083 dbSNP
rs768636850 2086 dbSNP
rs1012918736 2087 dbSNP
rs1400294969 2090 dbSNP
rs1441648358 2092 dbSNP
rs566597247 2109 dbSNP
rs1037727542 2111 dbSNP
rs1378526155 2115 dbSNP
rs538719566 2126 dbSNP
rs1170659522 2128 dbSNP
rs1477125087 2130 dbSNP
rs1194493538 2135 dbSNP
rs1425940955 2135 dbSNP
rs1407582605 2151 dbSNP
rs776762272 2161 dbSNP
rs894464619 2162 dbSNP
rs117662233 2173 dbSNP
rs1256335627 2180 dbSNP
rs1198009711 2183 dbSNP
rs1315977766 2194 dbSNP
rs1279957028 2196 dbSNP
rs1026253847 2197 dbSNP
rs954660892 2199 dbSNP
rs371063742 2201 dbSNP
rs1332648835 2217 dbSNP
rs1310167744 2226 dbSNP
rs1376934835 2231 dbSNP
rs1403436585 2231 dbSNP
rs1240604452 2232 dbSNP
rs1331081246 2233 dbSNP
rs1008739142 2237 dbSNP
rs1403091769 2242 dbSNP
rs747828458 2244 dbSNP
rs770390028 2250 dbSNP
rs1472520204 2252 dbSNP
rs1366771339 2260 dbSNP
rs1349573262 2279 dbSNP
rs1424614011 2286 dbSNP
rs114882326 2289 dbSNP
rs776259821 2290 dbSNP
rs772825146 2294 dbSNP
rs868457370 2297 dbSNP
rs1259953683 2299 dbSNP
rs773759606 2300 dbSNP
rs74061813 2302 dbSNP
rs1263133571 2303 dbSNP
rs1246606550 2304 dbSNP
rs1340710316 2311 dbSNP
rs1307993053 2314 dbSNP
rs1445068468 2315 dbSNP
rs997875983 2319 dbSNP
rs924893057 2328 dbSNP
rs1405255848 2330 dbSNP
rs1388747041 2333 dbSNP
rs763428538 2341 dbSNP
rs1379926665 2344 dbSNP
rs1176963007 2345 dbSNP
rs938816580 2346 dbSNP
rs1202902439 2349 dbSNP
rs796912253 2352 dbSNP
rs1439601627 2355 dbSNP
rs1179809097 2359 dbSNP
rs915960980 2361 dbSNP
rs1232506392 2371 dbSNP
rs1356387939 2376 dbSNP
rs766972300 2376 dbSNP
rs1037800981 2378 dbSNP
rs948809648 2378 dbSNP
rs1174542700 2379 dbSNP
rs1356338312 2380 dbSNP
rs1427570887 2381 dbSNP
rs1021971691 2384 dbSNP
rs144920337 2384 dbSNP
rs575281962 2394 dbSNP
rs1329872530 2397 dbSNP
rs1326039238 2400 dbSNP
rs978023689 2413 dbSNP
rs993499386 2417 dbSNP
rs1359927981 2419 dbSNP
rs1157134641 2424 dbSNP
rs1421723144 2426 dbSNP
rs927754747 2439 dbSNP
rs1477534763 2452 dbSNP
rs867168993 2456 dbSNP
rs777295816 2460 dbSNP
rs1334662560 2461 dbSNP
rs201556222 2468 dbSNP
rs1284783280 2469 dbSNP
rs1056770 2471 dbSNP
rs916021206 2475 dbSNP
rs1219015067 2476 dbSNP
rs964417500 2480 dbSNP
rs143440633 2481 dbSNP
rs182881427 2482 dbSNP
rs758698385 2487 dbSNP
rs1222632833 2496 dbSNP
rs1401856803 2497 dbSNP
rs1258655761 2511 dbSNP
rs1361415325 2518 dbSNP
rs1010582797 2519 dbSNP
rs1341314748 2522 dbSNP
rs1413721548 2522 dbSNP
rs1048834830 2524 dbSNP
rs1174283609 2525 dbSNP
rs138723846 2529 dbSNP
rs1422362084 2540 dbSNP
rs1272462487 2542 dbSNP
rs574635159 2542 dbSNP
rs966312918 2543 dbSNP
rs1208933054 2547 dbSNP
rs977737162 2559 dbSNP
rs1281130891 2566 dbSNP
rs1204936266 2575 dbSNP
rs760317058 2577 dbSNP
rs888471816 2584 dbSNP
rs763568486 2585 dbSNP
rs1037272965 2590 dbSNP
rs901329853 2594 dbSNP
rs998346177 2601 dbSNP
rs1028019259 2605 dbSNP
rs1446045331 2607 dbSNP
rs1266995742 2612 dbSNP
rs1480330016 2615 dbSNP
rs1470069989 2625 dbSNP
rs1168404036 2629 dbSNP
rs779202298 2635 dbSNP
rs1419589043 2643 dbSNP
rs889501853 2654 dbSNP
rs1010660422 2657 dbSNP
rs948882732 2659 dbSNP
rs1375293589 2663 dbSNP
rs779115866 2664 dbSNP
rs1184596336 2666 dbSNP
rs753383136 2668 dbSNP
rs1256741505 2673 dbSNP
rs929284244 2675 dbSNP
rs1308190520 2678 dbSNP
rs757236485 2685 dbSNP
rs1226875876 2687 dbSNP
rs977991059 2688 dbSNP
rs1039377107 2689 dbSNP
rs944669724 2689 dbSNP
rs900320491 2694 dbSNP
rs1343202218 2698 dbSNP
rs1010700243 2699 dbSNP
rs1404124611 2700 dbSNP
rs1278528677 2706 dbSNP
rs1354679679 2710 dbSNP
rs1163446499 2714 dbSNP
rs1403041311 2715 dbSNP
rs1415547641 2719 dbSNP
rs1163771208 2728 dbSNP
rs1439523154 2730 dbSNP
rs1034960106 2734 dbSNP
rs1236698377 2742 dbSNP
rs1181126161 2743 dbSNP
rs1481236527 2746 dbSNP
rs1246574991 2750 dbSNP
rs1219468168 2751 dbSNP
rs1323542551 2753 dbSNP
rs1021968139 2754 dbSNP
rs878960171 2768 dbSNP
rs1327975318 2770 dbSNP
rs960525597 2771 dbSNP
rs1352772130 2773 dbSNP
rs902308295 2777 dbSNP
rs1393127070 2778 dbSNP
rs1373987096 2779 dbSNP
rs9783480 2783 dbSNP
rs1433700694 2790 dbSNP
rs540467355 2794 dbSNP
rs748425929 2803 dbSNP
rs916420002 2804 dbSNP
rs1224758651 2806 dbSNP
rs1289888229 2812 dbSNP
rs1160834229 2814 dbSNP
rs993069275 2816 dbSNP
rs1425124180 2820 dbSNP
rs1217622669 2821 dbSNP
rs770796989 2825 dbSNP
rs1427088573 2837 dbSNP
rs1269663463 2838 dbSNP
rs984235028 2839 dbSNP
rs1487423783 2842 dbSNP
rs1369512412 2851 dbSNP
rs187652599 2855 dbSNP
rs1444741533 2860 dbSNP
rs1317239104 2861 dbSNP
rs1023641169 2862 dbSNP
rs758195162 2868 dbSNP
rs1363334826 2870 dbSNP
rs147128275 2872 dbSNP
rs769597607 2877 dbSNP
rs1283349299 2883 dbSNP
rs1398782978 2894 dbSNP
rs1298416633 2897 dbSNP
rs1386926975 2904 dbSNP
rs747255275 2905 dbSNP
rs940046623 2907 dbSNP
rs1358927134 2909 dbSNP
rs920674822 2911 dbSNP
rs929400875 2913 dbSNP
rs1313097640 2915 dbSNP
rs983845507 2917 dbSNP
rs1037240452 2922 dbSNP
rs747731068 2926 dbSNP
rs1193061954 2927 dbSNP
rs1476845548 2932 dbSNP
rs922889187 2938 dbSNP
rs934254320 2950 dbSNP
rs201084850 2953 dbSNP
rs1486093274 2962 dbSNP
rs1255187970 2965 dbSNP
rs1208007087 2966 dbSNP
rs944724050 2967 dbSNP
rs1283772618 2969 dbSNP
rs1262684443 2970 dbSNP
rs772589127 2976 dbSNP
rs1297337644 2977 dbSNP
rs1382406790 2980 dbSNP
rs1378986725 2983 dbSNP
rs1301450347 2988 dbSNP
rs1471129684 2992 dbSNP
rs755227234 2996 dbSNP
rs1011044934 3002 dbSNP
rs58866787 3003 dbSNP
rs1462994099 3006 dbSNP
rs1182280006 3007 dbSNP
rs762834016 3011 dbSNP
rs1464176133 3015 dbSNP
rs761237488 3017 dbSNP
rs1194244863 3018 dbSNP
rs777240812 3020 dbSNP
rs1423445351 3025 dbSNP
rs750991426 3026 dbSNP
rs946545641 3035 dbSNP
rs1462454785 3050 dbSNP
rs1043581561 3053 dbSNP
rs1159429087 3072 dbSNP
rs765676381 3079 dbSNP
rs1315572665 3087 dbSNP
rs902256210 3091 dbSNP
rs191768429 3092 dbSNP
rs999231531 3096 dbSNP
rs1310058242 3112 dbSNP
rs748214353 3114 dbSNP
rs1451382832 3116 dbSNP
rs764057710 3120 dbSNP
rs1331304509 3123 dbSNP
rs9783524 3129 dbSNP
rs1398795480 3137 dbSNP
rs183380468 3138 dbSNP
rs1168581780 3143 dbSNP
rs1406542521 3156 dbSNP
rs1457411834 3157 dbSNP
rs1454573541 3158 dbSNP
rs1366968123 3166 dbSNP
rs751498899 3167 dbSNP
rs1165650313 3173 dbSNP
rs896112718 3175 dbSNP
rs1012189476 3184 dbSNP
rs1178016620 3193 dbSNP
rs757064024 3195 dbSNP
rs1252512642 3205 dbSNP
rs951940654 3206 dbSNP
rs1263338334 3209 dbSNP
rs1247673582 3221 dbSNP
rs1447560341 3225 dbSNP
rs1308966523 3229 dbSNP
rs984591671 3235 dbSNP
rs910005172 3241 dbSNP
rs1338054808 3242 dbSNP
rs1330094863 3244 dbSNP
rs1012333788 3259 dbSNP
rs1023215235 3264 dbSNP
rs1305235016 3268 dbSNP
rs532504000 3271 dbSNP
rs1385697994 3283 dbSNP
rs970335544 3286 dbSNP
rs961349852 3287 dbSNP
rs972672129 3294 dbSNP
rs1238784893 3299 dbSNP
rs1365500613 3303 dbSNP
rs781004480 3315 dbSNP
rs922610364 3316 dbSNP
rs1490414448 3319 dbSNP
rs751329033 3319 dbSNP
rs934223262 3319 dbSNP
rs1284782814 3327 dbSNP
rs1214946318 3328 dbSNP
rs779016793 3330 dbSNP
rs1326085518 3336 dbSNP
rs11554711 3337 dbSNP
rs1280692347 3340 dbSNP
rs1243035986 3343 dbSNP
rs767613230 3348 dbSNP
rs950963373 3348 dbSNP
rs1285258524 3350 dbSNP
rs1177225766 3359 dbSNP
rs946930568 3361 dbSNP
rs1043865296 3362 dbSNP
rs902298167 3365 dbSNP
rs1360142165 3373 dbSNP
rs1296542569 3374 dbSNP
rs1398762828 3379 dbSNP
rs999284089 3386 dbSNP
rs1416866416 3389 dbSNP
rs1157904287 3404 dbSNP
Experimental Support 1 for Functional miRNA-Target Interaction
miRNA:Target ----
Validation Method
Conditions BC-1
Location of target site 3'UTR
Tools used in this research TargetScan , miRTarCLIP , Piranha
Original Description (Extracted from the article) ... PAR-CLIP data was present in GSM796038. RNA binding protein: AGO2. Condition:4-Thiouridine ...

- Gottwein E; Corcoran DL; Mukherjee N; et al., 2011, Cell host & microbe.

Article - Gottwein E; Corcoran DL; Mukherjee N; et al.
- Cell host & microbe, 2011
Primary effusion lymphoma (PEL) is caused by Kaposi's sarcoma-associated herpesvirus (KSHV) and frequently also harbors Epstein-Barr virus (EBV). The expression of KSHV- and EBV-encoded microRNAs (miRNAs) in PELs suggests a role for these miRNAs in latency and lymphomagenesis. Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites. In addition to a known viral analog of cellular miR-155, we show that KSHV encodes a viral miRNA that mimics cellular miR-142-3p function. In summary, this study identifies an extensive list of KSHV miRNA targets, which are likely to influence viral replication and pathogenesis.
LinkOut: [PMID: 22100165]
CLIP-seq Support 1 for dataset GSM796038
Method / RBP PAR-CLIP / AGO2
Cell line / Condition BC-1 / 4-Thiouridine
Location of target site ENST00000357529.3 | 3UTR | UCAAGCACAUUAUCAGA
Tools used in this analysis TargetScan, miRTarCLIP, and Piranha
Article / Accession Series PMID: 22100165 / GSE32109
CLIP-seq Viewer Link
MiRNA-Target Expression Profile
Dataset Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
MiRNA-Target Expression Profile (TCGA)
Tumor Pearson Correlation P-value for Pearson Correlation Spearman Correlation P-value for Spearman Correlation Samples Chart
136 hsa-miR-3973 Target Genes:
Functional analysis:
ID Target Description Validation methods
Strong evidence Less strong evidence
MIRT060560 CCND1 cyclin D1 2 2
MIRT060977 LAMC1 laminin subunit gamma 1 2 2
MIRT067617 TMPO thymopoietin 2 2
MIRT072503 RAB8B RAB8B, member RAS oncogene family 2 2
MIRT092048 ABHD5 abhydrolase domain containing 5 2 6
MIRT093449 MSMO1 methylsterol monooxygenase 1 2 2
MIRT093538 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 2 6
MIRT095404 UBE2D2 ubiquitin conjugating enzyme E2 D2 2 2
MIRT103367 CBX3 chromobox 3 2 2
MIRT110447 PLEKHA1 pleckstrin homology domain containing A1 2 10
MIRT161196 ZBTB38 zinc finger and BTB domain containing 38 2 2
MIRT161903 FXR1 FMR1 autosomal homolog 1 2 2
MIRT192775 B2M beta-2-microglobulin 2 2
MIRT195782 ATMIN ATM interactor 2 6
MIRT228194 BNC2 basonuclin 2 2 2
MIRT237882 WHSC1 nuclear receptor binding SET domain protein 2 2 4
MIRT249021 PABPC3 poly(A) binding protein cytoplasmic 3 2 8
MIRT273958 SPRYD4 SPRY domain containing 4 2 2
MIRT309023 USP53 ubiquitin specific peptidase 53 2 2
MIRT312596 G3BP1 G3BP stress granule assembly factor 1 2 4
MIRT315536 MARCKS myristoylated alanine rich protein kinase C substrate 2 2
MIRT319305 CAV1 caveolin 1 2 2
MIRT324436 TBC1D13 TBC1 domain family member 13 2 2
MIRT325710 CSTF2 cleavage stimulation factor subunit 2 2 2
MIRT340681 THRAP3 thyroid hormone receptor associated protein 3 2 2
MIRT404628 LCOR ligand dependent nuclear receptor corepressor 2 2
MIRT443473 ACPP acid phosphatase, prostate 2 2
MIRT443545 ZNRF2 zinc and ring finger 2 2 2
MIRT446290 RIMKLB ribosomal modification protein rimK like family member B 2 2
MIRT447066 MCC mutated in colorectal cancers 2 2
MIRT447365 RASA2 RAS p21 protein activator 2 2 2
MIRT450079 ZNF354C zinc finger protein 354C 2 2
MIRT454270 PSMA1 proteasome subunit alpha 1 2 2
MIRT456032 CRYZ crystallin zeta 2 8
MIRT462069 CCDC77 coiled-coil domain containing 77 2 4
MIRT466379 TGOLN2 trans-golgi network protein 2 2 4
MIRT470352 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon 2 2
MIRT471866 NUFIP2 NUFIP2, FMR1 interacting protein 2 2 4
MIRT474453 KLHL11 kelch like family member 11 2 8
MIRT476188 GOLGA8A golgin A8 family member A 2 10
MIRT476645 G2E3 G2/M-phase specific E3 ubiquitin protein ligase 2 2
MIRT481544 ARL10 ADP ribosylation factor like GTPase 10 2 10
MIRT481791 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 2 2
MIRT482527 ACTB actin beta 2 4
MIRT485570 FOXQ1 forkhead box Q1 2 2
MIRT486011 LPAR2 lysophosphatidic acid receptor 2 2 2
MIRT495182 MUC20 mucin 20, cell surface associated 2 2
MIRT496047 MORC1 MORC family CW-type zinc finger 1 2 2
MIRT497114 JRKL JRK like 2 2
MIRT497494 RGS17 regulator of G protein signaling 17 2 2
MIRT497752 OXGR1 oxoglutarate receptor 1 2 2
MIRT500217 INHBA inhibin beta A subunit 2 10
MIRT501079 SMAD7 SMAD family member 7 2 8
MIRT501453 PTPN4 protein tyrosine phosphatase, non-receptor type 4 2 8
MIRT502793 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 2 6
MIRT502879 CDK4 cyclin dependent kinase 4 2 8
MIRT505796 RSBN1 round spermatid basic protein 1 2 8
MIRT506345 NUP54 nucleoporin 54 2 6
MIRT507415 ELK4 ELK4, ETS transcription factor 2 4
MIRT509272 NPM3 nucleophosmin/nucleoplasmin 3 2 6
MIRT514931 TRIM73 tripartite motif containing 73 2 2
MIRT515441 TRIM74 tripartite motif containing 74 2 2
MIRT516026 A1CF APOBEC1 complementation factor 2 2
MIRT517375 CHST6 carbohydrate sulfotransferase 6 2 2
MIRT527925 FRY FRY microtubule binding protein 2 2
MIRT529611 H1F0 H1 histone family member 0 2 2
MIRT530606 C7orf33 chromosome 7 open reading frame 33 2 4
MIRT530970 EXO5 exonuclease 5 2 4
MIRT532108 RRP8 ribosomal RNA processing 8 2 2
MIRT533006 ZFHX3 zinc finger homeobox 3 2 4
MIRT533103 YOD1 YOD1 deubiquitinase 2 2
MIRT533231 VLDLR very low density lipoprotein receptor 2 2
MIRT534073 SRPK1 SRSF protein kinase 1 2 2
MIRT534457 SCML2 Scm polycomb group protein like 2 2 4
MIRT536678 IKZF5 IKAROS family zinc finger 5 2 2
MIRT538224 CYR61 cysteine rich angiogenic inducer 61 2 2
MIRT539218 ANP32E acidic nuclear phosphoprotein 32 family member E 2 4
MIRT541157 PABPC1 poly(A) binding protein cytoplasmic 1 2 4
MIRT552682 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta 2 2
MIRT554457 SAMD8 sterile alpha motif domain containing 8 2 2
MIRT556688 KLHL28 kelch like family member 28 2 2
MIRT558162 ELAVL2 ELAV like RNA binding protein 2 2 2
MIRT558195 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha 2 4
MIRT558752 CHERP calcium homeostasis endoplasmic reticulum protein 2 2
MIRT561871 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils 2 2
MIRT567443 GNG12 G protein subunit gamma 12 2 2
MIRT568399 ATF7IP activating transcription factor 7 interacting protein 2 2
MIRT569178 DMD dystrophin 2 2
MIRT571465 CCDC80 coiled-coil domain containing 80 2 2
MIRT575987 Fem1a feminization 1 homolog a (C. elegans) 2 5
MIRT606844 FEM1A fem-1 homolog A 2 7
MIRT615813 COQ7 coenzyme Q7, hydroxylase 2 2
MIRT619491 QSOX2 quiescin sulfhydryl oxidase 2 2 2
MIRT624354 CHRM3 cholinergic receptor muscarinic 3 2 2
MIRT625979 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta 2 2
MIRT628564 MELK maternal embryonic leucine zipper kinase 2 2
MIRT631329 CARHSP1 calcium regulated heat stable protein 1 2 2
MIRT639435 PKP1 plakophilin 1 2 2
MIRT640366 C1orf210 chromosome 1 open reading frame 210 2 2
MIRT640701 SKI SKI proto-oncogene 2 2
MIRT640718 CEP68 centrosomal protein 68 2 2
MIRT641217 TRIB1 tribbles pseudokinase 1 2 4
MIRT642271 SMIM17 small integral membrane protein 17 2 2
MIRT644011 PPP1R3G protein phosphatase 1 regulatory subunit 3G 2 2
MIRT645146 CUBN cubilin 2 2
MIRT653158 SPTY2D1 SPT2 chromatin protein domain containing 1 2 2
MIRT654475 RANBP2 RAN binding protein 2 2 2
MIRT656177 MRPL44 mitochondrial ribosomal protein L44 2 2
MIRT658719 ELMOD2 ELMO domain containing 2 2 2
MIRT658857 DTX3L deltex E3 ubiquitin ligase 3L 2 2
MIRT663935 ZNF554 zinc finger protein 554 2 2
MIRT664901 EMC7 ER membrane protein complex subunit 7 2 2
MIRT668801 CYP20A1 cytochrome P450 family 20 subfamily A member 1 2 2
MIRT673514 TNFAIP8L1 TNF alpha induced protein 8 like 1 2 4
MIRT683192 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D 2 2
MIRT684049 FOLR1 folate receptor 1 2 2
MIRT685543 PI4K2B phosphatidylinositol 4-kinase type 2 beta 2 2
MIRT690365 RPL37A ribosomal protein L37a 2 2
MIRT691612 IPP intracisternal A particle-promoted polypeptide 2 2
MIRT691651 SLC43A3 solute carrier family 43 member 3 2 2
MIRT694108 ZNF446 zinc finger protein 446 2 2
MIRT695618 VBP1 VHL binding protein 1 2 2
MIRT695925 ZNF174 zinc finger protein 174 2 2
MIRT696445 SUGP1 SURP and G-patch domain containing 1 2 2
MIRT697983 TSPAN6 tetraspanin 6 2 2
MIRT699769 SEMA4D semaphorin 4D 2 2
MIRT702946 HIPK3 homeodomain interacting protein kinase 3 2 2
MIRT703385 GABPB1 GA binding protein transcription factor beta subunit 1 2 2
MIRT704011 EFCAB14 EF-hand calcium binding domain 14 2 2
MIRT704182 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 2 2
MIRT704446 CTNNB1 catenin beta 1 2 2
MIRT708514 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 2 2
MIRT713068 ENTHD1 ENTH domain containing 1 2 2
MIRT715799 TBL3 transducin beta like 3 2 2
MIRT716441 RPS24 ribosomal protein S24 2 2
MIRT719421 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 2 2
miRNA-Drug Resistance Associations
miRNA Drug Name CID NSC FDA Effect/Pattern Detection Method Level Phenotype Condition
hsa-mir-3973 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-3973 Paclitaxel 36314 NSC125973 approved sensitive cell line (A2780)
hsa-miR-3973 Cisplatin 5460033 NSC119875 approved sensitive cell line (A2780)

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